Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain CHD5 26038 genome.wustl.edu 37 1 6211198 6211198 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015557.1 -1 provisional p.R296S 1.000 40 0% 35 28.6% 0 - possibly_damaging(0.847) tolerated(0.72) neutral(0.327) NULL RERE 473 genome.wustl.edu 37 1 8425908 8425908 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001042681.1 -1 reviewed p.V471I 1.000 36 0% 26 46.2% 5 60% probably_damaging(0.985) tolerated(0.37) neutral(0.451) NULL TARDBP 23435 genome.wustl.edu 37 1 11080531 11080531 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_007375.3 +1 reviewed p.R197C 1.000 111 0% 119 37.8% 42 40.4% possibly_damaging(0.919) deleterious(0) deleterious(0.814) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD PHC2 1912 genome.wustl.edu 37 1 33840972 33840972 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_198040.2 -1 reviewed p.V57M 1.000 25 0% 30 30% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL CSMD2 114784 genome.wustl.edu 37 1 34006795 34006795 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_052896.3 -1 validated p.H2987R 0.335 73 0% 99 46.5% 0 - benign(0) tolerated(0.59) neutral(0.004) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain ZMYM6 9204 genome.wustl.edu 37 1 35474490 35474490 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_007167.3 -1 validated p.R510* 1.000 142 0% 198 41.4% 3 66.6% - - - HMMPfam_zf-FCS GRIK3 2899 genome.wustl.edu 37 1 37307343 37307343 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000831.3 -1 reviewed p.I508 0.267 26 0% 34 38.2% 0 - - - - HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850 RLF 6018 genome.wustl.edu 37 1 40705784 40705784 + Missense_Mutation SNP T T G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_012421.3 +1 validated p.S1804A 0.821 84 0% 132 40.9% 11 54.5% benign(0) tolerated(0.44) neutral(0.013) NULL SZT2 23334 genome.wustl.edu 37 1 43896737 43896737 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015284.2 +1 predicted p.T732M 0.649 43 0% 30 40% 1 100% benign(0.323) deleterious(0.04) neutral(0.450) NULL DMAP1 55929 genome.wustl.edu 37 1 44685127 44685127 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001034023.1 +1 reviewed p.G319A 1.000 31 0% 25 24% 106 47.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DMAP1 ORC1 4998 genome.wustl.edu 37 1 52850321 52850321 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004153.2 -1 reviewed p.Q552 1.000 35 0% 43 37.2% 1 0% - - - HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540 ZCCHC11 23318 genome.wustl.edu 37 1 52981598 52981598 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001009881.1 -1 validated p.R283C 1.000 199 0% 334 42.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TMEM48 55706 genome.wustl.edu 37 1 54273375 54273375 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_018087.4 -1 validated p.T282M 0.855 99 0% 132 40.9% 3 0% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_Ndc1_Nup USP24 23358 genome.wustl.edu 37 1 55560963 55560963 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015306.2 -1 validated p.V1896 0.999 151 0% 185 24.3% 4 25% - - - NULL USP24 23358 genome.wustl.edu 37 1 55563339 55563339 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015306.2 -1 validated p.I1723V 1.000 111 0% 171 33.9% 2 50% benign(0.279) tolerated(0.11) neutral(0.301) HMMPfam_UCH,superfamily_Cysteine proteinases HOOK1 51361 genome.wustl.edu 37 1 60294499 60294499 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000371208 +1 known p.D66G 1.000 216 0% 290 43.4% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_HOOK INADL 10207 genome.wustl.edu 37 1 62582249 62582249 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_176877.2 +1 reviewed p.A1567 0.004 75 0% 76 48.7% 12 50% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like INADL 10207 genome.wustl.edu 37 1 62594568 62594568 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_176877.2 +1 reviewed p.A1741E 0.927 82 0% 66 30.3% 5 40% possibly_damaging(0.88) tolerated(1) neutral(0.343) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like FUBP1 8880 genome.wustl.edu 37 1 78432410 78432410 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003902.3 -1 reviewed p.S147 0.958 112 0% 199 43.7% 15 80% - - - HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) GBP2 2634 genome.wustl.edu 37 1 89587571 89587572 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004120.3 -1 reviewed p.A26fs 0.024:0.008 - - - - - - - - - HMMPfam_GBP,superfamily_SSF52540 GBP7 388646 genome.wustl.edu 37 1 89613329 89613329 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_207398.2 -1 validated p.P429L 0.055 307 0% 340 11.5% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain ZNF644 84146 genome.wustl.edu 37 1 91383650 91383650 + Silent SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_201269.1 -1 validated p.T1250 0.981 402 0% 574 35.4% 13 53.8% - - - NULL ABCA4 24 genome.wustl.edu 37 1 94564497 94564497 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000350.2 -1 reviewed p.E207D 0.974 16 0% 16 43.8% 0 - benign(0.429) tolerated(0.61) neutral(0.144) NULL VAV3 10451 genome.wustl.edu 37 1 108313328 108313328 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006113.4 -1 reviewed p.R193Q 1.000 286 0% 780 43.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_DBL homology domain (DH-domain),superfamily_Calponin-homology domain CH-domain PI4KB 5298 genome.wustl.edu 37 1 151266606 151266606 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000446339 -1 known p.A25V 0.014 32 0% 40 35% 28 39.2% - - - superfamily_Protein kinase-like (PK-like) S100A8 6279 genome.wustl.edu 37 1 153362953 153362953 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002964.3 -1 reviewed p.S20F 0.978 93 0% 103 34% 26 11.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_S_100,superfamily_SSF47473 IQGAP3 128239 genome.wustl.edu 37 1 156518182 156518182 + Silent SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_178229.4 -1 validated p.G697 0.029 47 0% 43 20.9% 2 50% - - - NULL ISG20L2 81875 genome.wustl.edu 37 1 156697181 156697181 + Silent SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_030980.1 -1 provisional p.S88 0.003 82 0% 83 43.4% 3 66.6% - - - NULL OR10T2 128360 genome.wustl.edu 37 1 158368475 158368475 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001004475.1 -1 provisional p.R261L 0.312 52 0% 36 47.2% 0 - benign(0.26) deleterious(0.01) neutral(0.433) HMMPfam_7tm_1,superfamily_SSF81321 PRRC2C 23215 genome.wustl.edu 37 1 171544168 171544168 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015172.3 +1 validated p.S2284G 0.938 112 0% 148 32.4% 15 13.3% possibly_damaging(0.94) - - NULL RABGAP1L 9910 genome.wustl.edu 37 1 174200461 174200461 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014857.3 +1 validated p.L170 0.992 179 0% 236 41.1% 1 0% - - - HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like NMNAT2 23057 genome.wustl.edu 37 1 183262858 183262858 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015039.2 -1 reviewed p.H52 1.000 74 0% 98 43.9% 0 - - - - HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase TPR 7175 genome.wustl.edu 37 1 186302265 186302265 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003292.2 -1 reviewed p.V1815A 1.000 52 0% 52 38.5% 27 55.5% possibly_damaging(0.448) tolerated(0.08) neutral(0.447) NULL HADHB 3032 genome.wustl.edu 37 2 26486333 26486333 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000183.2 +1 reviewed p.L65 1.000 190 0% 256 37.5% 34 38.2% - - - HMMPfam_Thiolase_N,superfamily_Thiolase-like DHX57 90957 genome.wustl.edu 37 2 39088340 39088340 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_198963.1 -1 provisional p.S404 0.350 121 0% 187 39.6% 2 0% - - - HMMPfam_RWD THADA 63892 genome.wustl.edu 37 2 43768345 43768345 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001083953.1 -1 validated p.M1073V 0.000 78 0% 56 14.3% 0 - benign(0) tolerated(0.38) neutral(0.018) HMMPfam_DUF2428 MOGS 7841 genome.wustl.edu 37 2 74688908 74688908 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006302.2 -1 reviewed p.Q670E 1.000 31 0% 20 40% 59 44% possibly_damaging(0.906) tolerated(0.78) neutral(0.360) HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases LOC730268 730268 genome.wustl.edu 37 2 88019352 88019352 + Silent SNP T T A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e XM_002342213.1 +1 model p.G302 1.000 49 0% 62 19.4% 0 - - - - NULL INPP4A 3631 genome.wustl.edu 37 2 99154393 99154394 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001134224.1 +1 reviewed p.R180fs 1.000:1.000 - - - - - - - - - NULL INPP4A 3631 genome.wustl.edu 37 2 99181122 99181122 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001134224.1 +1 reviewed p.G688D 1.000 15 0% 20 35% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL EIF5B 9669 genome.wustl.edu 37 2 99976805 99976805 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015904.3 +1 reviewed p.K48E 1.000 116 0% 317 38.2% 10 40% unknown(0) deleterious(0) - NULL NEB 4703 genome.wustl.edu 37 2 152510504 152510504 + Splice_Site SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004543.4 -1 reviewed e50+2 1.000 151 0% 169 38.5% 0 - - - - - GALNT5 11227 genome.wustl.edu 37 2 158115956 158115956 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014568.1 +1 provisional p.E454D 1.000 74 0% 125 37.6% 0 - benign(0.132) tolerated(0.07) neutral(0.330) NULL TTN 7273 genome.wustl.edu 37 2 179408965 179408965 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_133378.4 -1 reviewed p.A29429V 0.203 98 0% 70 32.9% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179474467 179474467 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000356127 -1 known p.A14660V 1.000 141 0% 35 51.4% 0 - benign(0.29) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179638970 179638970 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_133379.3 -1 reviewed p.D2341N 1.000 107 0% 110 15.5% 0 - probably_damaging(0.965) - - HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726 SPEG 10290 genome.wustl.edu 37 2 220353340 220353340 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005876.4 +1 validated p.T2660I 0.993 22 0% 11 36.4% 0 - possibly_damaging(0.919) tolerated(0.07) deleterious(0.689) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin SPATA3 130560 genome.wustl.edu 37 2 231861028 231861028 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_139073.3 +1 validated p.T27I 0.000 116 0% 129 47.3% 0 - possibly_damaging(0.901) tolerated(0.08) deleterious(0.657) NULL GIGYF2 26058 genome.wustl.edu 37 2 233704620 233704620 + Frame_Shift_Del DEL C C - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001103147.1 +1 reviewed p.T964fs 0.968 - - - - - - - - - NULL DGKD 8527 genome.wustl.edu 37 2 234346920 234346920 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_152879.2 +1 reviewed p.N327S 1.000 61 0% 87 28.7% 0 - probably_damaging(0.964) deleterious(0.02) deleterious(0.789) HMMPfam_DAGK_cat,HMMSmart_SM00046 NDUFA10 4705 genome.wustl.edu 37 2 240957252 240957252 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000307300 -1 known p.R216K 0.000 4 0.000 33 0.182 0 - benign(0.104) deleterious(0.05) neutral(0.353) superfamily_SSF52540 GRIP2 80852 genome.wustl.edu 37 3 14549147 14549147 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001080423.1 -1 provisional p.R812W 1.000 35 0% 24 45.8% 0 - - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like METTL6 131965 genome.wustl.edu 37 3 15452936 15452936 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_152396.2 -1 validated p.A228T 1.000 187 0% 197 10.7% 6 16.6% benign(0.001) tolerated(0.59) neutral(0.004) superfamily_S-adenosyl-L-methionine-dependent methyltransferases ANKRD28 23243 genome.wustl.edu 37 3 15727522 15727522 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015199.2 -1 provisional p.A689E 1.000 172 0% 237 52.7% 1 0% probably_damaging(0.974) deleterious(0.02) deleterious(0.799) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ZNF501 115560 genome.wustl.edu 37 3 44776365 44776365 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_145044.2 +1 validated p.R151H 0.009 188 0% 316 38.3% 0 - possibly_damaging(0.922) tolerated(0.21) neutral(0.415) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TRAIP 10293 genome.wustl.edu 37 3 49885601 49885601 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005879.2 -1 reviewed p.R44Q 1.000 64 0% 77 50.6% 1 100% possibly_damaging(0.666) tolerated(0.13) deleterious(0.488) HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 VPRBP 9730 genome.wustl.edu 37 3 51459868 51459868 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014703.2 -1 validated p.R568L 1.000 91 0% 116 47.4% 4 75% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) superfamily_ARM repeat BAP1 8314 genome.wustl.edu 37 3 52436395 52436395 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004656.2 -1 reviewed p.R700Q 1.000 12 0% 13 53.8% 29 44.8% probably_damaging(0.997) tolerated(0.06) deleterious(0.788) NULL ACOX2 8309 genome.wustl.edu 37 3 58510265 58510266 + Frame_Shift_Del DEL GA GA - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003500.3 -1 reviewed p.P472fs 0.063:0.059 - - - - - - - - - NULL MAGI1 9223 genome.wustl.edu 37 3 65346923 65346923 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000460329 -1 known p.A1102V 0.999 128 0% 167 11.4% 14 7.1% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like COPB2 9276 genome.wustl.edu 37 3 139079976 139079976 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004766.2 -1 validated p.A719 0.022 128 0% 100 10% 97 10.3% - - - HMMPfam_Coatomer_WDAD HLTF 6596 genome.wustl.edu 37 3 148789143 148789143 + Missense_Mutation SNP A A G rs140551459 TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003071.3 -1 reviewed p.W264R 1.000 338 0% 506 43.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases PIK3CA 5290 genome.wustl.edu 37 3 178916891 178916891 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006218.2 +1 reviewed p.R93Q 1.000 109 0% 212 42% 0 - probably_damaging(0.999) tolerated(0.24) deleterious(0.528) HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B SPON2 10417 genome.wustl.edu 37 4 1164359 1164359 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000290902 -1 known p.T214 0.013 91 0% 63 25.4% 57 24.5% - - - HMMPfam_Spond_N HTT 3064 genome.wustl.edu 37 4 3127339 3127339 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002111.6 +1 reviewed p.S462N 1.000 88 0% 86 27.9% 0 - possibly_damaging(0.538) deleterious(0.03) deleterious(0.546) superfamily_ARM repeat NPFFR2 10886 genome.wustl.edu 37 4 73013008 73013008 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004885.2 +1 reviewed p.R350G 0.981 42 0% 50 40% 0 - benign(0.106) tolerated(0.4) neutral(0.024) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PTPN13 5783 genome.wustl.edu 37 4 87683990 87683990 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_080685.2 +1 reviewed p.R1222C 0.580 58 0% 38 31.6% 2 50% possibly_damaging(0.941) deleterious(0) deleterious(0.831) NULL RAP1GDS1 5910 genome.wustl.edu 37 4 99358094 99358094 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001100426.1 +1 validated p.T525I 1.000 255 0% 523 44.9% 17 47% probably_damaging(0.959) tolerated(0.2) neutral(0.452) superfamily_ARM repeat MTTP 4547 genome.wustl.edu 37 4 100540225 100540225 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000253.2 +1 reviewed p.Y771C 1.000 277 0% 314 28% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL MANBA 4126 genome.wustl.edu 37 4 103635609 103635609 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005908.3 -1 reviewed p.F220S 0.985 152 0% 266 38.7% 0 - benign(0.008) tolerated(0.23) neutral(0.042) NULL EGF 1950 genome.wustl.edu 37 4 110909858 110909858 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001963.4 +1 reviewed p.H909 0.722 99 0% 64 40.6% 0 - - - - HMMSmart_EGF_CA,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196 C4orf21 55345 genome.wustl.edu 37 4 113462392 113462392 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000505019 -1 known p.Y1877 0.997 121 0% 124 33.1% 4 50% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases PET112 5188 genome.wustl.edu 37 4 152594036 152594036 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004564.2 -1 validated p.L475M 0.207 19 0% 42 33.3% 24 29.1% benign(0.025) tolerated(1) neutral(0.001) superfamily_GatB/YqeY domain,HMMPfam_GatB_Yqey NPY2R 4887 genome.wustl.edu 37 4 156135236 156135236 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000910.2 +1 provisional p.V49I 1.000 163 0% 158 46.2% 0 - possibly_damaging(0.938) deleterious(0.05) deleterious(0.729) superfamily_Family A G protein-coupled receptor-like RXFP1 59350 genome.wustl.edu 37 4 159529174 159529174 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_021634.2 +1 provisional p.G172E 1.000 148 0% 222 26.1% 0 - probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like RAPGEF2 9693 genome.wustl.edu 37 4 160273951 160273951 + Nonsense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014247.2 +1 validated p.S1166* 0.141 147 0% 177 36.7% 2 100% - - - NULL MAP3K1 4214 genome.wustl.edu 37 5 56161195 56161195 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005921.1 +1 validated p.C355Y 1.000 136 0% 142 38% 5 40% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_SWIM KCNN2 3781 genome.wustl.edu 37 5 113740267 113740267 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_021614.2 +1 reviewed p.A239T 1.000 219 0% 186 40.9% 0 - benign(0.017) tolerated(0.32) neutral(0.025) NULL DMXL1 1657 genome.wustl.edu 37 5 118485645 118485645 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005509.4 +1 validated p.T1375A 1.000 84 0% 88 39.8% 0 - benign(0.413) deleterious(0.01) deleterious(0.539) NULL PCDHA7 56141 genome.wustl.edu 37 5 140214923 140214923 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_018910.2 +1 reviewed p.P319T 0.292 168 0% 178 14.6% 0 - benign(0) tolerated(0.44) neutral(0.013) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA9 9752 genome.wustl.edu 37 5 140229035 140229035 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_031857.1 +1 reviewed p.P319T 0.001 83 0% 113 32.7% 0 - benign(0.009) tolerated(0.46) neutral(0.013) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA9 9752 genome.wustl.edu 37 5 140230488 140230488 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014005.3 +1 reviewed p.S803N 0.000 56 0% 70 38.6% 0 - benign(0.041) tolerated(0.28) neutral(0.034) NULL PCDHGB6 56100 genome.wustl.edu 37 5 140787977 140787977 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_018926.2 +1 reviewed p.A70T 0.000 125 0% 214 27.6% 0 - benign(0.017) tolerated(0.57) neutral(0.007) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like GPR151 134391 genome.wustl.edu 37 5 145895279 145895279 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_194251.2 -1 provisional p.A133V 1.000 71 0% 47 46.8% 0 - probably_damaging(0.995) tolerated(0.2) deleterious(0.507) HMMPfam_7tm_1,superfamily_SSF81321 HTR4 3360 genome.wustl.edu 37 5 147900486 147900486 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001040172.2 -1 reviewed p.A183V 0.004 76 0% 39 38.5% 0 - benign(0) tolerated(0.42) neutral(0.014) HMMPfam_7tm_1,superfamily_SSF81321 ENSG00000251133 0 genome.wustl.edu 37 5 175716453 175716453 + RNA SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000505928 -1 novel NULL 0.000 14 0% 17 47.1% 0 - - - - - JARID2 3720 genome.wustl.edu 37 6 15520402 15520402 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004973.2 +1 reviewed p.R1221C 1.000 63 0% 55 34.5% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NUP153 9972 genome.wustl.edu 37 6 17688850 17688850 + Splice_Site SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005124.2 -1 reviewed e2-1 1.000 102 0% 135 37% 0 - - - - - RNF144B 255488 genome.wustl.edu 37 6 18457581 18457581 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_182757.2 +1 validated p.T176I 0.930 41 0% 42 38.1% 0 - benign(0.045) tolerated(0.19) neutral(0.052) NULL HIST1H4E 8367 genome.wustl.edu 37 6 26204929 26204941 + Frame_Shift_Del DEL CCGTAAGGTCCTG CCGTAAGGTCCTG - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 CCGTAAGGTCCTG CCGTAAGGTCCTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003545.3 +1 reviewed p.R20fs 1.000:1.000:1.000:0.832:0.998:1.000:1.000:1.000:1.000:0.972:0.989:1.000:1.000 - - - - - - - - - HMMSmart_SM00417,superfamily_Histone-fold ZNF184 7738 genome.wustl.edu 37 6 27420247 27420247 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_007149.2 -1 validated p.C364F 1.000 92 0% 126 38.9% 3 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF192 7745 genome.wustl.edu 37 6 28121102 28121102 + Missense_Mutation SNP A A C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006298.2 +1 validated p.K348N 0.998 92 0% 111 38.7% 0 - probably_damaging(0.99) tolerated(0.07) deleterious(0.760) superfamily_C2H2 and C2HC zinc fingers C6orf136 221545 genome.wustl.edu 37 6 30617510 30617510 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001109938.2 +1 validated p.W83L 0.856 75 0% 83 38.6% 4 25% possibly_damaging(0.462) tolerated(0.29) neutral(0.180) NULL LEMD2 221496 genome.wustl.edu 37 6 33747922 33747922 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_181336.3 -1 validated p.A322V 0.975 43 0% 69 44.9% 24 58.3% probably_damaging(0.978) tolerated(0.26) neutral(0.455) NULL FGD2 221472 genome.wustl.edu 37 6 36982668 36982668 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_173558.3 +1 validated p.E295Q 1.000 13 0% 12 58.3% 0 - probably_damaging(0.974) tolerated(0.1) deleterious(0.702) superfamily_DBL homology domain (DH-domain) C6orf130 221443 genome.wustl.edu 37 6 41035088 41035088 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_145063.2 -1 predicted p.V149M 0.997 161 0% 142 31% 22 18.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52949 SLC29A1 2030 genome.wustl.edu 37 6 44198193 44198193 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001078174.1 +1 reviewed p.S188 0.002 49 0% 26 34.6% 7 0% - - - HMMPfam_Nucleoside_tran FILIP1 27145 genome.wustl.edu 37 6 76072525 76072525 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015687.2 -1 validated p.R129* 1.000 67 0% 73 27.4% 0 - - - - HMMPfam_CortBP2 PNISR 25957 genome.wustl.edu 37 6 99849181 99849183 + In_Frame_Del DEL AGA AGA - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 AGA AGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015491.1 -1 validated p.S551in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL ARMC2 84071 genome.wustl.edu 37 6 109190136 109190136 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_032131.4 +1 validated p.R134H 0.996 44 2.3% 42 38.1% 7 14.2% probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL FAM54A 113115 genome.wustl.edu 37 6 136560837 136560837 + Silent SNP T T A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001099286.1 -1 validated p.P212 0.719 96 0% 192 40.1% 5 20% - - - HMMPfam_DUF729 MAP7 9053 genome.wustl.edu 37 6 136683831 136683831 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003980.3 -1 reviewed p.A428V 0.013 42 0% 29 44.8% 5 0% unknown(0) tolerated(1) - NULL SDK1 221935 genome.wustl.edu 37 7 4008911 4008911 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_152744.3 +1 validated p.G523 1.000 22 0% 41 51.2% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin ZDHHC4 55146 genome.wustl.edu 37 7 6620230 6620230 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001134387.1 +1 validated p.S13L 0.001 323 0% 362 43.6% 22 50% benign(0) tolerated(0.67) neutral(0.003) NULL DNAH11 8701 genome.wustl.edu 37 7 21847595 21847595 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003777.3 +1 reviewed p.Y3427 0.001 70 0% 59 10.2% 1 0% - - - NULL IKZF1 10320 genome.wustl.edu 37 7 50455151 50455151 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000331340 +1 known p.P233L 1.000 30 0% 49 49% 0 - benign(0.025) tolerated(0.09) neutral(0.297) NULL GRM3 2913 genome.wustl.edu 37 7 86469106 86469106 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000840.2 +1 reviewed p.R759Q 1.000 89 0% 72 45.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_3 CLDN12 9069 genome.wustl.edu 37 7 90042675 90042675 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_012129.3 +1 validated p.R229S 1.000 39 0% 70 35.7% 2 50% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL MUC3A 4584 genome.wustl.edu 37 7 100550032 100550033 + In_Frame_Ins INS - - CCT rs111723000 TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e XM_001725354.2 +1 model p.208in_frame_insS 0.165:0.003 - - - - - - - - - NULL MUC12 10071 genome.wustl.edu 37 7 100612955 100612956 + In_Frame_Ins INS - - CTG novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000379442 +1 known p.19in_frame_insA 0.000:0.000 - - - - - - - - - NULL MUC12 10071 genome.wustl.edu 37 7 100636231 100636231 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000379442 +1 known p.T939M 0.002 304 0% 325 14.2% 0 - probably_damaging(1) - - NULL CHRM2 1129 genome.wustl.edu 37 7 136700369 136700369 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000739.2 +1 reviewed p.D253N 0.958 45 0% 22 27.3% 0 - benign(0.018) tolerated(0.36) neutral(0.021) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like EPHB6 2051 genome.wustl.edu 37 7 142561896 142561896 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004445.3 +1 reviewed p.A113V 0.997 6 0.000 10 0.500 4 75% probably_damaging(0.964) deleterious(0) deleterious(0.851) HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like OR7E8P 346708 genome.wustl.edu 37 8 12542232 12542232 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000317826 -1 known p.C152Y 1.000 64 0% 132 42.4% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 PDGFRL 5157 genome.wustl.edu 37 8 17486234 17486234 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006207.1 +1 reviewed p.A248 0.004 58 0% 53 20.8% 0 - - - - superfamily_Immunoglobulin CCDC25 55246 genome.wustl.edu 37 8 27614246 27614246 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_018246.2 -1 validated p.R53Q 1.000 145 0.7% 178 37.6% 7 28.5% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_DUF814 HMBOX1 79618 genome.wustl.edu 37 8 28908593 28908593 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001135726.1 +1 validated p.A395V 1.000 106 0% 68 50% 1 100% benign(0.04) tolerated(0.28) neutral(0.034) NULL ASH2L 9070 genome.wustl.edu 37 8 37967910 37967910 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004674.3 +1 validated p.F139L 1.000 111 0% 144 38.2% 7 28.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL CYP7B1 9420 genome.wustl.edu 37 8 65537090 65537090 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004820.3 -1 reviewed p.P43 1.000 112 0% 196 48% 0 - - - - superfamily_Cytochrome P450 FAM91A1 157769 genome.wustl.edu 37 8 124781001 124781001 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_144963.2 +1 validated p.A20V 1.000 14 0.000 8 0.875 0 - benign(0.174) tolerated(0.49) neutral(0.027) NULL KIF24 347240 genome.wustl.edu 37 9 34256198 34256198 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_194313.2 -1 validated p.R1136H 0.144 13 0% 12 66.7% 2 0% benign(0.002) tolerated(0.59) neutral(0.004) NULL C9orf71 169693 genome.wustl.edu 37 9 71152302 71152302 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_153237.1 -1 provisional p.T129M 0.010 82 0% 32 28.1% 5 60% probably_damaging(0.969) tolerated(0.22) neutral(0.453) NULL APBA1 320 genome.wustl.edu 37 9 72130951 72130951 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001163.3 -1 reviewed p.D392 0.113 19 0% 15 26.7% 0 - - - - NULL ZCCHC6 79670 genome.wustl.edu 37 9 88938314 88938314 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_024617.3 -1 validated p.E784G 0.089 162 0% 171 47.4% 2 50% benign(0.014) deleterious(0) neutral(0.445) NULL BAAT 570 genome.wustl.edu 37 9 104130497 104130497 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001127610.1 -1 reviewed p.A192T 0.985 113 0% 83 37.3% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_SSF53474 SVEP1 79987 genome.wustl.edu 37 9 113209210 113209210 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_153366.3 -1 validated p.P1411S 1.000 139 0% 220 38.2% 0 - probably_damaging(0.998) tolerated(0.19) deleterious(0.524) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin CNTRL 11064 genome.wustl.edu 37 9 123912589 123912589 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_007018.4 +1 reviewed p.A1264V 1.000 107 0% 66 33.3% 1 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL ZBTB6 10773 genome.wustl.edu 37 9 125673282 125673282 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006626.4 -1 provisional p.T357I 0.015 59 0% 79 36.7% 1 0% benign(0.072) tolerated(0.12) neutral(0.266) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers NAIF1 203245 genome.wustl.edu 37 9 130825822 130825822 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_197956.3 -1 validated p.R290Q 1.000 26 0% 15 33.3% 4 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MED22 6837 genome.wustl.edu 37 9 136213509 136213509 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_133640.3 -1 reviewed p.Q3 0.991 58 0% 60 45% 1 0% - - - HMMPfam_SURF5 BRD3 8019 genome.wustl.edu 37 9 136910513 136910513 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_007371.3 -1 reviewed p.A373T 1.000 11 0% 19 42.1% 6 50% probably_damaging(0.957) tolerated(0.06) deleterious(0.723) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1 KCNT1 57582 genome.wustl.edu 37 9 138669247 138669247 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020822.2 +1 validated p.V805I 1.000 25 0% 26 42.3% 0 - possibly_damaging(0.842) deleterious(0.03) deleterious(0.686) NULL FAM208B 54906 genome.wustl.edu 37 10 5803347 5803347 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_017782.4 +1 validated p.R2363* 0.085 125 0% 145 46.9% 26 34.6% - - - NULL ARMC4 55130 genome.wustl.edu 37 10 28149666 28149666 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_018076.2 -1 validated p.R970H 0.999 47 0% 36 27.8% 13 61.5% benign(0.083) tolerated(0.15) neutral(0.247) HMMSmart_SM00185,superfamily_ARM repeat ITGB1 3688 genome.wustl.edu 37 10 33212526 33212526 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_033667.2 -1 reviewed p.M310T 1.000 80 0% 103 37.9% 13 38.4% possibly_damaging(0.895) tolerated(0.59) neutral(0.357) HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300 ALOX5 240 genome.wustl.edu 37 10 45941070 45941072 + In_Frame_Del DEL AAG AAG - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 AAG AAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000698.2 +1 reviewed p.K656in_frame_del 1.000:1.000:1.000 - - - - - - - - - HMMPfam_Lipoxygenase,superfamily_Lipoxygenase ZCCHC24 219654 genome.wustl.edu 37 10 81154182 81154182 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000372333 -1 known p.R95* 0.269 56 0% 37 43.2% 0 - - - - NULL PTEN 5728 genome.wustl.edu 37 10 89692904 89692904 + Missense_Mutation SNP C C G rs121909224 byCluster TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000371953 +1 known p.R130G 1.000 181 0% 249 41% 26 19.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PYROXD2 84795 genome.wustl.edu 37 10 100159901 100159901 + Silent SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_032709.2 -1 validated p.E143 0.999 27 0% 28 35.7% 0 - - - - superfamily_SSF51905 CALHM3 119395 genome.wustl.edu 37 10 105233278 105233278 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001129742.1 -1 validated p.V243M 1.000 4 0.000 9 0.556 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL ACSL5 51703 genome.wustl.edu 37 10 114177682 114177682 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_016234.3 +1 reviewed p.A489T 1.000 78 0% 69 31.9% 12 16.6% benign(0.417) tolerated(0.11) neutral(0.407) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like FGFR2 2263 genome.wustl.edu 37 10 123279677 123279677 + Missense_Mutation SNP G G C rs79184941 byCluster TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_022970.3 -1 reviewed p.S252W 1.000 43 0% 48 31.2% 12 41.6% probably_damaging(0.963) tolerated(0.07) deleterious(0.725) NULL CDHR5 53841 genome.wustl.edu 37 11 619357 619357 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_021924.4 -1 reviewed p.A443T 0.001 47 0% 42 47.6% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) superfamily_Cadherin-like MUC5B 727897 genome.wustl.edu 37 11 1270448 1270448 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002458.1 +1 validated p.S4116N 0.001 83 0% 89 10.1% 0 - unknown(0) - - NULL OR51B6 390058 genome.wustl.edu 37 11 5373165 5373165 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001004750.1 +1 provisional p.G143D 0.929 137 0% 141 27.7% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_7tm_1,superfamily_SSF81321 ANO3 63982 genome.wustl.edu 37 11 26463464 26463464 + Splice_Site SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_031418.2 +1 validated e2-1 1.000 64 0% 116 46.6% 0 - - - - - DCDC5 100506627 genome.wustl.edu 37 11 30944140 30944140 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e XM_002343054.1 -1 model p.I166V 0.039 269 0% 298 44% 0 - benign(0.026) tolerated(0.86) neutral(0.002) superfamily_Doublecortin (DC) CSTF3 1479 genome.wustl.edu 37 11 33124658 33124658 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001326.2 -1 reviewed p.A220T 1.000 273 0% 393 42.5% 3 33.3% benign(0.087) tolerated(0.21) neutral(0.050) superfamily_TPR-like ZBTB3 79842 genome.wustl.edu 37 11 62520788 62520788 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_024784.3 -1 validated p.R167W 1.000 27 0% 20 40% 2 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB KCNK7 10089 genome.wustl.edu 37 11 65361004 65361004 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_033347.1 -1 reviewed p.G221S 0.020 16 0% 12 41.7% 0 - benign(0.426) deleterious(0.01) deleterious(0.544) superfamily_Voltage-gated potassium channels SPTBN2 6712 genome.wustl.edu 37 11 66478492 66478492 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006946.2 -1 reviewed p.V261M 1.000 47 0% 67 41.8% 3 0% possibly_damaging(0.816) tolerated(0.18) neutral(0.364) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain INTS4 92105 genome.wustl.edu 37 11 77594924 77594924 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_033547.3 -1 validated p.R889 0.474 61 0% 36 38.9% 39 41% - - - NULL ENSG00000214391 0 genome.wustl.edu 37 11 90016631 90016631 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000318973 +1 known p.A269V 1.000 135 0% 144 41.7% 0 - - - - superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C KIAA1731 85459 genome.wustl.edu 37 11 93417145 93417145 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_033395.1 +1 validated p.L322P 1.000 62 0% 74 28.4% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL PIWIL4 143689 genome.wustl.edu 37 11 94301960 94301960 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_152431.2 +1 validated p.R51K 0.000 164 0% 250 44.8% 0 - benign(0.001) tolerated(0.21) neutral(0.044) NULL PGR 5241 genome.wustl.edu 37 11 100920786 100920786 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000926.4 -1 reviewed p.R788G 1.000 81 0% 47 72.3% 5 20% probably_damaging(0.954) deleterious(0) deleterious(0.842) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain CXCR5 643 genome.wustl.edu 37 11 118764338 118764338 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001716.3 +1 validated p.D29N 0.024 16 0% 19 47.4% 0 - benign(0.006) tolerated(0.52) neutral(0.009) superfamily_Family A G protein-coupled receptor-like PRDM10 56980 genome.wustl.edu 37 11 129793189 129793189 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020228.2 -1 reviewed p.S667L 1.000 63 1.6% 53 39.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_C2H2 and C2HC zinc fingers IGSF9B 22997 genome.wustl.edu 37 11 133807732 133807732 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014987.1 -1 validated p.T178 0.000 51 0% 38 52.6% 1 0% - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 FBXL14 144699 genome.wustl.edu 37 12 1702201 1702201 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_152441.2 -1 validated p.T344 0.576 17 0% 15 40% 14 35.7% - - - superfamily_SSF52047 GAPDH 2597 genome.wustl.edu 37 12 6646115 6646115 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002046.3 +1 reviewed p.D89G 1.000 42 0% 32 59.4% 2550 46.1% benign(0) deleterious(0.01) neutral(0.406) HMMPfam_Gp_dh_N,superfamily_NAD(P)-binding Rossmann-fold domains KLHDC5 57542 genome.wustl.edu 37 12 27934137 27934137 + Splice_Site SNP T T G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020782.1 +1 validated e1+2 1.000 14 0% 23 56.5% 2 100% - - - - KIF21A 55605 genome.wustl.edu 37 12 39716651 39716651 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_017641.3 -1 validated p.L1151 1.000 99 0% 95 49.5% 3 66.6% - - - superfamily_WD40 repeat-like TMEM106C 79022 genome.wustl.edu 37 12 48359109 48359109 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001143842.1 +1 validated p.R78G 1.000 137 0% 197 41.1% 35 48.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF1356 MCRS1 10445 genome.wustl.edu 37 12 49952730 49952730 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001012300.1 -1 validated p.G413S 0.999 40 0% 55 41.8% 69 52.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA NCKAP5L 57701 genome.wustl.edu 37 12 50187163 50187163 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000433948 -1 known p.R819* 0.811 18 0% 13 30.8% 23 26% - - - NULL MIR1293 100302220 genome.wustl.edu 37 12 50627995 50627997 + RNA DEL TTT TTT - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 TTT TTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000408677 -1 known NULL 0.541 - - - - - - - - - - ZBTB39 9880 genome.wustl.edu 37 12 57398045 57398045 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014830.1 -1 provisional p.T219 0.000 46 0% 53 43.4% 0 - - - - NULL MBD6 114785 genome.wustl.edu 37 12 57920771 57920771 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_052897.3 +1 validated p.S615P 0.965 139 0% 104 19.2% 49 26.5% unknown(0) deleterious(0.02) - NULL NAV3 89795 genome.wustl.edu 37 12 78579429 78579429 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014903.4 +1 validated p.R1892H 1.000 233 0% 152 17.8% 0 - benign(0.001) tolerated(0.21) neutral(0.044) NULL TMCC3 57458 genome.wustl.edu 37 12 94975882 94975882 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020698.2 -1 validated p.H171N 1.000 25 0% 19 42.1% 0 - benign(0.005) tolerated(0.37) neutral(0.019) HMMPfam_Tmemb_cc2 CCDC53 51019 genome.wustl.edu 37 12 102455066 102455066 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_016053.2 -1 validated p.T37I 1.000 169 0% 272 40.1% 28 39.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF2360 CCDC63 160762 genome.wustl.edu 37 12 111311755 111311755 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_152591.1 +1 provisional p.R160H 0.438 96 1% 151 42.4% 0 - benign(0.064) tolerated(0.12) neutral(0.265) NULL OAS2 4939 genome.wustl.edu 37 12 113440758 113440758 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_016817.2 +1 reviewed p.P344T 0.225 113 0.9% 58 27.6% 3 33.3% possibly_damaging(0.802) deleterious(0) deleterious(0.746) superfamily_Nucleotidyltransferase MED13L 23389 genome.wustl.edu 37 12 116408546 116408546 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015335.3 -1 validated p.R1974* 1.000 69 0% 44 34.1% 1 100% - - - NULL PUS1 80324 genome.wustl.edu 37 12 132426095 132426095 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_025215.5 +1 reviewed p.C268Y 1.000 41 0% 31 32.3% 53 45.2% possibly_damaging(0.911) deleterious(0) deleterious(0.807) HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase SACS 26278 genome.wustl.edu 37 13 23929962 23929962 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000455470 -1 known p.R163W 0.012 163 0% 228 47.4% 1 0% - - - superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase MTUS2 23281 genome.wustl.edu 37 13 30062109 30062109 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001033602.2 +1 validated p.I1168V 0.412 28 0% 34 47.1% 0 - benign(0) tolerated(0.46) neutral(0.012) NULL SLITRK6 84189 genome.wustl.edu 37 13 86368978 86368978 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_032229.2 -1 validated p.E556K 0.979 165 0% 149 42.3% 0 - benign(0.003) tolerated(0.14) neutral(0.249) HMMSmart_SM00082,superfamily_L domain-like LOC643677 643677 genome.wustl.edu 37 13 103398758 103398758 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e XM_002344085.1 -1 model p.A1359V 0.000 164 0.6% 136 52.2% 0 - - - - NULL MYO16 23026 genome.wustl.edu 37 13 109496759 109496759 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015011.1 +1 validated p.A367V 0.857 106 0% 70 38.6% 0 - benign(0.386) tolerated(0.07) neutral(0.443) superfamily_P-loop containing nucleoside triphosphate hydrolases CUL4A 8451 genome.wustl.edu 37 13 113891192 113891192 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001008895.1 +1 validated p.I302V 1.000 201 0% 410 43.9% 7 57.1% benign(0.001) tolerated(0.1) neutral(0.286) HMMPfam_Cullin,superfamily_Cullin repeat POTEG 404785 genome.wustl.edu 37 14 19553610 19553610 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001005356.2 +1 validated p.C65F 0.029 94 0% 113 8.8% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL POTEG 404785 genome.wustl.edu 37 14 19571395 19571395 + Nonsense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001005356.2 +1 validated p.G392* 0.000 736 0% 824 11.8% 0 - - - - NULL POTEM 641455 genome.wustl.edu 37 14 20020027 20020027 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001145442.1 -1 provisional p.C65F 0.040 94 0% 75 9.3% 0 - unknown(0) deleterious(0) - NULL TTC5 91875 genome.wustl.edu 37 14 20768861 20768861 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_138376.2 -1 validated p.E101K 0.966 48 0% 38 36.8% 5 60% benign(0) tolerated(0.78) neutral(0.001) superfamily_SSF48452 NOVA1 4857 genome.wustl.edu 37 14 27064736 27064736 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002515.2 -1 reviewed p.V54I 1.000 209 0% 252 42.1% 0 - unknown(0) tolerated(0.85) - HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) TRMT5 57570 genome.wustl.edu 37 14 61445998 61445998 + Silent SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020810.2 -1 validated p.I206 0.960 129 0% 254 47.2% 7 42.8% - - - HMMPfam_Met_10,superfamily_SSF53335 PSMC1 5700 genome.wustl.edu 37 14 90734747 90734747 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002802.2 +1 reviewed p.G291W 1.000 97 0% 117 29.9% 82 23.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases SERPINA1 5265 genome.wustl.edu 37 14 94849388 94849388 + Missense_Mutation SNP G G A rs28931570 byCluster;byFrequency;by1000genomes TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000295.4 -1 reviewed p.R63C 0.974 84 0% 88 53.4% 114 34.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins MIR409 574413 genome.wustl.edu 37 14 101531680 101531680 + RNA SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000362237 +1 known NULL 1.000 31 0% 30 36.7% 0 - - - - - ACTC1 70 genome.wustl.edu 37 15 35085610 35085610 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005159.4 -1 reviewed p.R97H 1.000 41 2.4% 35 34.3% 0 - benign(0.166) - - HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain SHF 90525 genome.wustl.edu 37 15 45490991 45490991 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_138356.2 -1 validated p.R94 0.000 48 0% 46 50% 1 0% - - - NULL DMXL2 23312 genome.wustl.edu 37 15 51792189 51792189 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015263.3 -1 validated p.Y1078H 1.000 125 0% 284 29.2% 0 - benign(0.067) tolerated(0.53) neutral(0.012) NULL IGDCC3 9543 genome.wustl.edu 37 15 65622724 65622724 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004884.3 -1 validated p.V589M 1.000 24 0% 20 50% 0 - probably_damaging(0.995) tolerated(0.05) deleterious(0.803) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III TBC1D21 161514 genome.wustl.edu 37 15 74177418 74177418 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_153356.1 +1 provisional p.L185F 1.000 30 0% 38 42.1% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_TBC,superfamily_RabGAP_TBC CLK3 1198 genome.wustl.edu 37 15 74922131 74922131 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001130028.1 +1 reviewed p.R608 1.000 25 0% 24 58.3% 81 49.3% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SNUPN 10073 genome.wustl.edu 37 15 75909889 75909889 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001042581.1 -1 reviewed p.R55W 1.000 343 0% 546 40.7% 9 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SH2D7 646892 genome.wustl.edu 37 15 78393428 78393428 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001101404.1 +1 provisional p.R278K 0.139 18 0% 17 52.9% 0 - benign(0) tolerated(0.51) neutral(0.009) NULL SLCO3A1 28232 genome.wustl.edu 37 15 92638148 92638148 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_013272.3 +1 validated p.C228 0.991 254 0% 371 41.2% 0 - - - - HMMPfam_OATP,superfamily_MFS general substrate transporter ITFG3 83986 genome.wustl.edu 37 16 313266 313266 + Nonsense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000424016 +1 known p.E18* 0.675 7 0.000 13 0.462 51 47% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MSLNL 401827 genome.wustl.edu 37 16 830748 830767 + Frame_Shift_Del DEL GTGTGCACGGGTAGGTGACG GTGTGCACGGGTAGGTGACG - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 GTGTGCACGGGTAGGTGACG GTGTGCACGGGTAGGTGACG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001025190.1 -1 provisional p.V79fs 0.379:0.375:0.374:0.201:0.160:0.068:0.036:0.007:0.004:0.001:0.001:0.000:0.001:0.003:0.009:0.010:0.010:0.006:0.004:0.006 - - - - - - - - - NULL CREBBP 1387 genome.wustl.edu 37 16 3777856 3777856 + Nonsense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004380.2 -1 reviewed p.G2398* 1.000 42 0% 35 25.7% 31 35.4% - - - NULL LOC342346 342346 genome.wustl.edu 37 16 4643237 4643237 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001145011.1 +1 predicted p.T929 0.984 8 0.000 12 0.417 0 - - - - NULL ABCC6 368 genome.wustl.edu 37 16 16308268 16308268 + Nonsense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001171.5 -1 reviewed p.Y171* 0.969 31 0% 42 28.6% 0 - - - - NULL ABCC6P1 653190 genome.wustl.edu 37 16 18591553 18591553 + RNA SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NR_003569.1 +1 provisional NULL 0.906 33 0% 37 29.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) - ACSM3 6296 genome.wustl.edu 37 16 20797562 20797562 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_202000.2 +1 validated p.S436P 0.001 167 0% 177 42.9% 5 40% unknown(0) - - NULL IGSF6 10261 genome.wustl.edu 37 16 21658498 21658498 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_005849.2 -1 validated p.A128V 0.006 39 0% 54 42.6% 11 0% benign(0.039) deleterious(0.04) neutral(0.351) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 PRKCB 5579 genome.wustl.edu 37 16 23999887 23999887 + Silent SNP C C T rs115750906 by1000genomes TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002738.6 +1 reviewed p.G88 0.046 130 0% 117 41% 0 - - - - HMMPfam_C1_1,superfamily_Cysteine-rich domain GSG1L 146395 genome.wustl.edu 37 16 27974490 27974490 + Silent SNP C C T rs189933895 by1000genomes TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001109763.1 -1 validated p.P128 0.789 54 0% 55 50.9% 0 - - - - HMMPfam_GSG-1 CTCF 10664 genome.wustl.edu 37 16 67654643 67654643 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006565.2 +1 reviewed p.R377H 1.000 38 0% 62 51.6% 11 54.5% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_C2H2 and C2HC zinc fingers DHODH 1723 genome.wustl.edu 37 16 72057419 72057419 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001361.3 +1 reviewed p.D340 0.943 22 0% 23 21.7% 13 7.6% - - - PatternScan_DHODEHASE_2,HMMPfam_DHO_dh,superfamily_SSF51395 PSMD7 5713 genome.wustl.edu 37 16 74334017 74334017 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002811.3 +1 reviewed p.G27S 1.000 152 0% 174 50% 22 31.8% benign(0) tolerated(0.14) neutral(0.249) HMMPfam_Mov34,HMMSmart_JAB_MPN CNTNAP4 85445 genome.wustl.edu 37 16 76486506 76486506 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_138994.3 +1 validated p.E318D 0.006 179 0% 219 50.2% 0 - benign(0.013) tolerated(0.52) neutral(0.009) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases VAT1L 57687 genome.wustl.edu 37 16 78011494 78011494 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020927.1 +1 provisional p.M388V 1.000 80 0% 105 34.3% 0 - benign(0.407) tolerated(1) neutral(0.132) NULL FANCA 2175 genome.wustl.edu 37 16 89809342 89809342 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000135.2 -1 reviewed p.L1211I 0.945 72 0% 60 35% 9 11.1% possibly_damaging(0.49) tolerated(0.19) neutral(0.213) NULL KIAA0664 23277 genome.wustl.edu 37 17 2598369 2598369 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015229.3 -1 validated p.A839 0.106 21 0% 19 47.4% 11 36.3% - - - NULL KRBA2 124751 genome.wustl.edu 37 17 8274834 8274834 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_213597.2 -1 provisional p.P7S 0.009 71 0% 96 31.2% 0 - unknown(0) - - NULL USP43 124739 genome.wustl.edu 37 17 9603566 9603566 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_153210.3 +1 validated p.R512H 0.975 60 0% 52 40.4% 3 0% probably_damaging(0.997) tolerated(0.55) deleterious(0.473) HMMPfam_UCH,superfamily_SSF54001 LOC100287863 100287863 genome.wustl.edu 37 17 37331704 37331704 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e XM_002343513.1 +1 model p.P6L 0.998 33 0% 17 58.8% 4 0% - - - NULL GAST 2520 genome.wustl.edu 37 17 39871803 39871803 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000805.3 +1 reviewed p.N39D 0.008 19 0% 18 38.9% 0 - benign(0.224) deleterious(0) neutral(0.467) HMMPfam_Gastrin WNK4 65266 genome.wustl.edu 37 17 40936018 40936018 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_032387.4 +1 reviewed p.L285 0.144 25 0% 29 37.9% 4 50% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ACSF2 80221 genome.wustl.edu 37 17 48551137 48551138 + Frame_Shift_Ins INS - - CA novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_025149.4 +1 validated p.P532fs 1.000:1.000 - - - - - - - - - HMMPfam_AMP-binding,superfamily_SSF56801 ACSF2 80221 genome.wustl.edu 37 17 48551331 48551331 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_025149.4 +1 validated p.T565M 0.955 68 0% 91 35.2% 37 18.9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF56801 MTMR4 9110 genome.wustl.edu 37 17 56572372 56572372 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004687.4 -1 validated p.R1044H 1.000 90 0% 76 10.5% 8 0% probably_damaging(0.999) tolerated(0.59) deleterious(0.495) NULL SYNGR2 9144 genome.wustl.edu 37 17 76166923 76166923 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004710.3 +1 reviewed p.C42Y 1.000 14 0% 14 28.6% 85 15.2% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) HMMPfam_MARVEL EPR1 8475 genome.wustl.edu 37 17 76219856 76219857 + RNA DEL TC TC - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NR_002219.1 -1 provisional NULL 0.000:0.001 - - - - - - - - - - FOXK2 3607 genome.wustl.edu 37 17 80526021 80526021 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_004514.3 +1 reviewed p.A236T 0.987 43 2.3% 55 45.5% 1 0% benign(0.007) tolerated(0.21) neutral(0.044) NULL ANKRD12 23253 genome.wustl.edu 37 18 9256590 9256590 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015208.3 +1 validated p.R1109W 0.996 104 1% 230 40.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Ankyrin repeat PTPN2 5771 genome.wustl.edu 37 18 12830961 12830961 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002828.2 -1 reviewed p.R114H 1.000 90 0% 121 47.9% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II FAM59A 64762 genome.wustl.edu 37 18 29890219 29890219 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_022751.1 -1 provisional p.E110D 1.000 200 0% 209 46.9% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL SMAD2 4087 genome.wustl.edu 37 18 45391500 45391501 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001003652.2 -1 reviewed p.P221fs 0.891:1.000 - - - - - - - - - superfamily_SMAD/FHA domain SAFB 6294 genome.wustl.edu 37 19 5654396 5654396 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002967.2 +1 reviewed p.R562W 1.000 154 0% 180 41.1% 55 60% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_SSF54928 DENND1C 79958 genome.wustl.edu 37 19 6475306 6475306 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_024898.2 -1 validated p.R344 0.938 8 0.000 9 0.444 6 0% - - - HMMPfam_dDENN,HMMSmart_dDENN NANOS3 342977 genome.wustl.edu 37 19 13988362 13988362 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001098622.1 +1 provisional p.G100 1.000 6 0.000 16 0.312 0 - - - - HMMPfam_zf-nanos CHERP 10523 genome.wustl.edu 37 19 16631278 16631278 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006387.5 -1 validated p.R748C 0.996 50 0% 43 23.3% 41 46.3% unknown(0) deleterious(0.02) - NULL PLVAP 83483 genome.wustl.edu 37 19 17476280 17476280 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_031310.1 -1 provisional p.R332W 0.062 26 0% 29 41.4% 8 0% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_PV-1 MAP1S 55201 genome.wustl.edu 37 19 17836983 17836983 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_018174.4 +1 validated p.L264 1.000 14 0% 19 31.6% 11 27.2% - - - NULL TSHZ3 57616 genome.wustl.edu 37 19 31768350 31768350 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020856.2 -1 validated p.H783 0.606 95 0% 71 53.5% 0 - - - - NULL DMKN 93099 genome.wustl.edu 37 19 35990910 35990910 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_033317.3 -1 reviewed p.A437T 0.015 88 0% 71 53.5% 186 39.7% possibly_damaging(0.888) deleterious(0.04) deleterious(0.696) NULL KIRREL2 84063 genome.wustl.edu 37 19 36349434 36349434 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_199180.2 +1 validated p.S112 0.010 20 0% 21 28.6% 0 - - - - HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin WDR87 83889 genome.wustl.edu 37 19 38376398 38376398 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_031951.3 -1 provisional p.L2599P 0.012 181 0% 180 34.4% 0 - unknown(0) - - NULL ZNF234 10780 genome.wustl.edu 37 19 44661109 44661109 + Frame_Shift_Del DEL A A - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001144824.1 +1 validated p.K314fs 1.000 - - - - - - - - - superfamily_C2H2 and C2HC zinc fingers CCDC9 26093 genome.wustl.edu 37 19 47761875 47761875 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_015603.2 +1 validated p.I21 0.986 45 0% 38 36.8% 14 57.1% - - - NULL HRC 3270 genome.wustl.edu 37 19 49657958 49657958 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_002152.2 -1 reviewed p.R179 0.925 56 0% 52 38.5% 0 - - - - NULL VSIG10L 147645 genome.wustl.edu 37 19 51840497 51840497 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000335624 -1 known p.R322L 0.139 26 0% 21 42.9% 1 0% possibly_damaging(0.656) deleterious(0) deleterious(0.675) NULL KIR3DL1 3811 genome.wustl.edu 37 19 55329012 55329012 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_013289.2 +1 reviewed p.G20S 0.001 219 0% 245 36.7% 0 - benign(0.013) tolerated(0.94) neutral(0.001) NULL NLRP8 126205 genome.wustl.edu 37 19 56466271 56466271 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_176811.2 +1 provisional p.L283 0.402 82 0% 65 41.5% 0 - - - - HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF667 63934 genome.wustl.edu 37 19 56953573 56953576 + Frame_Shift_Del DEL TGAT TGAT - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 TGAT TGAT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_022103.3 -1 validated p.N263fs 0.000:0.001:0.002:0.023 - - - - - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF460 10794 genome.wustl.edu 37 19 57802927 57802927 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006635.3 +1 validated p.E340Q 0.007 93 0% 65 52.3% 0 - possibly_damaging(0.644) tolerated(0.06) deleterious(0.548) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 RASSF2 9770 genome.wustl.edu 37 20 4771179 4771179 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014737.2 -1 reviewed p.R152H 1.000 34 0% 31 35.5% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL PROKR2 128674 genome.wustl.edu 37 20 5282794 5282794 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_144773.2 -1 reviewed p.L349 1.000 64 0% 68 42.6% 0 - - - - superfamily_SSF81321 SNX5 27131 genome.wustl.edu 37 20 17933345 17933345 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014426.2 -1 reviewed p.L133 0.021 105 0% 159 35.8% 18 33.3% - - - HMMPfam_PX,superfamily_PX domain PAX1 5075 genome.wustl.edu 37 20 21687685 21687685 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006192.3 +1 validated p.R299Q 1.000 10 0.000 7 0.714 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FOXA2 3170 genome.wustl.edu 37 20 22562838 22562839 + Frame_Shift_Del DEL GC GC - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 GC GC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_021784.4 -1 reviewed p.Q348fs 1.000:1.000 - - - - - - - - - NULL ZNF341 84905 genome.wustl.edu 37 20 32376706 32376706 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_032819.3 +1 validated p.A623 0.002 85 0% 80 43.8% 4 0% unknown(0) tolerated(0.19) - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 TOP1 7150 genome.wustl.edu 37 20 39744081 39744081 + Splice_Site SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003286.2 +1 reviewed e16+2 1.000 112 0% 170 32.4% 4 100% - - - - PTPRT 11122 genome.wustl.edu 37 20 40730844 40730844 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_133170.3 -1 reviewed p.L1231 1.000 28 0% 23 34.8% 0 - - - - HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II ARFGEF2 10564 genome.wustl.edu 37 20 47607655 47607655 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_006420.2 +1 reviewed p.Q965* 1.000 117 0% 116 31.9% 2 0% - - - superfamily_ARM-type_fold UBE2V1 7335 genome.wustl.edu 37 20 48700776 48700776 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_021988.4 -1 reviewed p.R86* 1.000 114 0% 294 35% 31 6.4% - - - HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like LSM14B 149986 genome.wustl.edu 37 20 60705594 60705594 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_144703.2 +1 validated p.R228* 1.000 83 0% 150 42.7% 7 14.2% - - - NULL TTC3 7267 genome.wustl.edu 37 21 38539917 38539917 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001001894.1 +1 validated p.R1488* 0.002 158 0% 282 39.4% 19 21% - - - superfamily_Spectrin,superfamily_SSF48452 ZNF295-AS1 150142 genome.wustl.edu 37 21 43444598 43444598 + RNA SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NR_027273.1 +1 validated NULL 0.000 137 0% 106 43.4% 11 54.5% - - - - PCBP3 54039 genome.wustl.edu 37 21 47330911 47330911 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_020528.2 +1 reviewed p.Q189H 1.000 20 0% 19 26.3% 0 - benign(0.009) tolerated(0.54) neutral(0.008) HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) TRMT2A 27037 genome.wustl.edu 37 22 20100339 20100339 + Silent SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000404751 -1 known p.D549 0.000 11 0% 14 35.7% 4 25% - - - superfamily_SSF53335 ZNF74 7625 genome.wustl.edu 37 22 20748844 20748844 + RNA SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NR_003253.1 +1 validated NULL 0.001 16 0% 11 45.5% 0 - - - - - TTC28 23331 genome.wustl.edu 37 22 28501515 28501515 + Missense_Mutation SNP T T A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001145418.1 -1 validated p.H1020L 1.000 44 0% 44 43.2% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452 LIMK2 3985 genome.wustl.edu 37 22 31661961 31661961 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001031801.1 +1 reviewed p.G274D 1.000 68 0% 45 31.1% 14 35.7% probably_damaging(0.999) tolerated(0.2) deleterious(0.539) NULL PPARA 5465 genome.wustl.edu 37 22 46614297 46614297 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001001928.2 +1 reviewed p.N169 0.325 76 0% 94 36.2% 0 - - - - HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain) ALG12 79087 genome.wustl.edu 37 22 50303562 50303562 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_024105.3 -1 reviewed p.P215L 0.993 41 0% 70 14.3% 21 0% benign(0.008) tolerated(0.07) neutral(0.319) HMMPfam_Glyco_transf_22 P2RY8 286530 genome.wustl.edu 37 X 1585023 1585023 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_178129.4 -1 reviewed p.A143 0.926 19 0% 20 40% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 DCAF8L2 347442 genome.wustl.edu 37 X 27765641 27765641 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001136533.1 +1 provisional p.G210V 1.000 35 0% 37 51.4% 0 - - - - superfamily_WD40 repeat-like OTUD5 55593 genome.wustl.edu 37 X 48780481 48780481 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_017602.3 -1 reviewed p.V562 1.000 127 0% 130 30% 70 0% - - - NULL RAB41 347517 genome.wustl.edu 37 X 69503807 69503807 + Missense_Mutation SNP A A G novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001032726.2 +1 reviewed p.T155A 1.000 176 0% 220 40.9% 2 0% benign(0.009) deleterious(0.03) neutral(0.365) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases GDPD2 54857 genome.wustl.edu 37 X 69646793 69646793 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_017711.3 +1 reviewed p.P212S 0.977 158 0% 151 39.7% 0 - benign(0.138) deleterious(0) neutral(0.456) NULL ARMCX2 9823 genome.wustl.edu 37 X 100911753 100911753 + Silent SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_014782.5 -1 reviewed p.A274 0.000 79 0% 93 58.1% 13 100% - - - NULL TMEM31 203562 genome.wustl.edu 37 X 102968606 102968606 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_182541.2 +1 validated p.S63P 0.916 152 0% 177 39.5% 2 0% benign(0.418) - - NULL ATG4A 115201 genome.wustl.edu 37 X 107377297 107377297 + Missense_Mutation SNP G G C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_052936.2 +1 reviewed p.W101C 1.000 209 0% 330 37.3% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C54 IRS4 8471 genome.wustl.edu 37 X 107976184 107976184 + Missense_Mutation SNP T T C novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_003604.2 -1 reviewed p.S1131G 0.105 17 0% 14 28.6% 0 - benign(0.001) deleterious(0.05) neutral(0.345) NULL LONRF3 79836 genome.wustl.edu 37 X 118151556 118151556 + Missense_Mutation SNP G G T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001031855.1 +1 reviewed p.S728I 0.999 57 0% 69 40.6% 2 0% possibly_damaging(0.9) tolerated(0.12) deleterious(0.617) HMMPfam_LON,HMMSmart_SM00464 AKAP14 158798 genome.wustl.edu 37 X 119048729 119048729 + Missense_Mutation SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_178813.5 +1 reviewed p.S110N 0.000 139 0% 222 31.1% 27 100% possibly_damaging(0.873) tolerated(0.23) neutral(0.381) NULL SPANXN3 139067 genome.wustl.edu 37 X 142596893 142596893 + Missense_Mutation SNP C C A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001009609.2 -1 validated p.K59N 0.000 304 0% 402 36.6% 0 - probably_damaging(0.975) deleterious(0.01) deleterious(0.823) HMMPfam_SPAN-X IDS 3423 genome.wustl.edu 37 X 148571916 148571916 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_000202.5 -1 reviewed p.G312D 0.997 71 0% 63 11.1% 17 5.8% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like PASD1 139135 genome.wustl.edu 37 X 150817142 150817144 + In_Frame_Del DEL GCT GCT - novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 GCT GCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_173493.2 +1 reviewed p.A232in_frame_del 0.000:0.000:0.000 - - - - - - - - - NULL ATP2B3 492 genome.wustl.edu 37 X 152835148 152835148 + Splice_Site SNP G G A novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e ENST00000496610 +1 known NULL 1.000 199 0% 167 40.1% 0 - - - - - CLIC2 1193 genome.wustl.edu 37 X 154507295 154507295 + Missense_Mutation SNP C C T novel TCGA-AP-A0LP-01A-12D-A10B-09 TCGA-AP-A0LP-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b48069ca-a19d-461b-9a59-385f14886aac cdd0300f-b8e6-4804-92aa-7628fa6fb31e NM_001289.4 -1 reviewed p.R214H 1.000 146 0% 187 29.9% 4 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Glutathione S-transferase (GST) C-terminal domain