Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ARID1A 8289 genome.wustl.edu 37 1 27106354 27106354 + Nonsense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_006015.4 +1 reviewed p.R1989* 1.000 180 0% 129 32.6% 78 34.6% - - - NULL ARID1A 8289 genome.wustl.edu 37 1 27106861 27106861 + Nonsense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_006015.4 +1 reviewed p.R2158* 1.000 64 0% 44 29.5% 62 22.5% - - - NULL GALNT5 11227 genome.wustl.edu 37 2 158157422 158157422 + Nonsense_Mutation SNP C C T rs187784514 by1000genomes TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_014568.1 +1 provisional p.R784* 1.000 238 0% 71 42.3% 0 - - - - superfamily_Nucleotide-diphospho-sugar transferases C3orf20 84077 genome.wustl.edu 37 3 14768528 14768528 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_032137.4 +1 validated p.A563T 0.865 145 0% 38 42.1% 0 - benign(0.002) deleterious(0) neutral(0.445) NULL CTNNB1 1499 genome.wustl.edu 37 3 41266101 41266101 + Missense_Mutation SNP C C T rs121913400 byCluster TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001098209.1 +1 reviewed p.S33F 1.000 106 0% 22 40.9% 209 33.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ARHGAP31 57514 genome.wustl.edu 37 3 119120905 119120905 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_020754.2 +1 reviewed p.R436W 1.000 64 0% 50 18% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PIK3CA 5290 genome.wustl.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_006218.2 +1 reviewed p.E542K 1.000 165 0% 44 29.5% 4 50% probably_damaging(0.989) deleterious(0.03) deleterious(0.804) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold MCF2L2 23101 genome.wustl.edu 37 3 183041107 183041107 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_015078.2 -1 validated p.H173 0.981 180 0% 66 28.8% 0 - - - - HMMSmart_SM00516 SLC34A2 10568 genome.wustl.edu 37 4 25678015 25678015 + Nonsense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_006424.2 +1 reviewed p.R573* 0.086 102 0% 123 43.1% 167 50.2% - - - NULL NIPBL 25836 genome.wustl.edu 37 5 37022190 37022190 + Missense_Mutation SNP G G A rs80358380 TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_133433.3 +1 reviewed p.R1789Q 1.000 351 0% 156 32.1% 15 40% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat PCDHGA3 56112 genome.wustl.edu 37 5 140723784 140723784 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_018916.3 +1 reviewed p.R62C 0.967 61 0% 82 26.8% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like ZNF879 345462 genome.wustl.edu 37 5 178459851 178459851 + Nonsense_Mutation SNP C C A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001136116.1 +1 provisional p.S301* 0.001 109 0% 58 19% 4 25% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers C6orf201 404220 genome.wustl.edu 37 6 4087904 4087904 + Missense_Mutation SNP C C T rs148130670 by1000genomes TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001085401.1 +1 validated p.P10L 0.905 176 0.6% 224 22.3% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL PCLO 27445 genome.wustl.edu 37 7 82585187 82585187 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_033026.5 -1 validated p.D1694 0.995 295 0% 53 39.6% 0 - - - - NULL PKHD1L1 93035 genome.wustl.edu 37 8 110461608 110461608 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_177531.4 +1 validated p.G2023R 1.000 187 0% 55 56.4% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains TATDN1 83940 genome.wustl.edu 37 8 125520905 125520905 + Silent SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_032026.3 -1 validated p.L138 1.000 156 0% 72 23.6% 49 28.5% possibly_damaging(0.918) deleterious(0) deleterious(0.813) HMMPfam_TatD_DNase,superfamily_Metallo-dependent hydrolases KDM4C 23081 genome.wustl.edu 37 9 7128116 7128116 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_015061.3 +1 reviewed p.T887 0.983 210 0.5% 51 35.3% 13 38.4% - - - HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT GNE 10020 genome.wustl.edu 37 9 36222849 36222849 + Missense_Mutation SNP A A C novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001128227.1 -1 reviewed p.C551G 1.000 162 0% 83 38.6% 13 53.8% benign(0.085) deleterious(0) neutral(0.451) HMMPfam_ROK,superfamily_SSF53067 OLFML2A 169611 genome.wustl.edu 37 9 127572207 127572207 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_182487.2 +1 validated p.R492Q 1.000 49 0% 60 25% 14 0% possibly_damaging(0.853) tolerated(0.09) deleterious(0.625) HMMPfam_OLF,HMMSmart_SM00284 PTEN 5728 genome.wustl.edu 37 10 89720857 89720857 + Nonsense_Mutation SNP C C G novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 ENST00000371953 +1 known p.Y336* 0.996 104 0% 30 86.7% 67 88% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 CCND1 595 genome.wustl.edu 37 11 69466021 69466021 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_053056.2 +1 reviewed p.P287S 1.000 21 0% 16 31.2% 48 43.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZBTB16 7704 genome.wustl.edu 37 11 114121229 114121229 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001018011.1 +1 reviewed p.P658 0.993 36 0% 56 28.6% 3 0% - - - NULL ANO2 57101 genome.wustl.edu 37 12 5853322 5853322 + Splice_Site SNP C C A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_020373.2 -1 validated e12+1 1.000 129 0% 39 30.8% 0 - - - - - KRT85 3891 genome.wustl.edu 37 12 52757081 52757081 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_002283.3 -1 reviewed p.D300 0.833 121 0% 171 40.9% 0 - - - - HMMPfam_Filament FLT1 2321 genome.wustl.edu 37 13 29008333 29008333 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_002019.4 -1 reviewed p.D180N 0.996 211 0% 62 41.9% 9 0% benign(0.19) deleterious(0) neutral(0.463) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin AP1G2 8906 genome.wustl.edu 37 14 24035308 24035311 + Frame_Shift_Del DEL GGGA GGGA - novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 GGGA GGGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_003917.2 -1 reviewed p.L177fs 1.000:1.000:0.999:1.000 - - - - - - - - - HMMPfam_Adaptin_N,superfamily_ARM-type_fold GDE1 51573 genome.wustl.edu 37 16 19514911 19514911 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_016641.3 -1 validated p.G293R 1.000 305 0% 72 29.2% 119 50.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl LOC100288822 100288822 genome.wustl.edu 37 17 4693384 4693384 + Missense_Mutation SNP T T C rs150754782 by1000genomes TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 XM_002343474.1 -1 model p.T122A 0.944 1 0.000 4 1.000 0 - - - - NULL KDM6B 23135 genome.wustl.edu 37 17 7750178 7750186 + In_Frame_Del DEL ACCACCACC ACCACCACC - novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 ACCACCACC ACCACCACC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001080424.1 +1 provisional p.PPP255in_frame_del 0.528:0.804:0.807:0.775:0.765:0.746:0.002:0.005:0.007 - - - - - - - - - NULL PIK3R5 23533 genome.wustl.edu 37 17 8784028 8784028 + Silent SNP C C A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001142633.1 -1 validated p.P857 0.000 173 0% 175 33.1% 2 0% - - - HMMPfam_PI3K_1B_p101 GPR179 440435 genome.wustl.edu 37 17 36485646 36485646 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001004334.2 -1 validated p.T1269M 0.665 102 0% 122 11.5% 0 - benign(0) tolerated(0.09) neutral(0.296) NULL KRT23 25984 genome.wustl.edu 37 17 39079247 39079247 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_015515.3 -1 reviewed p.H421 0.000 269 0% 49 34.7% 281 42.3% - - - NULL KRT17 3872 genome.wustl.edu 37 17 39777998 39777998 + Silent SNP G G A rs147053246 by1000genomes TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_000422.2 -1 reviewed p.N227 0.000 108 0% 158 43.7% 647 49.3% - - - superfamily_Prefoldin,HMMPfam_Filament NOG 9241 genome.wustl.edu 37 17 54671998 54671999 + In_Frame_Ins INS - - AAGAAGCTG novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_005450.4 +1 reviewed p.141in_frame_insKKL 1.000:1.000 - - - - - - - - - HMMPfam_Noggin,superfamily_SSF57501 KLC3 147700 genome.wustl.edu 37 19 45853784 45853784 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_177417.2 +1 reviewed p.T416I 0.002 112 0% 172 45.9% 8 37.5% benign(0.012) tolerated(0.09) neutral(0.297) NULL PPP5C 5536 genome.wustl.edu 37 19 46850394 46850394 + Missense_Mutation SNP C C A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_006247.2 +1 provisional p.P14H 0.995 36 0% 57 42.1% 35 45.7% benign(0.001) deleterious(0.01) neutral(0.406) NULL NLRP5 126206 genome.wustl.edu 37 19 56538394 56538394 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_153447.4 +1 reviewed p.T265 0.000 193 0% 154 36.4% 0 - - - - superfamily_SSF52540 CSRP2BP 57325 genome.wustl.edu 37 20 18125926 18125926 + Silent SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_020536.4 +1 reviewed p.R103 0.998 221 0% 119 31.9% 17 17.6% - - - NULL KRTAP19-8 728299 genome.wustl.edu 37 21 32410597 32410597 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_001099219.1 -1 provisional p.G56R 0.000 223 0% 51 35.3% 0 - unknown(0) - - NULL SIK1 150094 genome.wustl.edu 37 21 44836669 44836669 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_173354.3 -1 validated p.E769K 1.000 20 0% 22 72.7% 19 52.6% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL SMTN 6525 genome.wustl.edu 37 22 31494660 31494660 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_134270.1 +1 reviewed p.D723N 1.000 14 0% 34 41.2% 67 29.8% probably_damaging(0.998) tolerated(0.1) deleterious(0.761) NULL BAIAP2L2 80115 genome.wustl.edu 37 22 38482353 38482394 + Frame_Shift_Del DEL TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA - rs66500630 byCluster;by1000genomes TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 ENST00000402500 -1 known p.T441fs 0.064 - - - - - - - - - NULL CRELD2 79174 genome.wustl.edu 37 22 50319097 50319098 + Frame_Shift_Del DEL TG TG - novel TCGA-D1-A0ZU-01A-11D-A10M-09 TCGA-D1-A0ZU-10A-01D-A10M-09 TG TG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdca76c6-ac2f-4862-a7cf-839e6b790661 830e9e36-b66e-4799-9cbc-4d9e667cdd59 NM_024324.3 +1 validated p.V302fs 0.665:0.687 - - - - - - - - - HMMSmart_SM00179,HMMSmart_SM00181,HMMSmart_SM00261,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA