Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain HIVEP3 59269 genome.wustl.edu 37 1 42047990 42047990 + Missense_Mutation SNP G G T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_024503.3 -1 validated p.Q827K 0.707 63 0% 77 41.6% 1 100% benign(0.014) tolerated(0.8) neutral(0.001) NULL LOC100130667 100130667 genome.wustl.edu 37 1 120165030 120165031 + In_Frame_Ins INS - - TCCTCAAGG rs113983233 byCluster;by1000genomes TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e XM_001715213.1 +1 model p.39in_frame_insRSS 0.001:0.001 - - - - - - - - - NULL SPTA1 6708 genome.wustl.edu 37 1 158650376 158650376 + Silent SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_003126.2 -1 reviewed p.A225 0.002 203 0% 60 53.3% 0 - - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat CENPF 1063 genome.wustl.edu 37 1 214820197 214820197 + Missense_Mutation SNP G G T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_016343.3 +1 reviewed p.E2428D 0.996 39 0% 20 40% 2 50% probably_damaging(0.994) deleterious(0.04) deleterious(0.801) HMMPfam_Cenp-F_leu_zip WDR64 128025 genome.wustl.edu 37 1 241964471 241964471 + Missense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_144625.4 +1 validated p.P620Q 0.900 161 0% 43 39.5% 0 - possibly_damaging(0.707) deleterious(0) deleterious(0.700) NULL SPTBN1 6711 genome.wustl.edu 37 2 54853150 54853150 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_003128.2 +1 reviewed p.E475K 1.000 202 0.5% 138 39.9% 25 24% benign(0.111) deleterious(0.01) neutral(0.414) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat CTNNB1 1499 genome.wustl.edu 37 3 41266112 41266112 + Missense_Mutation SNP T T G rs121913228 byCluster TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001098209.1 +1 reviewed p.S37A 1.000 131 0% 36 33.3% 124 36.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MECOM 2122 genome.wustl.edu 37 3 168818709 168818709 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e ENST00000494292 -1 known p.R929Q 1.000 184 0% 33 42.4% 42 52.3% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers POLR2B 5431 genome.wustl.edu 37 4 57861439 57861439 + Missense_Mutation SNP T T C novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_000938.1 +1 reviewed p.M200T 1.000 238 0% 138 39.1% 4 75% probably_damaging(0.989) tolerated(0.07) deleterious(0.758) HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase PIK3R1 5295 genome.wustl.edu 37 5 67589201 67589202 + Frame_Shift_Ins INS - - C novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_181523.1 +1 reviewed p.F398fs 1.000:1.000 - - - - - - - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain PIK3R1 5295 genome.wustl.edu 37 5 67591139 67591149 + Frame_Shift_Del DEL GACCAATACTT GACCAATACTT - novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 GACCAATACTT GACCAATACTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_181523.1 +1 reviewed p.Q579fs 1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL PCDHA12 56137 genome.wustl.edu 37 5 140255295 140255295 + Missense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_018903.2 +1 reviewed p.Q80K 1.000 100 0% 209 42.6% 0 - benign(0.001) tolerated(0.44) neutral(0.013) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like CAP2 10486 genome.wustl.edu 37 6 17507505 17507505 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_006366.2 +1 reviewed p.V136I 0.988 166 0% 63 50.8% 7 28.5% benign(0.01) tolerated(0.73) neutral(0.002) HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP HIST1H3J 8356 genome.wustl.edu 37 6 27858185 27858185 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_003535.2 -1 reviewed p.R129H 1.000 55 0% 85 37.6% 2 50% probably_damaging(0.999) - - HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold CNR1 1268 genome.wustl.edu 37 6 88854287 88854287 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_016083.4 -1 reviewed p.A236V 1.000 79 0% 45 44.4% 0 - probably_damaging(0.984) tolerated(0.08) deleterious(0.730) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ARID1B 57492 genome.wustl.edu 37 6 157405951 157405951 + Frame_Shift_Del DEL C C - novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_017519.2 +1 validated p.P661fs 1.000 - - - - - - - - - NULL PAPOLB 56903 genome.wustl.edu 37 7 4899668 4899668 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_020144.4 -1 validated p.E592K 0.231 244 0.4% 343 42.6% 0 - benign(0.002) tolerated(0.63) neutral(0.004) NULL ABCB4 5244 genome.wustl.edu 37 7 87069080 87069080 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_018849.2 -1 reviewed p.R545H 0.884 230 0.9% 97 27.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases HIPK2 28996 genome.wustl.edu 37 7 139416811 139416812 + Frame_Shift_Ins INS - - T rs36027798 TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e ENST00000263551 -1 known p.M8fs 1.000:1.000 - - - - - - - - - NULL NCAPG2 54892 genome.wustl.edu 37 7 158443529 158443529 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_017760.5 -1 validated p.R1024W 0.749 116 0% 116 36.2% 8 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL TNFRSF10A 8797 genome.wustl.edu 37 8 23082280 23082280 + Missense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_003844.3 -1 reviewed p.V99F 0.007 9 0.000 40 0.275 9 22.2% unknown(0) deleterious(0) - NULL ANK1 286 genome.wustl.edu 37 8 41526002 41526002 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001142446.1 -1 reviewed p.T1767M 0.000 180 0% 339 25.4% 0 - benign(0.137) deleterious(0.01) neutral(0.417) NULL TRAPPC9 83696 genome.wustl.edu 37 8 141468477 141468478 + In_Frame_Ins INS - - GTGACCCTCACGGTACCCCCC novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_031466.5 -1 reviewed p.62in_frame_insGGYREGH 0.000:0.000 - - - - - - - - - NULL C9orf79 286234 genome.wustl.edu 37 9 90500987 90500987 + Missense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_178828.4 +1 validated p.P529T 0.000 40 0% 67 40.3% 0 - benign(0.044) tolerated(0.05) neutral(0.348) NULL GJD4 219770 genome.wustl.edu 37 10 35897422 35897422 + Silent SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_153368.2 +1 validated p.S327 0.000 4 0.000 12 0.583 0 - - - - NULL SNCG 6623 genome.wustl.edu 37 10 88722373 88722373 + Missense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_003087.2 +1 reviewed p.P102T 0.014 220 0% 364 44.8% 5 20% benign(0.071) tolerated(0.13) neutral(0.258) HMMPfam_Synuclein PTEN 5728 genome.wustl.edu 37 10 89692905 89692905 + Missense_Mutation SNP G G T rs121913292 TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e ENST00000371953 +1 known p.R130L 1.000 321 0% 68 41.2% 24 58.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89711875 89711875 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e ENST00000371953 +1 known p.G165R 1.000 227 0% 86 43% 19 36.8% possibly_damaging(0.943) deleterious(0) deleterious(0.832) HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II LIPA 3988 genome.wustl.edu 37 10 90974762 90974762 + Silent SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_000235.2 -1 reviewed p.S341 0.870 48 0% 64 32.8% 11 27.2% - - - HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases MUC5B 727897 genome.wustl.edu 37 11 1267826 1267826 + Missense_Mutation SNP C C G novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_002458.1 +1 validated p.A3242G 0.000 703 0.1% 1132 42.7% 32 50% unknown(0) - - NULL RBMXL2 27288 genome.wustl.edu 37 11 7111073 7111073 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_014469.4 +1 reviewed p.R241H 1.000 6 0.000 24 0.375 0 - probably_damaging(0.997) tolerated(0.06) deleterious(0.788) NULL NAV2 89797 genome.wustl.edu 37 11 19955474 19955474 + Missense_Mutation SNP A A T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_182964.5 +1 validated p.S562C 1.000 74 0% 53 47.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL IGHMBP2 3508 genome.wustl.edu 37 11 68703759 68703759 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_002180.2 +1 reviewed p.A604V 0.997 62 0% 178 41.6% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases ODZ4 26011 genome.wustl.edu 37 11 78369110 78369110 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001098816.2 -1 validated p.R2768Q 1.000 157 0% 217 46.5% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL OR6X1 390260 genome.wustl.edu 37 11 123624711 123624711 + Silent SNP G G T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001005188.1 -1 provisional p.I172 0.915 219 0% 75 44% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ST14 6768 genome.wustl.edu 37 11 130059643 130059643 + Silent SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_021978.3 +1 reviewed p.S150 0.176 39 0% 73 38.4% 98 50% - - - HMMPfam_SEA,superfamily_SSF82671 DUSP16 80824 genome.wustl.edu 37 12 12630804 12630804 + Nonsense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_030640.2 -1 reviewed p.E321* 0.968 41 0% 105 31.4% 12 50% - - - NULL ERBB3 2065 genome.wustl.edu 37 12 56481806 56481806 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001982.2 +1 reviewed p.A245V 1.000 220 0% 263 61.2% 11 45.4% possibly_damaging(0.73) tolerated(0.06) deleterious(0.589) HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain MBD6 114785 genome.wustl.edu 37 12 57919199 57919199 + Nonsense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_052897.3 +1 validated p.R150* 1.000 38 0% 104 26% 15 0% - - - NULL ANKLE2 23141 genome.wustl.edu 37 12 133324776 133324776 + Nonsense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_015114.1 -1 validated p.W330* 1.000 332 0% 729 57.1% 21 23.8% - - - superfamily_Ankyrin repeat RNF6 6049 genome.wustl.edu 37 13 26789362 26789362 + Silent SNP T T A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_005977.3 -1 reviewed p.S219 0.343 314 0% 212 50.5% 12 33.3% - - - NULL CASC5 57082 genome.wustl.edu 37 15 40914270 40914270 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_170589.3 +1 validated p.S629F 0.187 99 0% 30 46.7% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL CSPG4 1464 genome.wustl.edu 37 15 75969570 75969570 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001897.4 -1 reviewed p.E1764K 0.003 21 0% 33 42.4% 17 0% benign(0.07) tolerated(0.48) neutral(0.015) NULL ARRDC4 91947 genome.wustl.edu 37 15 98512384 98512384 + Missense_Mutation SNP A A C novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_183376.2 +1 validated p.E219D 1.000 56 0% 59 42.4% 1 100% probably_damaging(0.988) tolerated(0.39) neutral(0.454) HMMPfam_Arrestin_C,superfamily_E set domains RPL3L 6123 genome.wustl.edu 37 16 1997325 1997325 + Silent SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_005061.2 -1 reviewed p.N186 0.364 93 0% 253 65.6% 1 100% - - - HMMPfam_Ribosomal_L3,superfamily_Translat_factor PALB2 79728 genome.wustl.edu 37 16 23614977 23614977 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_024675.3 -1 reviewed p.D1122N 0.994 97 0% 157 30.6% 12 58.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40_like ARHGAP17 55114 genome.wustl.edu 37 16 24942525 24942525 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001006634.1 -1 validated p.R699W 1.000 136 0% 215 36.7% 44 31.8% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL IRX3 79191 genome.wustl.edu 37 16 54317633 54317633 + Missense_Mutation SNP C C A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_024336.2 -1 validated p.A491S 0.990 198 0% 313 21.1% 15 53.3% unknown(0) deleterious(0) - NULL CSNK2A2 1459 genome.wustl.edu 37 16 58220753 58220753 + Missense_Mutation SNP T T G novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001896.2 -1 validated p.K75T 1.000 299 0% 187 36.4% 17 41.1% possibly_damaging(0.692) deleterious(0.01) deleterious(0.653) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CDH8 1006 genome.wustl.edu 37 16 62055241 62055241 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001796.2 -1 reviewed p.L23F 1.000 140 0% 60 45% 0 - benign(0.057) tolerated(0.23) neutral(0.045) NULL MYH8 4626 genome.wustl.edu 37 17 10310245 10310245 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_002472.2 -1 reviewed p.V673I 1.000 251 0% 89 47.2% 0 - possibly_damaging(0.488) tolerated(0.23) neutral(0.204) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 TOM1L2 146691 genome.wustl.edu 37 17 17766105 17766105 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001082968.1 -1 validated p.R381H 0.246 253 0% 216 42.6% 3 66.6% possibly_damaging(0.669) deleterious(0.04) deleterious(0.586) NULL SMCR7 125170 genome.wustl.edu 37 17 18166552 18166552 + Silent SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_148886.1 +1 reviewed p.S111 0.000 119 0% 274 23.7% 8 37.5% - - - NULL KRT28 162605 genome.wustl.edu 37 17 38953491 38953491 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_181535.3 -1 reviewed p.V245M 1.000 99 0% 127 40.2% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament RGS9 8787 genome.wustl.edu 37 17 63223463 63223463 + Missense_Mutation SNP A A G novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_003835.3 +1 reviewed p.T655A 0.000 118 0% 127 41.7% 2 0% benign(0) tolerated(1) - NULL AP1M2 10053 genome.wustl.edu 37 19 10692244 10692244 + Silent SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_005498.4 -1 reviewed p.N155 0.949 194 0% 214 49.5% 93 48.3% - - - NULL ZNF708 7562 genome.wustl.edu 37 19 21477021 21477021 + Silent SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_021269.2 -1 validated p.E249 0.995 54 0% 30 40% 3 66.6% - - - superfamily_C2H2 and C2HC zinc fingers EML2 24139 genome.wustl.edu 37 19 46124863 46124863 + Missense_Mutation SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_012155.1 -1 provisional p.A292T 0.997 26 0% 75 48% 12 41.6% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 SNX21 90203 genome.wustl.edu 37 20 44469298 44469298 + Silent SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_033421.2 +1 reviewed p.I156 0.982 67 0% 174 37.4% 19 0% - - - HMMPfam_PX,HMMSmart_PX,superfamily_PX DIP2A 23181 genome.wustl.edu 37 21 47957397 47957397 + Silent SNP C C T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_015151.3 +1 reviewed p.Y582 0.376 126 0% 117 54.7% 6 66.6% - - - superfamily_Acetyl-CoA synthetase-like ZDHHC8 29801 genome.wustl.edu 37 22 20130367 20130367 + Missense_Mutation SNP A A G novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_013373.3 +1 reviewed p.Y405C 0.990 37 0% 71 53.5% 9 33.3% possibly_damaging(0.861) deleterious(0) deleterious(0.778) NULL SHANK3 85358 genome.wustl.edu 37 22 51117290 51117290 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_001080420.1 +1 reviewed p.R181H 0.033 47 0% 84 40.5% 0 - probably_damaging(0.978) deleterious(0.01) deleterious(0.826) HMMPfam_Ank,superfamily_Ankyrin repeat ENSG00000211459 0 genome.wustl.edu 37 MT 1477 1477 + RNA SNP T T C novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e ENST00000389680 +1 known NULL NULL 13 0% 27 92.6% 2161 94.2% - - - - TBC1D25 4943 genome.wustl.edu 37 X 48417656 48417656 + Missense_Mutation SNP C C G novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_002536.2 +1 validated p.N209K 1.000 121 0% 119 44.5% 8 0% benign(0.224) deleterious(0) neutral(0.467) superfamily_Ypt/Rab-GAP domain of gyp1p PHF8 23133 genome.wustl.edu 37 X 54044120 54044120 + Missense_Mutation SNP G G A novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_015107.2 -1 reviewed p.T143I 1.000 167 0% 116 45.7% 8 0% possibly_damaging(0.946) deleterious(0.04) deleterious(0.739) superfamily_Clavaminate synthase-like MED12 9968 genome.wustl.edu 37 X 70338671 70338671 + Missense_Mutation SNP G G T novel TCGA-B5-A11V-01A-11D-A10M-09 TCGA-B5-A11V-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b4e615fe-feb2-42c4-a339-fa91ee690425 137c7e0b-9c01-4f05-b996-90456265a75e NM_005120.2 +1 reviewed p.D23Y 1.000 10 0% 31 48.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL