Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain WRAP73 49856 genome.wustl.edu 37 1 3551759 3551759 + Missense_Mutation SNP T T A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_017818.3 -1 reviewed p.S235C 1.000 136 0% 95 30.5% 15 46.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,HMMPfam_WD40 ARID1A 8289 genome.wustl.edu 37 1 27097764 27097765 + Frame_Shift_Ins INS - - TG novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_006015.4 +1 reviewed p.A1119fs 1.000:1.000 - - - - - - - - - HMMPfam_ARID,superfamily_ARID-like TRIM46 80128 genome.wustl.edu 37 1 155150601 155150601 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_025058.3 +1 validated p.R345C 1.000 35 0% 55 58.2% 0 - probably_damaging(0.988) deleterious(0.01) deleterious(0.843) NULL CFH 3075 genome.wustl.edu 37 1 196716320 196716320 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_000186.3 +1 reviewed p.S1191 0.000 527 0.2% 1014 22.1% 164 31% - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain PTPN14 5784 genome.wustl.edu 37 1 214549670 214549670 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005401.4 -1 reviewed p.N933 0.184 418 0% 591 24.7% 6 50% - - - HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 OBSCN 84033 genome.wustl.edu 37 1 228525712 228525712 + Missense_Mutation SNP T T A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_001098623.1 +1 reviewed p.L5623Q 1.000 75 0% 84 42.9% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL RANBP2 5903 genome.wustl.edu 37 2 109388988 109388989 + Frame_Shift_Ins INS - - T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_006267.4 +1 reviewed p.Y2688fs 0.122:0.994 - - - - - - - - - NULL TFPI 7035 genome.wustl.edu 37 2 188368465 188368465 + Missense_Mutation SNP G G T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_006287.4 -1 reviewed p.L11I 0.000 318 0% 422 38.9% 7 0% benign(0.117) deleterious(0.03) neutral(0.374) NULL COL5A2 1290 genome.wustl.edu 37 2 189899879 189899879 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_000393.3 -1 reviewed p.F1372 0.743 285 0% 316 38.6% 42 2.3% - - - HMMPfam_COLFI,HMMSmart_COLFI TNS1 7145 genome.wustl.edu 37 2 218758179 218758179 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_022648.4 -1 reviewed p.V109I 0.998 74 0% 78 39.7% 15 6.6% probably_damaging(0.986) tolerated(0.07) deleterious(0.754) superfamily_SSF52799 CTNNB1 1499 genome.wustl.edu 37 3 41266101 41266101 + Missense_Mutation SNP C C G rs121913400 byCluster TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_001098209.1 +1 reviewed p.S33C 1.000 127 0% 120 33.3% 271 36.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SETD2 29072 genome.wustl.edu 37 3 47161949 47161949 + Missense_Mutation SNP A A C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_014159.6 -1 reviewed p.L1393V 0.992 333 0% 316 38.9% 10 10% benign(0.167) deleterious(0.01) neutral(0.421) NULL PIK3R1 5295 genome.wustl.edu 37 5 67591135 67591135 + Frame_Shift_Del DEL G G - novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_181523.1 +1 reviewed p.R577fs 0.016 - - - - - - - - - NULL SNCAIP 9627 genome.wustl.edu 37 5 121759369 121759369 + Missense_Mutation SNP A A C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005460.2 +1 reviewed p.S313R 0.999 200 0% 220 40% 0 - possibly_damaging(0.878) tolerated(0.05) deleterious(0.688) superfamily_ANK PRSS16 10279 genome.wustl.edu 37 6 27216936 27216936 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005865.3 +1 reviewed p.R132K 1.000 157 0% 140 17.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_S28,superfamily_SSF53474 DGKB 1607 genome.wustl.edu 37 7 14669861 14669861 + Silent SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_004080.2 -1 reviewed p.E390 1.000 146 0% 160 19.4% 0 - - - - NULL GTF2IRD1 9569 genome.wustl.edu 37 7 73959113 73959113 + Silent SNP C C G novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_016328.1 +1 reviewed p.P549 0.010 75 0% 85 27.1% 28 46.4% - - - NULL LMTK2 22853 genome.wustl.edu 37 7 97822972 97822972 + Silent SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_014916.3 +1 reviewed p.S1065 0.000 50 0% 53 24.5% 10 30% - - - NULL ATG9B 285973 genome.wustl.edu 37 7 150721501 150721501 + Nonsense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_173681.5 -1 validated p.R4* 0.586 12 0% 10 50% 0 - - - - NULL TBC1D2 55357 genome.wustl.edu 37 9 100971188 100971188 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_018421.3 -1 validated p.L638 1.000 76 0% 69 40.6% 33 33.3% - - - HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC AKR1C4 1109 genome.wustl.edu 37 10 5242152 5242152 + Missense_Mutation SNP G G C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_001818.2 +1 reviewed p.R31S 0.004 199 0% 222 32.9% 0 - benign(0.04) tolerated(0.27) neutral(0.036) HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase PRTFDC1 56952 genome.wustl.edu 37 10 25160980 25160980 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_020200.5 -1 provisional p.M118V 1.000 144 0% 164 40.2% 7 57.1% benign(0.003) deleterious(0.03) neutral(0.364) HMMPfam_Pribosyltran,superfamily_PRTase-like PTEN 5728 genome.wustl.edu 37 10 89717753 89717753 + Nonsense_Mutation SNP A A T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc ENST00000371953 +1 known p.K260* 1.000 228 0% 279 74.9% 24 54.1% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 SERPING1 710 genome.wustl.edu 37 11 57373520 57373520 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_000062.2 +1 reviewed p.R241 0.142 221 0% 311 33.8% 372 31.4% - - - HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SLC35F2 54733 genome.wustl.edu 37 11 107663446 107663446 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_017515.4 -1 validated p.A340 0.026 103 0% 101 44.6% 4 25% possibly_damaging(0.449) deleterious(0) deleterious(0.592) HMMPfam_DUF914,superfamily_Multidrug resistance efflux transporter EmrE GIT2 9815 genome.wustl.edu 37 12 110399118 110399120 + In_Frame_Del DEL GAA GAA - novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_057169.3 -1 reviewed p.L317in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL BRAP 8315 genome.wustl.edu 37 12 112121036 112121036 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_006768.3 -1 reviewed p.P53L 1.000 304 0% 314 33.8% 12 50% benign(0.021) tolerated(0.11) neutral(0.273) NULL MAP3K9 4293 genome.wustl.edu 37 14 71199563 71199563 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_033141.2 -1 validated p.S855 0.069 146 0% 211 32.2% 6 50% - - - NULL UACA 55075 genome.wustl.edu 37 15 70960980 70960980 + Silent SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_018003.2 -1 validated p.H681 0.000 240 0% 268 43.3% 51 25.4% - - - NULL ERCC4 2072 genome.wustl.edu 37 16 14014208 14014208 + Silent SNP C C G novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005236.2 +1 reviewed p.L62 1.000 5 0.000 19 0.421 2 50% - - - NULL ZNF469 84627 genome.wustl.edu 37 16 88496101 88496101 + Missense_Mutation SNP C C A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_001127464.1 +1 reviewed p.S741R 1.000 5 0.000 4 1.000 1 0% probably_damaging(0.962) deleterious(0.02) deleterious(0.788) HMMSmart_ZnF_C2H2 SLC25A11 8402 genome.wustl.edu 37 17 4842178 4842178 + Missense_Mutation SNP C C A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_003562.4 -1 validated p.G114V 1.000 64 0% 65 36.9% 70 37.1% possibly_damaging(0.952) deleterious(0) deleterious(0.840) superfamily_Mitochondrial carrier SUZ12 23512 genome.wustl.edu 37 17 30267462 30267465 + Frame_Shift_Del DEL CTTA CTTA - novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 CTTA CTTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_015355.2 +1 reviewed p.Y117fs 1.000:1.000:1.000:1.000 - - - - - - - - - NULL MED13 9969 genome.wustl.edu 37 17 60059675 60059675 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005121.2 -1 reviewed p.N1230S 1.000 158 0% 198 39.9% 15 40% benign(0) tolerated(0.68) neutral(0.002) NULL EPG5 57724 genome.wustl.edu 37 18 43484003 43484003 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_020964.2 -1 validated p.K1470R 0.943 160 0% 177 31.1% 10 10% benign(0.07) tolerated(0.29) neutral(0.034) NULL ACAA2 10449 genome.wustl.edu 37 18 47329196 47329196 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_006111.2 -1 reviewed p.T15M 0.998 148 0% 152 32.9% 18 27.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Thiolase_N,superfamily_Thiolase-like MUC16 94025 genome.wustl.edu 37 19 8993434 8993434 + Silent SNP C C A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_024690.2 -1 validated p.L13885 0.080 267 0% 298 39.9% 19 57.8% - - - HMMPfam_SEA,superfamily_SEA domain FPR3 2359 genome.wustl.edu 37 19 52327410 52327410 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_002030.3 +1 validated p.R137C 0.961 173 0% 188 33.5% 10 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LILRA4 23547 genome.wustl.edu 37 19 54849744 54849744 + Missense_Mutation SNP G G T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_012276.3 -1 reviewed p.A93E 0.278 202 0% 220 40.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin NLRP7 199713 genome.wustl.edu 37 19 55453026 55453026 + Silent SNP G G A rs142035762 by1000genomes TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_001127255.1 -1 reviewed p.N18 0.001 105 0% 81 34.6% 0 - - - - HMMPfam_PAAD_DAPIN,superfamily_DEATH domain C20orf43 51507 genome.wustl.edu 37 20 55092171 55092171 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_016407.3 +1 validated p.G219E 0.993 130 0% 123 37.4% 86 44.1% benign(0.005) tolerated(0.82) neutral(0.001) HMMPfam_DUF602 TFF2 7032 genome.wustl.edu 37 21 43770092 43770092 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005423.4 -1 reviewed p.G43S 1.000 82 0% 65 36.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Trefoil,HMMSmart_PD,superfamily_P_trefoil,PatternScan_P_TREFOIL RASD2 23551 genome.wustl.edu 37 22 35947831 35947831 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_014310.3 +1 reviewed p.V185M 1.000 59 1.7% 53 35.8% 1 100% benign(0.422) tolerated(0.06) neutral(0.460) HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540 MSL3 10943 genome.wustl.edu 37 X 11777911 11777911 + Splice_Site SNP G G C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_078629.2 +1 reviewed e2-1 1.000 510 0% 615 35.6% 9 22.2% - - - - CXorf58 254158 genome.wustl.edu 37 X 23929944 23929944 + Nonsense_Mutation SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_152761.2 +1 validated p.R63* 0.863 379 0% 318 34.6% 0 - - - - NULL BCOR 54880 genome.wustl.edu 37 X 39921444 39921444 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_001123385.1 -1 reviewed p.N1459S 1.000 163 0% 166 37.3% 46 84.7% probably_damaging(0.985) deleterious(0) deleterious(0.877) superfamily_Ankyrin repeat CACNA1F 778 genome.wustl.edu 37 X 49082400 49082400 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005183.2 -1 reviewed p.G552E 0.994 56 0% 55 30.9% 0 - possibly_damaging(0.727) tolerated(0.06) deleterious(0.587) superfamily_Voltage-gated potassium channels BMP15 9210 genome.wustl.edu 37 X 50659598 50659598 + Silent SNP A A G novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_005448.2 +1 reviewed p.T390 0.986 110 0% 129 36.4% 0 - - - - HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501 PHF8 23133 genome.wustl.edu 37 X 53970623 53970623 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_015107.2 -1 reviewed p.R865W 0.985 71 0% 59 35.6% 18 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TAF1 6872 genome.wustl.edu 37 X 70602842 70602842 + Missense_Mutation SNP A A G novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_004606.3 +1 reviewed p.H612R 0.998 289 0% 261 36% 7 85.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CYLC1 1538 genome.wustl.edu 37 X 83128425 83128425 + Missense_Mutation SNP A A G novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_021118.1 +1 provisional p.I237V 0.000 93 0% 86 48.8% 0 - unknown(0) tolerated(0.71) - NULL ZNF449 203523 genome.wustl.edu 37 X 134494128 134494128 + Silent SNP C C T novel TCGA-D1-A0ZN-01A-11D-A122-09 TCGA-D1-A0ZN-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 52a441fb-5432-48c3-a7b0-612de8514591 50d8190c-2fa5-45e9-a40c-9872f65f13bc NM_152695.5 +1 reviewed p.I228 0.000 42 0% 38 28.9% 2 0% - - - NULL