Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ACAP3 116983 genome.wustl.edu 37 1 1239505 1239505 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000354980 -1 known p.W38* 1.000 29 0% 190 21.1% 3 66.6% - - - NULL TNFRSF14 8764 genome.wustl.edu 37 1 2489215 2489215 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003820.2 +1 reviewed p.P40 0.000 16 0% 59 20.3% 69 26% - - - NULL MMEL1 79258 genome.wustl.edu 37 1 2528098 2528098 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_033467.3 -1 reviewed p.R426C 0.998 20 0% 92 22.8% 1 100% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" NPHP4 261734 genome.wustl.edu 37 1 5927907 5927907 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015102.2 -1 reviewed p.T1122N 0.791 9 0.000 53 0.170 2 0% benign(0.001) tolerated(0.95) - NULL PTCHD2 57540 genome.wustl.edu 37 1 11562878 11562878 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020780.1 +1 validated p.R414C 1.000 23 0% 127 20.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Patched PRAMEF1 65121 genome.wustl.edu 37 1 12853534 12853534 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_023013.1 +1 provisional p.T53M 0.000 62 0% 155 20.6% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) superfamily_SSF52047 ECE1 1889 genome.wustl.edu 37 1 21599298 21599298 + Silent SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001397.2 -1 reviewed p.A129 1.000 44 0% 249 22.5% 4 50% - - - "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" ALPL 249 genome.wustl.edu 37 1 21890570 21890570 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000478.4 +1 reviewed p.N170S 1.000 22 0% 67 13.4% 8 37.5% benign(0.146) tolerated(0.08) neutral(0.312) HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core IQCC 55721 genome.wustl.edu 37 1 32673225 32673225 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018134.2 +1 validated p.L315 0.107 16 0% 33 27.3% 1 100% - - - NULL HEYL 26508 genome.wustl.edu 37 1 40092733 40092733 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014571.3 -1 reviewed p.V145I 0.465 18 0% 38 18.4% 1 0% benign(0.078) tolerated(0.36) neutral(0.026) HMMPfam_Hairy_orange,HMMSmart_ORANGE IPO13 9670 genome.wustl.edu 37 1 44423121 44423121 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014652.3 +1 reviewed p.I480 0.315 38 0% 93 24.7% 7 28.5% - - - superfamily_ARM-type_fold TXNDC12 51060 genome.wustl.edu 37 1 52520711 52520711 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015913.2 -1 provisional p.L20I 0.927 36 0% 64 31.2% 23 39.1% benign(0.002) tolerated(0.4) neutral(0.016) NULL SCP2 6342 genome.wustl.edu 37 1 53420455 53420455 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002979.3 +1 reviewed p.S125 0.265 533 0% 284 22.9% 2 0% - - - HMMPfam_Thiolase_N,superfamily_Thiolase-like PODN 127435 genome.wustl.edu 37 1 53547786 53547787 + In_Frame_Ins INS - - AGG novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153703.3 +1 validated p.651in_frame_insE 0.044:0.051 - - - - - - - - - superfamily_SSF52047 LOC100288209 100288209 genome.wustl.edu 37 1 55317896 55317896 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a XM_002342084.1 +1 model p.A42 0.000 16 0% 96 19.8% 9 77.7% - - - NULL PCSK9 255738 genome.wustl.edu 37 1 55505552 55505553 + In_Frame_Ins INS - - CTG novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_174936.2 +1 reviewed p.18in_frame_insL 0.042:0.086 - - - - - - - - - NULL FGGY 55277 genome.wustl.edu 37 1 60073504 60073504 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001113411.1 +1 validated p.G311 0.002 98 0% 219 27.4% 3 0% - - - superfamily_SSF53067 MCOLN3 55283 genome.wustl.edu 37 1 85487847 85487847 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018298.9 -1 validated p.L409P 0.990 73 0% 62 24.2% 2 50% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) HMMPfam_Ion_trans TGFBR3 7049 genome.wustl.edu 37 1 92177833 92177833 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003243.3 -1 validated p.T711 0.997 41 0% 56 12.5% 0 - - - - HMMPfam_Zona_pellucida,HMMSmart_ZP PPM1J 333926 genome.wustl.edu 37 1 113255523 113255523 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005167.5 -1 reviewed p.P191L 0.993 34 0% 160 28.1% 0 - benign(0.031) tolerated(0.07) neutral(0.321) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C WDR3 10885 genome.wustl.edu 37 1 118476076 118476076 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006784.2 +1 reviewed p.E45G 1.000 63 0% 181 19.9% 1 100% probably_damaging(0.991) deleterious(0) deleterious(0.889) superfamily_WD40 repeat-like WARS2 10352 genome.wustl.edu 37 1 119575637 119575637 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015836.3 -1 reviewed p.D327G 0.997 59 0% 144 20.1% 15 53.3% benign(0.123) deleterious(0.01) neutral(0.416) superfamily_Nucleotidylyl transferase PDZK1 5174 genome.wustl.edu 37 1 145761247 145761247 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002614.3 +1 provisional p.A354T 0.002 227 0% 49 10.2% 2 0% possibly_damaging(0.948) tolerated(0.39) neutral(0.407) NULL BOLA1 51027 genome.wustl.edu 37 1 149871866 149871866 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_016074.3 +1 validated p.R85Q 1.000 9 0.000 24 0.208 58 48.2% possibly_damaging(0.899) deleterious(0.04) deleterious(0.705) HMMPfam_BolA,superfamily_BolA-like HRNR 388697 genome.wustl.edu 37 1 152192752 152192752 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001009931.1 -1 validated p.S451 0.000 45 0% 188 19.1% 0 - - - - NULL INTS3 65123 genome.wustl.edu 37 1 153744347 153744347 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_023015.3 +1 validated p.L876 1.000 17 0% 55 20% 68 27.9% - - - NULL RUSC1 23623 genome.wustl.edu 37 1 155295665 155295665 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001105203.1 +1 validated p.L609 1.000 82 0% 378 12.2% 9 22.2% - - - HMMPfam_RUN,HMMSmart_SM00593 GON4L 54856 genome.wustl.edu 37 1 155721809 155721809 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001037533.1 -1 validated p.V2138M 0.974 43 0% 163 19% 22 31.8% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_Homeodomain-like CCT3 7203 genome.wustl.edu 37 1 156279018 156279018 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005998.3 -1 reviewed p.G537V 0.182 37 0% 106 27.4% 966 44.8% benign(0) deleterious(0.04) neutral(0.349) NULL CD5L 922 genome.wustl.edu 37 1 157804460 157804463 + Frame_Shift_Del DEL TCCA TCCA - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 TCCA TCCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005894.2 -1 validated p.V151fs 1.000:1.000:1.000:1.000 - - - - - - - - - HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like KIRREL 55243 genome.wustl.edu 37 1 158064790 158064790 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018240.5 +1 validated p.R718 1.000 11 0% 59 22% 2 0% - - - NULL NHLH1 4807 genome.wustl.edu 37 1 160340717 160340717 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005598.3 +1 validated p.R66C 1.000 11 0% 26 26.9% 1 0% unknown(0) deleterious(0) - superfamily_HLH helix-loop-helix DNA-binding domain APOA2 336 genome.wustl.edu 37 1 161192205 161192205 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001643.1 -1 reviewed p.A98D 0.001 51 2% 110 11.8% 0 - possibly_damaging(0.64) deleterious(0) deleterious(0.668) HMMPfam_ApoA-II SELE 6401 genome.wustl.edu 37 1 169695871 169695871 + Frame_Shift_Del DEL A A - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000450.2 -1 reviewed p.L575fs 0.996 - - - - - - - - - NULL TNR 7143 genome.wustl.edu 37 1 175365861 175365861 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000422274 -1 known p.G78R 0.573 17 0% 51 17.6% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CACNA1S 779 genome.wustl.edu 37 1 201038598 201038598 + Splice_Site SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000069.2 -1 reviewed e18+2 1.000 34 0% 87 20.7% 0 - - - - - SLC45A3 85414 genome.wustl.edu 37 1 205632218 205632253 + In_Frame_Del DEL GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC - rs72434280 byCluster;by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_033102.2 -1 validated p.LGPTEPAEGLSA223in_frame_del 0.000:0.025:0.000:0.007:0.001:0.014:0.046:0.062:0.078:0.967:0.989:0.986:0.991:0.960:0.000:0.000:0.002:0.000:0.974:0.965:0.960:0.949:0.805:0.001:0.007:0.000:0.000:0.364:0.280:0.272:0.996:1.000:0.999:0.957:0.896:0.000 - - - - - - - - - superfamily_MFS general substrate transporter IARS2 55699 genome.wustl.edu 37 1 220316370 220316370 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018060.3 +1 validated p.A882V 0.997 152 0% 273 20.5% 58 48.2% benign(0.007) tolerated(0.67) neutral(0.003) superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1 CAPN8 388743 genome.wustl.edu 37 1 223716473 223716473 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001143962.1 -1 validated p.A597 1.000 67 0% 83 21.7% 2 50% - - - superfamily_EF-hand CDC42BPA 8476 genome.wustl.edu 37 1 227307583 227307583 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003607.3 -1 reviewed p.L523 0.979 655 0% 128 21.1% 0 - - - - NULL OBSCN 84033 genome.wustl.edu 37 1 228466442 228466442 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001098623.1 +1 reviewed p.K2304 1.000 15 0% 56 17.9% 0 - - - - HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin PGBD5 79605 genome.wustl.edu 37 1 230459240 230459240 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024554.3 -1 reviewed p.S532 1.000 59 0% 161 24.2% 1 0% - - - NULL TPO 7173 genome.wustl.edu 37 2 1491700 1491700 + Missense_Mutation SNP A A C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000547.5 +1 reviewed p.N569H 0.000 15 0% 84 15.5% 0 - probably_damaging(0.99) tolerated(1) neutral(0.442) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases KRTCAP3 200634 genome.wustl.edu 37 2 27666007 27666009 + In_Frame_Del DEL CTT CTT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_173853.3 +1 validated p.L115in_frame_del 1.000:1.000:0.987 - - - - - - - - - NULL DHX57 90957 genome.wustl.edu 37 2 39088525 39088525 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_198963.1 -1 provisional p.L343F 1.000 196 0% 50 28% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_RWD THADA 63892 genome.wustl.edu 37 2 43712461 43712461 + Missense_Mutation SNP G G C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001083953.1 -1 validated p.R1250G 1.000 244 0% 83 22.9% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PAPOLG 64895 genome.wustl.edu 37 2 61014131 61014131 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_022894.2 +1 reviewed p.R406W 1.000 565 0% 222 18% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PAP_RNA-bind,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain KANSL3 55683 genome.wustl.edu 37 2 97297103 97297103 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001115016.1 -1 validated p.R111M 1.000 22 0% 73 19.2% 1 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL C2orf55 343990 genome.wustl.edu 37 2 99448962 99448962 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_207362.2 -1 validated p.C130F 1.000 15 0% 89 20.2% 1 0% benign(0.032) tolerated(0.05) neutral(0.347) NULL MAP4K4 9448 genome.wustl.edu 37 2 102472563 102472563 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_145686.2 +1 reviewed p.R453Q 1.000 176 0% 233 17.2% 11 27.2% unknown(0) tolerated(0.47) - NULL STEAP3 55240 genome.wustl.edu 37 2 120005522 120005522 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_182915.2 +1 validated p.V264M 0.967 8 0.000 46 0.217 1 100% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) NULL PROC 5624 genome.wustl.edu 37 2 128183782 128183782 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000312.3 +1 reviewed p.R219 0.000 41 0% 95 20% 7 57.1% - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys POTEE 445582 genome.wustl.edu 37 2 131984493 131984493 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001083538.1 +1 validated p.R303I 0.001 747 0% 234 14.1% 0 - possibly_damaging(0.681) deleterious(0) deleterious(0.688) HMMPfam_Ank,superfamily_Ankyrin repeat NCKAP5 344148 genome.wustl.edu 37 2 133542212 133542212 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_207363.2 -1 validated p.A724 0.575 43 0% 83 16.9% 0 - - - - NULL RAB3GAP1 22930 genome.wustl.edu 37 2 135920420 135920423 + Frame_Shift_Del DEL AAGT AAGT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 AAGT AAGT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_012233.2 +1 reviewed p.E830fs 1.000:1.000 - - - - - - - - - NULL SPOPL 339745 genome.wustl.edu 37 2 139322400 139322400 + Missense_Mutation SNP A A C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001001664.2 +1 validated p.Q320H 1.000 149 0% 183 26.2% 0 - benign(0.004) tolerated(0.13) neutral(0.253) NULL TTC21B 79809 genome.wustl.edu 37 2 166758318 166758318 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024753.3 -1 validated p.A891T 1.000 59 0% 70 18.6% 2 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like LRP2 4036 genome.wustl.edu 37 2 170103917 170103917 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004525.2 -1 reviewed p.L960S 1.000 86 0% 216 17.6% 0 - benign(0.122) deleterious(0) neutral(0.455) superfamily_SSF63825 SSB 6741 genome.wustl.edu 37 2 170662024 170662024 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003142.3 +1 provisional p.L36P 1.000 232 0% 190 22.1% 61 40.9% probably_damaging(1) deleterious(0) deleterious(0.945) "HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain" KCTD18 130535 genome.wustl.edu 37 2 201371645 201371645 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152387.2 -1 validated p.R32H 1.000 30 0% 89 12.4% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_K_tetra,superfamily_POZ domain CASP8 841 genome.wustl.edu 37 2 202137500 202137500 + Splice_Site SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001080125.1 +1 reviewed e4+1 1.000 199 0% 93 15.1% 2 50% - - - - CPS1 1373 genome.wustl.edu 37 2 211464172 211464172 + Missense_Mutation SNP C C T rs187860166 by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001122633.1 +1 reviewed p.A485V 1.000 70 0% 22 22.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain ABCA12 26154 genome.wustl.edu 37 2 215848478 215848478 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_173076.2 -1 reviewed p.Q1425 0.999 138 0% 133 21.1% 0 - - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases USP37 57695 genome.wustl.edu 37 2 219394710 219394710 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020935.2 -1 validated p.E278K 1.000 157 0% 176 27.8% 2 0% benign(0.005) tolerated(0.16) neutral(0.059) NULL SLC23A3 151295 genome.wustl.edu 37 2 220033006 220033006 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001144890.1 -1 validated p.L245M 1.000 27 0% 66 30.3% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Xan_ur_permease ANKZF1 55139 genome.wustl.edu 37 2 220099777 220099777 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001042410.1 +1 validated p.P478 0.008 26 0% 97 19.6% 38 39.4% - - - NULL CCDC140 151278 genome.wustl.edu 37 2 223168656 223168656 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153038.1 +1 validated p.A12V 0.000 38 0% 90 37.8% 0 - unknown(0) - - NULL SPHKAP 80309 genome.wustl.edu 37 2 228884564 228884564 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001142644.1 -1 validated p.Q336* 0.025 125 0% 184 15.2% 0 - - - - NULL HDAC4 9759 genome.wustl.edu 37 2 240011757 240011757 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006037.3 -1 reviewed p.A774V 1.000 29 0% 67 23.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase KIF1A 547 genome.wustl.edu 37 2 241697827 241697827 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004321.4 -1 reviewed p.T835 0.092 27 0% 70 20% 0 - - - - NULL ITPR1 3708 genome.wustl.edu 37 3 4722338 4722338 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001099952.2 +1 reviewed p.S1014 0.166 182 0% 106 19.8% 0 - - - - NULL CIDEC 63924 genome.wustl.edu 37 3 9911696 9911696 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_022094.2 -1 provisional p.R142C 0.707 40 0% 149 21.5% 0 - benign(0.003) tolerated(0.16) neutral(0.059) NULL IL17RC 84818 genome.wustl.edu 37 3 9975018 9975018 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153461.2 +1 reviewed p.D706G 0.916 8 0.000 38 0.263 45 35.5% benign(0.418) deleterious(0.02) deleterious(0.518) HMMPfam_SEFIR CRELD1 78987 genome.wustl.edu 37 3 9979791 9979791 + Splice_Site SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001031717.3 +1 reviewed e4+1 0.998 7 0.000 66 0.197 0 - - - - - ANKRD28 23243 genome.wustl.edu 37 3 15807800 15807800 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015199.2 -1 provisional p.P44L 1.000 90 0% 105 19% 2 100% probably_damaging(0.96) tolerated(0.18) neutral(0.459) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat SATB1 6304 genome.wustl.edu 37 3 18391137 18391137 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001131010.1 -1 validated p.Q606R 0.993 27 0% 48 25% 6 0% benign(0.001) tolerated(0.57) neutral(0.006) NULL TOP2B 7155 genome.wustl.edu 37 3 25685238 25685238 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001068.2 -1 reviewed p.C88Y 1.000 188 0% 104 10.6% 9 33.3% benign(0.001) tolerated(1) - superfamily_ATP_bd_ATPase SLC22A13 9390 genome.wustl.edu 37 3 38317840 38317840 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004256.3 +1 reviewed p.T434A 0.809 32 0% 157 21.7% 0 - benign(0.33) tolerated(0.14) neutral(0.353) HMMPfam_MFS_1,superfamily_MFS general substrate transporter ZBTB47 92999 genome.wustl.edu 37 3 42705776 42705776 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_145166.3 +1 validated p.R268W 1.000 16 0% 38 21.1% 4 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MAP4 4134 genome.wustl.edu 37 3 47963294 47963294 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002375.4 -1 reviewed p.I164V 0.006 88 0% 114 21.1% 4 50% unknown(0) tolerated(0.25) - NULL CCDC51 79714 genome.wustl.edu 37 3 48475118 48475118 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024661.3 -1 validated p.Q159R 1.000 9 0.000 78 0.244 8 50% probably_damaging(0.971) tolerated(0.14) deleterious(0.662) NULL ADAMTS9 56999 genome.wustl.edu 37 3 64633620 64633620 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_182920.1 -1 reviewed p.G569V 1.000 43 0% 70 10% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL LRIG1 26018 genome.wustl.edu 37 3 66434449 66434449 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015541.2 -1 validated p.G679 0.999 23 0% 62 22.6% 10 20% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin GCET2 257144 genome.wustl.edu 37 3 111846902 111846902 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152785.3 -1 reviewed p.W35C 0.786 115 0% 68 14.7% 0 - benign(0) tolerated(0.18) neutral(0.056) NULL BOC 91653 genome.wustl.edu 37 3 112989770 112989770 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_033254.2 +1 validated p.S216G 0.973 34 0% 94 22.3% 2 0% benign(0) tolerated(0.56) neutral(0.006) HMMSmart_SM00409,HMMPfam_V-set PARP15 165631 genome.wustl.edu 37 3 122340369 122340369 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001113523.1 +1 validated p.G381E 0.000 128 0% 104 19.2% 6 0% possibly_damaging(0.561) tolerated(0.67) neutral(0.194) HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like IL12A 3592 genome.wustl.edu 37 3 159711370 159711370 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000882.2 +1 reviewed p.A146T 0.038 215 0% 211 20.4% 1 0% benign(0.002) deleterious(0.04) neutral(0.349) HMMPfam_IL12,superfamily_4_helix_cytokine DVL3 1857 genome.wustl.edu 37 3 183888139 183888139 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004423.3 +1 reviewed p.S583G 1.000 13 0% 22 27.3% 41 41.4% unknown(0) tolerated(0.6) - NULL CLCN2 1181 genome.wustl.edu 37 3 184072070 184072070 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004366.4 -1 reviewed p.T514A 1.000 12 0% 43 23.3% 4 50% probably_damaging(0.986) tolerated(0.05) deleterious(0.780) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel EHHADH 1962 genome.wustl.edu 37 3 184966189 184966189 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000440662 -1 known p.L64P 0.003 246 0% 252 20.6% 0 - benign(0.083) - - NULL TPRG1 285386 genome.wustl.edu 37 3 189028213 189028213 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_198485.3 +1 validated p.P173L 0.000 83 0% 17 29.4% 2 50% benign(0) tolerated(0.33) neutral(0.024) NULL ENSG00000163959 0 genome.wustl.edu 37 3 195954469 195954469 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000428985 +1 known p.P87 0.000 34 0% 188 25.5% 0 - unknown(0) - - NULL KIAA1530 57654 genome.wustl.edu 37 4 1377698 1377698 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020894.2 +1 validated p.R669H 1.000 17 0% 70 28.6% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FGFR3 2261 genome.wustl.edu 37 4 1806634 1806634 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000142.4 +1 reviewed p.T450 0.942 34 0% 34 23.5% 4 25% - - - NULL SH3BP2 6452 genome.wustl.edu 37 4 2831395 2831395 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001122681.1 +1 reviewed p.S254 0.001 9 0.000 45 0.244 30 10% - - - NULL ADD1 118 genome.wustl.edu 37 4 2896374 2896374 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014189.2 +1 reviewed p.A219 0.752 55 0% 94 16% 6 50% - - - HMMPfam_Aldolase_II,superfamily_Aldolase_II_N CCDC96 257236 genome.wustl.edu 37 4 7043112 7043112 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153376.2 -1 validated p.T518 0.000 29 0% 90 18.9% 49 42.8% - - - NULL PPARGC1A 10891 genome.wustl.edu 37 4 23830042 23830042 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_013261.3 -1 reviewed p.S246 0.207 215 0% 496 20.4% 0 - - - - NULL KLF3 51274 genome.wustl.edu 37 4 38696452 38696452 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_016531.5 +1 validated p.R261G 1.000 51 0% 85 23.5% 13 53.8% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers LRRC66 339977 genome.wustl.edu 37 4 52861498 52861498 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001024611.1 -1 provisional p.A564T 0.000 41 0% 38 28.9% 0 - benign(0) tolerated(1) - NULL SPATA18 132671 genome.wustl.edu 37 4 52951107 52951107 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_145263.2 +1 provisional p.R502H 0.988 96 0% 76 21.1% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL NOA1 84273 genome.wustl.edu 37 4 57829706 57829706 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032313.2 -1 provisional p.Q669 0.266 48 0% 70 18.6% 43 55.8% - - - NULL UGT2A2 574537 genome.wustl.edu 37 4 70504751 70504751 + Missense_Mutation SNP G G A rs185641136 by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001105677.1 -1 inferred p.P195L 0.998 52 1.9% 64 28.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase FAM190A 401145 genome.wustl.edu 37 4 92520068 92520068 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001145065.1 +1 validated p.Q855* 0.978 55 0% 35 11.4% 0 - - - - NULL ANXA5 308 genome.wustl.edu 37 4 122604611 122604611 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001154.3 -1 reviewed p.S71P 1.000 267 0% 129 30.2% 125 22.4% probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335 TBC1D9 23158 genome.wustl.edu 37 4 141598053 141598053 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015130.2 -1 validated p.R352C 1.000 72 0% 55 14.5% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GRAM,HMMSmart_SM00568 NR3C2 4306 genome.wustl.edu 37 4 149356987 149356987 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000901.4 -1 reviewed p.S342 0.997 61 0% 90 15.6% 0 - - - - NULL DDX60 55601 genome.wustl.edu 37 4 169229244 169229244 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017631.5 -1 validated p.G59 0.770 152 0% 41 14.6% 1 100% - - - NULL SDHA 6389 genome.wustl.edu 37 5 225597 225597 + Missense_Mutation SNP A A C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004168.2 +1 reviewed p.T126P 1.000 43 0% 124 22.6% 32 40.6% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain SDHA 6389 genome.wustl.edu 37 5 228364 228364 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004168.2 +1 reviewed p.G229E 1.000 43 0% 181 14.4% 76 38.1% benign(0.354) deleterious(0.03) deleterious(0.476) HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain SLC12A7 10723 genome.wustl.edu 37 5 1064248 1064248 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006598.2 -1 validated p.H853Y 1.000 7 0.000 40 0.225 14 28.5% probably_damaging(0.973) deleterious(0) deleterious(0.859) NULL SLC6A19 340024 genome.wustl.edu 37 5 1208929 1208929 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001003841.2 +1 reviewed p.A91T 1.000 7 0.000 44 0.205 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF PDZD2 23037 genome.wustl.edu 37 5 32059363 32059363 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_178140.2 +1 reviewed p.G740D 1.000 26 0% 73 31.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP C1QTNF3 114899 genome.wustl.edu 37 5 34043168 34043168 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_181435.4 -1 validated p.L21 1.000 79 0% 50 10% 0 - - - - NULL DNAJC21 134218 genome.wustl.edu 37 5 34954033 34954033 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_194283.3 +1 validated p.V499A 0.998 403 0% 166 18.7% 56 41% benign(0) tolerated(0.86) neutral(0.001) NULL HEATR7B2 133558 genome.wustl.edu 37 5 41058239 41058239 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_173489.4 -1 validated p.G228* 0.364 58 0% 72 18.1% 0 - - - - superfamily_ARM repeat MRPS30 10884 genome.wustl.edu 37 5 44811143 44811143 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_016640.3 +1 reviewed p.R212C 0.986 98 0% 153 19% 17 35.2% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_PDCD9 MAST4 375449 genome.wustl.edu 37 5 66448520 66448520 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000443808 +1 known p.G174R 0.141 33 0% 98 23.5% 0 - - - - NULL PIK3R1 5295 genome.wustl.edu 37 5 67589585 67589599 + In_Frame_Del DEL CATGAATATAACACT CATGAATATAACACT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 CATGAATATAACACT CATGAATATAACACT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_181523.1 +1 reviewed p.HEYNT450in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL NSA2 10412 genome.wustl.edu 37 5 74065096 74065096 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014886.3 +1 provisional p.Q83H 0.996 118 0% 113 28.3% 142 39.4% benign(0.051) deleterious(0.01) neutral(0.409) HMMPfam_Ribosomal_S8e F2R 2149 genome.wustl.edu 37 5 76028342 76028342 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001992.3 +1 reviewed p.S98G 1.000 118 0% 126 29.4% 2 0% benign(0.002) tolerated(0.79) neutral(0.001) superfamily_SSF81321 SLC27A6 28965 genome.wustl.edu 37 5 128320959 128320959 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001017372.1 +1 reviewed p.V205 0.335 110 0% 68 26.5% 0 - - - - HMMPfam_AMP-binding,superfamily_SSF56801 ACSL6 23305 genome.wustl.edu 37 5 131290057 131290057 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001009185.1 -1 validated p.A680V 1.000 107 0.9% 148 20.9% 0 - possibly_damaging(0.501) tolerated(0.11) neutral(0.439) superfamily_SSF56801 DNAJC18 202052 genome.wustl.edu 37 5 138761891 138761891 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152686.2 -1 provisional p.N177D 1.000 80 0% 121 14.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_DnaJ_N ANKHD1-EIF4EBP3 404734 genome.wustl.edu 37 5 139892987 139892987 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020690.4 +1 reviewed p.V1414M 1.000 115 0% 64 23.4% 20 30% possibly_damaging(0.449) deleterious(0.03) deleterious(0.511) NULL PCDHA12 56137 genome.wustl.edu 37 5 140256546 140256546 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018903.2 +1 reviewed p.R497W 1.000 22 0% 80 23.7% 1 100% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB4 8641 genome.wustl.edu 37 5 140768587 140768587 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003736.2 +1 reviewed p.E379G 0.739 55 0% 138 20.3% 0 - possibly_damaging(0.813) tolerated(0.07) deleterious(0.626) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CSNK1A1 1452 genome.wustl.edu 37 5 148899903 148899903 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001025105.1 -1 validated p.D136Y 1.000 437 0% 95 16.8% 15 20% probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase GM2A 2760 genome.wustl.edu 37 5 150646961 150646961 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000405.4 +1 reviewed p.S177 0.000 28 0% 81 24.7% 25 16% - - - HMMSmart_ML,superfamily_SSF63707 HMP19 51617 genome.wustl.edu 37 5 173531229 173531229 + Splice_Site SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015980.3 +1 provisional e3-2 1.000 43 0% 278 19.8% 0 - - - - - UNC5A 90249 genome.wustl.edu 37 5 176305244 176305244 + Splice_Site SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_133369.2 +1 validated e12-1 1.000 8 0.000 39 0.179 1 100% - - - - NSD1 64324 genome.wustl.edu 37 5 176696722 176696722 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_022455.4 +1 reviewed p.H1808R 1.000 86 1.2% 189 18% 1 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT ZNF187 7741 genome.wustl.edu 37 6 28244310 28244310 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152736.4 +1 validated p.Q158* 0.954 71 0% 156 17.3% 4 25% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers MICA 100507436 genome.wustl.edu 37 6 31380196 31380196 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000376219 +1 known p.V329A 0.000 61 0% 342 21.1% 31 25.8% - - - NULL IP6K3 117283 genome.wustl.edu 37 6 33703175 33703175 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001142883.1 -1 reviewed p.G27W 1.000 5 0.000 45 0.400 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SAICAR synthase-like MDGA1 266727 genome.wustl.edu 37 6 37626169 37626169 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153487.3 -1 validated p.S78 0.993 10 0% 60 16.7% 1 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin UBR2 23304 genome.wustl.edu 37 6 42643898 42643898 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015255.2 +1 reviewed p.H1452 1.000 57 0% 188 23.4% 20 45% - - - NULL PTK7 5754 genome.wustl.edu 37 6 43126671 43126671 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000489707 +1 known p.C241Y 1.000 21 0% 86 24.4% 59 33.8% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) TDRD6 221400 genome.wustl.edu 37 6 46657584 46657584 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001010870.2 +1 validated p.G573 0.951 37 0% 86 26.7% 0 - - - - HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748 TFAP2D 83741 genome.wustl.edu 37 6 50683083 50683083 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_172238.3 +1 validated p.S98 0.999 83 0% 297 19.9% 0 - - - - NULL FAM83B 222584 genome.wustl.edu 37 6 54735158 54735158 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001010872.1 +1 validated p.H38 0.233 64 0% 34 17.6% 0 - - - - HMMPfam_DUF1669 GFRAL 389400 genome.wustl.edu 37 6 55198608 55198608 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_207410.2 +1 validated p.R61K 0.003 146 0% 61 13.1% 0 - benign(0) tolerated(1) - NULL KCNQ5 56479 genome.wustl.edu 37 6 73751742 73751742 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_019842.3 +1 reviewed p.W191C 1.000 149 0% 306 19.3% 0 - probably_damaging(0.999) tolerated(0.12) deleterious(0.751) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels MYO6 4646 genome.wustl.edu 37 6 76570788 76570788 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004999.3 +1 reviewed p.Y508H 1.000 536 0% 180 17.2% 3 100% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases ME1 4199 genome.wustl.edu 37 6 83938553 83938553 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002395.4 -1 reviewed p.A375V 0.339 429 0% 223 11.7% 1 0% benign(0.001) tolerated(0.82) neutral(0.001) HMMPfam_Malic_M,superfamily_NAD(P)-bd TSPYL4 23270 genome.wustl.edu 37 6 116574038 116574038 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021648.4 -1 validated p.W378* 1.000 78 0% 178 19.1% 1 100% - - - HMMPfam_NAP RFX6 222546 genome.wustl.edu 37 6 117250061 117250061 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_173560.2 +1 validated p.D846 0.830 44 0% 48 22.9% 0 - - - - NULL RSPO3 84870 genome.wustl.edu 37 6 127471696 127471696 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032784.3 +1 reviewed p.T139A 0.655 115 0% 26 15.4% 2 0% possibly_damaging(0.902) deleterious(0.04) deleterious(0.706) superfamily_Growth factor receptor domain UTRN 7402 genome.wustl.edu 37 6 144809927 144809927 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007124.2 +1 reviewed p.L1364P 0.995 49 0% 60 18.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FBXO30 84085 genome.wustl.edu 37 6 146126379 146126379 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032145.4 -1 reviewed p.S388L 0.983 108 0% 35 11.4% 2 0% benign(0.224) tolerated(0.3) neutral(0.051) NULL ESR1 2099 genome.wustl.edu 37 6 152163850 152163850 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000125.3 +1 reviewed p.Y191H 1.000 49 0% 37 16.2% 1 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) SYNE1 23345 genome.wustl.edu 37 6 152497539 152497539 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_182961.2 -1 reviewed p.I7873V 1.000 124 0% 149 15.4% 1 0% benign(0.003) tolerated(0.26) neutral(0.034) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat CCR6 1235 genome.wustl.edu 37 6 167550645 167550645 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004367.5 +1 reviewed p.C309 1.000 72 0% 184 13.6% 1 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 HEATR2 54919 genome.wustl.edu 37 7 796418 796418 + Splice_Site SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017802.3 +1 validated e6-1 1.000 6 0.000 34 0.294 0 - - - - - INTS1 26173 genome.wustl.edu 37 7 1538143 1538143 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001080453.2 -1 validated p.L444 1.000 16 0% 99 18.2% 0 - - - - NULL USP42 84132 genome.wustl.edu 37 7 6175546 6175546 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032172.2 +1 validated p.V173I 1.000 175 0% 215 15.8% 2 0% possibly_damaging(0.951) tolerated(0.17) neutral(0.453) HMMPfam_UCH,superfamily_SSF54001 USP42 84132 genome.wustl.edu 37 7 6187412 6187412 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032172.2 +1 validated p.T425 0.968 42 0% 115 22.6% 1 0% - - - NULL KBTBD2 25948 genome.wustl.edu 37 7 32919168 32919168 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015483.2 -1 validated p.L17 1.000 85 0% 55 12.7% 3 66.6% - - - superfamily_POZ domain PKD1L1 168507 genome.wustl.edu 37 7 47876561 47876561 + Nonsense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_138295.2 -1 reviewed p.Y1967* 0.003 32 0% 70 24.3% 0 - - - - NULL FIGNL1 63979 genome.wustl.edu 37 7 50514909 50514909 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001042762.1 -1 validated p.C26Y 0.996 55 0% 79 13.9% 0 - possibly_damaging(0.902) tolerated(0.44) neutral(0.369) NULL ABCB1 5243 genome.wustl.edu 37 7 87183163 87183163 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000927.3 -1 reviewed p.L305 0.928 609 0% 268 23.1% 0 - - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCB1 5243 genome.wustl.edu 37 7 87199540 87199540 + Splice_Site SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000927.3 -1 reviewed e4-1 0.136 148 0% 112 15.2% 0 - - - - - CCDC132 55610 genome.wustl.edu 37 7 92985390 92985390 + Frame_Shift_Del DEL A A - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017667.2 +1 validated p.R925fs 1.000 - - - - - - - - - HMMPfam_DUF2451 TRRAP 8295 genome.wustl.edu 37 7 98574160 98574160 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003496.2 +1 validated p.R2647W 1.000 16 0% 86 22.1% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat PTCD1 26024 genome.wustl.edu 37 7 99027252 99027252 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015545.2 -1 validated p.A258T 1.000 28 0% 143 21.7% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PPR CYP3A5 1577 genome.wustl.edu 37 7 99261605 99261605 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000777.2 -1 reviewed p.N262D 0.016 539 0.2% 245 16.3% 0 - benign(0) tolerated(0.42) neutral(0.014) HMMPfam_p450,superfamily_Cytochrome P450 TAF6 6878 genome.wustl.edu 37 7 99709861 99709861 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005641.2 -1 reviewed p.A197V 0.923 7 0.000 62 0.339 13 30.7% benign(0.01) tolerated(0.2) neutral(0.050) NULL LRRC4 64101 genome.wustl.edu 37 7 127669406 127669406 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_022143.4 -1 validated p.A430T 1.000 24 0% 122 17.2% 2 0% probably_damaging(0.973) deleterious(0.01) deleterious(0.821) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin FLNC 2318 genome.wustl.edu 37 7 128485112 128485112 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001458.4 +1 reviewed p.V1198A 0.997 14 0% 41 19.5% 0 - benign(0) tolerated(0.84) neutral(0.001) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin NOBOX 135935 genome.wustl.edu 37 7 144098355 144098355 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001080413.2 -1 provisional p.N210D 0.000 53 0% 130 24.6% 0 - benign(0.006) tolerated(0.08) neutral(0.300) NULL MLL3 58508 genome.wustl.edu 37 7 151878863 151878863 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_170606.2 -1 reviewed p.R2028* 1.000 50 0% 52 26.9% 2 0% - - - NULL LOXL2 4017 genome.wustl.edu 37 8 23179745 23179746 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002318.2 -1 reviewed p.S401fs 1.000:1.000 - - - - - - - - - HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor HMBOX1 79618 genome.wustl.edu 37 8 28906561 28906561 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001135726.1 +1 validated p.E374G 1.000 32 0% 51 17.6% 1 0% possibly_damaging(0.679) tolerated(0.06) deleterious(0.565) NULL IKBKB 3551 genome.wustl.edu 37 8 42179636 42179636 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001556.1 +1 validated p.F601 0.909 55 0% 201 28.4% 19 21% - - - NULL PRKDC 5591 genome.wustl.edu 37 8 48696320 48696320 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000314191 -1 known p.A3719T 0.807 64 0% 155 18.1% 16 43.7% benign(0) tolerated(0.51) neutral(0.009) superfamily_Protein kinase-like (PK-like) PXDNL 137902 genome.wustl.edu 37 8 52320862 52320862 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_144651.4 -1 validated p.A1108T 0.037 44 0% 85 15.3% 1 0% possibly_damaging(0.592) deleterious(0.01) deleterious(0.610) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases C8orf34 116328 genome.wustl.edu 37 8 69445316 69445316 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_052958.1 +1 predicted p.I235T 0.854 117 0% 104 16.3% 3 33.3% benign(0.004) tolerated(0.17) neutral(0.059) NULL POP1 10940 genome.wustl.edu 37 8 99146256 99146256 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015029.2 +1 reviewed p.I272T 0.130 324 0% 155 23.2% 0 - benign(0.001) tolerated(0.86) neutral(0.001) NULL KCNV1 27012 genome.wustl.edu 37 8 110984534 110984534 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014379.2 -1 reviewed p.R315M 1.000 35 0% 82 18.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels EXT1 2131 genome.wustl.edu 37 8 118825189 118825189 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000127.2 -1 reviewed p.S548 1.000 36 0% 130 21.5% 8 12.5% - - - HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases FER1L6 654463 genome.wustl.edu 37 8 124989701 124989701 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001039112.2 +1 validated p.H305 0.573 32 0% 45 13.3% 0 - - - - HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) EFR3A 23167 genome.wustl.edu 37 8 133023138 133023138 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015137.3 +1 validated p.Y821C 1.000 82 0% 116 17.2% 10 20% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL DENND3 22898 genome.wustl.edu 37 8 142185423 142185424 + Frame_Shift_Del DEL GT GT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 GT GT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014957.2 +1 validated p.C723fs 1.000:1.000 - - - - - - - - - NULL UHRF2 115426 genome.wustl.edu 37 9 6420949 6420949 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152896.1 +1 reviewed p.G64E 1.000 112 0% 118 26.3% 2 0% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like IFNA7 3444 genome.wustl.edu 37 9 21201628 21201628 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021057.2 -1 validated p.T179 0.000 283 0% 96 18.8% 0 - - - - HMMPfam_Interferon,superfamily_4-helical cytokines KLHL9 55958 genome.wustl.edu 37 9 21333273 21333273 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018847.2 -1 validated p.A529V 1.000 185 0% 232 21.1% 11 36.3% benign(0.133) deleterious(0.02) neutral(0.394) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain PLAA 9373 genome.wustl.edu 37 9 26923308 26923308 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001031689.2 -1 validated p.R303* 1.000 168 0% 141 19.9% 4 0% - - - NULL FAM214B 80256 genome.wustl.edu 37 9 35106545 35106545 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_025182.2 -1 predicted p.G350D 1.000 44 0% 60 15% 5 0% probably_damaging(0.993) deleterious(0.01) deleterious(0.856) NULL SIT1 27240 genome.wustl.edu 37 9 35650040 35650040 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014450.2 -1 validated p.L132 1.000 13 0% 60 23.3% 41 0% - - - NULL TRPM6 140803 genome.wustl.edu 37 9 77416901 77416901 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017662.4 -1 reviewed p.A641V 1.000 64 1.6% 56 25% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SPIN1 10927 genome.wustl.edu 37 9 91083522 91083522 + Splice_Site SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006717.2 +1 validated e4+2 1.000 80 0% 110 17.3% 0 - - - - - C9orf129 445577 genome.wustl.edu 37 9 96097840 96097840 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001098808.1 -1 provisional p.L61M 0.526 27 0% 167 24.6% 8 0% probably_damaging(0.998) tolerated(0.06) deleterious(0.797) NULL PHF2 5253 genome.wustl.edu 37 9 96416753 96416753 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005392.3 +1 reviewed p.R283H 1.000 13 0% 79 19% 3 0% probably_damaging(0.971) tolerated(0.29) neutral(0.442) HMMSmart_JmjC,HMMPfam_JmjC,superfamily_SSF51197 PHF2 5253 genome.wustl.edu 37 9 96428007 96428007 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005392.3 +1 reviewed p.F659 0.995 19 0% 95 16.8% 3 33.3% - - - NULL C9orf174 100499483 genome.wustl.edu 37 9 100139120 100139120 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020893.1 +1 predicted p.R1629C 0.655 43 0% 79 17.7% 28 28.5% probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL COL27A1 85301 genome.wustl.edu 37 9 117026683 117026683 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032888.2 +1 validated p.L1082M 0.985 8 0.000 35 0.171 6 50% unknown(0) tolerated(0.14) - HMMPfam_Collagen PAPPA 5069 genome.wustl.edu 37 9 118950361 118950361 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002581.3 +1 reviewed p.F448 0.998 22 0% 44 15.9% 0 - - - - HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486 PAPPA 5069 genome.wustl.edu 37 9 119116066 119116066 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002581.3 +1 reviewed p.A1447 0.480 49 0% 107 19.6% 0 - - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486 TRIM32 22954 genome.wustl.edu 37 9 119460226 119460226 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001099679.1 +1 reviewed p.R69C 1.000 21 0% 88 15.9% 1 0% possibly_damaging(0.812) deleterious(0) deleterious(0.750) superfamily_SSF57850 ZBTB6 10773 genome.wustl.edu 37 9 125674231 125674231 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006626.4 -1 provisional p.D41N 1.000 75 0% 135 19.3% 0 - possibly_damaging(0.921) tolerated(0.42) neutral(0.385) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB NEK6 10783 genome.wustl.edu 37 9 127113223 127113223 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001145001.2 +1 reviewed p.T347 1.000 11 0% 47 17% 95 26.3% - - - NULL FAM129B 64855 genome.wustl.edu 37 9 130271314 130271314 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_022833.2 -1 validated p.R420* 1.000 13 0% 37 21.6% 24 29.1% - - - NULL USP20 10868 genome.wustl.edu 37 9 132631681 132631681 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001008563.3 +1 validated p.V457M 1.000 10 0% 43 20.9% 12 41.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_UCH,superfamily_SSF54001 ASS1 445 genome.wustl.edu 37 9 133355784 133355784 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000050.4 +1 reviewed p.G262 0.268 7 0.000 72 0.236 166 25.9% - - - HMMPfam_Arginosuc_synth,superfamily_Argininosuccinate synthetase C-terminal domain C9orf96 169436 genome.wustl.edu 37 9 136256564 136256564 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153710.3 +1 validated p.A192V 0.003 39 0% 113 12.4% 0 - benign(0.113) tolerated(0.35) neutral(0.029) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) BRD3 8019 genome.wustl.edu 37 9 136913391 136913391 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007371.3 -1 reviewed p.Q300 1.000 6 0.000 61 0.148 7 28.5% - - - superfamily_Bromodomain TRAF2 7186 genome.wustl.edu 37 9 139804380 139804380 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021138.3 +1 reviewed p.H179 0.971 34 0% 136 22.1% 11 36.3% - - - HMMPfam_zf-TRAF FAM166A 401565 genome.wustl.edu 37 9 140139591 140139591 + Missense_Mutation SNP C C T rs137862856 by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001001710.1 -1 predicted p.R201Q 1.000 9 0.000 25 0.280 0 - benign(0.067) tolerated(0.12) neutral(0.265) NULL ZFAND4 93550 genome.wustl.edu 37 10 46135310 46135310 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001128324.1 -1 validated p.M224T 1.000 186 0% 167 20.4% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL JMJD1C 221037 genome.wustl.edu 37 10 64974658 64974658 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032776.1 -1 validated p.G423 0.995 465 0% 235 25.5% 0 - - - - NULL SEC24C 9632 genome.wustl.edu 37 10 75526556 75526556 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004922.2 +1 reviewed p.R613M 1.000 106 0% 163 17.2% 9 22.2% probably_damaging(0.956) deleterious(0) deleterious(0.844) HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24 PPIF 10105 genome.wustl.edu 37 10 81113543 81113543 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005729.3 +1 reviewed p.K190R 0.995 49 0% 108 23.1% 58 36.2% benign(0.002) tolerated(0.63) neutral(0.004) HMMPfam_Pro_isomerase,superfamily_CSA_PPIase PTEN 5728 genome.wustl.edu 37 10 89692902 89692902 + Missense_Mutation SNP G G T rs121909218 TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000371953 +1 known p.G129V 1.000 148 0% 72 29.2% 11 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II BLNK 29760 genome.wustl.edu 37 10 97964350 97964350 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_013314.3 -1 reviewed p.R280 0.982 55 0% 71 21.1% 23 30.4% - - - NULL SLIT1 6585 genome.wustl.edu 37 10 98803209 98803209 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003061.2 -1 validated p.V639I 1.000 51 0% 369 21.1% 0 - possibly_damaging(0.851) tolerated(0.12) deleterious(0.588) HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like NFKB2 4791 genome.wustl.edu 37 10 104162098 104162098 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001077494.1 +1 validated p.L890F 1.000 10 0% 30 26.7% 157 35.6% probably_damaging(0.959) deleterious(0) deleterious(0.847) NULL NT5C2 22978 genome.wustl.edu 37 10 104849581 104849581 + Missense_Mutation SNP C C G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001134373.1 -1 validated p.V512L 0.984 58 0% 139 20.9% 32 46.8% benign(0.001) tolerated(0.32) neutral(0.024) NULL INA 9118 genome.wustl.edu 37 10 105037867 105037867 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032727.3 +1 reviewed p.R300H 1.000 9 0.000 27 0.259 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMPfam_Filament SH3PXD2A 9644 genome.wustl.edu 37 10 105363274 105363274 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000420222 -1 known p.R494G 0.015 68 0% 76 18.4% 3 33.3% - - - NULL WDR96 80217 genome.wustl.edu 37 10 105965739 105965739 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_025145.5 -1 provisional p.G315 0.127 138 0% 67 16.4% 2 100% - - - superfamily_WD40 repeat-like SORCS3 22986 genome.wustl.edu 37 10 106937874 106937874 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014978.1 +1 reviewed p.V651A 0.613 128 0.8% 81 19.8% 0 - benign(0.002) tolerated(0.7) neutral(0.002) HMMSmart_VPS10,superfamily_SSF110296 SORCS3 22986 genome.wustl.edu 37 10 107007086 107007087 + Frame_Shift_Ins INS - - A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014978.1 +1 reviewed p.V1035fs 0.997:1.000 - - - - - - - - - NULL MXI1 4601 genome.wustl.edu 37 10 112044688 112044688 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_130439.3 +1 reviewed p.S277 1.000 42 0% 68 17.6% 2 100% - - - NULL ADRA2A 150 genome.wustl.edu 37 10 112838176 112838176 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000681.3 +1 reviewed p.A141V 1.000 15 0% 63 22.2% 0 - probably_damaging(0.983) deleterious(0.01) deleterious(0.835) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like EIF3A 8661 genome.wustl.edu 37 10 120801732 120801732 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003750.2 -1 validated p.R1100 0.971 56 0% 206 18.9% 56 26.7% - - - NULL C10orf120 399814 genome.wustl.edu 37 10 124457811 124457811 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001010912.1 -1 predicted p.A149V 0.003 56 0% 218 21.6% 0 - benign(0) tolerated(1) - NULL DCHS1 8642 genome.wustl.edu 37 11 6649960 6649960 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003737.2 -1 reviewed p.H1755N 0.018 22 0% 108 17.6% 0 - benign(0.19) tolerated(0.39) neutral(0.034) superfamily_Cadherin RIC3 79608 genome.wustl.edu 37 11 8132448 8132448 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024557.3 -1 validated p.C302R 0.188 62 0% 117 12.8% 1 0% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL EIF3M 10480 genome.wustl.edu 37 11 32622234 32622234 + Splice_Site SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006360.3 +1 provisional e9-1 1.000 195 0% 99 14.1% 0 - - - - - OR5D13 390142 genome.wustl.edu 37 11 55541605 55541605 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001001967.1 +1 provisional p.R231Q 0.000 132 0% 61 18% 0 - benign(0.011) tolerated(0.24) neutral(0.038) HMMPfam_7tm_1,superfamily_SSF81321 TNKS1BP1 85456 genome.wustl.edu 37 11 57077118 57077119 + Frame_Shift_Del DEL CT CT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_033396.2 -1 validated p.G1023fs 0.000:0.000 - - - - - - - - - NULL SMTNL1 219537 genome.wustl.edu 37 11 57310258 57310258 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001105565.1 +1 provisional p.T66I 0.000 36 0% 101 14.9% 3 0% benign(0) tolerated(0.4) neutral(0.016) NULL SLC22A8 9376 genome.wustl.edu 37 11 62763614 62763614 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004254.3 -1 reviewed p.E258* 0.994 17 0% 36 25% 0 - - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter TCIRG1 10312 genome.wustl.edu 37 11 67809238 67809238 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006019.2 +1 reviewed p.A46T 0.943 26 0% 115 16.5% 26 34.6% benign(0.047) deleterious(0.02) neutral(0.386) HMMPfam_V_ATPase_I PPP6R3 55291 genome.wustl.edu 37 11 68318641 68318641 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018312.4 +1 validated p.S202L 1.000 249 0% 132 18.2% 0 - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) HMMPfam_SAPS CCND1 595 genome.wustl.edu 37 11 69465988 69465990 + In_Frame_Del DEL GAG GAG - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 GAG GAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_053056.2 +1 reviewed p.E279in_frame_del 0.006:0.008:0.008 - - - - - - - - - HMMPfam_Cyclin_C ALG8 79053 genome.wustl.edu 37 11 77825036 77825036 + Splice_Site SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024079.4 -1 reviewed e7-1 1.000 143 0% 84 17.9% 0 - - - - - MSANTD4 84437 genome.wustl.edu 37 11 105881368 105881368 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032424.1 -1 validated p.G93S 0.912 126 0% 162 19.1% 3 33.3% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL OR10S1 219873 genome.wustl.edu 37 11 123847671 123847671 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001004474.1 -1 provisional p.R243H 0.000 14 0% 35 17.1% 0 - benign(0.005) tolerated(0.52) neutral(0.009) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like FAM118B 79607 genome.wustl.edu 37 11 126120402 126120402 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024556.3 +1 validated p.R114H 1.000 131 0% 137 21.2% 6 50% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) NULL IQSEC3 440073 genome.wustl.edu 37 12 266194 266194 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015232.1 +1 validated p.C416 0.992 9 0.000 51 0.176 0 - - - - HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7 B4GALNT3 283358 genome.wustl.edu 37 12 668561 668561 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_173593.3 +1 validated p.G954 0.465 31 0% 150 21.3% 16 18.7% - - - superfamily_Nucleotide-diphospho-sugar transferases PDZRN4 29951 genome.wustl.edu 37 12 41967524 41967524 + Silent SNP C C G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_013377.3 +1 validated p.G723 1.000 28 0% 22 22.7% 0 - - - - NULL MLL2 8085 genome.wustl.edu 37 12 49420289 49420289 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003482.3 -1 validated p.R5154W 0.975 16 0% 66 19.7% 10 40% unknown(0) - - NULL MLL2 8085 genome.wustl.edu 37 12 49431543 49431543 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003482.3 -1 validated p.S3199N 1.000 15 0% 90 25.6% 1 0% unknown(0) - - NULL FAIM2 23017 genome.wustl.edu 37 12 50284472 50284472 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_012306.2 -1 validated p.T173 0.999 44 0% 167 26.3% 3 0% - - - HMMPfam_UPF0005 SOAT2 8435 genome.wustl.edu 37 12 53512167 53512167 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003578.3 +1 reviewed p.Y271C 1.000 112 0% 414 18.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MBOAT AMHR2 269 genome.wustl.edu 37 12 53819354 53819354 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020547.2 +1 reviewed p.S206 0.985 17 0% 76 26.3% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase NEUROD4 58158 genome.wustl.edu 37 12 55420986 55420986 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021191.2 +1 validated p.P255S 1.000 41 0% 76 22.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL OR6C70 390327 genome.wustl.edu 37 12 55863138 55863138 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001005499.1 -1 provisional p.A262V 0.388 91 0% 41 19.5% 0 - probably_damaging(1) tolerated(0.11) deleterious(0.772) HMMPfam_7tm_1,superfamily_SSF81321 TMEM194A 23306 genome.wustl.edu 37 12 57457038 57457038 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001130963.1 -1 validated p.W282R 1.000 90 0% 112 22.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF2215 C12orf56 115749 genome.wustl.edu 37 12 64678468 64678468 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001099676.2 -1 validated p.R269H 0.538 106 0% 142 17.6% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MYF6 4618 genome.wustl.edu 37 12 81101689 81101689 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002469.2 +1 reviewed p.A64V 1.000 22 0% 42 26.2% 0 - probably_damaging(0.991) deleterious(0.02) deleterious(0.827) HMMPfam_Basic,HMMSmart_SM00520 CRADD 8738 genome.wustl.edu 37 12 94243886 94243886 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003805.3 +1 reviewed p.R147C 1.000 16 0% 73 19.2% 3 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Death,HMMSmart_SM00005,PatternScan_IG_MHC,superfamily_DEATH domain NUAK1 9891 genome.wustl.edu 37 12 106461183 106461183 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014840.2 -1 validated p.T461 0.009 30 0% 177 24.3% 1 0% - - - NULL RASAL1 8437 genome.wustl.edu 37 12 113537813 113537813 + Missense_Mutation SNP A A C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004658.1 -1 reviewed p.L779R 0.983 16 0% 57 19.3% 22 36.3% probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL TPCN1 53373 genome.wustl.edu 37 12 113724870 113724870 + Silent SNP C C T rs142475172 by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001143819.1 +1 validated p.I607 0.929 27 0% 120 23.3% 4 50% - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SRRM4 84530 genome.wustl.edu 37 12 119591401 119591401 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_194286.2 +1 validated p.S446 1.000 29 0% 82 15.9% 0 - - - - NULL CIT 11113 genome.wustl.edu 37 12 120260757 120260757 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007174.1 -1 validated p.D326 1.000 75 0% 95 13.7% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ORAI1 84876 genome.wustl.edu 37 12 122079093 122079093 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032790.3 +1 reviewed p.A150 0.000 11 0% 59 13.6% 41 9.7% - - - HMMPfam_DUF1650 DHX37 57647 genome.wustl.edu 37 12 125438645 125438645 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032656.2 -1 reviewed p.M856V 1.000 12 0% 58 20.7% 6 33.3% probably_damaging(0.954) deleterious(0.02) deleterious(0.780) HMMPfam_HA2 TMEM132D 121256 genome.wustl.edu 37 12 130184589 130184589 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_133448.2 -1 validated p.R245K 0.639 21 0% 67 31.3% 0 - benign(0.006) tolerated(1) - NULL RIMBP2 23504 genome.wustl.edu 37 12 130921539 130921539 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015347.4 -1 validated p.H635Y 0.857 15 0% 73 15.1% 0 - possibly_damaging(0.625) deleterious(0.03) deleterious(0.583) NULL SACS 26278 genome.wustl.edu 37 13 23929960 23929960 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014363.4 -1 reviewed p.G264D 1.000 130 0% 178 16.9% 1 0% possibly_damaging(0.837) deleterious(0.02) deleterious(0.703) superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase USP12 219333 genome.wustl.edu 37 13 27649506 27649506 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_182488.2 -1 provisional p.P252S 1.000 129 0% 74 29.7% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UCH,superfamily_SSF54001 FREM2 341640 genome.wustl.edu 37 13 39262526 39262527 + Frame_Shift_Del DEL GA GA - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_207361.4 +1 reviewed p.E349fs 1.000:1.000 - - - - - - - - - NULL DGKH 160851 genome.wustl.edu 37 13 42734209 42734209 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_178009.2 +1 reviewed p.C264 0.795 29 0% 68 26.5% 1 100% - - - HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain LRCH1 23143 genome.wustl.edu 37 13 47315819 47315819 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015116.2 +1 reviewed p.R675C 1.000 49 0% 198 20.2% 0 - possibly_damaging(0.817) deleterious(0.04) deleterious(0.658) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain OR11G2 390439 genome.wustl.edu 37 14 20666024 20666024 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001005503.1 +1 provisional p.R177H 0.000 75 0% 176 14.8% 0 - benign(0.001) tolerated(0.16) neutral(0.059) HMMPfam_7tm_1,superfamily_SSF81321 METTL17 64745 genome.wustl.edu 37 14 21458431 21458431 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001029991.1 +1 validated p.K40E 0.067 16 0% 67 22.4% 14 21.4% possibly_damaging(0.615) tolerated(0.31) neutral(0.240) NULL HEATR5A 25938 genome.wustl.edu 37 14 31795407 31795407 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015473.2 -1 validated p.W877* 1.000 58 0% 41 19.5% 0 - - - - superfamily_ARM repeat SRP54 6729 genome.wustl.edu 37 14 35483087 35483087 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003136.3 +1 validated p.P289T 1.000 395 0% 182 9.9% 19 10.5% possibly_damaging(0.435) tolerated(0.08) neutral(0.442) HMMPfam_SRP54,superfamily_P-loop containing nucleoside triphosphate hydrolases SOS2 6655 genome.wustl.edu 37 14 50585247 50585247 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006939.2 -1 validated p.R1272C 1.000 43 0% 155 21.3% 16 12.5% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) NULL FRMD6 122786 genome.wustl.edu 37 14 52182118 52182118 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001042481.1 +1 validated p.R301C 1.000 44 0% 73 23.3% 0 - benign(0.007) deleterious(0) neutral(0.445) HMMPfam_FERM_C,superfamily_SSF50729 ENTPD5 957 genome.wustl.edu 37 14 74443083 74443083 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001249.2 -1 reviewed p.G196W 1.000 30 0% 45 24.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GDA1_CD39 EML5 161436 genome.wustl.edu 37 14 89082509 89082511 + In_Frame_Del DEL AAC AAC - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 AAC AAC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_183387.2 -1 validated p.V1958in_frame_del 0.523:0.578:0.126 - - - - - - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 DIO3 1735 genome.wustl.edu 37 14 102028146 102028146 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001362.3 +1 reviewed p.D79N 1.000 9 0.000 33 0.273 0 - possibly_damaging(0.643) tolerated(0.17) neutral(0.284) HMMPfam_T4_deiodinase RYR3 6263 genome.wustl.edu 37 15 34072482 34072482 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001036.3 +1 validated p.T3070A 0.335 56 0% 121 18.2% 0 - benign(0) - - NULL GPR176 11245 genome.wustl.edu 37 15 40093790 40093790 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007223.1 -1 provisional p.R364H 1.000 41 2.4% 91 25.3% 0 - benign(0.264) deleterious(0.01) neutral(0.433) NULL TYRO3 7301 genome.wustl.edu 37 15 41870246 41870246 + Silent SNP G G A rs61553785 byCluster;byFrequency;by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006293.3 +1 reviewed p.A815 0.022 16 0% 35 17.1% 6 50% - - - superfamily_Kinase_like MGA 23269 genome.wustl.edu 37 15 42053939 42053939 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001080541.2 +1 validated p.A2516 0.717 86 0% 70 18.6% 1 100% - - - HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain JMJD7-PLA2G4B 8681 genome.wustl.edu 37 15 42133286 42133286 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005090.3 +1 validated p.Q360* 0.944 74 0% 308 17.2% 5 20% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) SPTBN5 51332 genome.wustl.edu 37 15 42148639 42148639 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_016642.2 -1 validated p.A2954V 0.000 11 0% 24 41.7% 1 0% benign(0.035) tolerated(0.21) neutral(0.046) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN5 51332 genome.wustl.edu 37 15 42166127 42166127 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_016642.2 -1 validated p.Q1567H 0.857 11 0% 106 13.2% 1 0% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat MAP1A 4130 genome.wustl.edu 37 15 43815149 43815149 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002373.5 +1 reviewed p.R493H 0.964 56 0% 42 26.2% 2 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL DUOX1 53905 genome.wustl.edu 37 15 45454505 45454505 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017434.3 +1 reviewed p.T1393I 1.000 25 0% 214 24.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain SECISBP2L 9728 genome.wustl.edu 37 15 49329895 49329895 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014701.2 -1 provisional p.P32 0.939 85 0% 105 11.4% 0 - - - - NULL CGNL1 84952 genome.wustl.edu 37 15 57731432 57731432 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032866.3 +1 validated p.G412D 1.000 15 0% 24 25% 0 - possibly_damaging(0.765) deleterious(0) deleterious(0.728) NULL UACA 55075 genome.wustl.edu 37 15 70952536 70952536 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_018003.2 -1 validated p.Q1378R 1.000 119 0% 106 22.6% 301 42.8% possibly_damaging(0.779) tolerated(0.5) neutral(0.301) NULL RLBP1 6017 genome.wustl.edu 37 15 89753549 89753549 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000326.4 -1 reviewed p.G307 0.175 22 0% 116 25% 0 - - - - HMMPfam_CRAL_TRIO TARSL2 123283 genome.wustl.edu 37 15 102263311 102263311 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152334.2 -1 validated p.S118 0.000 129 0% 238 15.5% 1 0% - - - NULL STUB1 10273 genome.wustl.edu 37 16 732452 732452 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005861.2 +1 validated p.A292V 1.000 30 0% 85 25.9% 220 39% benign(0.242) tolerated(0.09) neutral(0.321) HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box IGFALS 3483 genome.wustl.edu 37 16 1841692 1841692 + Missense_Mutation SNP G G C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004970.2 -1 reviewed p.R243G 0.613 9 0.000 59 0.254 0 - possibly_damaging(0.717) tolerated(0.07) deleterious(0.579) HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058 ECI1 1632 genome.wustl.edu 37 16 2294550 2294550 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001919.3 -1 reviewed p.R100C 0.000 13 0% 24 33.3% 193 48.1% benign(0) tolerated(0.2) neutral(0.049) HMMPfam_ECH,superfamily_ClpP/crotonase KREMEN2 79412 genome.wustl.edu 37 16 3016720 3016720 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_172229.1 +1 reviewed p.A188 0.993 7 0.000 21 0.190 0 - - - - HMMPfam_WSC,HMMSmart_SM00321 THOC6 79228 genome.wustl.edu 37 16 3077019 3077019 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024339.3 +1 validated p.S215L 0.989 60 0% 310 23.9% 119 39.4% benign(0.032) deleterious(0.02) neutral(0.385) superfamily_WD40 repeat-like CREBBP 1387 genome.wustl.edu 37 16 3777959 3777959 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004380.2 -1 reviewed p.P2363 0.541 82 0% 97 28.9% 36 38.8% - - - NULL PPL 5493 genome.wustl.edu 37 16 4941909 4941909 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002705.4 -1 reviewed p.S624I 0.999 10 0% 73 13.7% 3 0% benign(0.097) tolerated(0.05) neutral(0.353) superfamily_Spectrin repeat ZP2 7783 genome.wustl.edu 37 16 21214546 21214546 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003460.1 -1 reviewed p.Q333 1.000 99 0% 52 25% 0 - - - - NULL TNRC6A 27327 genome.wustl.edu 37 16 24831626 24831626 + Missense_Mutation SNP T T A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014494.2 +1 reviewed p.N1749K 0.997 66 0% 100 28% 8 25% possibly_damaging(0.692) tolerated(0.36) neutral(0.268) NULL TBC1D10B 26000 genome.wustl.edu 37 16 30376910 30376911 + Frame_Shift_Del DEL CT CT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015527.3 -1 validated p.S321fs 1.000:1.000 - - - - - - - - - NULL SRCAP 10847 genome.wustl.edu 37 16 30723663 30723663 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006662.2 +1 validated p.M632I 1.000 13 0% 50 24% 1 0% unknown(0) - - HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases PYDC1 260434 genome.wustl.edu 37 16 31228177 31228177 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_152901.2 -1 provisional p.A58V 0.000 5 0.000 43 0.209 0 - benign(0.271) deleterious(0.05) neutral(0.374) HMMPfam_PAAD_DAPIN,superfamily_DEATH domain ARMC5 79798 genome.wustl.edu 37 16 31476145 31476145 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001105247.1 +1 validated p.A601T 0.322 12 0% 16 31.2% 5 20% benign(0.002) tolerated(1) - superfamily_ARM repeat SLC5A2 6524 genome.wustl.edu 37 16 31496217 31496218 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003041.3 +1 reviewed p.L92fs 0.999:0.999 - - - - - - - - - HMMPfam_SSF GPT2 84706 genome.wustl.edu 37 16 46934634 46934634 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_133443.2 +1 validated p.P125H 1.000 30 0% 85 27.1% 7 28.5% benign(0.341) deleterious(0.01) deleterious(0.513) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases SIAH1 6477 genome.wustl.edu 37 16 48395622 48395622 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001006610.1 -1 reviewed p.P271S 1.000 77 0% 163 22.7% 25 52% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Traf_like,HMMPfam_Sina GOT2 2806 genome.wustl.edu 37 16 58756158 58756158 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002080.2 -1 reviewed p.N91D 0.913 28 0% 100 20% 17 41.1% benign(0.039) tolerated(0.28) neutral(0.034) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases ACD 65057 genome.wustl.edu 37 16 67692203 67692203 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001082486.1 -1 reviewed p.P384S 0.930 38 0% 65 16.9% 59 18.6% probably_damaging(0.98) tolerated(0.56) neutral(0.430) NULL PHLPP2 23035 genome.wustl.edu 37 16 71692612 71692612 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015020.2 -1 validated p.A698T 1.000 185 0% 420 19.8% 0 - probably_damaging(0.994) tolerated(0.09) deleterious(0.748) HMMSmart_SM00364,superfamily_L domain-like ZFHX3 463 genome.wustl.edu 37 16 72992196 72992197 + In_Frame_Ins INS - - GAA novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006885.3 -1 reviewed p.616in_frame_insF 0.203:0.195 - - - - - - - - - NULL ABR 29 genome.wustl.edu 37 17 973327 973327 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021962.2 -1 reviewed p.R300* 1.000 8 0.000 48 0.229 9 11.1% - - - superfamily_PH domain-like SHBG 6462 genome.wustl.edu 37 17 7533563 7533563 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001040.3 +1 reviewed p.R25C 0.001 18 0% 130 16.9% 1 0% possibly_damaging(0.772) deleterious(0.02) deleterious(0.670) superfamily_Concanavalin A-like lectins/glucanases MYH13 8735 genome.wustl.edu 37 17 10216011 10216011 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003802.2 -1 validated p.C1415 0.993 36 0% 141 17% 0 - - - - HMMPfam_Myosin_tail_1 MYOCD 93649 genome.wustl.edu 37 17 12639597 12639597 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_153604.2 +1 reviewed p.P179T 0.983 39 0% 88 15.9% 0 - benign(0) tolerated(0.24) neutral(0.037) NULL NCOR1 9611 genome.wustl.edu 37 17 15974945 15974945 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006311.2 -1 reviewed p.D1310 1.000 314 0% 221 20.8% 3 0% - - - NULL SHMT1 6470 genome.wustl.edu 37 17 18232140 18232140 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004169.3 -1 reviewed p.A459V 0.000 17 0% 76 15.8% 19 52.6% benign(0.001) tolerated(0.36) neutral(0.020) superfamily_PLP-dependent transferases MFAP4 4239 genome.wustl.edu 37 17 19290390 19290390 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000395592 -1 known p.E14D 0.001 4 0.000 41 0.293 0 - unknown(0) - - NULL TMEM97 27346 genome.wustl.edu 37 17 26652550 26652550 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014573.2 +1 validated p.Y50H 1.000 102 0% 200 20% 8 62.5% possibly_damaging(0.651) tolerated(0.49) neutral(0.240) NULL SLC13A2 9058 genome.wustl.edu 37 17 26818479 26818479 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003984.3 +1 validated p.T200M 0.000 12 0% 23 21.7% 0 - possibly_damaging(0.66) tolerated(0.1) deleterious(0.519) HMMPfam_Na_sulph_symp EFCAB5 374786 genome.wustl.edu 37 17 28419882 28419882 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_198529.3 +1 validated p.N1417D 0.000 417 0% 167 26.9% 0 - benign(0.254) tolerated(0.29) neutral(0.055) NULL C17orf98 388381 genome.wustl.edu 37 17 36997510 36997510 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001080465.2 -1 validated p.A45T 0.975 14 0% 48 25% 1 100% possibly_damaging(0.852) deleterious(0.03) deleterious(0.692) NULL KCNH4 23415 genome.wustl.edu 37 17 40318419 40318419 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_012285.2 -1 reviewed p.P579L 1.000 13 0% 66 21.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding DHX8 1659 genome.wustl.edu 37 17 41598242 41598242 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004941.1 +1 reviewed p.P1021S 1.000 29 0% 74 18.9% 17 35.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HA2,superfamily_SSF52540 G6PC3 92579 genome.wustl.edu 37 17 42152401 42152401 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_138387.3 +1 reviewed p.R161* 0.996 42 0% 264 21.6% 51 0% - - - HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase ARHGAP27 201176 genome.wustl.edu 37 17 43481429 43481429 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_199282.2 -1 validated p.R164C 0.997 19 0% 161 19.3% 8 12.5% possibly_damaging(0.939) deleterious(0.04) deleterious(0.734) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like CDC27 996 genome.wustl.edu 37 17 45249385 45249385 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001114091.1 -1 reviewed p.R50H 1.000 72 0% 72 16.7% 2 0% probably_damaging(0.986) tolerated(0.1) deleterious(0.721) superfamily_TPR-like KPNB1 3837 genome.wustl.edu 37 17 45750862 45750862 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000290158 +1 known p.I568V 1.000 281 0% 223 20.6% 56 30.3% benign(0) tolerated(0.26) neutral(0.034) superfamily_ARM repeat COX11 1353 genome.wustl.edu 37 17 53045825 53045825 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004375.3 -1 reviewed p.L61 0.000 11 0% 26 23.1% 18 38.8% - - - NULL USP36 57602 genome.wustl.edu 37 17 76795040 76795040 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_025090.3 -1 validated p.R1064W 0.723 49 0% 200 16.5% 20 30% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ENGASE 64772 genome.wustl.edu 37 17 77076406 77076406 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001042573.1 +1 validated p.R228H 0.431 19 0% 71 18.3% 1 100% benign(0.013) tolerated(0.16) neutral(0.060) HMMPfam_Glyco_hydro_85 AZI1 22994 genome.wustl.edu 37 17 79172773 79172773 + Splice_Site SNP T T G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014984.2 -1 validated e10-2 0.782 19 0% 60 28.3% 2 100% - - - - FASN 2194 genome.wustl.edu 37 17 80037091 80037091 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004104.4 -1 reviewed p.S2488 0.708 16 0% 60 28.3% 195 47.1% - - - HMMPfam_Thioesterase,superfamily_alpha/beta-Hydrolases CETN1 1068 genome.wustl.edu 37 18 580801 580801 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004066.1 +1 reviewed p.N131 0.005 28 0% 96 19.8% 2 50% - - - HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand GREB1L 80000 genome.wustl.edu 37 18 18981249 18981249 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001142966.1 +1 provisional p.Q224R 1.000 103 0% 81 21% 0 - unknown(0) deleterious(0.03) - NULL CCDC11 220136 genome.wustl.edu 37 18 47777909 47777909 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_145020.3 -1 validated p.S240I 0.000 35 0% 200 22% 24 37.5% possibly_damaging(0.805) tolerated(0.4) neutral(0.319) NULL DCC 1630 genome.wustl.edu 37 18 50936933 50936933 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005215.3 +1 reviewed p.T1016I 1.000 167 0% 59 22% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ZNF407 55628 genome.wustl.edu 37 18 72343398 72343398 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017757.2 +1 reviewed p.D141 0.003 77 0% 105 16.2% 1 0% - - - NULL PIAS4 51588 genome.wustl.edu 37 19 4028788 4028788 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015897.2 +1 provisional p.L248P 1.000 16 0% 109 21.1% 11 63.6% benign(0.059) tolerated(0.11) neutral(0.276) NULL CAPS 828 genome.wustl.edu 37 19 5915237 5915237 + Silent SNP A A T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004058.3 +1 validated p.T158 0.000 15 0% 97 20.6% 704 50.4% - - - HMMSmart_EFh,superfamily_SSF47473 P2RY11 5032 genome.wustl.edu 37 19 10225305 10225305 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002566.4 +1 reviewed p.R339M 0.000 23 0% 44 22.7% 61 34.4% benign(0.267) deleterious(0.01) neutral(0.434) superfamily_Family A G protein-coupled receptor-like TYK2 7297 genome.wustl.edu 37 19 10477241 10477241 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003331.4 -1 reviewed p.V161L 1.000 21 0% 87 26.4% 16 31.2% benign(0.202) tolerated(0.59) neutral(0.024) HMMSmart_B41 KEAP1 9817 genome.wustl.edu 37 19 10610205 10610205 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_012289.3 -1 reviewed p.R169C 0.832 14 0% 100 28% 13 46.1% possibly_damaging(0.948) deleterious(0.01) deleterious(0.796) HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB OR7C1 26664 genome.wustl.edu 37 19 14910584 14910584 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_198944.1 -1 validated p.R122H 0.476 45 0% 123 18.7% 0 - probably_damaging(0.97) deleterious(0.02) deleterious(0.795) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 ENSG00000225607 0 genome.wustl.edu 37 19 15882883 15882883 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000412610 -1 known p.Q156* 1.000 46 0% 125 20% 0 - - - - HMMPfam_p450,superfamily_Cytochrome P450 NWD1 284434 genome.wustl.edu 37 19 16874676 16874676 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001007525.2 +1 validated p.A589V 0.983 21 0% 69 24.6% 1 0% probably_damaging(0.983) tolerated(0.52) neutral(0.438) NULL SUGP2 10147 genome.wustl.edu 37 19 19136994 19136994 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001017392.3 -1 reviewed p.D55N 0.986 11 0% 36 19.4% 5 0% benign(0.052) deleterious(0) neutral(0.448) NULL GMIP 51291 genome.wustl.edu 37 19 19751123 19751123 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_016573.2 -1 reviewed p.K137N 0.876 35 0% 126 21.4% 6 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ATP13A1 57130 genome.wustl.edu 37 19 19756563 19756563 + Missense_Mutation SNP G G C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020410.2 -1 validated p.P1133A 1.000 15 0% 100 20% 210 38% benign(0.076) tolerated(1) neutral(0.005) NULL ZNF792 126375 genome.wustl.edu 37 19 35449254 35449254 + Missense_Mutation SNP C C G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_175872.4 -1 validated p.G502A 0.981 41 0% 101 21.8% 1 0% probably_damaging(0.985) deleterious(0.02) deleterious(0.815) superfamily_C2H2 and C2HC zinc fingers SCN1B 6324 genome.wustl.edu 37 19 35524447 35524447 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_199037.3 +1 reviewed p.E84 0.996 26 0% 121 25.6% 1 100% - - - HMMPfam_ig,superfamily_SSF48726 DPF1 8193 genome.wustl.edu 37 19 38704353 38704353 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000355526 -1 known p.R334C 0.914 4 0.000 43 0.209 1 0% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD CATSPERG 57828 genome.wustl.edu 37 19 38849106 38849107 + Frame_Shift_Del DEL AG AG - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021185.4 +1 validated p.E468fs 0.000:0.173 - - - - - - - - - NULL ENSG00000213926 0 genome.wustl.edu 37 19 39745678 39745678 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000396851 -1 known p.L77S 0.998 8 0.000 25 0.320 0 - - - - HMMPfam_SelR,superfamily_Mss4-like DHX34 9704 genome.wustl.edu 37 19 47856393 47856393 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014681.5 +1 reviewed p.R36C 0.992 21 0% 62 25.8% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL POLD1 5424 genome.wustl.edu 37 19 50919778 50919778 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000376930 +1 known p.C949F 1.000 5 0.000 15 0.400 70 12.8% possibly_damaging(0.604) deleterious(0) deleterious(0.654) NULL ZNF613 79898 genome.wustl.edu 37 19 52448397 52448397 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001031721.3 +1 validated p.T421A 0.080 125 0% 88 18.2% 6 33.3% possibly_damaging(0.743) tolerated(0.12) deleterious(0.533) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF766 90321 genome.wustl.edu 37 19 52793485 52793485 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001010851.2 +1 validated p.S147 0.000 121 0% 95 20% 1 0% - - - superfamily_C2H2 and C2HC zinc fingers ZNF578 147660 genome.wustl.edu 37 19 53014345 53014345 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001099694.1 +1 validated p.G237 0.468 197 0% 86 25.6% 0 - - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF665 79788 genome.wustl.edu 37 19 53669364 53669364 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024733.3 -1 provisional p.R127C 0.000 116 0% 180 17.2% 0 - possibly_damaging(0.937) tolerated(0.08) deleterious(0.683) NULL MIR519D 574480 genome.wustl.edu 37 19 54216629 54216629 + RNA SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000385246 +1 known NULL 0.024 140 0% 129 19.4% 0 - - - - - NLRP13 126204 genome.wustl.edu 37 19 56443426 56443426 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_176810.2 -1 validated p.V84 0.000 35 0% 41 19.5% 0 - - - - HMMPfam_PAAD_DAPIN,superfamily_DEATH_like ZNF470 388566 genome.wustl.edu 37 19 57089527 57089527 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001001668.3 +1 validated p.G577D 0.213 87 0% 80 15% 3 0% probably_damaging(1) tolerated(0.61) deleterious(0.504) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 USP29 57663 genome.wustl.edu 37 19 57642512 57642512 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_020903.2 +1 validated p.Y823 1.000 49 0% 50 14% 0 - - - - HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001 ZNF606 80095 genome.wustl.edu 37 19 58490612 58490612 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_025027.3 -1 validated p.T479I 1.000 169 0.6% 109 14.7% 2 0% probably_damaging(0.954) deleterious(0.03) deleterious(0.762) superfamily_C2H2 and C2HC zinc fingers JAG1 182 genome.wustl.edu 37 20 10627626 10627627 + Frame_Shift_Del DEL CA CA - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000214.2 -1 reviewed p.C615fs 1.000:1.000 - - - - - - - - - HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196 JAG1 182 genome.wustl.edu 37 20 10639296 10639301 + In_Frame_Del DEL GCTTCA GCTTCA - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 GCTTCA GCTTCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000214.2 -1 reviewed p.LK170in_frame_del 1.000:1.000:1.000:1.000:0.937:0.999 - - - - - - - - - HMMPfam_DSL,HMMSmart_DSL TASP1 55617 genome.wustl.edu 37 20 13605882 13605882 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_017714.2 -1 reviewed p.E55K 1.000 159 0% 117 26.5% 1 0% possibly_damaging(0.942) tolerated(0.05) deleterious(0.732) superfamily_SSF56235 PYGB 5834 genome.wustl.edu 37 20 25255336 25255336 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002862.3 +1 reviewed p.G213S 0.998 25 0% 81 23.5% 2 0% benign(0.012) tolerated(0.16) neutral(0.060) HMMPfam_Phosphorylase,superfamily_SSF53756 AHCY 191 genome.wustl.edu 37 20 32878558 32878558 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_000687.2 -1 reviewed p.A249T 1.000 18 0% 126 21.4% 105 46.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like CTNNBL1 56259 genome.wustl.edu 37 20 36405792 36405792 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_030877.3 +1 reviewed p.L266 1.000 111 0% 82 19.5% 29 24.1% - - - superfamily_ARM repeat MYBL2 4605 genome.wustl.edu 37 20 42315528 42315528 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002466.2 +1 reviewed p.W106R 1.000 19 0% 61 19.7% 16 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding PIGT 51604 genome.wustl.edu 37 20 44048846 44048846 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015937.4 +1 reviewed p.T251M 0.494 39 0% 154 19.5% 47 27.6% possibly_damaging(0.948) tolerated(0.26) neutral(0.425) HMMPfam_Gpi16 WFDC2 10406 genome.wustl.edu 37 20 44098428 44098428 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006103.3 +1 reviewed p.A3T 0.013 4 0.000 47 0.191 457 43.3% probably_damaging(0.974) deleterious(0) deleterious(0.861) NULL SNX21 90203 genome.wustl.edu 37 20 44463093 44463093 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_033421.2 +1 reviewed p.S92L 0.192 7 0.000 38 0.395 4 50% benign(0) tolerated(0.34) neutral(0.023) NULL ZSWIM1 90204 genome.wustl.edu 37 20 44511373 44511373 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_080603.4 +1 validated p.L48 1.000 65 1.5% 217 19.8% 3 33.3% - - - NULL CDH4 1002 genome.wustl.edu 37 20 60485504 60485504 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001794.2 +1 reviewed p.R405 0.103 17 0% 64 20.3% 0 - - - - HMMPfam_Cadherin,superfamily_Cadherin ADAMTS5 11096 genome.wustl.edu 37 21 28304354 28304354 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007038.3 -1 reviewed p.G673D 1.000 42 0% 74 10.8% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL KRTAP19-1 337882 genome.wustl.edu 37 21 31852451 31852451 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_181607.1 -1 provisional p.Y62 0.018 79 0% 192 22.4% 0 - - - - NULL SYNJ1 8867 genome.wustl.edu 37 21 34003859 34003859 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003895.3 -1 validated p.R1390* 0.001 103 0% 86 23.3% 3 0% - - - NULL ABCG1 9619 genome.wustl.edu 37 21 43711617 43711617 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_004915.3 +1 reviewed p.P514T 1.000 21 0% 89 24.7% 15 0% possibly_damaging(0.69) tolerated(0.16) neutral(0.306) HMMPfam_ABC2_membrane TMPRSS3 64699 genome.wustl.edu 37 21 43803308 43803309 + Splice_Site INS - - TA novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_024022.2 -1 reviewed e7-1 1.000:1.000 - - - - - - - - - - TRAPPC10 7109 genome.wustl.edu 37 21 45511918 45511918 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003274.4 +1 reviewed p.T995 0.000 149 0.7% 259 20.8% 5 40% - - - NULL CCT8L2 150160 genome.wustl.edu 37 22 17073056 17073056 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_014406.4 -1 validated p.R129C 0.093 20 0% 89 20.2% 0 - possibly_damaging(0.876) deleterious(0.04) deleterious(0.690) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like CLTCL1 8218 genome.wustl.edu 37 22 19207420 19207420 + Missense_Mutation SNP G G T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007098.3 -1 reviewed p.P965T 1.000 23 0% 108 15.7% 0 - benign(0) tolerated(0.52) neutral(0.009) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat HIRA 7290 genome.wustl.edu 37 22 19396040 19396040 + Silent SNP A A T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003325.3 -1 reviewed p.I59 1.000 70 0% 94 19.1% 2 50% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like TXNRD2 10587 genome.wustl.edu 37 22 19868152 19868152 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_006440.3 -1 reviewed p.Y392C 0.997 31 0% 51 21.6% 26 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain AIFM3 150209 genome.wustl.edu 37 22 21329051 21329051 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_144704.2 +1 validated p.I222 0.979 9 0.000 77 0.208 2 0% - - - HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain SGSM1 129049 genome.wustl.edu 37 22 25320155 25320155 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001039948.2 +1 validated p.M1121V 1.000 23 0% 58 22.4% 0 - possibly_damaging(0.9) deleterious(0.01) deleterious(0.762) superfamily_Ypt/Rab-GAP domain of gyp1p EWSR1 2130 genome.wustl.edu 37 22 29693885 29693885 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005243.3 +1 reviewed p.R455W 0.996 64 0% 101 23.8% 325 31% unknown(0) deleterious(0.03) - superfamily_RNA-binding domain RBD MYH9 4627 genome.wustl.edu 37 22 36691022 36691022 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002473.4 -1 reviewed p.Q1196* 0.999 19 0% 119 18.5% 132 2.2% - - - HMMPfam_Myosin_tail_1,superfamily_Prefoldin EP300 2033 genome.wustl.edu 37 22 41565523 41565523 + Missense_Mutation SNP T T G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001429.3 +1 reviewed p.Y1397D 1.000 265 0.4% 147 21.8% 5 0% unknown(0) deleterious(0) - HMMPfam_DUF906 RANGAP1 5905 genome.wustl.edu 37 22 41650390 41650390 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002883.2 -1 reviewed p.E394 0.016 33 0% 188 19.1% 33 33.3% - - - NULL FAM109B 150368 genome.wustl.edu 37 22 42473963 42473963 + Silent SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001002034.2 +1 validated p.S222 0.980 10 0% 32 43.8% 1 0% - - - NULL CRELD2 79174 genome.wustl.edu 37 22 50316038 50316038 + Missense_Mutation SNP C C T rs186623329 by1000genomes TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001135101.1 +1 provisional p.T229M 0.000 25 4% 61 24.6% 4 0% probably_damaging(0.997) tolerated(0.08) deleterious(0.766) superfamily_Grow_fac_recept ARSH 347527 genome.wustl.edu 37 X 2928153 2928153 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001011719.1 +1 validated p.R59W 0.952 21 0% 72 23.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfatase,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core SHROOM2 357 genome.wustl.edu 37 X 9905292 9905296 + Frame_Shift_Del DEL CCTGC CCTGC - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 CCTGC CCTGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001649.2 +1 reviewed p.L1238fs 0.851:0.963:0.011:0.012:0.010 - - - - - - - - - NULL SH3KBP1 30011 genome.wustl.edu 37 X 19560229 19560229 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_031892.2 -1 reviewed p.A569V 0.002 31 0% 101 12.9% 54 11.1% benign(0) tolerated(0.53) neutral(0.007) NULL BCOR 54880 genome.wustl.edu 37 X 39922158 39922158 + Silent SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000427012 -1 known p.K33R 0.582 72 0% 385 15.8% 2 100% - - - NULL CASK 8573 genome.wustl.edu 37 X 41446202 41446202 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_003688.3 -1 reviewed p.D424 0.998 433 0% 216 19.4% 3 33.3% - - - HMMSmart_L27,HMMPfam_L27 RBM10 8241 genome.wustl.edu 37 X 47045696 47045696 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_005676.3 +1 reviewed p.D859 1.000 23 0% 96 13.5% 123 76.4% - - - HMMPfam_G-patch,HMMSmart_SM00443 TBC1D25 4943 genome.wustl.edu 37 X 48417699 48417699 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002536.2 +1 validated p.I224V 1.000 21 0% 66 27.3% 2 0% benign(0.005) tolerated(0.21) neutral(0.044) superfamily_Ypt/Rab-GAP domain of gyp1p ITIH6 347365 genome.wustl.edu 37 X 54783990 54783990 + Silent SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_198510.2 -1 reviewed p.H839 0.000 79 0% 269 17.5% 0 - - - - NULL ZXDA 7789 genome.wustl.edu 37 X 57935818 57935818 + Missense_Mutation SNP T T G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_007156.4 -1 reviewed p.N346T 1.000 27 0% 156 21.2% 0 - probably_damaging(0.965) deleterious(0.03) deleterious(0.771) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ACRC 93953 genome.wustl.edu 37 X 70823634 70823634 + Silent SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_052957.4 +1 validated p.P169 0.343 82 0% 192 22.4% 1 0% - - - NULL PHKA1 5255 genome.wustl.edu 37 X 71843050 71843050 + Silent SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002637.3 -1 reviewed p.P623 0.999 107 0% 96 16.7% 0 - - - - HMMPfam_PHK_AB GPR174 84636 genome.wustl.edu 37 X 78427096 78427096 + Missense_Mutation SNP C C T novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_032553.1 +1 validated p.L198F 1.000 67 0% 47 29.8% 1 0% benign(0.145) tolerated(0.05) neutral(0.358) HMMPfam_7tm_1,superfamily_SSF81321 HMGN5 79366 genome.wustl.edu 37 X 80370593 80370593 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_030763.2 -1 reviewed p.E135G 0.006 999 0% 491 15.7% 20 100% unknown(0) tolerated(0.05) - NULL ZCCHC16 340595 genome.wustl.edu 37 X 111698687 111698687 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001004308.2 +1 validated p.L244P 0.000 97 0% 44 29.5% 0 - probably_damaging(0.98) tolerated(0.36) neutral(0.444) NULL MIR1277 100302214 genome.wustl.edu 37 X 117520366 117520367 + RNA DEL AT AT - novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 AT AT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000408536 +1 known NULL 0.986:0.997 - - - - - - - - - - DOCK11 139818 genome.wustl.edu 37 X 117785949 117785949 + Missense_Mutation SNP T T C novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_144658.3 +1 validated p.L1535P 1.000 153 0% 67 17.9% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SEPT6 23157 genome.wustl.edu 37 X 118767331 118767331 + Nonsense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_015129.5 -1 reviewed p.E361* 1.000 208 0% 535 20.6% 37 0% - - - NULL BCORL1 63035 genome.wustl.edu 37 X 129150034 129150034 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_021946.3 +1 reviewed p.V1096I 0.000 19 0% 56 17.9% 1 100% benign(0) tolerated(0.71) neutral(0.002) NULL RENBP 5973 genome.wustl.edu 37 X 153205673 153205673 + Missense_Mutation SNP A A G novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_002910.5 -1 reviewed p.M320T 1.000 25 0% 73 21.9% 59 3.3% probably_damaging(1) tolerated(0.07) deleterious(0.819) superfamily_Six-hairpin glycosidases,HMMPfam_GlcNAc_2-epim TKTL1 8277 genome.wustl.edu 37 X 153539321 153539321 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a ENST00000426203 +1 known p.W144* 0.793 41 0% 213 20.7% 0 - benign(0.309) tolerated(0.68) neutral(0.099) HMMPfam_Transketolase_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding) TKTL1 8277 genome.wustl.edu 37 X 153556199 153556199 + Missense_Mutation SNP G G A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_012253.3 +1 validated p.V505I 0.997 160 0% 262 17.6% 0 - benign(0.059) tolerated(0.13) neutral(0.257) HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like FLNA 2316 genome.wustl.edu 37 X 153580787 153580787 + Missense_Mutation SNP C C A novel TCGA-BS-A0TA-01A-11D-A10B-09 TCGA-BS-A0TA-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1f167251-c06a-43d7-90cd-b4cd75a935ba 7b70f969-ae1a-4a96-a768-fd86cd32469a NM_001110556.1 -1 reviewed p.Q2177H 1.000 20 0% 72 16.7% 94 0% benign(0.049) tolerated(0.1) neutral(0.289) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin