Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain SGIP1 84251 genome.wustl.edu 37 1 67206363 67206363 + Missense_Mutation SNP T T A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_032291.2 +1 validated p.L753M 1.000 25 0% 48 22.9% 1 0% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) NULL ST6GALNAC3 256435 genome.wustl.edu 37 1 76877834 76877834 + Missense_Mutation SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_152996.2 +1 validated p.V119I 1.000 313 0% 429 35% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_transf_29 SETDB1 9869 genome.wustl.edu 37 1 150936496 150936496 + Missense_Mutation SNP T T G novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001145415.1 +1 reviewed p.V1232G 1.000 120 0% 148 43.2% 52 63.4% probably_damaging(0.995) deleterious(0.05) deleterious(0.803) HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain GABPB2 126626 genome.wustl.edu 37 1 151090500 151090500 + Missense_Mutation SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_144618.2 +1 validated p.R372Q 1.000 110 0% 123 41.5% 2 0% possibly_damaging(0.949) deleterious(0) deleterious(0.838) NULL LAMC1 3915 genome.wustl.edu 37 1 183111747 183111747 + Missense_Mutation SNP T T C novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_002293.3 +1 reviewed p.V1551A 0.997 201 0% 180 41.7% 57 42.1% benign(0) tolerated(0.77) neutral(0.001) NULL ATP2B4 493 genome.wustl.edu 37 1 203691729 203691729 + Missense_Mutation SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001684.3 +1 reviewed p.R979Q 1.000 478 0.2% 501 41.5% 6 83.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M IARS2 55699 genome.wustl.edu 37 1 220279397 220279397 + Frame_Shift_Del DEL C C - novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_018060.3 +1 validated p.M412fs 0.930 - - - - - - - - - HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase SULT1C3 442038 genome.wustl.edu 37 2 108875465 108875486 + Frame_Shift_Del DEL AAACTTGGTCAGGTGATGTTAT AAACTTGGTCAGGTGATGTTAT - rs72322214 byCluster TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 AAACTTGGTCAGGTGATGTTAT AAACTTGGTCAGGTGATGTTAT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 ENST00000376700 +1 known p.W224fs 0.420:0.382:0.018:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.002:0.395:0.396:0.268:0.312:0.255:0.004:0.004:0.004:0.002:0.004:0.025 - - - - - - - - - HMMPfam_Sulfotransfer_1,superfamily_SSF52540 CNTNAP5 129684 genome.wustl.edu 37 2 124999812 124999812 + Missense_Mutation SNP C C A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_130773.2 +1 reviewed p.Q75K 0.368 46 0% 52 34.6% 0 - benign(0.016) tolerated(0.12) neutral(0.261) HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like LCT 3938 genome.wustl.edu 37 2 136562373 136562373 + Silent SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_002299.2 -1 reviewed p.L1476 0.998 95 0% 74 37.8% 0 - - - - HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat PRKRA 8575 genome.wustl.edu 37 2 179306376 179306376 + Silent SNP G G C novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_003690.4 -1 reviewed p.A190 0.997 76 0% 133 31.6% 13 38.4% - - - HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like CTNNB1 1499 genome.wustl.edu 37 3 41266101 41266101 + Missense_Mutation SNP C C A rs121913400 byCluster TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001098209.1 +1 reviewed p.S33Y 1.000 65 1.5% 75 40% 54 53.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LIMD1 8994 genome.wustl.edu 37 3 45637446 45637446 + Missense_Mutation SNP G G T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_014240.2 +1 validated p.G359C 0.025 42 0% 46 34.8% 1 100% benign(0.018) deleterious(0.01) neutral(0.406) NULL USP19 10869 genome.wustl.edu 37 3 49148196 49148196 + Missense_Mutation SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_006677.1 -1 provisional p.R1113C 1.000 102 0% 77 29.9% 30 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UCH,superfamily_Cysteine proteinases MYH15 22989 genome.wustl.edu 37 3 108205290 108205290 + Missense_Mutation SNP C C G novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_014981.1 -1 validated p.E339Q 0.690 209 0% 286 34.6% 0 - benign(0.258) deleterious(0.02) neutral(0.410) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases PIK3CA 5290 genome.wustl.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 byCluster TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_006218.2 +1 reviewed p.E545K 1.000 56 0% 112 40.2% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold DMP1 1758 genome.wustl.edu 37 4 88583803 88583803 + Silent SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_004407.3 +1 reviewed p.V291 0.000 188 0% 224 40.6% 0 - - - - HMMPfam_DMP1 NPR3 4883 genome.wustl.edu 37 5 32780847 32780847 + Silent SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_000908.2 +1 validated p.S405 1.000 109 0% 106 34.9% 0 - - - - HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I NIPBL 25836 genome.wustl.edu 37 5 37022151 37022171 + Splice_Site DEL AATGTTTGCTTGGCAGATCCT AATGTTTGCTTGGCAGATCCT - novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 AATGTTTGCTTGGCAGATCCT AATGTTTGCTTGGCAGATCCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_133433.3 +1 reviewed e27-1 1.000:1.000:1.000:1.000:0.999:1.000:1.000 - - - - - - - - - - ZNF366 167465 genome.wustl.edu 37 5 71756624 71756624 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_152625.1 -1 provisional p.V234M 1.000 146 0% 110 39.1% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL PCDHB7 56129 genome.wustl.edu 37 5 140554386 140554386 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_018940.2 +1 reviewed p.T657M 0.593 66 0% 57 33.3% 15 0% possibly_damaging(0.811) tolerated(0.17) neutral(0.364) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PGM3 5238 genome.wustl.edu 37 6 83892650 83892650 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_015599.1 -1 provisional p.R169* 0.978 123 0% 214 12.1% 6 0% - - - superfamily_Phosphoglucomutase first 3 domains ZNF292 23036 genome.wustl.edu 37 6 87967133 87967133 + Missense_Mutation SNP C C A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_015021.1 +1 validated p.F1262L 1.000 100 0% 125 11.2% 3 0% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) NULL IL22RA2 116379 genome.wustl.edu 37 6 137476207 137476207 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_052962.2 -1 reviewed p.E115K 0.003 279 0% 411 35.3% 0 - possibly_damaging(0.829) tolerated(0.8) neutral(0.315) superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind TBRG4 9238 genome.wustl.edu 37 7 45142001 45142001 + Frame_Shift_Del DEL T T - novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_004749.2 -1 validated p.R423fs 0.001 - - - - - - - - - HMMPfam_FAST_1 PTPRD 5789 genome.wustl.edu 37 9 8331643 8331643 + Missense_Mutation SNP C C G novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_002839.3 -1 reviewed p.G1825R 1.000 229 0.4% 310 30.3% 1 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II QRFP 347148 genome.wustl.edu 37 9 133769001 133769001 + Silent SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_198180.1 -1 validated p.Q75 0.724 47 0% 31 12.9% 0 - - - - NULL RAPGEF1 2889 genome.wustl.edu 37 9 134467551 134467551 + Silent SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 ENST00000414781 -1 known p.G145S 1.000 88 0% 60 33.3% 9 11.1% - - - HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF BRD3 8019 genome.wustl.edu 37 9 136901309 136901309 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_007371.3 -1 reviewed p.R594Q 1.000 48 0% 38 44.7% 13 53.8% possibly_damaging(0.627) deleterious(0.01) deleterious(0.624) NULL ANK3 288 genome.wustl.edu 37 10 61835222 61835222 + Nonsense_Mutation SNP G G T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_020987.2 -1 reviewed p.S1806* 1.000 305 0% 495 53.1% 0 - - - - NULL PTEN 5728 genome.wustl.edu 37 10 89624237 89624240 + Frame_Shift_Del DEL TCAT TCAT - novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 TCAT TCAT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 ENST00000371953 +1 known p.I4fs 1.000:1.000:1.000:1.000 - - - - - - - - - NULL PTEN 5728 genome.wustl.edu 37 10 89692889 89692915 + In_Frame_Del DEL AAAGCTGGAAAGGGACGAACTGGTGTA AAAGCTGGAAAGGGACGAACTGGTGTA - novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 AAAGCTGGAAAGGGACGAACTGGTGTA AAAGCTGGAAAGGGACGAACTGGTGTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 ENST00000371953 +1 known p.KAGKGRTGV125in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000 - - - - - - - - - HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II OR5I1 10798 genome.wustl.edu 37 11 55703430 55703430 + Silent SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_006637.1 -1 reviewed p.L149 0.001 200 0% 264 34.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 CACNA1C 775 genome.wustl.edu 37 12 2788637 2788637 + Missense_Mutation SNP G G A rs147896322 by1000genomes TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_199460.2 +1 reviewed p.V1755I 1.000 23 0% 22 27.3% 2 0% benign(0.366) tolerated(0.29) neutral(0.146) NULL CHD4 1108 genome.wustl.edu 37 12 6686952 6686952 + Missense_Mutation SNP T T C novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001273.2 -1 reviewed p.K1787R 1.000 179 0% 208 43.8% 107 49.5% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_CHDCT2 H3F3C 440093 genome.wustl.edu 37 12 31944998 31944998 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001013699.2 -1 validated p.G35R 0.999 116 0% 105 42.9% 0 - possibly_damaging(0.764) - - HMMSmart_H3,superfamily_Histone-fold MTUS2 23281 genome.wustl.edu 37 13 29599207 29599207 + Silent SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001033602.2 +1 validated p.T134 0.000 284 0% 299 33.1% 0 - - - - NULL DACT1 51339 genome.wustl.edu 37 14 59113045 59113045 + Missense_Mutation SNP G G T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_016651.5 +1 validated p.R568S 0.003 53 0% 77 46.8% 4 25% possibly_damaging(0.689) deleterious(0.04) deleterious(0.595) NULL PAPLN 89932 genome.wustl.edu 37 14 73719926 73719926 + Nonsense_Mutation SNP T T A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 ENST00000216658 +1 known p.C384* 0.025 23 0% 22 50% 1 0% - - - superfamily_TSP1 RYR3 6263 genome.wustl.edu 37 15 34042429 34042429 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001036.3 +1 validated p.R2781W 1.000 84 0% 90 35.6% 0 - probably_damaging(0.985) - - HMMPfam_RyR FAM96A 84191 genome.wustl.edu 37 15 64385872 64385896 + Frame_Shift_Del DEL GATCCGGGGCTGCCGGGCAGCTCCC GATCCGGGGCTGCCGGGCAGCTCCC - novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 GATCCGGGGCTGCCGGGCAGCTCCC GATCCGGGGCTGCCGGGCAGCTCCC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_032231.4 -1 validated p.G25fs 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.966:0.862 - - - - - - - - - NULL OR1F1 4992 genome.wustl.edu 37 16 3255097 3255097 + Missense_Mutation SNP T T A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_012360.1 +1 provisional p.M284K 1.000 160 0% 165 38.8% 1 100% benign(0.229) deleterious(0) neutral(0.468) HMMPfam_7tm_1,superfamily_SSF81321 WDR59 79726 genome.wustl.edu 37 16 74943479 74943479 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_030581.3 -1 validated p.R521Q 1.000 142 0% 188 41.5% 11 45.4% possibly_damaging(0.723) tolerated(0.2) neutral(0.311) NULL ZBTB4 57659 genome.wustl.edu 37 17 7365800 7365800 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001128833.1 -1 validated p.G834E 0.071 62 0% 40 40% 12 41.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TRPV2 51393 genome.wustl.edu 37 17 16332137 16332137 + Missense_Mutation SNP C C G novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_016113.3 +1 reviewed p.F476L 0.949 159 0% 137 36.5% 3 0% benign(0) tolerated(0.57) neutral(0.006) HMMPfam_Ion_trans ASXL3 80816 genome.wustl.edu 37 18 31314318 31314318 + Missense_Mutation SNP G G C novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_030632.1 +1 provisional p.E341Q 1.000 65 0% 141 37.6% 0 - possibly_damaging(0.871) deleterious(0.02) deleterious(0.722) NULL CDC37 11140 genome.wustl.edu 37 19 10504112 10504112 + Silent SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_007065.3 -1 reviewed p.A244 0.465 93 0% 85 32.9% 218 44.4% - - - HMMPfam_CDC37_M,superfamily_Hsp90 co-chaperone CDC37 ATRN 8455 genome.wustl.edu 37 20 3543024 3543024 + Missense_Mutation SNP C C G novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_139321.2 +1 reviewed p.H517D 1.000 277 0.4% 316 11.4% 5 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) superfamily_Galactose oxidase central domain RALGAPA2 57186 genome.wustl.edu 37 20 20610075 20610075 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_020343.2 -1 validated p.E389K 1.000 129 0% 170 36.5% 1 100% probably_damaging(0.978) tolerated(0.08) deleterious(0.720) NULL DSCAM 1826 genome.wustl.edu 37 21 41725648 41725648 + Silent SNP G G C novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001389.3 -1 validated p.S226 1.000 65 0% 61 37.7% 0 - - - - HMMPfam_I-set,superfamily_Immunoglobulin ABCG1 9619 genome.wustl.edu 37 21 43708177 43708177 + Missense_Mutation SNP G G C novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_004915.3 +1 reviewed p.L384F 0.001 300 0% 237 35% 7 14.2% benign(0) tolerated(0.7) neutral(0.002) NULL SEZ6L 23544 genome.wustl.edu 37 22 26736414 26736414 + Missense_Mutation SNP C C A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_021115.4 +1 validated p.S676R 1.000 510 0% 513 40.9% 4 50% benign(0.02) tolerated(0.61) neutral(0.005) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain DCAF8L1 139425 genome.wustl.edu 37 X 27998092 27998092 + Missense_Mutation SNP C C T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_001017930.1 -1 reviewed p.V454M 0.975 146 0% 171 47.4% 0 - possibly_damaging(0.704) tolerated(0.13) deleterious(0.506) HMMSmart_WD40,superfamily_WD40_like USP51 158880 genome.wustl.edu 37 X 55515340 55515340 + Silent SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_201286.3 -1 validated p.S11 0.015 21 0% 28 25% 0 - - - - NULL ARHGEF9 23229 genome.wustl.edu 37 X 62885817 62885817 + Missense_Mutation SNP G G T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_015185.2 -1 reviewed p.N335K 1.000 138 0% 111 44.1% 7 0% benign(0.023) tolerated(0.31) neutral(0.028) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 LPAR4 2846 genome.wustl.edu 37 X 78011376 78011376 + Missense_Mutation SNP A A G novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_005296.2 +1 reviewed p.E337G 1.000 316 0.3% 475 34.7% 0 - benign(0.318) tolerated(0.2) neutral(0.149) NULL GLUD2 2747 genome.wustl.edu 37 X 120183199 120183199 + Missense_Mutation SNP G G T novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_012084.3 +1 reviewed p.G554V 1.000 185 0% 228 27.6% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) superfamily_NAD(P)-bd HTATSF1 27336 genome.wustl.edu 37 X 135579893 135579893 + Missense_Mutation SNP G G A novel TCGA-AP-A0LN-01A-11W-A062-09 TCGA-AP-A0LN-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 72645e2a-e230-4e81-9137-325c4a2bb5a7 87ada321-4e5c-4aa8-8db1-16b1284bd7c3 NM_014500.4 +1 reviewed p.R17Q 1.000 54 0% 95 28.4% 22 0% possibly_damaging(0.902) tolerated(0.31) neutral(0.384) NULL