Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain PRDM16 63976 genome.wustl.edu 37 1 3328334 3328334 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_022114.3 +1 reviewed p.R525W 0.999 145 0% 141 25.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RGS21 431704 genome.wustl.edu 37 1 192316470 192316470 + Silent SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001039152.3 +1 validated p.A13 0.317 238 0% 182 31.3% 0 - - - - superfamily_Regulat_G_prot_signal_superfam PGBD5 79605 genome.wustl.edu 37 1 230492670 230492670 + Silent SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_024554.3 -1 reviewed p.F273 0.952 40 0% 47 40.4% 1 100% - - - NULL OR2T6 254879 genome.wustl.edu 37 1 248550982 248550982 + Nonsense_Mutation SNP G G T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001005471.1 +1 provisional p.G25* 0.001 556 0.4% 525 33.1% 0 - - - - superfamily_SSF81321 EIF2AK2 5610 genome.wustl.edu 37 2 37336399 37336399 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001135651.1 -1 validated p.A473T 0.899 272 0% 247 32% 7 42.8% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SSFA2 6744 genome.wustl.edu 37 2 182767195 182767195 + Splice_Site SNP T T C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001130445.1 +1 validated e8+2 1.000 103 0% 66 25.8% 1 100% - - - - TMEM237 65062 genome.wustl.edu 37 2 202507388 202507388 + Silent SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000426684 -1 known p.C18 0.001 32 0% 33 15.2% 0 - - - - NULL RQCD1 9125 genome.wustl.edu 37 2 219445458 219445458 + Silent SNP T T C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_005444.1 +1 provisional p.L67 1.000 208 0% 204 35.8% 19 52.6% - - - HMMPfam_Rcd1,superfamily_ARM repeat FREM3 166752 genome.wustl.edu 37 4 144619676 144619676 + Missense_Mutation SNP T T C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000329798 -1 known p.Y718C 0.990 300 0% 281 19.9% 0 - benign(0.02) deleterious(0.02) neutral(0.384) NULL FAT1 2195 genome.wustl.edu 37 4 187629337 187629338 + Frame_Shift_Ins INS - - A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_005245.3 -1 reviewed p.R548fs 0.920:0.875 - - - - - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187629338 187629339 + Frame_Shift_Ins INS - - T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_005245.3 -1 reviewed p.R549fs 0.875:1.000 - - - - - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PIK3R1 5295 genome.wustl.edu 37 5 67591310 67591318 + Frame_Shift_Del DEL CTGAAGAGT CTGAAGAGT - novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 CTGAAGAGT CTGAAGAGT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_181523.1 +1 reviewed p.E604fs 0.999:0.340:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL BDP1 55814 genome.wustl.edu 37 5 70785355 70785355 + Silent SNP A A G novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_018429.2 +1 reviewed p.S446 0.029 121 0% 109 28.4% 2 50% - - - NULL THBS4 7060 genome.wustl.edu 37 5 79336086 79336086 + Missense_Mutation SNP T T C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_003248.4 +1 reviewed p.M92T 1.000 129 0% 106 27.4% 3 0% benign(0.133) tolerated(0.35) neutral(0.032) HMMSmart_TSPN PCDHGA2 56113 genome.wustl.edu 37 5 140719242 140719242 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_018915.2 +1 reviewed p.A235V 0.001 72 0% 73 30.1% 1 0% benign(0.003) tolerated(0.19) neutral(0.050) HMMSmart_SM00112,PatternScan_CADHERIN_1 CLVS2 134829 genome.wustl.edu 37 6 123384854 123384854 + Missense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001010852.2 +1 provisional p.R311H 1.000 412 0.2% 365 41.1% 0 - benign(0.001) tolerated(0.71) neutral(0.002) NULL TULP4 56995 genome.wustl.edu 37 6 158923539 158923539 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_020245.3 +1 validated p.V948 1.000 30 0% 52 15.4% 17 11.7% - - - NULL CAMK2B 816 genome.wustl.edu 37 7 44259705 44259705 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001220.4 -1 reviewed p.V653M 1.000 24 0% 25 32% 4 0% benign(0.398) deleterious(0) deleterious(0.573) HMMPfam_CaMKII_AD,superfamily_SSF54427 MUC12 10071 genome.wustl.edu 37 7 100634547 100634547 + Missense_Mutation SNP C C T rs186273734 by1000genomes TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000379442 +1 known p.R378C 0.001 752 0.1% 818 33.3% 0 - benign(0.247) - - NULL PRSS1 5644 genome.wustl.edu 37 7 142459878 142459878 + Missense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_002769.3 +1 reviewed p.A152T 0.975 170 0% 172 33.1% 1 0% benign(0) tolerated(0.48) neutral(0.011) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys EPPK1 83481 genome.wustl.edu 37 8 144944640 144944640 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_031308.1 -1 validated p.G928S 0.981 9 0.000 14 0.286 10 30% possibly_damaging(0.738) deleterious(0.01) deleterious(0.675) HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat FKBP15 23307 genome.wustl.edu 37 9 115959316 115959316 + Nonsense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_015258.1 -1 validated p.R254* 0.997 156 0% 128 46.9% 6 16.6% - - - HMMPfam_FKBP_C,superfamily_FKBP-like PTEN 5728 genome.wustl.edu 37 10 89692905 89692905 + Missense_Mutation SNP G G C rs121913292 TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000371953 +1 known p.R130P 1.000 405 0% 308 32.8% 19 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89720828 89720828 + Frame_Shift_Del DEL A A - novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000371953 +1 known p.A328fs 1.000 - - - - - - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 NFKB2 4791 genome.wustl.edu 37 10 104156228 104156228 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001077494.1 +1 validated p.I42 0.803 91 0% 95 30.5% 16 37.5% - - - superfamily_p53-like transcription factors,HMMPfam_RHD OR8J3 81168 genome.wustl.edu 37 11 55904466 55904466 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001004064.1 -1 provisional p.S243 0.012 334 0% 311 31.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 CLP1 10978 genome.wustl.edu 37 11 57427295 57427295 + Missense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_006831.2 +1 validated p.R116Q 1.000 160 0% 200 35% 26 26.9% probably_damaging(0.987) deleterious(0.02) deleterious(0.820) superfamily_P-loop containing nucleoside triphosphate hydrolases ENSG00000204449 0 genome.wustl.edu 37 11 89804935 89804935 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000432771 +1 known p.P278L 0.001 176 0% 113 11.5% 0 - benign(0) tolerated(1) - NULL PRB3 5544 genome.wustl.edu 37 12 11420585 11420585 + Missense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f ENST00000279573 -1 known p.R200C 0.000 384 0% 424 14.2% 0 - unknown(0) deleterious(0.05) - NULL SYT1 6857 genome.wustl.edu 37 12 79842833 79842833 + Nonsense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001135805.1 +1 validated p.R400* 1.000 147 0% 126 34.1% 0 - - - - HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) CORO1C 23603 genome.wustl.edu 37 12 109046047 109046047 + Splice_Site SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_014325.2 -1 reviewed e7+1 1.000 286 0% 271 25.5% 0 - - - - - DDX54 79039 genome.wustl.edu 37 12 113618737 113618737 + Missense_Mutation SNP T T C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001111322.1 -1 reviewed p.M101V 1.000 84 0% 68 35.3% 21 19% possibly_damaging(0.945) deleterious(0.01) deleterious(0.795) superfamily_P-loop containing nucleoside triphosphate hydrolases TM9SF2 9375 genome.wustl.edu 37 13 100193874 100193874 + Missense_Mutation SNP C C G novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_004800.1 +1 provisional p.R324G 1.000 552 0% 403 29.3% 38 5.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_EMP70 OR11G2 390439 genome.wustl.edu 37 14 20666309 20666309 + Missense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001005503.1 +1 provisional p.R272K 0.003 303 0% 359 18.1% 0 - benign(0.048) tolerated(0.17) neutral(0.062) HMMPfam_7tm_1,superfamily_SSF81321 SCFD1 23256 genome.wustl.edu 37 14 31112549 31112549 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_016106.2 +1 validated p.T184M 1.000 547 0% 595 22.7% 14 35.7% probably_damaging(0.965) tolerated(0.1) deleterious(0.694) HMMPfam_Sec1,superfamily_Sec1-like SSTR1 6751 genome.wustl.edu 37 14 38679088 38679088 + Missense_Mutation SNP C C A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001049.2 +1 reviewed p.A165E 1.000 85 0% 138 20.3% 2 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_7tm_1,superfamily_SSF81321 SYNE2 23224 genome.wustl.edu 37 14 64580228 64580228 + Missense_Mutation SNP A A G novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_182914.2 +1 reviewed p.E4260G 0.997 55 0% 67 28.4% 13 46.1% probably_damaging(0.998) - - NULL VPS13C 54832 genome.wustl.edu 37 15 62214757 62214757 + Missense_Mutation SNP T T A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_020821.1 -1 validated p.I2272L 0.020 334 0% 285 29.5% 0 - benign(0.007) tolerated(0.4) neutral(0.016) NULL ABCC6 368 genome.wustl.edu 37 16 16284063 16284063 + Silent SNP G G C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001171.5 -1 reviewed p.L531 0.999 150 0% 130 16.9% 1 100% - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ITGAL 3683 genome.wustl.edu 37 16 30492904 30492904 + Missense_Mutation SNP G G C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_002209.2 +1 reviewed p.A241P 0.454 169 0% 190 31.1% 4 0% possibly_damaging(0.451) deleterious(0.01) deleterious(0.553) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain TP53 7157 genome.wustl.edu 37 17 7578508 7578508 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_000546.4 -1 reviewed p.C141Y 1.000 127 0% 91 52.7% 99 91.9% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_p53-like transcription factors,HMMPfam_P53 EVI2A 2123 genome.wustl.edu 37 17 29645403 29645403 + Missense_Mutation SNP T T G novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001003927.2 -1 validated p.Q233P 1.000 333 0% 198 54% 4 0% possibly_damaging(0.722) deleterious(0) deleterious(0.707) HMMPfam_EVI2A ALPK2 115701 genome.wustl.edu 37 18 56202715 56202715 + Silent SNP A A T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_052947.3 -1 validated p.P1568 0.000 341 0% 215 14.4% 0 - - - - NULL SBNO2 22904 genome.wustl.edu 37 19 1119102 1119102 + Missense_Mutation SNP G G A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_014963.2 -1 validated p.R479C 0.397 17 0% 28 25% 196 36.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GPR4 2828 genome.wustl.edu 37 19 46094674 46094674 + Missense_Mutation SNP C C A novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_005282.2 -1 validated p.A151S 1.000 25 0% 54 16.7% 1 0% possibly_damaging(0.736) tolerated(0.37) neutral(0.288) HMMPfam_7tm_1,superfamily_SSF81321 PPP2R1A 5518 genome.wustl.edu 37 19 52716323 52716323 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_014225.5 +1 reviewed p.S256F 1.000 35 0% 44 36.4% 316 40.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HEAT,superfamily_ARM repeat ZNF808 388558 genome.wustl.edu 37 19 53058472 53058472 + Missense_Mutation SNP G G C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001039886.3 +1 validated p.C768S 0.987 335 0% 325 29.5% 9 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SEMG2 6407 genome.wustl.edu 37 20 43850565 43850565 + Missense_Mutation SNP C C G novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_003008.2 +1 reviewed p.Q98E 0.000 301 0% 333 32.7% 0 - benign(0.144) deleterious(0.03) neutral(0.377) HMMPfam_Semenogelin LSM14B 149986 genome.wustl.edu 37 20 60701479 60701479 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_144703.2 +1 validated p.A137 0.169 100 0% 98 30.6% 90 46.6% - - - NULL CLDN17 26285 genome.wustl.edu 37 21 31538528 31538528 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_012131.2 -1 reviewed p.P136 0.193 128 0% 107 31.8% 0 - - - - HMMPfam_PMP22_Claudin LZTR1 8216 genome.wustl.edu 37 22 21347150 21347150 + Missense_Mutation SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_006767.3 +1 reviewed p.T406M 0.999 92 0% 96 27.1% 19 31.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain CACNG2 10369 genome.wustl.edu 37 22 36962539 36962539 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_006078.2 -1 reviewed p.R99 1.000 113 0% 124 41.1% 0 - - - - HMMPfam_PMP22_Claudin FGD1 2245 genome.wustl.edu 37 X 54494263 54494263 + Missense_Mutation SNP G G T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_004463.2 -1 reviewed p.H432N 1.000 118 0% 71 57.7% 13 84.6% probably_damaging(0.998) tolerated(0.23) deleterious(0.516) HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain ARMCX3 51566 genome.wustl.edu 37 X 100880350 100880350 + Silent SNP T T C novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_016607.3 +1 reviewed p.L127 1.000 19 0% 22 36.4% 11 81.8% - - - HMMPfam_DUF634,superfamily_ARM-type_fold SLITRK2 84631 genome.wustl.edu 37 X 144904063 144904063 + Silent SNP C C T novel TCGA-D1-A169-01A-11D-A12J-09 TCGA-D1-A169-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx caddb77c-4b3b-4259-a659-7e349b4fbd3a 4626167e-3c43-400d-88c3-a06b08b6f23f NM_001144003.2 +1 reviewed p.N40 1.000 199 0% 141 55.3% 0 - - - - HMMSmart_SM00013,superfamily_L domain-like