Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain WRAP73 49856 genome.wustl.edu 37 1 3548011 3548012 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000378322 -1 known p.A420fs 0.000:0.000 - - - - - - - - - NULL FAM131C 348487 genome.wustl.edu 37 1 16386038 16386039 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_182623.2 -1 validated p.E172fs 0.000:0.003 - - - - - - - - - NULL SH2D5 400745 genome.wustl.edu 37 1 21048354 21048355 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001103161.1 -1 validated p.R402fs 0.765:0.689 - - - - - - - - - NULL TXLNA 200081 genome.wustl.edu 37 1 32655840 32655841 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_175852.3 +1 validated p.R319fs 0.998:0.460 - - - - - - - - - HMMPfam_Taxilin MAP7D1 55700 genome.wustl.edu 37 1 36638080 36638081 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_018067.3 +1 provisional p.W160fs 0.993:1.000 - - - - - - - - - NULL CCDC76 54482 genome.wustl.edu 37 1 100614343 100614343 + Frame_Shift_Del DEL A A - novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_019083.2 +1 validated p.N472fs 0.900 - - - - - - - - - NULL PLEKHO1 51177 genome.wustl.edu 37 1 150123157 150123157 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_016274.4 +1 provisional p.R29Q 1.000 161 0% 217 51.6% - - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like KCNJ9 3765 genome.wustl.edu 37 1 160054409 160054410 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_004983.2 +1 reviewed p.S198fs 1.000:1.000 - - - - - - - - - HMMPfam_IRK,superfamily_Ig_E-set PAPPA2 60676 genome.wustl.edu 37 1 176738803 176738803 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020318.2 +1 validated p.V1462M 0.053 394 0% 506 67% - - benign(0.269) tolerated(0.1) neutral(0.315) superfamily_Complement control module/SCR domain IGFN1 91156 genome.wustl.edu 37 1 201163396 201163397 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000451870 +1 known p.E42fs 0.943:0.941 - - - - - - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228550377 228550378 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001098623.1 +1 reviewed p.C6256fs 0.000:0.000 - - - - - - - - - NULL IGKV2D-26 28884 genome.wustl.edu 37 2 90025210 90025210 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000390268 +1 known p.A20T 0.016 273 0% 287 37.6% - - benign(0.245) deleterious(0.04) neutral(0.374) NULL SH3RF3 344558 genome.wustl.edu 37 2 110259240 110259241 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000309415 +1 known p.S881fs 1.000:1.000 - - - - - - - - - HMMPfam_SH3_1,HMMSmart_SH3 XIRP2 129446 genome.wustl.edu 37 2 168100146 168100146 + Silent SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_152381.4 +1 validated p.S748 0.000 125 0% 284 43.3% - - - - - NULL CHN1 1123 genome.wustl.edu 37 2 175711764 175711765 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000295497 -1 known p.A33fs 1.000:1.000 - - - - - - - - - NULL AGPS 8540 genome.wustl.edu 37 2 178388497 178388498 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_003659.3 +1 reviewed p.A608fs 1.000:1.000 - - - - - - - - - HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain DIS3L2 129563 genome.wustl.edu 37 2 233198691 233198692 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_152383.4 +1 validated p.L719fs 0.010:0.066 - - - - - - - - - HMMPfam_RNB SETMAR 6419 genome.wustl.edu 37 3 4358262 4358263 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_006515.3 +1 validated p.L464fs 0.981:0.980 - - - - - - - - - NULL COLQ 8292 genome.wustl.edu 37 3 15497439 15497439 + Missense_Mutation SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_005677.3 -1 reviewed p.D388N 0.999 116 0% 68 38.2% - - probably_damaging(1) - - NULL HYAL2 8692 genome.wustl.edu 37 3 50357874 50357875 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_003773.4 -1 reviewed p.A16fs 0.447:0.870 - - - - - - - - - NULL CACNA2D2 9254 genome.wustl.edu 37 3 50415512 50415513 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001005505.1 -1 reviewed p.L469fs 0.995:0.140 - - - - - - - - - HMMPfam_VWA,superfamily_vWA-like STAB1 23166 genome.wustl.edu 37 3 52556807 52556808 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_015136.2 +1 reviewed p.L2255fs 1.000:0.870 - - - - - - - - - HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like ENSG00000222345 0 genome.wustl.edu 37 3 52725451 52725452 + RNA INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000410413 +1 novel NULL 1.000:1.000 - - - - - - - - - - NEK11 79858 genome.wustl.edu 37 3 130852772 130852772 + Missense_Mutation SNP C C G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_024800.4 +1 reviewed p.Q207E 1.000 236 0% 255 43.5% - - benign(0.065) tolerated(0.15) neutral(0.245) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PRR23A 729627 genome.wustl.edu 37 3 138724643 138724643 + Silent SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001134659.1 -1 validated p.Y156 0.000 45 0% 35 60% - - - - - HMMPfam_DUF2476 ATR 545 ucsc.edu 37 3 142243035 142243036 + Frame_Shift_Ins INS - A A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001184.3 -1 reviewed p.L1317fs 1.000:1.000 - - - - - - - - - superfamily_ARM repeat PIK3CA 5290 genome.wustl.edu 37 3 178922321 178922321 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_006218.2 +1 reviewed p.G364R 1.000 135 0% 183 39.3% - - possibly_damaging(0.608) tolerated(0.14) neutral(0.460) HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB HTT 3064 genome.wustl.edu 37 4 3184154 3184154 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002111.6 +1 reviewed p.R1608Q 0.998 266 0% 211 44.5% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ARM repeat CLNK 116449 genome.wustl.edu 37 4 10492221 10492222 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_052964.2 -1 validated p.E386fs 1.000:1.000 - - - - - - - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain ADAMTS12 81792 genome.wustl.edu 37 5 33637846 33637846 + Missense_Mutation SNP T T C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_030955.2 -1 reviewed p.K575R 1.000 205 0% 447 21.9% - - probably_damaging(0.995) tolerated(0.12) deleterious(0.718) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat PIK3R1 5295 genome.wustl.edu 37 5 67588951 67588951 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_181523.1 +1 reviewed p.R348* 1.000 111 0% 85 43.5% - - - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain DUSP1 1843 genome.wustl.edu 37 5 172195813 172195813 + Missense_Mutation SNP A A T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_004417.3 -1 reviewed p.S352R 1.000 146 0% 86 48.8% - - benign(0.229) deleterious(0.02) neutral(0.406) NULL CPEB4 80315 genome.wustl.edu 37 5 173383061 173383061 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_030627.2 +1 validated p.R704H 1.000 143 0% 164 51.8% - - possibly_damaging(0.926) tolerated(0.19) neutral(0.424) NULL RNF44 22838 genome.wustl.edu 37 5 175956294 175956295 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_014901.4 -1 reviewed p.L410fs 0.997:1.000 - - - - - - - - - HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 LMAN2 10960 genome.wustl.edu 37 5 176764221 176764222 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_006816.2 -1 reviewed p.W235fs 1.000:1.000 - - - - - - - - - HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl BTN3A3 10384 genome.wustl.edu 37 6 26452610 26452610 + Missense_Mutation SNP C C G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_006994.4 +1 validated p.L576V 0.006 300 0% 243 43.2% - - probably_damaging(0.984) tolerated(0.3) neutral(0.459) NULL HLA-DRB5 3127 genome.wustl.edu 37 6 32489731 32489731 + Silent SNP G G A rs41554620 byCluster;byFrequency;by1000genomes TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002125.3 -1 reviewed p.Y107 0.000 13 0% 16 43.8% - - - - - HMMPfam_MHC_II_beta,superfamily_MHC_I/II-like_Ag-recog XPO5 57510 genome.wustl.edu 37 6 43521203 43521204 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020750.2 -1 validated p.C493fs 1.000:1.000 - - - - - - - - - superfamily_ARM repeat LOC100128859 100128859 genome.wustl.edu 37 6 74079693 74079694 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df XM_001714576.1 +1 model p.I116fs 0.000:0.000 - - - - - - - - - NULL SENP6 26054 genome.wustl.edu 37 6 76344716 76344717 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000370014 +1 known p.K161fs 0.000:0.000 - - - - - - - - - NULL PNISR 25957 genome.wustl.edu 37 6 99850560 99850560 + Missense_Mutation SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_015491.1 -1 validated p.D395N 1.000 196 0.5% 230 37.4% - - benign(0.355) tolerated(0.29) neutral(0.142) NULL MICAL1 64780 genome.wustl.edu 37 6 109767583 109767584 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_022765.3 -1 validated p.P780fs 0.035:0.051 - - - - - - - - - NULL TRAF3IP2 10758 genome.wustl.edu 37 6 111901456 111901456 + Silent SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_147686.2 -1 reviewed p.D322 1.000 146 0% 170 24.7% - - - - - NULL ENSG00000232131 0 genome.wustl.edu 37 6 126139954 126139955 + Splice_Site INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000429007 -1 known NULL 0.021:0.021 - - - - - - - - - - INTS1 26173 genome.wustl.edu 37 7 1538168 1538169 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001080453.2 -1 validated p.D436fs 1.000:1.000 - - - - - - - - - NULL RUNDC3B 154661 genome.wustl.edu 37 7 87258239 87258240 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_138290.2 +1 validated p.N35fs 1.000:1.000 - - - - - - - - - NULL CTTNBP2 83992 genome.wustl.edu 37 7 117364664 117364664 + Missense_Mutation SNP G G T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_033427.2 -1 reviewed p.P1462T 1.000 112 0% 301 17.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL OR2A7 401427 genome.wustl.edu 37 7 143956495 143956495 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001005328.1 -1 provisional p.T76M 0.030 484 0% 506 28.1% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SSPO 23145 genome.wustl.edu 37 7 149488955 149488956 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000378016 +1 known p.C1766fs 0.991:0.992 - - - - - - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ASIC3 9311 genome.wustl.edu 37 7 150747669 150747670 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020321.2 +1 reviewed p.F264fs 1.000:1.000 - - - - - - - - - HMMPfam_ASC MCART1 92014 genome.wustl.edu 37 9 37879134 37879135 + RNA INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NR_024872.1 -1 validated NULL 1.000:1.000 - - - - - - - - - - C9orf3 84909 genome.wustl.edu 37 9 97525407 97525408 + Splice_Site INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000427193 +1 known e2-1 0.001:0.001 - - - - - - - - - - SLC27A4 10999 genome.wustl.edu 37 9 131117427 131117428 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_005094.3 +1 reviewed p.A474fs 0.999:1.000 - - - - - - - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like WDR34 89891 genome.wustl.edu 37 9 131397170 131397171 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_052844.3 -1 validated p.T337fs 0.999:0.980 - - - - - - - - - superfamily_WD40_like DPP7 29952 genome.wustl.edu 37 9 140006205 140006206 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_013379.2 -1 reviewed p.D403fs 0.972:0.993 - - - - - - - - - HMMPfam_Peptidase_S28 BTAF1 9044 genome.wustl.edu 37 10 93771171 93771172 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_003972.2 +1 validated p.N1438fs 1.000:1.000 - - - - - - - - - HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases PDCD11 22984 genome.wustl.edu 37 10 105181259 105181259 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_014976.1 +1 validated p.S811N 1.000 29 0% 32 34.4% - - possibly_damaging(0.731) tolerated(0.41) neutral(0.282) NULL RNH1 6050 genome.wustl.edu 37 11 502130 502144 + In_Frame_Del DEL CTGGATGTCCAGGCT CTGGATGTCCAGGCT - rs71462090 byCluster;by1000genomes TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 CTGGATGTCCAGGCT CTGGATGTCCAGGCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002939.3 -1 validated p.SLDIQ7in_frame_del 0.844:0.840:0.834:0.827:0.818:0.808:0.797:0.783:0.767:0.748:0.726:0.701:0.672:0.638:0.598 - - - - - - - - - superfamily_SSF52047 PHRF1 57661 genome.wustl.edu 37 11 608064 608065 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020901.2 +1 validated p.A869fs 0.064:0.010 - - - - - - - - - NULL EPS8L2 64787 genome.wustl.edu 37 11 722540 722541 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_022772.3 +1 reviewed p.M400fs 0.801:0.636 - - - - - - - - - NULL SLC43A3 29015 genome.wustl.edu 37 11 57177467 57177467 + Silent SNP G G T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_014096.2 -1 validated p.I396 1.000 81 0% 49 30.6% - - - - - superfamily_MFS_gen_substrate_transporter KCNK4 50801 genome.wustl.edu 37 11 64064613 64064614 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_033310.2 +1 reviewed p.T112fs 1.000:1.000 - - - - - - - - - HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels NRXN2 9379 genome.wustl.edu 37 11 64374709 64374710 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_015080.2 -1 reviewed p.S1699fs 0.999:1.000 - - - - - - - - - NULL BATF2 116071 genome.wustl.edu 37 11 64761962 64761963 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_138456.3 -1 validated p.S34fs 0.992:1.000 - - - - - - - - - HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1 RELA 5970 genome.wustl.edu 37 11 65421862 65421862 + Missense_Mutation SNP T T G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_021975.3 -1 validated p.Q548P 1.000 58 0% 67 26.9% - - possibly_damaging(0.448) deleterious(0.01) deleterious(0.552) NULL AIP 9049 genome.wustl.edu 37 11 67258274 67258275 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_003977.2 +1 reviewed p.F269fs 1.000:1.000 - - - - - - - - - HMMPfam_TPR_2,superfamily_SSF48452 PDE2A 5138 genome.wustl.edu 37 11 72385190 72385191 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002599.3 -1 validated p.P21fs 1.000:1.000 - - - - - - - - - NULL NOX4 50507 genome.wustl.edu 37 11 89059785 89059785 + RNA SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NR_026571.1 -1 reviewed NULL 0.163 29 0% 83 41% - - - - - - GRIA4 2893 genome.wustl.edu 37 11 105845252 105845252 + Silent SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001077243.2 +1 reviewed p.N875 1.000 142 0% 208 44.2% - - - - - NULL TTC12 54970 genome.wustl.edu 37 11 113239281 113239282 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000393020 +1 known p.P651fs 0.013:0.005 - - - - - - - - - NULL HDAC7 51564 genome.wustl.edu 37 12 48192560 48192561 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000445237 -1 known p.M50fs 0.127:0.025 - - - - - - - - - NULL DNAJC22 79962 genome.wustl.edu 37 12 49745112 49745113 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_024902.2 +1 provisional p.E286fs 0.001:0.000 - - - - - - - - - HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N PRPF40B 25766 genome.wustl.edu 37 12 50031547 50031548 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001031698.1 +1 provisional p.V547fs 1.000:1.000 - - - - - - - - - HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain PRIM1 5557 genome.wustl.edu 37 12 57137850 57137851 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_000946.2 -1 reviewed p.R212fs 1.000:1.000 - - - - - - - - - HMMPfam_DNA_primase_S,superfamily_SSF56747 KIF5A 3798 genome.wustl.edu 37 12 57963425 57963425 + Missense_Mutation SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_004984.2 +1 reviewed p.T359M 0.987 339 0% 220 49.1% - - benign(0.317) tolerated(0.23) neutral(0.141) NULL C12orf56 115749 genome.wustl.edu 37 12 64669117 64669118 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001099676.2 -1 validated p.T331fs 0.994:1.000 - - - - - - - - - NULL CDK17 5128 genome.wustl.edu 37 12 96692649 96692649 + Missense_Mutation SNP T T A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002595.3 -1 reviewed p.E238V 1.000 147 0% 200 35% - - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MYBPC1 4604 genome.wustl.edu 37 12 102061574 102061574 + Silent SNP G G T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002465.2 +1 validated p.L807 0.990 184 0.5% 140 35% - - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III DTX1 1840 genome.wustl.edu 37 12 113496176 113496177 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_004416.2 +1 reviewed p.V61fs 1.000:1.000 - - - - - - - - - HMMPfam_WWE,HMMSmart_WWE KNTC1 9735 genome.wustl.edu 37 12 123110773 123110774 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_014708.4 +1 reviewed p.*2211fs 0.011:0.002 - - - - - - - - - NULL PCDH9 5101 genome.wustl.edu 37 13 67802512 67802512 + Missense_Mutation SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_203487.2 -1 reviewed p.A21T 1.000 121 0% 179 45.3% - - benign(0) tolerated(0.09) neutral(0.296) NULL OR4L1 122742 genome.wustl.edu 37 14 20528309 20528309 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001004717.1 +1 provisional p.G36S 0.000 360 0% 577 45.6% - - benign(0) tolerated(0.06) neutral(0.323) superfamily_SSF81321 ARHGEF40 55701 genome.wustl.edu 37 14 21550102 21550103 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_018071.3 +1 validated p.E1025fs 0.001:0.100 - - - - - - - - - NULL NID2 22795 genome.wustl.edu 37 14 52520592 52520592 + Missense_Mutation SNP A A T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_007361.3 -1 validated p.D378E 0.000 286 0% 261 41.4% - - benign(0.122) tolerated(0.3) neutral(0.038) NULL DNAL1 83544 genome.wustl.edu 37 14 74156093 74156094 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_031427.2 +1 validated p.A137fs 1.000:1.000 - - - - - - - - - superfamily_L domain-like BCL11B 64919 genome.wustl.edu 37 14 99640653 99640654 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_138576.2 -1 reviewed p.R841fs 0.970:1.000 - - - - - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers BEGAIN 57596 genome.wustl.edu 37 14 101004528 101004528 + Silent SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020836.3 -1 validated p.D520 0.000 13 0.000 8 0.500 - - - - - NULL BNIP2 663 genome.wustl.edu 37 15 59963500 59963501 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_004330.2 -1 reviewed p.T317fs 1.000:1.000 - - - - - - - - - HMMSmart_SM00516,superfamily_CRAL/TRIO domain PDPK1 5170 genome.wustl.edu 37 16 2647749 2647750 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002613.3 +1 validated p.D552fs 0.971:0.148 - - - - - - - - - NULL ABCC6 368 genome.wustl.edu 37 16 16248841 16248842 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001171.5 -1 reviewed p.G1311fs 0.195:0.182 - - - - - - - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases COG7 91949 genome.wustl.edu 37 16 23464197 23464198 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_153603.3 -1 reviewed p.L40fs 1.000:0.904 - - - - - - - - - HMMPfam_COG7 CDH16 1014 genome.wustl.edu 37 16 66943276 66943277 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_004062.2 -1 reviewed p.C762fs 1.000:1.000 - - - - - - - - - superfamily_Cadherin-like RLTPR 146206 genome.wustl.edu 37 16 67690327 67690328 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001013838.1 +1 provisional p.S1274fs 1.000:1.000 - - - - - - - - - NULL PLD2 5338 genome.wustl.edu 37 17 4721824 4721824 + Missense_Mutation SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002663.3 +1 validated p.P682L 1.000 173 0% 43 67.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Phospholipase D/nuclease NLGN2 57555 genome.wustl.edu 37 17 7311926 7311927 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020795.2 +1 reviewed p.M118fs 1.000:1.000 - - - - - - - - - HMMPfam_COesterase,superfamily_SSF53474 TP53 7157 genome.wustl.edu 37 17 7578479 7578479 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_000546.4 -1 reviewed p.P151S 0.999 313 0% 94 84% - - benign(0.286) deleterious(0.01) deleterious(0.494) superfamily_p53-like transcription factors,HMMPfam_P53 ARHGAP44 9912 genome.wustl.edu 37 17 12852494 12852495 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_014859.4 +1 validated p.K301fs 1.000:1.000 - - - - - - - - - HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP GIT1 28964 genome.wustl.edu 37 17 27901761 27901762 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001085454.1 -1 validated p.K757fs 1.000:1.000 - - - - - - - - - NULL EFCAB5 374786 genome.wustl.edu 37 17 28326966 28326967 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_198529.3 +1 validated p.R340fs 0.819:0.937 - - - - - - - - - superfamily_EF-hand PITPNC1 26207 genome.wustl.edu 37 17 65528935 65528936 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_012417.2 +1 reviewed p.Y22fs 1.000:1.000 - - - - - - - - - HMMPfam_IP_trans,superfamily_Bet v1-like SOGA2 23255 genome.wustl.edu 37 18 8798208 8798209 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_015210.3 +1 predicted p.H785fs 0.242:0.200 - - - - - - - - - NULL LOC100289128 100289128 genome.wustl.edu 37 18 55288993 55288994 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df XM_002343610.1 +1 model p.T32fs 0.000:0.000 - - - - - - - - - NULL RANBP3 8498 genome.wustl.edu 37 19 5917967 5917968 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_007322.2 -1 reviewed p.Y500fs 1.000:1.000 - - - - - - - - - HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like RPS28 6234 genome.wustl.edu 37 19 8386556 8386557 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001031.4 +1 reviewed p.R20fs 1.000:1.000 - - - - - - - - - HMMPfam_Ribosomal_S28e,superfamily_Nucleic acid-binding proteins DOCK6 57572 genome.wustl.edu 37 19 11346278 11346279 + Frame_Shift_Ins INS - - G rs73506659 byCluster;by1000genomes TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020812.2 -1 validated p.D851fs 0.000:0.001 - - - - - - - - - NULL CD97 976 genome.wustl.edu 37 19 14515263 14515264 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_078481.2 +1 reviewed p.H506fs 0.020:0.016 - - - - - - - - - HMMPfam_GPS,HMMSmart_SM00303 TMEM161A 54929 genome.wustl.edu 37 19 19232225 19232226 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_017814.1 -1 provisional p.L269fs 0.966:0.934 - - - - - - - - - HMMPfam_Tmemb_161AB ZNF536 9745 genome.wustl.edu 37 19 30935328 30935328 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_014717.1 +1 provisional p.E287K 1.000 117 0% 731 94.9% - - probably_damaging(0.998) tolerated(0.22) deleterious(0.516) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 LSR 51599 genome.wustl.edu 37 19 35757318 35757319 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_205834.2 +1 validated p.Y328fs 1.000:1.000 - - - - - - - - - NULL ATP1A3 478 genome.wustl.edu 37 19 42489100 42489101 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_152296.3 -1 reviewed p.N321fs 1.000:1.000 - - - - - - - - - HMMPfam_E1-E2_ATPase,superfamily_SSF81665 GPR4 2828 genome.wustl.edu 37 19 46094433 46094434 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_005282.2 -1 validated p.A231fs 1.000:0.998 - - - - - - - - - HMMPfam_7tm_1,superfamily_SSF81321 QPCTL 54814 genome.wustl.edu 37 19 46201885 46201886 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_017659.3 +1 validated p.S239fs 0.997:1.000 - - - - - - - - - HMMPfam_Peptidase_M28,superfamily_SSF53187 ZC3H4 23211 genome.wustl.edu 37 19 47575824 47575825 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_015168.1 -1 validated p.T530fs 0.131:0.975 - - - - - - - - - NULL ADAM33 80332 genome.wustl.edu 37 20 3651889 3651890 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_025220.2 -1 reviewed p.A696fs 0.732:0.005 - - - - - - - - - NULL LRRN4 164312 genome.wustl.edu 37 20 6021881 6021882 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_152611.3 -1 validated p.C671fs 0.357:0.374 - - - - - - - - - NULL PCSK2 5126 genome.wustl.edu 37 20 17417465 17417465 + Silent SNP C C T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002594.2 +1 reviewed p.N274 0.585 121 0% 68 39.7% - - - - - HMMPfam_Peptidase_S8,superfamily_Subtilisin-like MYH7B 57644 genome.wustl.edu 37 20 33583268 33583269 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_020884.3 +1 reviewed p.A987fs 0.995:0.991 - - - - - - - - - superfamily_tRNA-binding arm DIDO1 11083 genome.wustl.edu 37 20 61511059 61511060 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_033081.1 -1 reviewed p.E2084fs 0.011:0.020 - - - - - - - - - NULL PRIC285 85441 genome.wustl.edu 37 20 62196704 62196705 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001037335.2 -1 reviewed p.R1158fs 0.998:0.998 - - - - - - - - - NULL CBR1 873 genome.wustl.edu 37 21 37444524 37444525 + Frame_Shift_Ins INS - - A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df ENST00000399191 +1 known p.S151fs 0.000:0.000 - - - - - - - - - NULL CRYAA 1409 genome.wustl.edu 37 21 44590691 44590692 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_000394.2 +1 reviewed p.T86fs 1.000:1.000 - - - - - - - - - HMMPfam_HSP20,superfamily_HSP20-like chaperones TRPM2 7226 genome.wustl.edu 37 21 45825024 45825025 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_003307.3 +1 reviewed p.L847fs 1.000:1.000 - - - - - - - - - HMMPfam_Ion_trans TPST2 8459 genome.wustl.edu 37 22 26924202 26924203 + Frame_Shift_Ins INS - - T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001008566.1 -1 reviewed p.H373fs 0.979:0.987 - - - - - - - - - NULL MN1 4330 genome.wustl.edu 37 22 28195395 28195396 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_002430.2 -1 reviewed p.R380fs 0.998:1.000 - - - - - - - - - NULL ZNRF3 84133 genome.wustl.edu 37 22 29446836 29446837 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_032173.2 +1 validated p.G790fs 0.001:0.045 - - - - - - - - - NULL RNF185 91445 genome.wustl.edu 37 22 31600834 31600835 + RNA INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NR_024209.1 +1 validated NULL 0.985:0.951 - - - - - - - - - - MPST 4357 genome.wustl.edu 37 22 37420784 37420785 + Frame_Shift_Ins INS - - C novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_021126.4 +1 reviewed p.R196fs 0.015:0.101 - - - - - - - - - HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase SSTR3 6753 genome.wustl.edu 37 22 37603548 37603549 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_001051.2 -1 reviewed p.F98fs 1.000:1.000 - - - - - - - - - HMMPfam_7tm_1,superfamily_SSF81321 LOC100129585 100129585 genome.wustl.edu 37 X 65176110 65176110 + Missense_Mutation SNP G G T novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df XM_001721365.2 -1 model p.P96Q 0.994 404 0.2% 641 29.2% - - - - - NULL PDZD4 57595 genome.wustl.edu 37 X 153069837 153069838 + Frame_Shift_Ins INS - - G novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_032512.2 -1 provisional p.E427fs 0.997:0.998 - - - - - - - - - NULL L1CAM 3897 genome.wustl.edu 37 X 153135086 153135086 + Missense_Mutation SNP G G A novel TCGA-AP-A0LH-01A-11W-A062-09 TCGA-AP-A0LH-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2eb7a2fa-20b3-49b4-8ffb-2f5385fcd9b4 954d0aa0-c496-4e68-a50e-3a61a8da84df NM_000425.3 -1 reviewed p.R386C 0.000 35 0% 27 25.9% - - possibly_damaging(0.904) deleterious(0.04) deleterious(0.708) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin