Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain KIAA1751 85452 genome.wustl.edu 37 1 1888083 1888083 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001080484.1 -1 predicted p.D664 0.000 98 0% 101 28.7% 0 - - - - NULL LZIC 84328 genome.wustl.edu 37 1 9992023 9992023 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032368.3 -1 provisional p.A147V 0.986 148 0% 178 25.8% 11 36.3% benign(0) tolerated(0.24) neutral(0.037) HMMPfam_ICAT,superfamily_beta-catenin-interacting protein ICAT EXOSC10 5394 genome.wustl.edu 37 1 11134035 11134035 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001001998.1 -1 validated p.V705I 0.778 212 0% 247 15.8% 42 21.4% benign(0.005) tolerated(0.65) neutral(0.003) NULL VPS13D 55187 genome.wustl.edu 37 1 12428630 12428630 + Missense_Mutation SNP T T A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015378.2 +1 reviewed p.I3519N 1.000 231 0% 253 26.1% 3 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF1162 UBR4 23352 genome.wustl.edu 37 1 19441313 19441313 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020765.2 -1 validated p.R3732W 1.000 149 0% 169 19.5% 9 55.5% probably_damaging(1) tolerated(0.1) deleterious(0.786) superfamily_ARM repeat AIM1L 55057 genome.wustl.edu 37 1 26658032 26658032 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001039775.2 -1 validated p.A376V 1.000 85 0% 102 10.8% 4 0% probably_damaging(0.981) deleterious(0.01) deleterious(0.831) HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF PHACTR4 65979 genome.wustl.edu 37 1 28818222 28818222 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_023923.3 +1 reviewed p.Y657H 1.000 108 0% 127 21.3% 18 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZMYM6 9204 genome.wustl.edu 37 1 35480309 35480309 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_007167.3 -1 validated p.A262T 0.070 225 0% 273 18.3% 0 - probably_damaging(0.959) tolerated(0.65) neutral(0.406) HMMPfam_zf-FCS ZMYM4 9202 genome.wustl.edu 37 1 35790987 35790987 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005095.2 +1 validated p.F22 1.000 552 0% 672 17.6% 2 0% - - - NULL MPL 4352 genome.wustl.edu 37 1 43818392 43818392 + Silent SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005373.2 +1 reviewed p.T619 0.435 98 1% 143 16.8% 0 - - - - NULL PARS2 25973 genome.wustl.edu 37 1 55224666 55224666 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152268.3 -1 validated p.L57F 0.252 42 0% 78 11.5% 2 0% benign(0.005) tolerated(0.26) neutral(0.034) superfamily_Class II aaRS and biotin synthetases C1orf168 199920 genome.wustl.edu 37 1 57221596 57221596 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001004303.4 -1 validated p.G368E 0.978 360 0% 379 16.4% 1 100% benign(0.003) tolerated(0.32) neutral(0.024) NULL DOCK7 85440 genome.wustl.edu 37 1 62961354 62961354 + Splice_Site SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_033407.2 -1 validated e38-2 1.000 199 0% 300 20% 0 - - - - - C1orf141 400757 genome.wustl.edu 37 1 67558921 67558921 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001013674.1 -1 predicted p.L324I 0.002 231 0% 347 22.8% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL NEGR1 257194 genome.wustl.edu 37 1 72748071 72748072 + Frame_Shift_Del DEL TG TG - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 TG TG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_173808.2 -1 validated p.Q36fs 1.000:1.000 - - - - - - - - - NULL USP33 23032 genome.wustl.edu 37 1 78194166 78194166 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015017.3 -1 validated p.M348V 1.000 292 0% 400 43.8% 3 66.6% benign(0.104) tolerated(0.21) neutral(0.052) HMMPfam_UCH,superfamily_Cysteine proteinases LOC128322 128322 genome.wustl.edu 37 1 113290796 113290796 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 XM_060943.1 +1 model p.T27M 0.998 65 0% 30 33.3% 0 - - - - HMMPfam_NTF2,superfamily_NTF2-like TRIM33 51592 genome.wustl.edu 37 1 114942183 114942183 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015906.3 -1 reviewed p.V1006M 1.000 334 0% 376 15.4% 3 0% probably_damaging(0.991) tolerated(0.17) deleterious(0.503) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain SELENBP1 8991 genome.wustl.edu 37 1 151341982 151341982 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003944.2 -1 reviewed p.G37D 0.919 65 0% 104 10.6% 220 16.3% benign(0.001) tolerated(0.7) neutral(0.002) HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C POGZ 23126 genome.wustl.edu 37 1 151381210 151381210 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015100.2 -1 reviewed p.R674H 1.000 724 0.1% 1301 17% 15 6.6% probably_damaging(1) tolerated(0.18) deleterious(0.556) NULL TDRKH 11022 genome.wustl.edu 37 1 151747185 151747185 + Splice_Site SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001083963.1 -1 validated e11+1 1.000 478 0% 844 26.7% 0 - - - - - IVL 3713 genome.wustl.edu 37 1 152883704 152883704 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005547.2 +1 reviewed p.E477D 0.000 236 0% 287 10.5% 8 12.5% possibly_damaging(0.94) tolerated(0.18) neutral(0.441) HMMPfam_Involucrin UBAP2L 9898 genome.wustl.edu 37 1 154224128 154224128 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014847.3 +1 validated p.S555G 1.000 94 0% 173 19.1% 70 11.4% possibly_damaging(0.88) tolerated(0.29) neutral(0.372) NULL PYGO2 90780 genome.wustl.edu 37 1 154931375 154931375 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138300.3 -1 validated p.G367 1.000 51 0% 95 15.8% 42 4.7% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD ASH1L 55870 genome.wustl.edu 37 1 155448184 155448184 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018489.2 -1 reviewed p.R1493C 0.999 369 0% 676 20.3% 7 14.2% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL YY1AP1 55249 genome.wustl.edu 37 1 155631126 155631127 + Frame_Shift_Del DEL TC TC - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_139118.1 -1 reviewed p.E369fs 1.000:1.000 - - - - - - - - - NULL KIAA0907 22889 genome.wustl.edu 37 1 155896909 155896909 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014949.2 -1 predicted p.R168L 1.000 299 0% 544 15.8% 8 25% benign(0.312) deleterious(0.01) deleterious(0.503) superfamily_Eukaryotic type KH-domain (KH-domain type I) ETV3 2117 genome.wustl.edu 37 1 157105447 157105447 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001145312.1 -1 validated p.Q34* 1.000 285 0.4% 428 15% 8 12.5% - - - "HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain" IGSF9 57549 genome.wustl.edu 37 1 159900173 159900173 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001135050.1 -1 validated p.L624 0.869 73 0% 104 34.6% 13 61.5% - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like SLAMF7 57823 genome.wustl.edu 37 1 160722917 160722917 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_021181.3 +1 provisional p.L320F 0.000 353 0% 648 11.7% 2 0% possibly_damaging(0.92) tolerated(0.16) neutral(0.430) NULL C1orf226 400793 genome.wustl.edu 37 1 162353173 162353173 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001085375.1 +1 validated p.D173 0.000 71 0% 100 17% 12 0% - - - NULL FAM5C 339479 genome.wustl.edu 37 1 190423928 190423928 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_199051.1 -1 provisional p.A31 0.880 142 0% 346 16.8% 0 - - - - NULL ATP6V1G3 127124 genome.wustl.edu 37 1 198492614 198492614 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_133262.2 -1 reviewed p.Y88 0.953 606 0% 928 25.9% 0 - - - - HMMPfam_V-ATPase_G NUAK2 81788 genome.wustl.edu 37 1 205277761 205277779 + Frame_Shift_Del DEL TCGCGCTCACTGAGCTGCT TCGCGCTCACTGAGCTGCT - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 TCGCGCTCACTGAGCTGCT TCGCGCTCACTGAGCTGCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_030952.1 -1 provisional p.Q146fs 0.988:0.988:0.001:0.055:0.932:0.957:1.000:1.000:0.890:0.978:0.983:0.990:1.000:0.994:0.792:0.808:0.993:1.000:1.000 - - - - - - - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PTPN14 5784 genome.wustl.edu 37 1 214537992 214537992 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005401.4 -1 reviewed p.R1100C 1.000 145 0% 178 14.6% 4 0% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 DISP1 84976 genome.wustl.edu 37 1 223177026 223177026 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032890.2 +1 reviewed p.R763C 1.000 117 0% 212 12.3% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Patched PARP1 142 genome.wustl.edu 37 1 226564877 226564877 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001618.3 -1 reviewed p.A625T 0.989 249 0% 455 15.6% 61 13.1% benign(0) tolerated(0.56) neutral(0.006) HMMPfam_WGR,HMMSmart_SM00773 OBSCN 84033 genome.wustl.edu 37 1 228503673 228503673 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001098623.1 +1 reviewed p.V4380M 0.879 33 0% 33 33.3% 3 33.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin PGBD5 79605 genome.wustl.edu 37 1 230461114 230461114 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024554.3 -1 reviewed p.V471M 1.000 134 0% 280 29.6% 0 - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL C1orf124 83932 genome.wustl.edu 37 1 231483639 231483639 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032018.4 +1 validated p.R140C 1.000 222 0% 509 18.1% 10 10% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMSmart_SM00731,HMMPfam_SprT-like SIPA1L2 57568 genome.wustl.edu 37 1 232551324 232551324 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020808.3 -1 validated p.A1560T 0.941 134 0% 239 11.3% 52 23% benign(0) tolerated(0.21) neutral(0.044) NULL MBOAT2 129642 genome.wustl.edu 37 2 9008641 9008641 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138799.2 -1 validated p.G308W 1.000 316 0% 365 26.6% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MBOAT ATP6V1C2 245973 genome.wustl.edu 37 2 10915114 10915114 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001039362.1 +1 reviewed p.R248C 0.992 468 0% 532 17.9% 24 8.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_V-ATPase_C APOB 338 genome.wustl.edu 37 2 21231917 21231917 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000384.2 -1 reviewed p.Q2608R 0.299 113 0% 130 20% 0 - benign(0.001) - - NULL SLC5A6 8884 genome.wustl.edu 37 2 27430465 27430465 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_021095.2 -1 validated p.S18 0.006 178 0% 168 21.4% 31 35.4% - - - NULL SLC30A3 7781 genome.wustl.edu 37 2 27481121 27481121 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003459.4 -1 validated p.A111V 1.000 37 0% 49 51% 1 100% benign(0.001) tolerated(0.12) neutral(0.261) HMMPfam_Cation_efflux ZNF512 84450 genome.wustl.edu 37 2 27824260 27824260 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032434.2 +1 validated p.R207H 1.000 681 0% 773 42.8% 3 66.6% benign(0.009) tolerated(0.18) neutral(0.057) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 CCDC121 79635 genome.wustl.edu 37 2 27850576 27850576 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001142683.2 -1 validated p.L193I 0.000 352 0.3% 452 15.3% 2 0% possibly_damaging(0.707) tolerated(0.4) neutral(0.271) NULL LTBP1 4052 genome.wustl.edu 37 2 33526605 33526605 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000415140 +1 known p.S87N 0.998 276 0% 363 22.9% 22 9% - - - HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin THADA 63892 genome.wustl.edu 37 2 43625142 43625142 + Missense_Mutation SNP G G A rs182266798 by1000genomes TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001083953.1 -1 validated p.R1399W 1.000 324 0% 472 18.9% 24 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL REL 5966 genome.wustl.edu 37 2 61118871 61118871 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002908.2 +1 validated p.R22C 1.000 361 0.3% 423 18.4% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P53_like_DNA_bnd,HMMPfam_RHD ATP6V1B1 525 genome.wustl.edu 37 2 71189967 71189967 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001692.3 +1 reviewed p.Q282 1.000 132 0% 126 23.8% 5 20% - - - HMMPfam_ATP-synt_ab,superfamily_SSF52540 RAB11FIP5 26056 genome.wustl.edu 37 2 73302805 73302805 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015470.2 -1 validated p.H602 0.998 38 0% 47 19.1% 10 30% - - - HMMPfam_RBD-FIP NOTO 344022 genome.wustl.edu 37 2 73435675 73435675 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001134462.1 +1 provisional p.K177I 0.946 233 0% 292 14.4% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like REG3G 130120 genome.wustl.edu 37 2 79253245 79253245 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001008387.1 +1 validated p.S9N 0.006 293 0% 385 20.3% 0 - benign(0.013) tolerated(0.34) neutral(0.024) NULL ATOH8 84913 genome.wustl.edu 37 2 85991300 85991300 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032827.6 +1 validated p.R319C 1.000 30 0% 29 20.7% 4 75% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LOC730268 730268 genome.wustl.edu 37 2 88037366 88037366 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 XM_002342213.1 +1 model p.I648F 1.000 796 0% 983 8.7% 2 0% - - - NULL CIAO1 9391 genome.wustl.edu 37 2 96935008 96935008 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004804.2 +1 validated p.V232M 1.000 259 0% 280 18.9% 39 12.8% possibly_damaging(0.907) tolerated(0.11) deleterious(0.632) superfamily_WD40_like SCTR 6344 genome.wustl.edu 37 2 120204406 120204406 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002980.2 -1 reviewed p.V357I 0.415 180 0% 163 18.4% 1 100% benign(0.006) tolerated(0.31) neutral(0.027) HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like GLI2 2736 genome.wustl.edu 37 2 121747795 121747795 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005270.4 +1 reviewed p.D1435 0.012 14 0% 31 22.6% 0 - - - - NULL UGGT1 56886 genome.wustl.edu 37 2 128877942 128877942 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020120.3 +1 validated p.P295 0.994 194 0% 253 21.7% 2 0% - - - NULL FAM123C 205147 genome.wustl.edu 37 2 131520783 131520783 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001105193.1 +1 validated p.V380M 0.000 42 0% 67 46.3% 0 - benign(0.073) deleterious(0.01) neutral(0.411) HMMPfam_WTX NEB 4703 genome.wustl.edu 37 2 152466600 152466600 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004543.4 -1 reviewed p.G3775D 1.000 439 0.2% 539 41.4% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Nebulin GALNT5 11227 genome.wustl.edu 37 2 158115162 158115162 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014568.1 +1 provisional p.R190C 0.000 54 0% 82 24.4% 0 - benign(0.003) tolerated(0.06) neutral(0.323) NULL LRP2 4036 genome.wustl.edu 37 2 170113733 170113733 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004525.2 -1 reviewed p.R847H 1.000 227 0% 263 34.6% 0 - possibly_damaging(0.444) deleterious(0.04) deleterious(0.494) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 PPIG 9360 genome.wustl.edu 37 2 170463635 170463635 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004792.2 +1 validated p.S89F 1.000 470 0% 513 31.6% 10 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like GORASP2 26003 genome.wustl.edu 37 2 171819366 171819366 + Missense_Mutation SNP G G C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015530.3 +1 reviewed p.A310P 0.973 293 0.3% 315 34.9% 128 46.8% possibly_damaging(0.674) tolerated(0.24) neutral(0.277) HMMPfam_GRASP55_65 TTN 7273 genome.wustl.edu 37 2 179571211 179571211 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000356127 -1 known p.I8553N 1.000 542 0% 614 21.5% 0 - unknown(0) - - NULL GTF3C3 9330 genome.wustl.edu 37 2 197654703 197654703 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012086.2 -1 provisional p.A209 1.000 338 0% 487 24% 6 33.3% - - - HMMSmart_SM00028,superfamily_Protein prenylyltransferase SF3B1 23451 genome.wustl.edu 37 2 198265158 198265158 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012433.2 -1 reviewed p.D907Y 1.000 48 0% 92 44.6% 71 40.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat TUBA4A 7277 genome.wustl.edu 37 2 220115131 220115133 + In_Frame_Del DEL CTT CTT - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006000.1 -1 reviewed p.K430in_frame_del 1.000:1.000:1.000 - - - - - - - - - superfamily_Tubulin C-terminal domain-like CUL3 8452 genome.wustl.edu 37 2 225376111 225376111 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003590.3 -1 validated p.N281 1.000 598 0% 664 17.2% 18 38.8% - - - HMMPfam_Cullin,superfamily_Cullin repeat COL4A4 1286 genome.wustl.edu 37 2 227872777 227872777 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000092.4 -1 reviewed p.P1589L 1.000 40 0% 43 32.6% 0 - unknown(0) deleterious(0) - HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like C2orf83 56918 genome.wustl.edu 37 2 228476206 228476206 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020161.3 -1 validated p.S119 0.000 164 0% 194 23.2% 0 - - - - NULL MLPH 79083 genome.wustl.edu 37 2 238451249 238451249 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024101.5 +1 reviewed p.A496T 0.682 62 0% 52 25% 62 25.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CAPN10 11132 genome.wustl.edu 37 2 241528770 241528770 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_023083.2 +1 reviewed p.A51V 0.790 71 0% 74 12.2% 3 33.3% possibly_damaging(0.736) tolerated(0.06) deleterious(0.592) HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases ITPR1 3708 genome.wustl.edu 37 3 4735413 4735413 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001099952.2 +1 reviewed p.D1414 1.000 43 0% 61 14.8% 1 0% - - - NULL SCN10A 6336 genome.wustl.edu 37 3 38739285 38739285 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006514.2 -1 validated p.K1809R 0.998 120 0% 167 15.6% 0 - possibly_damaging(0.947) tolerated(0.06) deleterious(0.713) NULL CTNNB1 1499 genome.wustl.edu 37 3 41266097 41266097 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001098209.1 +1 reviewed p.D32N 1.000 146 0% 141 14.9% 73 32.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CTNNB1 1499 genome.wustl.edu 37 3 41266104 41266104 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001098209.1 +1 reviewed p.G34V 1.000 139 0% 149 18.8% 82 21.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DHX30 22907 genome.wustl.edu 37 3 47891405 47891405 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138615.2 +1 reviewed p.R1127Q 0.999 35 0% 33 21.2% 76 36.8% benign(0.051) tolerated(0.09) neutral(0.299) NULL RAD54L2 23132 genome.wustl.edu 37 3 51624506 51624508 + In_Frame_Del DEL GAG GAG - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 GAG GAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015106.2 +1 validated p.E27in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL DNAH1 25981 genome.wustl.edu 37 3 52409266 52409266 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015512.4 +1 validated p.K2332N 0.998 55 0% 63 25.4% 0 - benign(0.406) tolerated(0.13) neutral(0.383) HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases CACNA1D 776 genome.wustl.edu 37 3 53757969 53757969 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000720.2 +1 validated p.T701 0.118 325 0% 393 20.6% 0 - - - - HMMPfam_Ion_trans,superfamily_SSF81324 CACNA1D 776 genome.wustl.edu 37 3 53844073 53844073 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000720.2 +1 validated p.S2000 0.228 42 0% 39 20.5% 2 0% - - - NULL ATP6V1A 523 genome.wustl.edu 37 3 113499957 113499957 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001690.2 +1 reviewed p.S48I 0.998 338 0.3% 436 17% 8 25% benign(0.011) tolerated(0.22) neutral(0.043) HMMPfam_ATP-synt_ab_N,superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase POLQ 10721 genome.wustl.edu 37 3 121256010 121256010 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_199420.3 -1 validated p.R226Q 1.000 289 0.3% 395 26.6% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases GOLGB1 2804 genome.wustl.edu 37 3 121388114 121388114 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004487.3 -1 validated p.G3084D 0.055 264 0% 292 15.4% 32 28.1% benign(0.002) deleterious(0.04) neutral(0.349) NULL MYLK 4638 genome.wustl.edu 37 3 123401086 123401086 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_053025.3 -1 reviewed p.V1213M 0.692 220 0% 223 25.6% 6 0% benign(0.051) tolerated(0.09) neutral(0.299) NULL KALRN 8997 genome.wustl.edu 37 3 124397111 124397111 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000354186 +1 known p.Q2392* 1.000 234 0% 271 26.2% 0 - benign(0.314) deleterious(0.05) neutral(0.444) NULL PLXNA1 5361 genome.wustl.edu 37 3 126722311 126722311 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032242.3 +1 validated p.Q483* 1.000 53 0% 55 12.7% 9 0% - - - superfamily_Sema domain C3orf25 90288 genome.wustl.edu 37 3 129127656 129127656 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000326085 -1 known p.R361C 0.241 136 0% 138 10.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ACAD11 84129 genome.wustl.edu 37 3 132345594 132345594 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032169.4 -1 validated p.Q380* 1.000 487 0.2% 547 37.8% 3 33.3% - - - superfamily_Acyl-CoA dehydrogenase NM domain-like HLTF 6596 genome.wustl.edu 37 3 148781310 148781310 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003071.3 -1 reviewed p.D356 0.910 274 0% 357 15.4% 7 14.2% - - - HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases GPR149 344758 genome.wustl.edu 37 3 154146619 154146619 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001038705.1 -1 provisional p.R262 0.000 19 0% 20 35% 0 - - - - NULL PIK3CA 5290 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G rs121913279 byCluster TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006218.2 +1 reviewed p.H1047R 1.000 209 0% 311 38.6% 5 60% possibly_damaging(0.926) deleterious(0.03) deleterious(0.739) HMMSmart_PI3Kc,superfamily_Kinase_like ECE2 9718 genome.wustl.edu 37 3 184005670 184005670 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014693.3 +1 validated p.A555T 0.997 150 0% 170 15.9% 0 - benign(0.003) tolerated(1) - "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" DGKG 1608 genome.wustl.edu 37 3 186038214 186038214 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001346.2 -1 reviewed p.E12G 0.995 409 0% 454 14.3% 0 - possibly_damaging(0.811) tolerated(0.51) neutral(0.315) superfamily_EF-hand MFI2 4241 genome.wustl.edu 37 3 196735691 196735691 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005929.4 -1 reviewed p.R557 0.049 58 0% 70 42.9% 3 33.3% - - - HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_2,superfamily_Periplasmic binding protein-like II HGFAC 3083 genome.wustl.edu 37 4 3444804 3444804 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001528.2 +1 reviewed p.R109K 0.852 13 0% 14 28.6% 0 - benign(0) tolerated(0.69) neutral(0.002) HMMPfam_fn2,HMMSmart_FN2,PatternScan_FN2_1,superfamily_Kringle-like STK32B 55351 genome.wustl.edu 37 4 5448438 5448438 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018401.1 +1 provisional p.G201R 0.986 74 0% 88 15.9% 9 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MAN2B2 23324 genome.wustl.edu 37 4 6594921 6594921 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000505907 +1 known p.A233V 0.004 109 0% 138 19.6% 25 16% - - - HMMPfam_Glyco_hydro_38,superfamily_Glycoside hydrolase/deacetylase ACOX3 8310 genome.wustl.edu 37 4 8398737 8398737 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003501.2 -1 validated p.R328H 0.997 88 0% 103 24.3% 9 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like LGI2 55203 genome.wustl.edu 37 4 25005432 25005432 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018176.3 -1 validated p.R427* 0.163 78 0% 106 26.4% 1 100% - - - HMMPfam_EPTP TECRL 253017 genome.wustl.edu 37 4 65165701 65165701 + Missense_Mutation SNP G G C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001010874.4 -1 validated p.I255M 0.991 413 0% 379 47.8% 0 - possibly_damaging(0.46) tolerated(0.16) neutral(0.210) NULL AMBN 258 genome.wustl.edu 37 4 71471925 71471925 + Silent SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_016519.4 +1 reviewed p.A274 0.997 108 0% 118 12.7% 0 - - - - HMMPfam_Amelin,HMMSmart_SM00817 HSD17B11 51170 genome.wustl.edu 37 4 88258504 88258504 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_016245.3 -1 validated p.R276H 1.000 325 0% 389 22.1% 13 46.1% possibly_damaging(0.722) deleterious(0.01) deleterious(0.667) NULL DSPP 1834 genome.wustl.edu 37 4 88535707 88535707 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014208.3 +1 reviewed p.S631 0.982 551 0.2% 542 16.8% 0 - - - - NULL MTTP 4547 genome.wustl.edu 37 4 100534204 100534204 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000253.2 +1 reviewed p.N708 0.039 380 0% 490 25.1% 0 - - - - NULL TACR3 6870 genome.wustl.edu 37 4 104640369 104640369 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001059.1 -1 reviewed p.A155V 1.000 102 0% 88 18.2% 0 - benign(0.046) tolerated(0.29) neutral(0.032) HMMPfam_7tm_1,superfamily_SSF81321 FAT4 79633 genome.wustl.edu 37 4 126238739 126238739 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024582.4 +1 validated p.N391 1.000 33 0% 24 20.8% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FREM3 166752 genome.wustl.edu 37 4 144619428 144619428 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000329798 -1 known p.Q801* 1.000 281 0% 342 19% 0 - - - - NULL WDR17 116966 genome.wustl.edu 37 4 177069470 177069470 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_170710.4 +1 reviewed p.H651 0.994 160 0% 246 23.6% 0 - - - - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 FAT1 2195 genome.wustl.edu 37 4 187539651 187539651 + Nonsense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005245.3 -1 reviewed p.E2697* 0.997 148 0% 182 47.3% 2 0% - - - HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases LOC100128063 100128063 genome.wustl.edu 37 5 1052736 1052740 + RNA DEL GAGCA GAGCA - rs68188619 byCluster;by1000genomes TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 GAGCA GAGCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 XR_079180.1 +1 model NULL 0.000:0.000:0.000:0.001:0.000 - - - - - - - - - - SLC12A7 10723 genome.wustl.edu 37 5 1081739 1081739 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006598.2 -1 validated p.A417V 0.937 47 0% 66 15.2% 17 23.5% benign(0.003) tolerated(0.2) neutral(0.049) HMMPfam_AA_permease CDH10 1008 genome.wustl.edu 37 5 24535232 24535232 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006727.2 -1 reviewed p.R268L 0.988 321 0% 321 39.6% 0 - probably_damaging(0.985) deleterious(0.04) deleterious(0.781) superfamily_Cadherin C6 729 genome.wustl.edu 37 5 41176696 41176696 + Missense_Mutation SNP T T G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000065.2 -1 reviewed p.N350T 1.000 288 0.3% 384 44.8% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_MACPF,HMMSmart_MACPF ERCC8 1161 genome.wustl.edu 37 5 60240783 60240783 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000082.3 -1 reviewed p.L18P 0.764 142 0% 132 12.1% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40 repeat-like IPO11 51194 genome.wustl.edu 37 5 61923044 61923044 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001134779.1 +1 validated p.A983T 1.000 255 0% 280 22.1% 14 21.4% benign(0.015) tolerated(0.42) neutral(0.015) NULL CWC27 10283 genome.wustl.edu 37 5 64081367 64081367 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005869.2 +1 validated p.D152 0.588 339 0% 385 11.4% 7 28.5% - - - HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like PIK3R1 5295 genome.wustl.edu 37 5 67569842 67569845 + Splice_Site DEL GTGA GTGA - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 GTGA GTGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_181523.1 +1 reviewed e3+1 1.000:1.000:1.000:1.000 - - - - - - - - - - CMYA5 202333 genome.wustl.edu 37 5 79031308 79031308 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_153610.3 +1 validated p.E2240D 0.033 76 0% 112 17% 0 - possibly_damaging(0.945) deleterious(0) deleterious(0.834) NULL GPR98 84059 genome.wustl.edu 37 5 89923207 89923207 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032119.3 +1 reviewed p.V284 1.000 170 0% 248 15.7% 0 - - - - NULL NR2F1 7025 genome.wustl.edu 37 5 92923673 92923673 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005654.4 +1 provisional p.A172T 1.000 42 0% 40 22.5% 2 0% benign(0.001) tolerated(0.19) neutral(0.050) superfamily_Str_ncl_receptor,HMMPfam_zf-C4_C,superfamily_SSF57716 ERAP2 64167 genome.wustl.edu 37 5 96237332 96237332 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001130140.1 +1 validated p.R565 0.999 126 0% 147 27.9% 23 8.6% - - - NULL APC 324 genome.wustl.edu 37 5 112173857 112173857 + Missense_Mutation SNP C C G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000038.4 +1 reviewed p.R856G 0.919 137 0% 148 12.2% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL FBN2 2201 genome.wustl.edu 37 5 127670411 127670411 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001999.3 -1 reviewed p.D1367Y 1.000 212 0% 239 13.4% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin ADAMTS19 171019 genome.wustl.edu 37 5 128862117 128862117 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_133638.3 +1 reviewed p.A346T 1.000 220 0% 300 15% 0 - benign(0.022) tolerated(0.2) neutral(0.050) "superfamily_Metalloproteases (""zincins"") catalytic domain" PHF15 23338 genome.wustl.edu 37 5 133914805 133914805 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015288.4 +1 provisional p.R724M 0.380 60 0% 51 25.5% 6 0% possibly_damaging(0.923) tolerated(0.25) neutral(0.409) NULL KIF20A 10112 genome.wustl.edu 37 5 137521312 137521312 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005733.2 +1 validated p.L680 0.998 71 0% 112 20.5% 15 26.6% - - - NULL PCDHA8 56140 genome.wustl.edu 37 5 140222569 140222569 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018911.2 +1 reviewed p.V555M 0.977 31 0% 31 19.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDHGB4 8641 genome.wustl.edu 37 5 140767466 140767466 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003736.2 +1 reviewed p.A5 0.001 127 0% 125 20.8% 0 - - - - NULL ARAP3 64411 genome.wustl.edu 37 5 141039479 141039479 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022481.5 -1 reviewed p.A1045V 1.000 47 0% 44 13.6% 8 25% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP TCOF1 6949 genome.wustl.edu 37 5 149756155 149756155 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001135243.1 +1 reviewed p.S771N 0.054 122 0% 168 15.5% 11 18.1% possibly_damaging(0.873) tolerated(0.23) neutral(0.381) HMMPfam_Treacle NDST1 3340 genome.wustl.edu 37 5 149901260 149901260 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001543.4 +1 validated p.D148 0.879 60 0% 81 29.6% 6 0% - - - NULL C5orf4 10826 genome.wustl.edu 37 5 154200976 154200976 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032385.3 -1 validated p.M230T 1.000 341 0% 391 29.9% 6 33.3% benign(0) deleterious(0.04) neutral(0.349) HMMPfam_FA_hydroxylase C5orf52 100190949 genome.wustl.edu 37 5 157106887 157106887 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001145132.1 +1 validated p.H120 0.535 144 0% 148 15.5% 0 - - - - NULL FBXW11 23291 genome.wustl.edu 37 5 171337724 171337724 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012300.2 -1 reviewed p.L75 1.000 265 0% 268 22.4% 6 0% - - - NULL NSD1 64324 genome.wustl.edu 37 5 176700780 176700780 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022455.4 +1 reviewed p.I1873V 1.000 233 0% 273 45.4% 6 33.3% probably_damaging(0.961) deleterious(0.01) deleterious(0.810) superfamily_Tudor/PWWP/MBT,superfamily_SET domain N4BP3 23138 genome.wustl.edu 37 5 177546703 177546703 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015111.1 +1 validated p.R40H 1.000 27 0% 26 15.4% 3 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL GRM6 2916 genome.wustl.edu 37 5 178418473 178418473 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000843.3 -1 reviewed p.T270M 0.997 227 0% 180 30.6% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_ANF_receptor,superfamily_SSF53822 C5orf45 51149 genome.wustl.edu 37 5 179275033 179275033 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_016175.3 -1 validated p.R54C 0.999 238 0% 292 29.8% 7 0% possibly_damaging(0.479) tolerated(0.1) neutral(0.445) NULL FARS2 10667 genome.wustl.edu 37 6 5613464 5613464 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006567.3 +1 reviewed p.Y376 0.875 528 0% 567 22.6% 13 15.3% - - - HMMPfam_FDX-ACB,superfamily_Fdx_AntiC_bd KDM1B 221656 genome.wustl.edu 37 6 18197354 18197354 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_153042.3 +1 validated p.V214I 1.000 280 0% 334 18.3% 3 66.6% benign(0.065) tolerated(0.91) neutral(0.004) NULL PPP1R10 5514 genome.wustl.edu 37 6 30569384 30569384 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002714.2 -1 reviewed p.R922H 1.000 106 0% 110 20% 64 31.2% unknown(0) deleterious(0.01) - HMMPfam_zf-CCCH,HMMSmart_SM00356 TNXB 7148 genome.wustl.edu 37 6 32065664 32065664 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_019105.6 -1 reviewed p.R104 0.481 61 0% 71 32.4% 0 - - - - NULL CLPSL1 340204 genome.wustl.edu 37 6 35748915 35748915 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001010886.3 +1 predicted p.L10 0.080 336 0% 438 12.8% 2 0% - - - NULL BRPF3 27154 genome.wustl.edu 37 6 36168931 36168931 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015695.2 +1 validated p.A278T 1.000 31 0% 55 14.5% 4 25% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FGD2 221472 genome.wustl.edu 37 6 36989380 36989380 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_173558.3 +1 validated p.E442D 0.970 103 0% 83 12% 0 - benign(0) tolerated(0.47) neutral(0.011) superfamily_PH domain-like DNAH8 1769 genome.wustl.edu 37 6 38794124 38794124 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001371.2 +1 validated p.R1130H 1.000 171 0% 226 15.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TSPO2 222642 genome.wustl.edu 37 6 41011397 41011397 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001010873.2 +1 validated p.T92I 0.001 122 0% 180 30% 0 - benign(0.004) tolerated(0.08) neutral(0.300) HMMPfam_TspO_MBR FOXP4 116113 genome.wustl.edu 37 6 41553195 41553202 + Frame_Shift_Del DEL GGAGCAGC GGAGCAGC - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 GGAGCAGC GGAGCAGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001012426.1 +1 reviewed p.Q150fs 0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL PEX6 5190 genome.wustl.edu 37 6 42942666 42942666 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000287.3 -1 reviewed p.Y331 1.000 312 0% 336 16.1% 12 16.6% - - - NULL CUL9 23113 genome.wustl.edu 37 6 43153889 43153889 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015089.2 +1 validated p.S316N 1.000 150 0% 116 13.8% 4 50% unknown(0) deleterious(0.01) - NULL DOPEY1 23033 genome.wustl.edu 37 6 83848473 83848473 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015018.2 +1 validated p.E1571G 1.000 170 0% 230 17.4% 2 0% possibly_damaging(0.904) tolerated(0.13) deleterious(0.611) NULL FBXL4 26235 genome.wustl.edu 37 6 99374515 99374515 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012160.3 -1 reviewed p.T117M 1.000 138 0% 146 12.3% 6 50% probably_damaging(0.998) tolerated(0.08) deleterious(0.774) NULL ENPP3 5169 genome.wustl.edu 37 6 132007037 132007037 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005021.3 +1 reviewed p.R425K 0.457 210 0% 212 10.4% 2 50% benign(0.001) tolerated(1) - HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core UTRN 7402 genome.wustl.edu 37 6 145093073 145093073 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_007124.2 +1 reviewed p.H2842 1.000 178 0% 226 33.6% 10 40% - - - HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473 IGF2R 3482 genome.wustl.edu 37 6 160484659 160484659 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000876.2 +1 reviewed p.A1295T 1.000 152 0% 181 17.1% 4 25% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain BRAT1 221927 genome.wustl.edu 37 7 2581437 2581437 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152743.2 -1 provisional p.T350M 0.000 12 0% 20 35% 41 14.6% possibly_damaging(0.952) tolerated(0.21) neutral(0.440) superfamily_ARM repeat PHF14 9678 genome.wustl.edu 37 7 11022445 11022445 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000303905 +1 known p.R187* 0.994 312 0% 409 24.7% 5 0% - - - NULL CDCA7L 55536 genome.wustl.edu 37 7 21945239 21945239 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018719.4 -1 validated p.R311Q 0.975 150 0% 169 18.9% 6 0% benign(0.004) tolerated(0.73) neutral(0.002) NULL GCK 2645 genome.wustl.edu 37 7 44198690 44198690 + Silent SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_033507.1 -1 reviewed p.A10 0.006 140 0% 107 24.3% 0 - - - - NULL TNS3 64759 genome.wustl.edu 37 7 47343149 47343149 + Frame_Shift_Del DEL G G - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022748.10 -1 validated p.S952fs 0.999 - - - - - - - - - NULL ABCA13 154664 genome.wustl.edu 37 7 48318902 48318902 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152701.3 +1 reviewed p.G2704D 0.000 100 0% 132 21.2% 0 - benign(0) - - NULL GRB10 2887 genome.wustl.edu 37 7 50742350 50742350 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005311.4 -1 reviewed p.D49N 1.000 103 0% 119 33.6% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TYW1 55253 genome.wustl.edu 37 7 66582544 66582544 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018264.2 +1 validated p.R546H 1.000 332 0% 444 15.3% 6 33.3% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes NSUN5P2 260294 genome.wustl.edu 37 7 72419542 72419542 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000330999 -1 known p.A161V 0.990 79 0% 87 12.6% 9 0% - - - HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases NSUN5 55695 genome.wustl.edu 37 7 72718852 72718852 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_148956.2 -1 reviewed p.C216Y 1.000 90 0% 115 22.6% 20 30% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335 FZD9 8326 genome.wustl.edu 37 7 72849130 72849130 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003508.2 +1 reviewed p.R265C 1.000 104 0% 114 15.8% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Frizzled GTF2IRD2 84163 genome.wustl.edu 37 7 74211470 74211470 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_173537.2 -1 validated p.W794L 0.960 258 0% 338 17.2% 7 14.2% probably_damaging(0.999) tolerated(0.33) deleterious(0.514) NULL SEMA3D 223117 genome.wustl.edu 37 7 84727164 84727164 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152754.2 -1 validated p.I90N 1.000 122 0% 194 17.5% 0 - probably_damaging(0.965) deleterious(0) deleterious(0.851) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema MBLAC1 255374 genome.wustl.edu 37 7 99725808 99725808 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_203397.1 +1 validated p.A264T 0.000 28 0% 39 30.8% 4 50% benign(0) - - NULL MUC17 140453 genome.wustl.edu 37 7 100677857 100677857 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001040105.1 +1 provisional p.V1054M 0.000 378 0% 229 13.1% 0 - unknown(0) - - NULL COG5 10466 genome.wustl.edu 37 7 106924134 106924134 + Missense_Mutation SNP C C G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006348.3 -1 validated p.A484P 1.000 429 0% 538 11.5% 6 33.3% probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL LAMB1 3912 genome.wustl.edu 37 7 107642064 107642064 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002291.2 -1 reviewed p.S51L 0.255 16 0% 17 35.3% 6 16.6% benign(0.02) tolerated(0.3) neutral(0.030) HMMPfam_Laminin_N,HMMSmart_SM00136 AASS 10157 genome.wustl.edu 37 7 121773617 121773617 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005763.3 -1 reviewed p.Y55C 1.000 269 0% 275 24.7% 0 - benign(0.422) tolerated(0.13) neutral(0.390) HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like GRM8 2918 genome.wustl.edu 37 7 126883175 126883175 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000845.2 -1 reviewed p.M28I 1.000 93 0% 104 18.3% 0 - benign(0.003) tolerated(0.46) neutral(0.012) NULL JHDM1D 80853 genome.wustl.edu 37 7 139833439 139833439 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_030647.1 -1 validated p.W100R 1.000 420 0% 566 15.9% 3 0% probably_damaging(0.996) deleterious(0.05) deleterious(0.807) superfamily_FYVE/PHD zinc finger DENND2A 27147 genome.wustl.edu 37 7 140285482 140285482 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015689.3 -1 validated p.E384D 1.000 231 0% 358 23.2% 7 0% probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL OR6B1 135946 genome.wustl.edu 37 7 143701744 143701744 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001005281.1 +1 provisional p.G219R 0.021 236 0% 329 27.1% 0 - benign(0.053) tolerated(0.07) neutral(0.323) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like GIMAP8 155038 genome.wustl.edu 37 7 150164090 150164090 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_175571.2 +1 reviewed p.A102T 0.000 139 0% 197 30.5% 1 0% benign(0.291) tolerated(0.22) neutral(0.132) HMMPfam_AIG1,superfamily_SSF52540 ASB10 136371 genome.wustl.edu 37 7 150883923 150883923 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001142459.1 -1 reviewed p.R144C 0.999 31 0% 43 18.6% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) superfamily_Ankyrin repeat HTR5A 3361 genome.wustl.edu 37 7 154862970 154862970 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024012.2 +1 reviewed p.D121N 1.000 25 0% 32 21.9% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like C8orf74 203076 genome.wustl.edu 37 8 10557947 10557947 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001040032.1 +1 validated p.A284V 0.000 161 0% 156 31.4% 0 - unknown(0) tolerated(0.11) - NULL RHOBTB2 23221 genome.wustl.edu 37 8 22863610 22863610 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015178.2 +1 validated p.R145H 1.000 193 0% 215 23.7% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540 ADRA1A 148 genome.wustl.edu 37 8 26722219 26722219 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_033303.3 -1 reviewed p.G90C 1.000 89 0% 90 15.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_SSF81321 ADAM9 8754 genome.wustl.edu 37 8 38948816 38948816 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003816.2 +1 reviewed p.P750L 0.266 243 0% 352 10.5% 70 2.8% benign(0.03) deleterious(0) neutral(0.446) NULL CHD7 55636 genome.wustl.edu 37 8 61729019 61729019 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_017780.2 +1 reviewed p.R858* 1.000 343 0% 421 22.6% 1 0% - - - HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like PRDM14 63978 genome.wustl.edu 37 8 70964324 70964324 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024504.2 -1 validated p.H568 0.236 111 0% 174 22.4% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PRDM14 63978 genome.wustl.edu 37 8 70981474 70981474 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024504.2 -1 validated p.G208R 0.997 59 0% 92 23.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL C8orf84 157869 genome.wustl.edu 37 8 73993380 73993380 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_153225.3 -1 validated p.R95C 0.981 25 0% 28 32.1% 153 20.9% probably_damaging(0.992) tolerated(0.07) deleterious(0.766) HMMSmart_TSP1,superfamily_TSP1 GEM 2669 genome.wustl.edu 37 8 95272707 95272707 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005261.3 -1 reviewed p.R9C 1.000 95 0% 136 16.9% 8 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FBXO43 286151 genome.wustl.edu 37 8 101153861 101153861 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001029860.2 -1 validated p.V207 0.046 39 0% 56 17.9% 0 - - - - NULL CSMD3 114788 genome.wustl.edu 37 8 113241081 113241081 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_198123.1 -1 validated p.P3623L 1.000 216 0% 290 11.7% 0 - possibly_damaging(0.907) tolerated(0.39) neutral(0.377) NULL CSMD3 114788 genome.wustl.edu 37 8 113353748 113353748 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_198123.1 -1 validated p.D2204Y 1.000 426 0% 546 13.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD3 114788 genome.wustl.edu 37 8 113841955 113841955 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_198123.1 -1 validated p.D607N 1.000 297 0% 342 12% 0 - unknown(0) deleterious(0.01) - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain COL14A1 7373 genome.wustl.edu 37 8 121256207 121256207 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_021110.1 +1 validated p.T813 0.059 156 0% 201 23.4% 3 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MTSS1 9788 genome.wustl.edu 37 8 125565703 125565703 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014751.4 -1 validated p.R600C 1.000 129 0% 146 24.7% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL HHLA1 10086 genome.wustl.edu 37 8 133078137 133078137 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001145095.1 -1 provisional p.S516 0.074 407 0.2% 517 41.6% 0 - - - - NULL PLEC 5339 genome.wustl.edu 37 8 144991559 144991559 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_201380.2 -1 reviewed p.V4281M 1.000 38 0% 38 18.4% 85 25.8% probably_damaging(0.999) - - HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat HSF1 3297 genome.wustl.edu 37 8 145535491 145535491 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005526.2 +1 reviewed p.M277V 0.064 20 0% 20 30% 50 14% benign(0) tolerated(0.68) neutral(0.002) HMMPfam_Vert_HS_TF ZNF34 80778 genome.wustl.edu 37 8 145999522 145999522 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_030580.3 -1 validated p.R271L 0.007 129 0% 130 26.2% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PLAA 9373 genome.wustl.edu 37 9 26905722 26905722 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001031689.2 -1 validated p.C725 0.997 338 0% 417 16.3% 22 22.7% - - - HMMPfam_PUL,superfamily_ARM-type_fold PLAA 9373 genome.wustl.edu 37 9 26925944 26925944 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001031689.2 -1 validated p.A250T 1.000 198 0% 281 19.6% 7 28.5% unknown(0) deleterious(0.01) - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 TOPORS 10210 genome.wustl.edu 37 9 32541988 32541988 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005802.3 -1 reviewed p.D845 0.971 673 0% 790 15.1% 12 8.3% - - - NULL TAF1L 138474 genome.wustl.edu 37 9 32630589 32630589 + Silent SNP A A C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_153809.2 -1 provisional p.S1663 1.000 404 0% 328 23.8% 0 - - - - NULL TLN1 7094 genome.wustl.edu 37 9 35722175 35722175 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006289.3 -1 reviewed p.R297C 0.997 171 0% 280 24.6% 14 7.1% benign(0.011) deleterious(0.03) neutral(0.365) PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 C9orf135 138255 genome.wustl.edu 37 9 72435901 72435901 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001010940.1 +1 validated p.R36C 1.000 37 0% 48 54.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL FGD3 89846 genome.wustl.edu 37 9 95772579 95772579 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001083536.1 +1 validated p.V297M 0.999 39 0% 45 20% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) RNF20 56254 genome.wustl.edu 37 9 104314839 104314839 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_019592.5 +1 reviewed p.R569* 1.000 625 0% 551 13.4% 11 9% - - - NULL ABCA1 19 genome.wustl.edu 37 9 107547790 107547790 + Frame_Shift_Del DEL A A - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005502.2 -1 reviewed p.Y2178fs 1.000 - - - - - - - - - NULL PAPPA 5069 genome.wustl.edu 37 9 119106824 119106824 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002581.3 +1 reviewed p.C1205Y 1.000 126 0% 176 29.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_SSF55486 ZBTB6 10773 genome.wustl.edu 37 9 125673304 125673304 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006626.4 -1 provisional p.G350C 1.000 106 0% 121 21.5% 4 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_C2H2 and C2HC zinc fingers DOLPP1 57171 genome.wustl.edu 37 9 131847867 131847867 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020438.4 +1 validated p.A145T 1.000 90 1.1% 99 30.3% 16 18.7% benign(0) tolerated(0.89) - HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase USP20 10868 genome.wustl.edu 37 9 132625468 132625468 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001008563.3 +1 validated p.P167 0.636 79 0% 139 28.1% 1 0% - - - HMMPfam_UCH,superfamily_SSF54001 SDCCAG3 10807 genome.wustl.edu 37 9 139301763 139301763 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001039707.1 -1 validated p.P218L 0.376 37 0% 45 33.3% 15 20% possibly_damaging(0.772) tolerated(0.07) deleterious(0.606) NULL SEC16A 9919 genome.wustl.edu 37 9 139368521 139368521 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014866.1 -1 validated p.A1183T 0.000 85 0% 91 16.5% 22 31.8% possibly_damaging(0.922) tolerated(0.57) neutral(0.378) NULL ANKRD30A 91074 genome.wustl.edu 37 10 37430800 37430800 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_052997.2 +1 validated p.P269 0.009 214 0% 239 15.9% 0 - - - - NULL RHOBTB1 9886 genome.wustl.edu 37 10 62648216 62648216 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014836.4 -1 reviewed p.A404T 0.350 52 0% 91 31.9% 0 - benign(0) tolerated(0.42) neutral(0.014) HMMSmart_BTB,superfamily_BTB/POZ_fold HK1 3098 genome.wustl.edu 37 10 71146123 71146123 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_033497.2 +1 reviewed p.C632 0.740 418 0.5% 507 14.2% 29 13.7% - - - HMMPfam_Hexokinase_1,superfamily_SSF53067 COL13A1 1305 genome.wustl.edu 37 10 71697454 71697454 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001130103.1 +1 reviewed p.G610C 1.000 96 0% 56 17.9% 2 0% unknown(0) - - HMMPfam_Collagen KCNMA1 3778 genome.wustl.edu 37 10 78761170 78761170 + Missense_Mutation SNP C C T rs145788902 by1000genomes TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000406533 -1 known p.R754H 1.000 177 0% 131 13% 0 - possibly_damaging(0.771) tolerated(0.37) neutral(0.305) NULL KLLN 100144748 genome.wustl.edu 37 10 89621895 89621895 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001126049.1 -1 validated p.T117I 0.000 28 0% 25 40% 0 - possibly_damaging(0.45) - - NULL PTEN 5728 genome.wustl.edu 37 10 89717672 89717672 + Nonsense_Mutation SNP C C T rs121909219 byCluster TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000371953 +1 known p.R233* 0.984 281 0% 314 23.2% 13 7.6% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 PTEN 5728 genome.wustl.edu 37 10 89720672 89720672 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000371953 +1 known p.V275L 1.000 175 0% 250 24% 1 0% benign(0) tolerated(0.59) neutral(0.004) superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 ACTA2 59 genome.wustl.edu 37 10 90707053 90707053 + Nonsense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001141945.1 -1 reviewed p.E74* 1.000 671 0% 760 17.1% 97 0% - - - HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain SORCS1 114815 genome.wustl.edu 37 10 108389034 108389034 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001013031.1 -1 reviewed p.G863D 1.000 137 0% 159 25.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PKD,HMMSmart_PKD,superfamily_PKD VAX1 11023 genome.wustl.edu 37 10 118893529 118893529 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001112704.1 -1 reviewed p.A332V 1.000 64 0% 78 17.9% 0 - unknown(0) tolerated(1) - NULL BUB3 9184 genome.wustl.edu 37 10 124922194 124922194 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004725.3 +1 reviewed p.R274L 1.000 288 0% 384 16.7% 87 29.8% benign(0.012) tolerated(0.06) neutral(0.323) HMMSmart_SM00320,superfamily_WD40 repeat-like CHST15 51363 genome.wustl.edu 37 10 125769686 125769686 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015892.2 -1 validated p.A555 0.891 44 0% 50 20% 4 25% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases MKI67 4288 genome.wustl.edu 37 10 129905806 129905806 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002417.4 -1 reviewed p.A1433V 0.000 750 0% 753 26.3% 7 0% benign(0) tolerated(0.38) neutral(0.018) HMMPfam_K167R OLFML1 283298 genome.wustl.edu 37 11 7530999 7530999 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_198474.3 +1 validated p.Q263 1.000 71 0% 82 15.9% 3 0% - - - HMMPfam_OLF,HMMSmart_SM00284 USH1C 10083 genome.wustl.edu 37 11 17517181 17517181 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_153676.3 -1 reviewed p.R864* 0.889 148 0% 124 25% 0 - - - - NULL EHF 26298 genome.wustl.edu 37 11 34668056 34668056 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012153.4 +1 validated p.W56* 1.000 93 0% 99 21.2% 26 3.8% - - - HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain CD44 960 genome.wustl.edu 37 11 35223242 35223242 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000610.3 +1 reviewed p.A354V 0.011 253 0% 305 13.8% 46 15.2% benign(0.15) tolerated(0.08) neutral(0.313) NULL MYBPC3 4607 genome.wustl.edu 37 11 47365113 47365113 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000256.3 -1 reviewed p.V385M 0.981 101 0% 121 20.7% 0 - possibly_damaging(0.691) deleterious(0.01) deleterious(0.653) HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726 FNBP4 23360 genome.wustl.edu 37 11 47772788 47772788 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015308.2 -1 validated p.Y231C 1.000 281 0% 314 23.9% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain OR4C6 219432 genome.wustl.edu 37 11 55433528 55433528 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001004704.1 +1 provisional p.M296V 0.578 213 0% 310 18.4% 0 - benign(0) deleterious(0.03) neutral(0.364) superfamily_Family A G protein-coupled receptor-like B3GAT3 26229 genome.wustl.edu 37 11 62388015 62388015 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012200.2 -1 reviewed p.P71T 0.998 45 0% 45 15.6% 30 13.3% benign(0.062) tolerated(0.31) neutral(0.031) NULL KAT5 10524 genome.wustl.edu 37 11 65486078 65486078 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_182710.1 +1 reviewed p.V428M 1.000 73 0% 76 18.4% 33 9% possibly_damaging(0.86) tolerated(0.18) neutral(0.389) HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat) TMEM134 80194 genome.wustl.edu 37 11 67235039 67235039 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_025124.2 -1 validated p.R88C 0.250 42 0% 67 16.4% 53 22.6% probably_damaging(0.997) tolerated(0.2) deleterious(0.515) HMMPfam_DUF872 RELT 84957 genome.wustl.edu 37 11 73101856 73101856 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032871.3 +1 reviewed p.A59 0.000 44 0% 48 14.6% 3 33.3% - - - HMMSmart_TNFR UVRAG 7405 genome.wustl.edu 37 11 75562961 75562961 + Silent SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003369.3 +1 reviewed p.R51 1.000 295 0% 416 11.5% 3 0% - - - HMMSmart_C2,superfamily_C2_CaLB FUT4 2526 genome.wustl.edu 37 11 94278550 94278550 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002033.3 +1 reviewed p.Q417H 1.000 27 0% 28 14.3% 2 50% probably_damaging(0.992) tolerated(0.54) neutral(0.455) HMMPfam_Glyco_transf_10 ARHGAP42 143872 genome.wustl.edu 37 11 100806958 100806958 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152432.2 +1 provisional p.R243* 0.993 153 0% 233 20.2% 0 - - - - NULL PDGFD 80310 genome.wustl.edu 37 11 104034555 104034555 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_025208.4 -1 reviewed p.R34H 1.000 118 0% 171 23.4% 6 0% possibly_damaging(0.859) deleterious(0) deleterious(0.776) PatternScan_TONB_DEPENDENT_REC_1 C11orf34 349633 genome.wustl.edu 37 11 112126171 112126171 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001145024.1 -1 provisional p.T109K 0.000 315 0% 373 82% 0 - possibly_damaging(0.484) tolerated(0.65) neutral(0.164) NULL FAM55D 54827 genome.wustl.edu 37 11 114453474 114453474 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001077639.1 -1 validated p.E122D 0.233 649 0% 808 14.5% 0 - benign(0.002) tolerated(0.35) neutral(0.021) superfamily_E set domains APOA5 116519 genome.wustl.edu 37 11 116662400 116662400 + Silent SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_052968.4 -1 reviewed p.T21 0.003 126 0% 149 26.8% 0 - - - - superfamily_SSF47162 ENSG00000244817 0 genome.wustl.edu 37 11 118184401 118184401 + RNA SNP T T G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000501549 -1 known NULL 0.000 63 0% 88 12.5% 0 - - - - - ARCN1 372 genome.wustl.edu 37 11 118463466 118463466 + Missense_Mutation SNP C C G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001655.4 +1 reviewed p.L343V 0.997 221 0% 282 11.3% 19 36.8% benign(0) tolerated(0.83) neutral(0.001) HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor TREH 11181 genome.wustl.edu 37 11 118531287 118531287 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000264029 -1 known p.Q355* 1.000 152 0% 186 29.6% 0 - - - - HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases TECTA 7007 genome.wustl.edu 37 11 121035999 121035999 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005422.2 +1 reviewed p.P1764S 1.000 702 0% 685 14.5% 0 - probably_damaging(0.978) tolerated(0.22) neutral(0.462) NULL ROBO3 64221 genome.wustl.edu 37 11 124747921 124747921 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022370.3 +1 reviewed p.A1025 0.197 37 0% 46 26.1% 0 - - - - NULL STT3A 3703 genome.wustl.edu 37 11 125478146 125478146 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152713.3 +1 validated p.F308S 1.000 290 0.3% 437 25.4% 75 20% benign(0) tolerated(0.44) neutral(0.013) HMMPfam_STT3 KCNJ5 3762 genome.wustl.edu 37 11 128781826 128781826 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000890.3 +1 reviewed p.R220W 1.000 154 0% 144 16.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_IRK,superfamily_Ig_E-set TMEM45B 120224 genome.wustl.edu 37 11 129722495 129722495 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138788.3 +1 provisional p.H40Y 0.001 202 0% 251 15.5% 6 50% benign(0.017) tolerated(0.36) neutral(0.021) NULL WNK1 65125 genome.wustl.edu 37 12 991165 991165 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018979.3 +1 reviewed p.R1100W 1.000 180 0% 240 21.7% 5 0% unknown(0) deleterious(0) - NULL CD4 920 genome.wustl.edu 37 12 6927663 6927663 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000616.3 +1 validated p.F411 0.001 98 0% 124 25.8% 4 0% - - - NULL CLEC2D 29121 genome.wustl.edu 37 12 9840596 9840596 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001004419.2 +1 reviewed p.D91N 0.371 212 0% 234 16.7% 4 0% benign(0.123) tolerated(0.32) neutral(0.034) HMMSmart_CLECT,superfamily_C-type_lectin_fold WBP11 51729 genome.wustl.edu 37 12 14947656 14947656 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_016312.2 -1 reviewed p.A179V 1.000 45 0% 43 39.5% 41 24.3% probably_damaging(0.978) deleterious(0.04) deleterious(0.769) NULL ASUN 55726 genome.wustl.edu 37 12 27066542 27066542 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018164.2 -1 validated p.Q551 0.944 684 0% 876 12.3% 15 0% - - - HMMPfam_DUF2151 LOC100288986 100288986 genome.wustl.edu 37 12 47628858 47628858 + Nonsense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 XM_002343197.1 -1 model p.Q212* 0.005 84 0% 77 24.7% 7 57.1% - - - NULL AQP6 363 genome.wustl.edu 37 12 50367155 50367155 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001652.3 +1 reviewed p.A67T 0.997 46 0% 41 24.4% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_MIP,superfamily_MIP C12orf44 60673 genome.wustl.edu 37 12 52467573 52467573 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001098673.1 +1 validated p.I47V 1.000 221 0% 239 31% 63 22.2% benign(0.004) tolerated(0.67) neutral(0.003) HMMPfam_DUF1649 KRT5 3852 genome.wustl.edu 37 12 52910981 52910981 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000424.3 -1 reviewed p.G376 0.000 201 0% 215 13% 107 0.9% - - - HMMPfam_Filament GLI1 2735 genome.wustl.edu 37 12 57864806 57864806 + Nonsense_Mutation SNP T T G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005269.2 +1 reviewed p.Y761* 0.014 32 0% 39 48.7% 0 - - - - NULL CDK17 5128 genome.wustl.edu 37 12 96680442 96680442 + Nonsense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002595.3 -1 reviewed p.G406* 1.000 220 0% 258 14% 3 33.3% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase STAB2 55576 genome.wustl.edu 37 12 103988219 103988219 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_017564.9 +1 reviewed p.R88C 1.000 222 0% 265 26.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL STAB2 55576 genome.wustl.edu 37 12 104086652 104086652 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_017564.9 +1 reviewed p.I1120M 0.244 318 0% 344 24.1% 0 - benign(0.235) deleterious(0.02) neutral(0.407) HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1 CMKLR1 1240 genome.wustl.edu 37 12 108686010 108686010 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001142343.1 -1 validated p.V244M 1.000 160 0% 181 42.5% 1 0% benign(0.406) deleterious(0.03) deleterious(0.495) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TBX5 6910 genome.wustl.edu 37 12 114836499 114836499 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000192.3 -1 reviewed p.A130V 1.000 69 0% 90 44.4% 0 - possibly_damaging(0.921) deleterious(0.04) deleterious(0.720) HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors CAMKK2 10645 genome.wustl.edu 37 12 121712016 121712016 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006549.3 -1 reviewed p.S105Y 1.000 16 0% 19 36.8% 8 0% benign(0.305) deleterious(0.01) deleterious(0.501) NULL TMEM120B 144404 genome.wustl.edu 37 12 122213624 122213624 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001080825.2 +1 validated p.P339L 0.004 64 0% 74 17.6% 1 0% possibly_damaging(0.913) deleterious(0) deleterious(0.809) NULL RIMBP2 23504 genome.wustl.edu 37 12 130941156 130941156 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015347.4 -1 validated p.H64 0.997 44 0% 33 30.3% 1 0% - - - NULL SACS 26278 genome.wustl.edu 37 13 23908277 23908277 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014363.4 -1 reviewed p.N3246 0.960 356 0% 483 15.1% 0 - - - - NULL BRCA2 675 genome.wustl.edu 37 13 32913026 32913026 + Missense_Mutation SNP C C T rs80358684 TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000059.3 +1 reviewed p.R1512C 0.000 87 1.1% 134 53% 1 0% benign(0) tolerated(0.18) neutral(0.056) NULL BRCA2 675 genome.wustl.edu 37 13 32914477 32914477 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000059.3 +1 reviewed p.N1995 1.000 76 0% 85 23.5% 0 - - - - HMMPfam_BRCA2 NBEA 26960 genome.wustl.edu 37 13 35733686 35733686 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015678.4 +1 validated p.N1126 0.989 241 0% 336 27.7% 0 - - - - superfamily_ARM repeat RNF113B 140432 genome.wustl.edu 37 13 98829332 98829332 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_178861.4 -1 validated p.G53 0.005 14 0% 18 38.9% 0 - - - - NULL TMEM55B 90809 genome.wustl.edu 37 14 20927580 20927580 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001100814.1 -1 validated p.R196H 1.000 465 0% 600 19.8% 31 32.2% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Tmemb_55A PRKD1 5587 genome.wustl.edu 37 14 30194848 30194850 + In_Frame_Del DEL ATC ATC - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 ATC ATC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002742.2 -1 validated p.D99in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL NID2 22795 genome.wustl.edu 37 14 52520942 52520942 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_007361.3 -1 validated p.A289T 0.000 80 0% 84 20.2% 1 0% benign(0) tolerated(0.57) neutral(0.006) NULL HSPA2 3306 genome.wustl.edu 37 14 65008064 65008064 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_021979.3 +1 validated p.T166M 1.000 16 0% 27 33.3% 16 25% possibly_damaging(0.91) deleterious(0) deleterious(0.807) HMMPfam_HSP70,superfamily_SSF53067 GALNTL1 57452 genome.wustl.edu 37 14 69814781 69814781 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000448469 +1 known p.A534V 0.116 52 1.9% 52 19.2% 0 - benign(0.013) tolerated(0.39) neutral(0.017) NULL CEP128 145508 genome.wustl.edu 37 14 81302669 81302669 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152446.3 -1 validated p.R313C 0.993 479 0% 640 12.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL DYNC1H1 1778 genome.wustl.edu 37 14 102483836 102483836 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001376.4 +1 reviewed p.S2724 0.865 203 0% 205 14.1% 13 15.3% - - - HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540 CDC42BPB 9578 genome.wustl.edu 37 14 103470316 103470316 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006035.3 -1 reviewed p.D132 1.000 48 0% 74 18.9% 18 16.6% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase TMEM87A 25963 genome.wustl.edu 37 15 42556349 42556349 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015497.3 -1 validated p.S115Y 1.000 409 0.2% 581 11.4% 12 25% probably_damaging(0.996) tolerated(0.25) deleterious(0.498) NULL USP8 9101 genome.wustl.edu 37 15 50751197 50751197 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001128610.1 +1 validated p.R112S 1.000 270 0% 389 22.9% 2 50% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_DUF1873 DPP8 54878 genome.wustl.edu 37 15 65793045 65793045 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_197960.2 -1 reviewed p.G165R 0.998 478 0% 571 13.7% 2 50% probably_damaging(0.979) deleterious(0) deleterious(0.867) superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain STRA6 64220 genome.wustl.edu 37 15 74481532 74481532 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001142617.1 -1 reviewed p.A338 0.032 51 0% 52 32.7% 41 14.6% - - - NULL ACSBG1 23205 genome.wustl.edu 37 15 78486864 78486864 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015162.3 -1 reviewed p.A146D 1.000 101 0% 135 15.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like DET1 55070 genome.wustl.edu 37 15 89073985 89073985 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_017996.3 -1 validated p.R329C 1.000 59 0% 93 20.4% 3 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Det1 DET1 55070 genome.wustl.edu 37 15 89074021 89074021 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_017996.3 -1 validated p.R317W 1.000 77 0% 100 27% 5 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Det1 IGFALS 3483 genome.wustl.edu 37 16 1841079 1841079 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004970.2 -1 reviewed p.T447M 0.712 4 0.000 7 0.571 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047 NMRAL1 57407 genome.wustl.edu 37 16 4519459 4519459 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020677.3 -1 provisional p.Q16H 0.996 85 0% 116 33.6% 46 19.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NmrA,superfamily_NAD(P)-bd PARN 5073 genome.wustl.edu 37 16 14676087 14676087 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002582.2 -1 reviewed p.Y381 0.996 211 0% 393 16.3% 15 20% - - - HMMPfam_CAF1,superfamily_Ribonuclease H-like BFAR 51283 genome.wustl.edu 37 16 14742253 14742253 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_016561.2 +1 validated p.I91T 1.000 136 0% 165 24.2% 25 8% benign(0.002) tolerated(0.26) neutral(0.034) superfamily_RING/U-box ABCC1 4363 genome.wustl.edu 37 16 16108454 16108454 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004996.3 +1 reviewed p.L153P 1.000 243 0% 309 19.1% 18 16.6% probably_damaging(0.968) deleterious(0) deleterious(0.855) NULL XYLT1 64131 genome.wustl.edu 37 16 17228564 17228564 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022166.3 -1 reviewed p.R598H 1.000 133 0% 141 14.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL GGA2 23062 genome.wustl.edu 37 16 23505688 23505688 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015044.4 -1 reviewed p.A63V 1.000 176 0% 163 44.2% 13 23% possibly_damaging(0.939) deleterious(0) deleterious(0.829) HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS SNX29P1 100652781 genome.wustl.edu 37 16 29370630 29370630 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000507381 +1 known p.S25Y 1.000 650 0% 749 10.7% 0 - probably_damaging(0.959) deleterious(0) deleterious(0.847) HMMSmart_SM00593 ZNF688 146542 genome.wustl.edu 37 16 30581727 30581727 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_145271.3 -1 validated p.P114Q 0.001 39 0% 37 29.7% 16 12.5% benign(0.071) tolerated(0.6) neutral(0.009) NULL ZNF646 9726 genome.wustl.edu 37 16 31091097 31091097 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014699.3 +1 validated p.K1151M 0.419 105 0% 69 20.3% 6 16.6% possibly_damaging(0.888) deleterious(0.04) deleterious(0.696) NULL ENSG00000198555 0 genome.wustl.edu 37 16 33784516 33784516 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000359871 +1 known p.R461* 1.000 79 0% 75 22.7% 2 0% - - - HMMPfam_SNF GPT2 84706 genome.wustl.edu 37 16 46952547 46952547 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_133443.2 +1 validated p.N305 0.962 61 0% 87 25.3% 29 20.6% - - - HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases GPR97 222487 genome.wustl.edu 37 16 57712105 57712105 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_170776.4 +1 validated p.D123 0.000 113 0% 133 15.8% 0 - - - - NULL KIAA0664 23277 genome.wustl.edu 37 17 2597826 2597826 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015229.3 -1 validated p.G923V 0.971 60 0% 77 13% 19 21% benign(0.269) tolerated(0.08) neutral(0.329) NULL ALOX15 246 genome.wustl.edu 37 17 4536468 4536468 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001140.3 -1 validated p.A464V 0.479 198 0% 213 14.6% 0 - benign(0.225) deleterious(0) neutral(0.467) HMMPfam_Lipoxygenase,superfamily_Lipoxygenase SLC16A11 162515 genome.wustl.edu 37 17 6945388 6945388 + Silent SNP T T A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_153357.1 -1 validated p.G371 0.232 29 0% 38 39.5% 0 - - - - HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter ACADVL 37 genome.wustl.edu 37 17 7124899 7124899 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000018.2 +1 reviewed p.V174M 0.966 79 0% 80 13.8% 131 13.7% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like NEURL4 84461 genome.wustl.edu 37 17 7230793 7230794 + Frame_Shift_Del DEL AG AG - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032442.2 -1 validated p.S231fs 0.059:0.136 - - - - - - - - - NULL MPRIP 23164 genome.wustl.edu 37 17 17049353 17049353 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015134.2 +1 validated p.D385N 1.000 266 0% 306 42.2% 15 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RAI1 10743 genome.wustl.edu 37 17 17698901 17698901 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_030665.3 +1 reviewed p.S880N 1.000 31 0% 33 12.1% 9 11.1% benign(0.323) deleterious(0.02) deleterious(0.484) NULL NOS2 4843 genome.wustl.edu 37 17 26096041 26096041 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000625.4 -1 reviewed p.E666K 1.000 43 0% 58 46.6% 0 - possibly_damaging(0.926) deleterious(0) deleterious(0.819) HMMPfam_Flavodoxin_1,superfamily_Flavoproteins ADAP2 55803 genome.wustl.edu 37 17 29250074 29250074 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018404.2 +1 validated p.D71N 0.994 244 0% 272 17.6% 0 - benign(0.355) tolerated(0.09) neutral(0.409) HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain NF1 4763 genome.wustl.edu 37 17 29684089 29684089 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001042492.2 +1 reviewed p.A2617V 1.000 243 0% 328 19.8% 10 0% benign(0.009) tolerated(0.3) neutral(0.029) NULL LIG3 3980 genome.wustl.edu 37 17 33328949 33328949 + Nonsense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_013975.2 +1 reviewed p.E834* 1.000 93 0% 105 12.4% 12 0% - - - NULL ARHGAP23 57636 genome.wustl.edu 37 17 36623337 36623337 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020876.1 +1 provisional p.P377 0.599 24 0% 30 26.7% 1 0% - - - NULL AOC3 8639 genome.wustl.edu 37 17 41003572 41003572 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003734.2 +1 reviewed p.V71A 1.000 52 0% 56 10.7% 0 - probably_damaging(0.983) deleterious(0.04) deleterious(0.778) HMMPfam_Cu_amine_oxidN2,superfamily_Cu_amine_oxidase_N-reg RSAD1 55316 genome.wustl.edu 37 17 48557407 48557407 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018346.1 +1 provisional p.G146R 0.003 58 0% 75 13.3% 11 9% benign(0) tolerated(1) - HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114 SPATA20 64847 genome.wustl.edu 37 17 48629483 48629483 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022827.2 +1 provisional p.G633 0.020 56 0% 58 15.5% 22 9% - - - superfamily_Six-hairpin glycosidases LUC7L3 51747 genome.wustl.edu 37 17 48823303 48823304 + Frame_Shift_Del DEL AG AG - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006107.3 +1 reviewed p.R306fs 0.994:0.998 - - - - - - - - - NULL LPO 4025 genome.wustl.edu 37 17 56342203 56342203 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_006151.2 +1 reviewed p.A463T 1.000 149 0.7% 189 16.9% 5 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_An_peroxidase,superfamily_Peroxidase_super RNF43 54894 genome.wustl.edu 37 17 56440011 56440011 + Splice_Site SNP T T A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_017763.4 -1 validated e5-2 1.000 125 0% 141 39.7% 0 - - - - - TBX4 9496 genome.wustl.edu 37 17 59544956 59544956 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018488.2 +1 reviewed p.R163W 1.000 47 0% 68 13.2% 0 - probably_damaging(0.956) deleterious(0) deleterious(0.844) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2 RHBDF2 79651 genome.wustl.edu 37 17 74469373 74469373 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024599.3 -1 validated p.M619I 1.000 128 0% 112 11.6% 25 32% possibly_damaging(0.949) tolerated(0.06) deleterious(0.716) NULL CBX2 84733 genome.wustl.edu 37 17 77757651 77757651 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005189.2 +1 reviewed p.R137C 1.000 56 0% 71 29.6% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CBX2 84733 genome.wustl.edu 37 17 77757653 77757653 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005189.2 +1 reviewed p.R137 0.001 50 0% 70 30% 6 0% - - - NULL RNF213 57674 genome.wustl.edu 37 17 78306008 78306008 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000508628 +1 known p.A1240 0.000 29 0% 45 22.2% 1 0% - - - NULL NPC1 4864 genome.wustl.edu 37 18 21152117 21152117 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000271.4 -1 reviewed p.N70D 1.000 140 0% 202 15.3% 4 0% benign(0) tolerated(0.35) neutral(0.021) NULL DTNA 1837 genome.wustl.edu 37 18 32395926 32395926 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001390.4 +1 reviewed p.P219 0.002 348 0% 437 23.3% 1 0% - - - HMMPfam_efhand_2,superfamily_EF-hand EPG5 57724 genome.wustl.edu 37 18 43458370 43458370 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020964.2 -1 validated p.P1971 0.965 253 0% 293 18.1% 2 0% - - - NULL CDH20 28316 genome.wustl.edu 37 18 59157872 59157872 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_031891.2 +1 reviewed p.T29M 0.009 179 0% 237 28.7% 0 - possibly_damaging(0.555) tolerated(0.06) deleterious(0.512) NULL FAM69C 125704 genome.wustl.edu 37 18 72114037 72114037 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001044369.2 -1 validated p.A227V 0.989 40 0% 56 23.2% 0 - probably_damaging(0.995) tolerated(0.24) deleterious(0.495) NULL C19orf21 126353 genome.wustl.edu 37 19 757734 757734 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_173481.2 +1 predicted p.A263V 0.000 23 0% 22 22.7% 20 15% benign(0.072) tolerated(0.52) neutral(0.014) NULL ENSG00000207507 0 genome.wustl.edu 37 19 893586 893588 + RNA DEL TTT TTT - rs78469799 TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 TTT TTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000384776 +1 known NULL 0.863:0.853:0.816 - - - - - - - - - - ENSG00000005206 0 genome.wustl.edu 37 19 2340154 2340155 + Frame_Shift_Ins INS - - C rs5826760 byCluster;by1000genomes TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000452401 +1 known p.F274fs 1.000:0.997 - - - - - - - - - HMMSmart_SM00730,HMMPfam_Peptidase_A22B THOP1 7064 genome.wustl.edu 37 19 2810361 2810361 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_003249.3 +1 provisional p.S505 0.015 61 0% 58 12.1% 36 16.6% - - - HMMPfam_Peptidase_M3,superfamily_SSF55486 ZNF556 80032 genome.wustl.edu 37 19 2878237 2878237 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_024967.1 +1 provisional p.C427 0.332 89 0% 94 27.7% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MFSD12 126321 genome.wustl.edu 37 19 3542923 3542923 + Silent SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_021731.2 -1 validated p.S491 0.005 90 0% 107 23.4% 4 0% - - - NULL EEF2 1938 genome.wustl.edu 37 19 3979938 3979938 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001961.3 -1 reviewed p.A491 0.899 32 0% 57 21.1% 1327 25.6% - - - superfamily_Translation proteins PIAS4 51588 genome.wustl.edu 37 19 4012977 4012977 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015897.2 +1 provisional p.G28 1.000 43 0% 63 31.7% 18 27.7% - - - HMMPfam_SAP,HMMSmart_SAP MPND 84954 genome.wustl.edu 37 19 4359979 4359979 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032868.4 +1 validated p.V466I 0.000 36 0% 40 25% 14 28.5% benign(0) tolerated(0.23) neutral(0.042) NULL MYO1F 4542 genome.wustl.edu 37 19 8618246 8618246 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_012335.3 -1 validated p.G134 0.038 180 0% 195 46.2% 1 0% - - - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases RAVER1 125950 genome.wustl.edu 37 19 10434174 10434174 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_133452.2 -1 validated p.A292 0.156 17 0% 16 37.5% 34 8.8% - - - HMMSmart_SM00360,superfamily_RNA-binding domain RBD DCAF15 90379 genome.wustl.edu 37 19 14065247 14065247 + Silent SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138353.2 +1 provisional p.A76 0.994 47 0% 46 23.9% 10 30% - - - NULL LPHN1 22859 genome.wustl.edu 37 19 14268166 14268166 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001008701.2 -1 reviewed p.R886L 1.000 100 0% 124 28.2% 15 6.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_2 DDX39A 10212 genome.wustl.edu 37 19 14523893 14523893 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005804.2 -1 reviewed p.R47Q 1.000 130 0% 156 11.5% 28 39.2% possibly_damaging(0.44) tolerated(0.23) neutral(0.185) superfamily_SSF52540 PKN1 5585 genome.wustl.edu 37 19 14580247 14580248 + Frame_Shift_Del DEL GT GT - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 GT GT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_213560.1 +1 reviewed p.C698fs 1.000:1.000 - - - - - - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SIN3B 23309 genome.wustl.edu 37 19 16974569 16974569 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015260.1 +1 provisional p.E481K 1.000 88 0% 88 11.4% 13 23% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HDAC_interact,HMMSmart_SM00761 NR2F6 2063 genome.wustl.edu 37 19 17351572 17351572 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005234.3 -1 validated p.S94Y 1.000 122 0.8% 137 21.9% 81 13.5% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain) USHBP1 83878 genome.wustl.edu 37 19 17375054 17375054 + Splice_Site SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_031941.3 -1 validated e1+1 0.835 76 0% 69 29% 0 - - - - - DDX49 54555 genome.wustl.edu 37 19 19038639 19038639 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_019070.4 +1 validated p.N389 1.000 149 0% 150 14.7% 58 13.7% - - - superfamily_SSF52540 LPAR2 9170 genome.wustl.edu 37 19 19735210 19735210 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004720.5 -1 reviewed p.R304H 1.000 59 0% 77 22.1% 36 19.4% possibly_damaging(0.938) deleterious(0.01) deleterious(0.789) superfamily_SSF81321 GMIP 51291 genome.wustl.edu 37 19 19740808 19740808 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_016573.2 -1 reviewed p.P959 0.000 37 0% 55 20% 21 19% - - - NULL ZNF181 339318 genome.wustl.edu 37 19 35232265 35232265 + Nonsense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001029997.3 +1 validated p.G327* 1.000 224 0% 203 12.3% 1 100% - - - HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF383 163087 genome.wustl.edu 37 19 37733693 37733693 + Silent SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152604.1 +1 provisional p.F185 0.854 138 0% 156 18.6% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CYP2B6 1555 genome.wustl.edu 37 19 41510225 41510225 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000767.4 +1 reviewed p.R120C 0.000 301 0% 381 24.4% 0 - possibly_damaging(0.895) deleterious(0.01) deleterious(0.758) HMMPfam_p450,superfamily_Cytochrome_P450 CYP2B6 1555 genome.wustl.edu 37 19 41515911 41515911 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000767.4 +1 reviewed p.A279T 0.000 157 0% 217 16.1% 0 - benign(0) tolerated(0.1) neutral(0.286) HMMPfam_p450,superfamily_Cytochrome_P450 CADM4 199731 genome.wustl.edu 37 19 44131331 44131331 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_145296.1 -1 validated p.T117 0.982 286 0% 265 13.6% 38 23.6% - - - HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 ZNF229 7772 genome.wustl.edu 37 19 44933000 44933000 + Silent SNP G G A rs189094366 by1000genomes TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014518.2 -1 validated p.G652 0.086 153 0% 197 18.3% 1 0% - - - superfamily_C2H2 and C2HC zinc fingers MYH14 79784 genome.wustl.edu 37 19 50789839 50789839 + Missense_Mutation SNP C C G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001077186.1 +1 reviewed p.T1514R 0.898 31 0% 37 40.5% 43 48.8% possibly_damaging(0.492) tolerated(0.32) neutral(0.188) HMMPfam_Myosin_tail_1 POLD1 5424 genome.wustl.edu 37 19 50910411 50910411 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002691.2 +1 validated p.V556I 1.000 38 0% 24 29.2% 12 0% benign(0.053) tolerated(0.94) neutral(0.004) HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,superfamily_SSF56672 MYBPC2 4606 genome.wustl.edu 37 19 50957558 50957558 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_004533.3 +1 validated p.S649L 0.378 24 0% 26 30.8% 0 - benign(0.289) deleterious(0.04) neutral(0.438) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like ZNF766 90321 genome.wustl.edu 37 19 52793730 52793730 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001010851.2 +1 validated p.G229D 0.000 101 0% 119 23.5% 1 0% benign(0.004) tolerated(0.19) neutral(0.050) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PRKCG 5582 genome.wustl.edu 37 19 54394955 54394955 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002739.3 +1 reviewed p.M186T 1.000 203 0.5% 233 18% 0 - probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB TTYH1 57348 genome.wustl.edu 37 19 54930463 54930463 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001005367.1 +1 reviewed p.V96 0.949 24 0% 41 17.1% 0 - - - - HMMPfam_Tweety BRSK1 84446 genome.wustl.edu 37 19 55817694 55817694 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_032430.1 +1 validated p.S655 0.996 54 0% 67 20.9% 1 0% - - - NULL CCDC106 29903 genome.wustl.edu 37 19 56163994 56163994 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_013301.2 +1 validated p.R242H 1.000 17 0% 17 35.3% 34 29.4% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL NLRP11 204801 genome.wustl.edu 37 19 56321510 56321511 + Frame_Shift_Del DEL CT CT - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_145007.3 -1 validated p.R155fs 0.036:0.013 - - - - - - - - - HMMPfam_NACHT ZNF749 388567 genome.wustl.edu 37 19 57956648 57956650 + In_Frame_Del DEL TTA TTA - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 TTA TTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001023561.2 +1 provisional p.I713in_frame_del 0.145:0.001:0.000 - - - - - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ATRN 8455 genome.wustl.edu 37 20 3529951 3529951 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_139321.2 +1 reviewed p.M360V 1.000 334 0% 497 40.2% 6 66.6% benign(0) tolerated(0.19) neutral(0.050) HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain ENSG00000251955 0 genome.wustl.edu 37 20 17168248 17168248 + RNA SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000516146 +1 novel NULL 0.262 19 0.000 9 0.444 0 - - - - - PCSK2 5126 genome.wustl.edu 37 20 17389940 17389940 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002594.2 +1 reviewed p.N192 0.782 361 0% 334 26.9% 0 - - - - HMMPfam_Peptidase_S8,superfamily_Subtilisin-like MYLK2 85366 genome.wustl.edu 37 20 30419615 30419615 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_033118.3 +1 reviewed p.E512K 1.000 127 0% 170 15.9% 1 0% probably_damaging(0.976) deleterious(0.04) deleterious(0.767) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ASXL1 171023 genome.wustl.edu 37 20 31024926 31024926 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015338.5 +1 reviewed p.V1471M 1.000 113 0% 149 43.6% 20 65% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CTNNBL1 56259 genome.wustl.edu 37 20 36407692 36407692 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_030877.3 +1 reviewed p.R329H 1.000 482 0% 592 23.6% 13 23% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_ARM repeat DHX35 60625 genome.wustl.edu 37 20 37657133 37657133 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_021931.2 +1 reviewed p.G625V 1.000 249 0% 335 14.6% 3 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF1605 PABPC1L 80336 genome.wustl.edu 37 20 43550311 43550311 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001124756.1 +1 provisional p.R272Q 1.000 55 0% 60 20% 2 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL PIGT 51604 genome.wustl.edu 37 20 44047614 44047614 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015937.4 +1 reviewed p.A163V 1.000 262 0% 340 13.8% 143 25.8% unknown(0) tolerated(0.89) - HMMPfam_Gpi16 TSHZ2 128553 genome.wustl.edu 37 20 51871373 51871376 + Frame_Shift_Del DEL AGTT AGTT - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 AGTT AGTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_173485.4 +1 validated p.L460fs 0.983:0.844:0.000:0.000 - - - - - - - - - NULL CYP24A1 1591 genome.wustl.edu 37 20 52781092 52781092 + Missense_Mutation SNP G G A rs16999131 byCluster TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000782.4 -1 reviewed p.T248M 0.993 333 0% 414 42.3% 38 36.8% benign(0.069) deleterious(0.02) neutral(0.388) HMMPfam_p450,superfamily_Cytochrome_P450 PMEPA1 56937 genome.wustl.edu 37 20 56234686 56234686 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020182.3 -1 validated p.T59 0.906 33 0% 48 20.8% 114 21.9% - - - NULL CDH26 60437 genome.wustl.edu 37 20 58569533 58569533 + Nonsense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000370991 +1 known p.G144* 0.690 65 0% 76 21.1% 0 - probably_damaging(0.998) deleterious(0.04) deleterious(0.823) HMMPfam_Cadherin,superfamily_Cadherin-like RIPK4 54101 genome.wustl.edu 37 21 43176748 43176748 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_020639.2 -1 reviewed p.P137 0.268 48 0% 50 36% 7 0% - - - superfamily_Kinase_like,HMMPfam_Pkinase LSS 4047 genome.wustl.edu 37 21 47628170 47628170 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001001438.2 -1 reviewed p.R438C 0.911 194 0% 188 20.2% 18 16.6% benign(0.007) deleterious(0.04) neutral(0.349) superfamily_Terp_cyc_toroid LOC100288309 100288309 genome.wustl.edu 37 22 19163568 19163568 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 XM_002344193.1 +1 model p.H47Y 0.996 71 0% 83 20.5% 179 29% - - - NULL RNF185 91445 genome.wustl.edu 37 22 31601320 31601320 + RNA SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NR_024209.1 +1 validated NULL 0.000 61 0% 83 27.7% 12 25% - - - - RBFOX2 23543 genome.wustl.edu 37 22 36156026 36156026 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001082578.1 -1 reviewed p.A340T 1.000 137 0% 168 16.7% 10 10% benign(0.038) deleterious(0.02) neutral(0.385) NULL CSF2RB 1439 genome.wustl.edu 37 22 37326776 37326776 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000395.2 +1 reviewed p.C306R 0.438 16 0% 21 23.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Fibronectin type III CDC42EP1 11135 genome.wustl.edu 37 22 37964409 37964429 + In_Frame_Del DEL CAGCGCCTGCTGCAAACCCCT CAGCGCCTGCTGCAAACCCCT - novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 CAGCGCCTGCTGCAAACCCCT CAGCGCCTGCTGCAAACCCCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152243.2 +1 reviewed p.ANPSAPA257in_frame_del 0.003:0.000:0.000:0.000:0.000:0.019:0.024:0.016:0.013:0.013:0.000:0.000:0.000:0.001:0.000:0.001:0.004:0.011:0.056:0.092:0.133 - - - - - - - - - NULL FAM83F 113828 genome.wustl.edu 37 22 40415332 40415332 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138435.2 +1 validated p.R217Q 0.937 125 0% 167 38.3% 1 0% possibly_damaging(0.528) tolerated(0.38) neutral(0.196) HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease TNRC6B 23112 genome.wustl.edu 37 22 40696540 40696540 + Nonsense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_015088.2 +1 validated p.Q1154* 1.000 269 0% 370 22.7% 4 25% - - - NULL EFCAB6 64800 genome.wustl.edu 37 22 44062998 44062998 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_022785.2 -1 validated p.H657Y 0.000 546 0% 596 24.7% 0 - benign(0.014) tolerated(0.05) neutral(0.346) HMMSmart_SM00054,superfamily_EF-hand ZBED4 9889 genome.wustl.edu 37 22 50279042 50279042 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014838.2 +1 validated p.V578M 0.990 75 0% 78 24.4% 9 33.3% possibly_damaging(0.814) deleterious(0.02) deleterious(0.691) HMMPfam_zf-BED,HMMSmart_SM00614 SBF1 6305 genome.wustl.edu 37 22 50906297 50906297 + Missense_Mutation SNP A A G novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002972.2 -1 validated p.F66S 1.000 42 0% 56 17.9% 6 16.6% probably_damaging(0.965) deleterious(0) deleterious(0.851) HMMPfam_uDENN,HMMSmart_SM00800 IL3RA 3563 genome.wustl.edu 37 X 1471069 1471069 + Silent SNP G G A rs17880680 TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002183.2 +1 reviewed p.A125 0.000 271 0% 333 29.4% 4 25% - - - HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_FN_III-like AKAP17A 8227 genome.wustl.edu 37 X 1719945 1719945 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_005088.2 +1 validated p.V516M 0.001 23 0% 29 17.2% 10 40% benign(0.229) - - NULL FAM47B 170062 genome.wustl.edu 37 X 34962716 34962716 + Missense_Mutation SNP A A T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_152631.2 +1 validated p.I590F 0.474 313 0% 229 11.8% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL PORCN 64840 genome.wustl.edu 37 X 48368317 48368317 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_203475.1 +1 reviewed p.L37I 1.000 46 0% 46 19.6% 20 25% possibly_damaging(0.779) tolerated(0.42) neutral(0.305) NULL PLP2 5355 genome.wustl.edu 37 X 49029779 49029779 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_002668.2 +1 reviewed p.T98 1.000 284 0.4% 368 18.2% 195 61% - - - HMMPfam_MARVEL USP27X 389856 genome.wustl.edu 37 X 49645375 49645375 + Silent SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001145073.1 +1 provisional p.R155 0.262 205 0% 200 26.5% 3 0% - - - HMMPfam_UCH,superfamily_SSF54001 AR 367 genome.wustl.edu 37 X 66765542 66765542 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000044.2 +1 reviewed p.L185P 1.000 25 0% 57 26.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Androgen_recep OGT 8473 genome.wustl.edu 37 X 70774430 70774430 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_181672.2 +1 reviewed p.R239H 1.000 356 0% 521 23.6% 14 35.7% probably_damaging(1) tolerated(0.15) deleterious(0.741) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like PABPC5 140886 genome.wustl.edu 37 X 90691338 90691338 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_080832.2 +1 reviewed p.K254 0.995 175 0% 215 25.1% 0 - - - - HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD SRPX2 27286 genome.wustl.edu 37 X 99917286 99917286 + Missense_Mutation SNP C C T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_014467.2 +1 reviewed p.R93W 1.000 203 0% 292 14% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module DRP2 1821 genome.wustl.edu 37 X 100509879 100509880 + Frame_Shift_Ins INS - - AC novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001939.2 +1 reviewed p.S719fs 1.000:1.000 - - - - - - - - - NULL RBMXL3 139804 genome.wustl.edu 37 X 114426760 114426760 + Missense_Mutation SNP G G C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001145346.1 +1 validated p.R919P 0.223 16 0% 19 26.3% 0 - possibly_damaging(0.809) deleterious(0) deleterious(0.749) NULL GRIA3 2892 genome.wustl.edu 37 X 122599620 122599620 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000264357 +1 known p.S807I 1.000 294 0% 317 47.3% 0 - benign(0.269) tolerated(0.06) neutral(0.351) HMMPfam_Lig_chan ACTRT1 139741 genome.wustl.edu 37 X 127185478 127185478 + Missense_Mutation SNP C C A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138289.3 -1 reviewed p.E236D 0.000 167 0% 180 21.7% 0 - benign(0.001) tolerated(0.1) neutral(0.286) HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 MBNL3 55796 genome.wustl.edu 37 X 131525093 131525093 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_018388.3 -1 reviewed p.R185C 1.000 137 0% 176 15.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger LOC100131128 100131128 genome.wustl.edu 37 X 133300928 133300928 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 XM_001719937.2 +1 model p.R106Q 1.000 237 0% 221 17.2% 1 0% - - - HMMPfam_zf-Tim10_DDP FAM122C 159091 genome.wustl.edu 37 X 133979420 133979420 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_138819.3 +1 validated p.G112C 0.012 98 0% 154 18.8% 0 - probably_damaging(0.992) tolerated(0.25) deleterious(0.484) NULL ATP11C 286410 genome.wustl.edu 37 X 138813831 138813831 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 ENST00000433868 -1 known p.R160* 1.000 400 0.3% 386 37.8% 3 0% - - - NULL NSDHL 50814 genome.wustl.edu 37 X 152014976 152014976 + Missense_Mutation SNP G G T novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001129765.1 +1 reviewed p.Q36H 0.012 233 0% 264 17.8% 6 0% possibly_damaging(0.823) deleterious(0.03) deleterious(0.676) NULL ATP2B3 492 genome.wustl.edu 37 X 152807350 152807350 + Silent SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001001344.2 +1 reviewed p.A210 0.221 70 0% 98 12.2% 0 - - - - HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M L1CAM 3897 genome.wustl.edu 37 X 153132202 153132202 + Missense_Mutation SNP G G A novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_000425.3 -1 reviewed p.T778M 0.985 105 0% 98 34.7% 1 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SLC10A3 8273 genome.wustl.edu 37 X 153716714 153716714 + Missense_Mutation SNP T T C novel TCGA-D1-A17M-01A-21D-A12J-09 TCGA-D1-A17M-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx afa81d2a-5cbd-4b24-b764-7ee19fd75130 c5a3eca5-500e-494c-99dc-59b0133bab76 NM_001142392.1 -1 reviewed p.E189G 1.000 56 0% 61 18% 37 0% probably_damaging(0.985) deleterious(0.02) deleterious(0.815) NULL