Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain NOC2L 26155 genome.wustl.edu 37 1 892328 892328 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015658.3 -1 validated p.K144N 0.025 360 0% 415 21.9% 73 36.9% benign(0.313) tolerated(0.13) neutral(0.350) NULL AGRN 375790 genome.wustl.edu 37 1 957623 957623 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198576.2 +1 validated p.R82W 0.985 83 0% 144 25% 34 32.3% probably_damaging(0.985) deleterious(0.04) deleterious(0.781) HMMPfam_NtA,superfamily_TIMP_like AGRN 375790 genome.wustl.edu 37 1 984707 984707 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198576.2 +1 validated p.R1464C 1.000 35 0% 31 22.6% 150 56.6% possibly_damaging(0.936) deleterious(0) deleterious(0.826) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1 FAM132A 388581 genome.wustl.edu 37 1 1178290 1178290 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014980.1 -1 provisional p.C245 1.000 28 0% 42 16.7% 1 100% - - - superfamily_TNF_like CPSF3L 54973 genome.wustl.edu 37 1 1247456 1247456 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017871.4 -1 validated p.A560V 0.996 47 0% 54 24.1% 197 41.6% benign(0) tolerated(1) - NULL CPSF3L 54973 genome.wustl.edu 37 1 1254650 1254650 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429572 -1 known p.A152V 0.003 69 0% 89 23.6% 12 58.3% unknown(0) deleterious(0.03) - NULL LOC100288202 100288202 genome.wustl.edu 37 1 1289151 1289151 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342019.1 +1 model p.C62 0.000 18 0% 23 34.8% 3 0% - - - NULL CCNL2 81669 genome.wustl.edu 37 1 1326184 1326184 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030937.4 -1 validated p.A241T 1.000 92 0% 114 19.3% 54 35.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00385,superfamily_Cyclin-like ATAD3C 219293 genome.wustl.edu 37 1 1391686 1391686 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039211.2 +1 validated p.A216T 0.999 126 0% 123 17.1% 27 0% benign(0.004) tolerated(0.08) neutral(0.300) HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540 ATAD3B 83858 genome.wustl.edu 37 1 1417592 1417592 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031921.4 +1 provisional p.A197T 1.000 26 0% 24 33.3% 18 61.1% probably_damaging(0.958) deleterious(0.04) deleterious(0.750) NULL ATAD3B 83858 genome.wustl.edu 37 1 1421191 1421191 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031921.4 +1 provisional p.Q312H 1.000 285 0% 212 21.2% 17 47% possibly_damaging(0.886) tolerated(0.11) deleterious(0.618) superfamily_P-loop containing nucleoside triphosphate hydrolases ATAD3B 83858 genome.wustl.edu 37 1 1421959 1421959 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031921.4 +1 provisional p.I375 1.000 188 0% 197 19.3% 25 16% - - - HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases SSU72 29101 genome.wustl.edu 37 1 1499982 1499982 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000359060 -1 known p.L132S 0.015 47 0% 44 22.7% 6 0% benign(0.02) - - HMMPfam_Ssu72 MIB2 142678 genome.wustl.edu 37 1 1560705 1560705 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080875.2 +1 validated p.S312I 0.936 36 0% 37 43.2% 28 32.1% possibly_damaging(0.905) tolerated(0.12) deleterious(0.620) NULL CDK11A 728642 genome.wustl.edu 37 1 1654209 1654209 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024011.2 -1 reviewed p.L17F 1.000 724 0% 859 15.7% 9 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CALML6 163688 genome.wustl.edu 37 1 1848297 1848297 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138705.2 +1 validated p.D120 1.000 128 0% 125 24% 0 - - - - HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473 TMEM52 339456 genome.wustl.edu 37 1 1849331 1849331 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178545.3 -1 validated p.G207D 0.000 228 0% 261 22.6% 1 0% probably_damaging(0.998) - - NULL TMEM52 339456 genome.wustl.edu 37 1 1849767 1849767 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178545.3 -1 validated p.P92T 0.006 38 0% 40 30% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL KIAA1751 85452 genome.wustl.edu 37 1 1887080 1887080 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080484.1 -1 predicted p.L742 0.010 38 0% 41 39% 0 - - - - NULL KIAA1751 85452 genome.wustl.edu 37 1 1896346 1896346 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080484.1 -1 predicted p.P519L 0.979 46 0% 39 17.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL KIAA1751 85452 genome.wustl.edu 37 1 1902218 1902218 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080484.1 -1 predicted p.K309T 0.573 69 0% 67 13.4% 0 - possibly_damaging(0.701) tolerated(0.18) neutral(0.308) NULL KIAA1751 85452 genome.wustl.edu 37 1 1918418 1918418 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080484.1 -1 predicted p.A118D 0.001 15 0% 23 52.2% 1 100% benign(0.047) tolerated(0.09) neutral(0.299) NULL GABRD 2563 genome.wustl.edu 37 1 1960629 1960629 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000815.4 +1 reviewed p.P257 0.999 72 0% 109 16.5% 0 - - - - HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM PRKCZ 5590 genome.wustl.edu 37 1 1987971 1987971 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002744.4 +1 reviewed p.R81H 1.000 113 0% 182 22.5% 20 40% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277 MORN1 79906 genome.wustl.edu 37 1 2303982 2303982 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024848.1 -1 provisional p.A228V 0.000 152 0% 140 23.6% 6 50% benign(0.005) tolerated(0.54) neutral(0.007) NULL PEX10 5192 genome.wustl.edu 37 1 2338299 2338299 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153818.1 -1 reviewed p.R232 0.001 34 0% 42 31% 36 44.4% - - - HMMPfam_Pex2_Pex12 PLCH2 9651 genome.wustl.edu 37 1 2418808 2418808 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014638.2 +1 provisional p.C369 0.645 76 0% 83 25.3% 0 - - - - HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases PANK4 55229 genome.wustl.edu 37 1 2441347 2441347 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018216.1 -1 reviewed p.L688 0.995 76 0% 73 27.4% 45 46.6% - - - HMMPfam_DUF89,superfamily_Hypothetical protein At2g17340 PANK4 55229 genome.wustl.edu 37 1 2450616 2450616 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018216.1 -1 reviewed p.R334H 1.000 59 0% 61 26.2% 19 47.3% benign(0.001) tolerated(0.82) neutral(0.001) HMMPfam_Fumble TNFRSF14 8764 genome.wustl.edu 37 1 2489852 2489852 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003820.2 +1 reviewed p.Y83 0.746 71 0% 82 29.3% 228 33.7% - - - HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like MMEL1 79258 genome.wustl.edu 37 1 2537720 2537720 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033467.3 -1 reviewed p.N230 0.242 56 0% 48 33.3% 0 - - - - "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" TPRG1L 127262 genome.wustl.edu 37 1 3542047 3542047 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182752.3 +1 validated p.D87 1.000 41 0% 24 37.5% 12 41.6% - - - PatternScan_LIPOCALIN TP73 7161 genome.wustl.edu 37 1 3638670 3638670 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005427.2 +1 reviewed p.G172V 1.000 241 0.4% 182 22.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_p53-like transcription factors,HMMPfam_P53 CCDC27 148870 genome.wustl.edu 37 1 3670736 3670736 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152492.2 +1 validated p.R125* 0.000 111 0% 102 22.5% 1 0% - - - NULL CCDC27 148870 genome.wustl.edu 37 1 3673399 3673399 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152492.2 +1 validated p.S219Y 0.000 65 0% 60 20% 0 - possibly_damaging(0.449) tolerated(0.06) deleterious(0.470) NULL CCDC27 148870 genome.wustl.edu 37 1 3679808 3679808 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152492.2 +1 validated p.S364Y 0.000 350 0% 269 22.7% 0 - benign(0.053) tolerated(0.11) neutral(0.275) NULL LRRC47 57470 genome.wustl.edu 37 1 3698151 3698151 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020710.2 -1 validated p.T476 0.000 195 0% 235 22.6% 61 47.5% - - - HMMPfam_B3_4 LRRC47 57470 genome.wustl.edu 37 1 3701727 3701727 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020710.2 -1 validated p.A373V 1.000 107 0% 111 9.9% 70 17.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_B3_4 CEP104 9731 genome.wustl.edu 37 1 3731982 3731982 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014704.3 -1 validated p.T921M 0.912 114 0% 118 16.9% 32 40.6% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL CEP104 9731 genome.wustl.edu 37 1 3753085 3753085 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014704.3 -1 validated p.A431T 0.946 153 0% 112 26.8% 19 47.3% benign(0.02) tolerated(0.05) neutral(0.346) NULL CEP104 9731 genome.wustl.edu 37 1 3755567 3755567 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014704.3 -1 validated p.Y284 0.997 183 0.5% 111 18.9% 14 50% - - - NULL DFFB 1677 genome.wustl.edu 37 1 3775293 3775293 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004402.2 +1 reviewed p.R42 0.001 81 0% 143 25.2% 0 - - - - HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD PB1 domains NPHP4 261734 genome.wustl.edu 37 1 5940215 5940215 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015102.2 -1 reviewed p.R857H 0.001 185 0.5% 145 24.8% 8 25% benign(0.002) tolerated(0.56) neutral(0.006) NULL CHD5 26038 genome.wustl.edu 37 1 6169879 6169879 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015557.1 -1 provisional p.P1852S 1.000 58 0% 74 12.2% 0 - possibly_damaging(0.95) deleterious(0.04) deleterious(0.742) HMMPfam_CHDCT2 CHD5 26038 genome.wustl.edu 37 1 6206794 6206794 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015557.1 -1 provisional p.P507 0.001 51 0% 80 25% 1 0% - - - HMMSmart_CHROMO,superfamily_Chromodomain-like CHD5 26038 genome.wustl.edu 37 1 6209115 6209115 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015557.1 -1 provisional p.W394* 1.000 62 0% 51 23.5% 0 - - - - superfamily_FYVE_PHD_ZnF RNF207 388591 genome.wustl.edu 37 1 6270289 6270289 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207396.2 +1 validated p.Y269 0.886 109 0% 119 23.5% 7 57.1% - - - NULL RNF207 388591 genome.wustl.edu 37 1 6272336 6272336 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207396.2 +1 validated p.L448 0.896 69 0% 104 27.9% 10 50% - - - NULL LINC00337 148645 genome.wustl.edu 37 1 6298735 6298735 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_040930.2 +1 model NULL 0.000 135 0% 141 17.7% 1 0% - - - - GPR153 387509 genome.wustl.edu 37 1 6314702 6314702 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207370.2 -1 validated p.S88 1.000 301 0.3% 212 22.2% 5 20% - - - HMMPfam_7tm_1,superfamily_SSF81321 ACOT7 11332 genome.wustl.edu 37 1 6393544 6393544 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181864.2 -1 reviewed p.P178H 1.000 296 0% 224 12.5% 117 27.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_Thioesterase/thiol ester dehydrase-isomerase NOL9 79707 genome.wustl.edu 37 1 6586041 6586041 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024654.4 -1 validated p.P661H 0.996 391 0% 193 21.2% 25 36% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TAS1R1 80835 genome.wustl.edu 37 1 6639591 6639591 + Nonsense_Mutation SNP G G T rs143210457 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138697.3 +1 reviewed p.E825* 0.638 103 0% 98 24.5% 0 - - - - NULL KLHL21 9903 genome.wustl.edu 37 1 6659480 6659480 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014851.2 -1 provisional p.V352M 1.000 57 0% 65 18.5% 18 44.4% probably_damaging(0.991) tolerated(0.21) deleterious(0.488) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain PHF13 148479 genome.wustl.edu 37 1 6680096 6680096 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153812.2 +1 validated p.R125S 1.000 58 0% 77 20.8% 9 22.2% possibly_damaging(0.793) deleterious(0.02) deleterious(0.681) NULL CAMTA1 23261 genome.wustl.edu 37 1 7724013 7724013 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015215.1 +1 validated p.T469N 1.000 97 0% 89 23.6% 0 - probably_damaging(0.955) tolerated(0.44) neutral(0.411) NULL CAMTA1 23261 genome.wustl.edu 37 1 7731014 7731014 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015215.1 +1 validated p.S899I 1.000 87 0% 153 24.2% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_TIG,superfamily_E set domains CAMTA1 23261 genome.wustl.edu 37 1 7737705 7737705 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015215.1 +1 validated p.Q942H 1.000 332 0% 390 25.4% 0 - probably_damaging(0.998) tolerated(0.32) deleterious(0.498) HMMPfam_TIG,superfamily_E set domains PER3 8863 genome.wustl.edu 37 1 7879357 7879357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016831.1 +1 reviewed p.T504N 0.000 374 0% 203 25.1% 2 100% benign(0.004) tolerated(0.16) neutral(0.059) NULL ERRFI1 54206 genome.wustl.edu 37 1 8075612 8075612 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018948.3 -1 validated p.G23D 1.000 342 0% 204 22.1% 4 25% probably_damaging(0.974) deleterious(0.03) deleterious(0.780) HMMPfam_GTPase_binding SLC2A7 155184 genome.wustl.edu 37 1 9064828 9064828 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207420.2 -1 provisional p.L435M 0.931 118 0% 95 27.4% 1 100% benign(0.089) deleterious(0.03) neutral(0.371) HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter SLC2A5 6518 genome.wustl.edu 37 1 9129575 9129575 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003039.2 -1 validated p.S7 0.296 401 0% 461 25.2% 2 0% - - - superfamily_MFS_gen_substrate_transporter H6PD 9563 genome.wustl.edu 37 1 9305387 9305387 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004285.3 +1 reviewed p.G132C 0.998 63 0% 85 17.6% 3 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_G6PD_N,superfamily_NAD(P)-bd H6PD 9563 genome.wustl.edu 37 1 9323698 9323698 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004285.3 +1 reviewed p.S382 0.983 61 0% 53 22.6% 1 0% - - - superfamily_SSF55347 SLC25A33 84275 genome.wustl.edu 37 1 9642368 9642368 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032315.2 +1 validated p.T259A 1.000 141 0% 202 22.8% 41 34.1% possibly_damaging(0.853) deleterious(0) deleterious(0.773) superfamily_Mitoch_carrier,HMMPfam_Mito_carr TMEM201 199953 genome.wustl.edu 37 1 9661204 9661204 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000416541 +1 known p.A126S 1.000 100 0% 90 23.3% 16 56.2% - - - HMMPfam_DUF2448 PIK3CD 5293 genome.wustl.edu 37 1 9782086 9782086 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005026.3 +1 validated p.S703 0.966 94 0% 99 25.3% 16 0% - - - superfamily_Kinase_like CLSTN1 22883 genome.wustl.edu 37 1 9795613 9795613 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009566.1 -1 validated p.D599N 0.998 375 0% 362 10.8% 64 12.5% benign(0.317) tolerated(1) neutral(0.099) NULL CLSTN1 22883 genome.wustl.edu 37 1 9796068 9796068 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009566.1 -1 validated p.G537S 1.000 96 0% 103 23.3% 45 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Concanavalin A-like lectins/glucanases LZIC 84328 genome.wustl.edu 37 1 9995549 9995549 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032368.3 -1 provisional e2+1 1.000 495 0% 355 13% 0 - - - - - UBE4B 10277 genome.wustl.edu 37 1 10189462 10189462 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105562.1 +1 reviewed p.L551F 1.000 361 0% 122 24.6% 11 45.4% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL UBE4B 10277 genome.wustl.edu 37 1 10207055 10207055 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105562.1 +1 reviewed p.G833D 1.000 269 0% 131 23.7% 15 53.3% possibly_damaging(0.928) deleterious(0.01) deleterious(0.781) HMMPfam_Ufd2P_core KIF1B 23095 genome.wustl.edu 37 1 10364617 10364617 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183416.3 +1 reviewed p.S1125N 0.970 68 0% 15 26.7% 3 33.3% benign(0) deleterious(0.01) neutral(0.406) NULL CASZ1 54897 genome.wustl.edu 37 1 10714089 10714089 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079843.1 -1 validated p.C675 1.000 142 0% 126 23.8% 9 33.3% - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CASZ1 54897 genome.wustl.edu 37 1 10714519 10714519 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079843.1 -1 validated p.D599N 0.995 192 0% 255 26.3% 3 66.6% possibly_damaging(0.484) tolerated(0.24) neutral(0.198) NULL SRM 6723 genome.wustl.edu 37 1 11116811 11116811 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003132.2 -1 validated p.V129I 1.000 158 0% 186 26.9% 226 40.2% possibly_damaging(0.857) deleterious(0.01) deleterious(0.737) HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases EXOSC10 5394 genome.wustl.edu 37 1 11139830 11139830 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001998.1 -1 validated p.R563W 1.000 243 0% 173 23.7% 96 40.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HRDC,HMMSmart_SM00341 MTOR 2475 genome.wustl.edu 37 1 11259711 11259711 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004958.3 -1 reviewed p.D1332N 1.000 270 0% 71 15.5% 8 25% benign(0.004) tolerated(0.14) neutral(0.249) superfamily_ARM-type_fold MTOR 2475 genome.wustl.edu 37 1 11292504 11292504 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004958.3 -1 reviewed p.A835S 1.000 194 0% 90 24.4% 2 0% benign(0.022) tolerated(0.65) neutral(0.004) superfamily_ARM-type_fold MTOR 2475 genome.wustl.edu 37 1 11317186 11317186 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004958.3 -1 reviewed p.R103Q 1.000 126 0% 141 20.6% 2 50% benign(0.276) tolerated(0.22) neutral(0.072) superfamily_ARM-type_fold FBXO44 93611 genome.wustl.edu 37 1 11718814 11718814 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183412.2 +1 reviewed p.R129W 0.995 86 0% 103 15.5% 50 26% probably_damaging(0.982) deleterious(0) deleterious(0.871) NULL FBXO6 26270 genome.wustl.edu 37 1 11732027 11732027 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018438.5 +1 reviewed p.G152 1.000 181 0% 201 23.9% 89 33.7% - - - HMMPfam_FBA,superfamily_Galactose-binding domain-like MAD2L2 10459 genome.wustl.edu 37 1 11736175 11736175 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127325.1 -1 reviewed p.V119M 1.000 94 1.1% 88 15.9% 111 34.2% probably_damaging(0.957) deleterious(0.03) deleterious(0.765) HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2 C1orf187 374946 genome.wustl.edu 37 1 11771993 11771993 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198545.3 +1 validated p.P243H 0.994 165 0% 141 20.6% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MTHFR 4524 genome.wustl.edu 37 1 11850759 11850759 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005957.4 -1 reviewed p.A650V 0.000 154 0% 119 23.5% 9 33.3% benign(0.002) tolerated(0.21) neutral(0.044) NULL CLCN6 1185 genome.wustl.edu 37 1 11888256 11888256 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021735.2 +1 reviewed p.A315V 1.000 536 0% 452 22.3% 2 50% unknown(0) - - NULL NPPB 4879 genome.wustl.edu 37 1 11918333 11918333 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002521.2 -1 reviewed p.G109V 0.000 42 0% 56 23.2% 0 - possibly_damaging(0.934) tolerated(0.15) deleterious(0.621) HMMPfam_ANP,HMMSmart_NAT_PEP PLOD1 5351 genome.wustl.edu 37 1 12009829 12009829 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000302.2 +1 reviewed e3-1 1.000 330 0% 199 24.6% 2 100% - - - - PLOD1 5351 genome.wustl.edu 37 1 12017981 12017981 + Missense_Mutation SNP G G A rs184999645 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000302.2 +1 reviewed p.R275H 0.923 50 0% 64 31.2% 70 58.5% probably_damaging(0.998) tolerated(0.29) deleterious(0.503) NULL PLOD1 5351 genome.wustl.edu 37 1 12026353 12026353 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000302.2 +1 reviewed p.A544T 0.957 125 0% 76 28.9% 89 6.7% unknown(0) tolerated(0.58) - NULL PLOD1 5351 genome.wustl.edu 37 1 12027052 12027052 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000302.2 +1 reviewed p.P553 0.001 280 0% 246 13.8% 125 28% - - - HMMSmart_P4Hc TNFRSF8 943 genome.wustl.edu 37 1 12170255 12170255 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001243.3 +1 reviewed p.D224Y 0.039 77 0% 51 9.8% 1 0% benign(0.429) deleterious(0) deleterious(0.584) NULL TNFRSF8 943 genome.wustl.edu 37 1 12186103 12186103 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001243.3 +1 reviewed p.R417W 0.008 353 0% 211 26.1% 0 - benign(0.015) deleterious(0.01) neutral(0.406) NULL VPS13D 55187 genome.wustl.edu 37 1 12337195 12337195 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000011700 +1 known p.W6* 0.995 119 0% 39 25.6% 0 - benign(0) tolerated(0.59) neutral(0.004) NULL VPS13D 55187 genome.wustl.edu 37 1 12342965 12342965 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000011700 +1 known p.P425H 0.153 251 0% 80 20% 0 - - - - NULL VPS13D 55187 genome.wustl.edu 37 1 12371619 12371619 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000011700 +1 known p.T1076I 1.000 340 0% 142 21.1% 2 0% - - - NULL VPS13D 55187 genome.wustl.edu 37 1 12378384 12378384 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000011700 +1 known p.S1291L 1.000 424 0% 154 15.6% 2 0% - - - NULL PRAMEF1 65121 genome.wustl.edu 37 1 12855862 12855862 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023013.1 +1 provisional p.T381I 0.003 399 0% 140 25% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) superfamily_SSF52047 PRAMEF11 440560 genome.wustl.edu 37 1 12884845 12884845 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342032.1 -1 model p.A499V 0.001 269 0% 103 20.4% 0 - - - - NULL PRDM2 7799 genome.wustl.edu 37 1 14105063 14105063 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012231.4 +1 reviewed p.A258V 0.471 81 1.2% 31 25.8% 4 50% unknown(0) tolerated(1) - NULL PRDM2 7799 genome.wustl.edu 37 1 14106530 14106530 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012231.4 +1 reviewed p.S747I 1.000 146 0% 78 19.2% 3 66.6% unknown(0) deleterious(0.01) - NULL PRDM2 7799 genome.wustl.edu 37 1 14108976 14108976 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012231.4 +1 reviewed p.S1562 0.894 110 0% 57 12.3% 4 100% - - - NULL KAZ 23254 genome.wustl.edu 37 1 15390100 15390100 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201628.2 +1 validated p.L360 1.000 117 0% 139 19.4% 35 45.7% - - - NULL KAZ 23254 genome.wustl.edu 37 1 15438947 15438947 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201628.2 +1 validated p.E691D 1.000 96 1% 85 23.5% 4 50% possibly_damaging(0.945) tolerated(0.07) deleterious(0.709) NULL KAZ 23254 genome.wustl.edu 37 1 15439013 15439013 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201628.2 +1 validated p.S713 0.000 112 0% 103 18.4% 3 100% - - - NULL FHAD1 114827 genome.wustl.edu 37 1 15598843 15598843 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052929.1 +1 provisional p.A40T 0.998 93 0% 46 32.6% 2 50% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain FHAD1 114827 genome.wustl.edu 37 1 15642873 15642873 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052929.1 +1 provisional e8-1 1.000 211 0% 156 21.2% 0 - - - - - FHAD1 114827 genome.wustl.edu 37 1 15679372 15679372 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052929.1 +1 provisional e18-1 0.977 252 0% 123 16.3% 0 - - - - - FHAD1 114827 genome.wustl.edu 37 1 15686989 15686989 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052929.1 +1 provisional p.R896W 0.115 156 0.6% 82 19.5% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL FHAD1 114827 genome.wustl.edu 37 1 15689190 15689190 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000444385 +1 known p.A302V 0.000 110 0% 63 17.5% 0 - - - - NULL CASP9 842 genome.wustl.edu 37 1 15819480 15819480 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424908 -1 known p.L185F 0.740 166 0% 137 13.1% 11 27.2% - - - HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like CASP9 842 genome.wustl.edu 37 1 15821789 15821789 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001229.2 -1 reviewed p.V343M 1.000 179 0% 93 12.9% 11 9% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like DNAJC16 23341 genome.wustl.edu 37 1 15860795 15860795 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015291.2 +1 provisional p.Y77 0.035 296 0% 162 23.5% 2 50% - - - HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1 RSC1A1 6248 genome.wustl.edu 37 1 15986911 15986911 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006511.1 +1 provisional p.A183V 0.000 151 0% 45 17.8% 9 33.3% benign(0) tolerated(0.48) neutral(0.011) NULL PLEKHM2 23207 genome.wustl.edu 37 1 16046247 16046247 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015164.2 +1 validated p.L162M 1.000 287 0% 175 22.9% 29 41.3% possibly_damaging(0.775) deleterious(0.03) deleterious(0.653) NULL PLEKHM2 23207 genome.wustl.edu 37 1 16053913 16053913 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015164.2 +1 validated p.P449L 0.970 19 0% 18 55.6% 20 20% benign(0.003) deleterious(0) neutral(0.445) NULL FBLIM1 54751 genome.wustl.edu 37 1 16111126 16111126 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017556.2 +1 reviewed p.H364 0.774 173 0% 129 18.6% 49 61.2% - - - HMMPfam_LIM SPEN 23013 genome.wustl.edu 37 1 16261486 16261486 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015001.2 +1 reviewed p.L2917 0.279 95 0% 102 21.6% 10 30% - - - NULL CLCNKB 1188 genome.wustl.edu 37 1 16373092 16373092 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000085.3 +1 reviewed p.V98M 0.599 243 0.4% 226 21.7% 0 - benign(0.143) tolerated(0.2) neutral(0.061) superfamily_Clc chloride channel FAM131C 348487 genome.wustl.edu 37 1 16390069 16390069 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182623.2 -1 validated p.D29Y 0.371 223 0% 202 24.3% 0 - benign(0.267) deleterious(0) deleterious(0.473) NULL ARHGEF19 128272 genome.wustl.edu 37 1 16532151 16532151 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153213.3 -1 provisional p.P488H 1.000 40 0% 55 29.1% 5 20% probably_damaging(0.998) tolerated(0.1) deleterious(0.761) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) ARHGEF19 128272 genome.wustl.edu 37 1 16532769 16532769 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153213.3 -1 provisional p.F402V 1.000 63 0% 88 27.3% 4 25% probably_damaging(0.953) deleterious(0) deleterious(0.841) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) ARHGEF19 128272 genome.wustl.edu 37 1 16535419 16535419 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153213.3 -1 provisional p.S44N 0.804 50 0% 61 13.1% 0 - benign(0.141) deleterious(0.01) neutral(0.418) NULL FBXO42 54455 genome.wustl.edu 37 1 16577762 16577762 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018994.1 -1 provisional p.D519 0.985 85 0% 54 18.5% 37 35.1% - - - NULL C1orf144 26099 genome.wustl.edu 37 1 16717883 16717883 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114600.1 +1 provisional p.R22Q 1.000 352 0% 313 19.5% 15 13.3% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL ATP13A2 23400 genome.wustl.edu 37 1 17313011 17313011 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022089.2 -1 reviewed p.L1118M 0.998 50 0% 58 22.4% 58 34.4% probably_damaging(0.978) deleterious(0.01) deleterious(0.826) NULL ATP13A2 23400 genome.wustl.edu 37 1 17313328 17313328 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022089.2 -1 reviewed p.A1069 0.809 59 0% 54 14.8% 111 16.2% - - - superfamily_Calcium ATPase transmembrane domain M PADI1 29943 genome.wustl.edu 37 1 17555452 17555452 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013358.2 +1 reviewed p.E279K 0.985 53 0% 55 23.6% 0 - possibly_damaging(0.918) deleterious(0.04) deleterious(0.718) HMMPfam_PAD,superfamily_Peptidylarginine deiminase Pad4 middle domain RCC2 55920 genome.wustl.edu 37 1 17748699 17748699 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136204.1 -1 validated p.Q248H 1.000 159 0% 237 17.3% 45 2.2% benign(0.015) tolerated(0.13) neutral(0.253) superfamily_RCC1/BLIP-II ARHGEF10L 55160 genome.wustl.edu 37 1 17939651 17939651 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018125.3 +1 validated p.K236N 1.000 127 0% 89 20.2% 0 - possibly_damaging(0.895) tolerated(0.05) deleterious(0.698) NULL ARHGEF10L 55160 genome.wustl.edu 37 1 17952515 17952515 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018125.3 +1 validated p.R461M 1.000 117 0% 123 23.6% 11 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) ARHGEF10L 55160 genome.wustl.edu 37 1 18021730 18021730 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018125.3 +1 validated p.V1088I 1.000 68 0% 87 21.8% 49 36.7% benign(0.292) tolerated(0.16) neutral(0.149) superfamily_WD40 repeat-like TAS1R2 80834 genome.wustl.edu 37 1 19166262 19166262 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152232.2 -1 validated p.S784I 0.001 272 0% 127 29.9% 0 - benign(0.016) tolerated(0.07) neutral(0.320) HMMPfam_7tm_3 TAS1R2 80834 genome.wustl.edu 37 1 19167004 19167004 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152232.2 -1 validated p.A537T 0.058 54 0% 45 28.9% 0 - benign(0) tolerated(0.13) neutral(0.253) HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_SSF57586 TAS1R2 80834 genome.wustl.edu 37 1 19175955 19175955 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152232.2 -1 validated p.E449 0.265 140 0% 103 16.5% 0 - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 ALDH4A1 8659 genome.wustl.edu 37 1 19200963 19200963 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003748.3 -1 reviewed p.A525S 0.983 67 0% 118 24.6% 18 38.8% benign(0.018) tolerated(0.09) neutral(0.297) HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH ALDH4A1 8659 genome.wustl.edu 37 1 19201972 19201972 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003748.3 -1 reviewed p.V455A 0.998 88 0% 90 11.1% 19 63.1% benign(0.04) tolerated(0.11) neutral(0.274) HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH UBR4 23352 genome.wustl.edu 37 1 19440221 19440221 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020765.2 -1 validated p.S3810Y 1.000 181 0% 83 27.7% 16 12.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_ARM repeat KIAA0090 23065 genome.wustl.edu 37 1 19571427 19571427 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015047.1 -1 predicted p.A65S 1.000 308 0% 262 20.2% 16 37.5% benign(0.019) tolerated(0.46) neutral(0.013) superfamily_Quinoprotein alcohol dehydrogenase-like NBL1 4681 genome.wustl.edu 37 1 19981562 19981562 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182744.2 +1 reviewed p.A48 0.996 39 0% 54 24.1% 90 26.6% - - - HMMPfam_DAN VWA5B1 127731 genome.wustl.edu 37 1 20659359 20659359 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039500.2 +1 validated p.S558I 0.994 195 0% 123 18.7% 0 - probably_damaging(0.996) tolerated(0.05) deleterious(0.807) NULL VWA5B1 127731 genome.wustl.edu 37 1 20680538 20680538 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039500.2 +1 validated p.V1144M 1.000 52 0% 54 29.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL DDOST 1650 genome.wustl.edu 37 1 20978970 20978970 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005216.4 -1 reviewed p.A425T 1.000 100 0% 89 21.3% 514 40.2% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_DDOST_48kD KIF17 57576 genome.wustl.edu 37 1 21009276 21009276 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020816.2 -1 validated p.R778M 0.962 104 0% 61 21.3% 3 33.3% possibly_damaging(0.929) deleterious(0.01) deleterious(0.782) NULL KIF17 57576 genome.wustl.edu 37 1 21013893 21013893 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020816.2 -1 validated p.K642N 0.078 31 0% 33 27.3% 1 100% possibly_damaging(0.646) deleterious(0.02) deleterious(0.610) NULL KIF17 57576 genome.wustl.edu 37 1 21036273 21036273 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020816.2 -1 validated p.H177Y 1.000 108 0% 77 19.5% 0 - possibly_damaging(0.88) tolerated(0.65) neutral(0.346) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 EIF4G3 8672 genome.wustl.edu 37 1 21276576 21276576 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003760.3 -1 validated p.S192I 1.000 95 0% 36 44.4% 13 46.1% possibly_damaging(0.855) deleterious(0.01) deleterious(0.736) NULL EIF4G3 8672 genome.wustl.edu 37 1 21307562 21307562 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003760.3 -1 validated p.G63 0.649 142 0% 57 17.5% 5 60% - - - NULL NBPF3 84224 genome.wustl.edu 37 1 21800067 21800067 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032264.2 +1 validated p.C310Y 0.000 476 0.2% 152 19.1% 7 57.1% benign(0.066) tolerated(0.61) neutral(0.009) NULL ALPL 249 genome.wustl.edu 37 1 21890654 21890654 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000478.4 +1 reviewed p.S198N 1.000 78 0% 68 19.1% 11 63.6% benign(0) tolerated(0.43) neutral(0.013) HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core USP48 84196 genome.wustl.edu 37 1 22055141 22055141 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032236.5 -1 reviewed p.R458C 1.000 477 0.4% 156 24.4% 23 30.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL HSPG2 3339 genome.wustl.edu 37 1 22151229 22151229 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374695 -1 known p.F4211L 1.000 98 0% 118 32.2% 201 30.3% probably_damaging(0.977) deleterious(0.04) deleterious(0.768) superfamily_Concanavalin A-like lectins/glucanases HSPG2 3339 genome.wustl.edu 37 1 22169365 22169365 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005529.5 -1 reviewed p.D2916N 0.854 95 0% 102 23.5% 18 33.3% - - - NULL HSPG2 3339 genome.wustl.edu 37 1 22170711 22170711 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374695 -1 known p.V2849A 0.993 42 0% 40 20% 27 33.3% possibly_damaging(0.917) tolerated(0.33) neutral(0.392) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_I-set,superfamily_Immunoglobulin HSPG2 3339 genome.wustl.edu 37 1 22206914 22206914 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374695 -1 known p.D713Y 1.000 60 0% 59 22% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_B,HMMSmart_SM00281 CELA3B 23436 genome.wustl.edu 37 1 22307555 22307555 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007352.2 +1 reviewed p.V84 0.869 184 0% 110 18.2% 0 - - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases EPHA8 2046 genome.wustl.edu 37 1 22903002 22903002 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020526.3 +1 reviewed p.D151G 1.000 68 0% 97 11.3% 0 - probably_damaging(0.999) tolerated(0.07) deleterious(0.809) HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like EPHA8 2046 genome.wustl.edu 37 1 22924303 22924303 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020526.3 +1 reviewed p.G689R 1.000 61 0% 41 19.5% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like EPHB2 2048 genome.wustl.edu 37 1 23222908 23222908 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004442.6 +1 reviewed p.R569W 1.000 107 0% 83 14.5% 2 50% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL EPHB2 2048 genome.wustl.edu 37 1 23237047 23237047 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004442.6 +1 reviewed p.A893D 1.000 59 0% 49 20.4% 11 27.2% possibly_damaging(0.9) tolerated(0.27) neutral(0.390) superfamily_Kinase_like HTR1D 3352 genome.wustl.edu 37 1 23520033 23520033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000864.4 -1 validated p.R227H 1.000 120 0% 67 29.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 HNRNPR 10236 genome.wustl.edu 37 1 23665084 23665084 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102398.1 -1 reviewed p.D59N 1.000 268 0% 289 21.1% 44 29.5% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) NULL ENSG00000249087 0 genome.wustl.edu 37 1 23695852 23695852 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000507744 +1 known p.R21I 0.998 35 0% 55 10.9% 1 100% unknown(0) - - NULL TCEB3 6924 genome.wustl.edu 37 1 24082436 24082436 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003198.2 +1 reviewed p.R658Q 1.000 191 0% 143 20.3% 56 44.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Elongin_A MYOM3 127294 genome.wustl.edu 37 1 24432469 24432469 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152372.3 -1 validated p.E167 0.052 49 0% 50 28% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin IL22RA1 58985 genome.wustl.edu 37 1 24449805 24449805 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021258.2 -1 reviewed p.P260H 0.939 140 0% 87 11.5% 0 - probably_damaging(0.982) deleterious(0.01) deleterious(0.832) NULL IL28RA 163702 genome.wustl.edu 37 1 24484172 24484172 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170743.2 -1 reviewed p.G337 0.000 304 0% 125 13.6% 1 0% - - - NULL C1orf201 90529 genome.wustl.edu 37 1 24687488 24687488 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178122.3 -1 predicted p.P214S 0.952 228 0% 117 22.2% 8 62.5% unknown(0) deleterious(0) - NULL SRRM1 10250 genome.wustl.edu 37 1 24977935 24977935 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005839.3 +1 validated p.S186Y 0.995 217 0% 188 22.9% 29 41.3% unknown(0) tolerated(0.06) - NULL RUNX3 864 genome.wustl.edu 37 1 25228914 25228914 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031680.2 -1 reviewed p.P330L 1.000 44 0% 32 28.1% 5 40% benign(0.013) tolerated(0.25) neutral(0.037) HMMPfam_RunxI RHD 6007 genome.wustl.edu 37 1 25599138 25599138 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016124.3 +1 reviewed p.Y34H 0.011 451 0% 392 12% 0 - possibly_damaging(0.463) deleterious(0.04) deleterious(0.501) HMMPfam_Ammonium_transp STMN1 3925 genome.wustl.edu 37 1 26227520 26227520 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005563.3 -1 reviewed p.T146N 0.989 713 0% 763 24.9% 879 42.3% benign(0) deleterious(0.01) neutral(0.406) NULL PAFAH2 5051 genome.wustl.edu 37 1 26310447 26310447 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000437.3 -1 reviewed p.R181Q 0.978 316 0.3% 164 25.6% 12 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases EXTL1 2134 genome.wustl.edu 37 1 26355705 26355705 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004455.2 +1 reviewed p.L267 0.806 61 0% 60 23.3% 0 - - - - HMMPfam_Exostosin SLC30A2 7780 genome.wustl.edu 37 1 26370919 26370919 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004434.1 -1 validated p.H96 0.963 129 0% 162 27.2% 0 - - - - HMMPfam_Cation_efflux TRIM63 84676 genome.wustl.edu 37 1 26393918 26393918 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032588.2 -1 reviewed p.C23Y 1.000 164 0% 101 19.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 PDIK1L 149420 genome.wustl.edu 37 1 26449101 26449101 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026685.1 +1 validated NULL 0.999 55 0% 45 13.3% 4 0% - - - - CNKSR1 10256 genome.wustl.edu 37 1 26515295 26515295 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006314.2 +1 reviewed p.R575W 0.000 64 0% 73 23.3% 30 60% benign(0.003) tolerated(0.05) neutral(0.345) NULL CATSPER4 378807 genome.wustl.edu 37 1 26517884 26517884 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198137.1 +1 validated p.I107T 1.000 145 0% 139 23% 0 - possibly_damaging(0.83) deleterious(0.01) deleterious(0.721) superfamily_Voltage-gated potassium channels CATSPER4 378807 genome.wustl.edu 37 1 26526445 26526445 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198137.1 +1 validated p.A295T 1.000 299 0.3% 178 20.2% 0 - probably_damaging(1) tolerated(0.45) deleterious(0.512) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CEP85 64793 genome.wustl.edu 37 1 26581859 26581859 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022778.2 +1 provisional p.G136S 0.001 348 0% 108 26.9% 2 50% benign(0) tolerated(0.36) neutral(0.020) NULL ZNF683 257101 genome.wustl.edu 37 1 26691716 26691716 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374203 -1 known p.S24N 0.004 78 0% 62 22.6% 35 0% benign(0.138) tolerated(0.34) neutral(0.035) NULL ARID1A 8289 genome.wustl.edu 37 1 27087961 27087961 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006015.4 +1 reviewed p.R750* 1.000 158 0% 70 41.4% 1 100% - - - NULL ARID1A 8289 genome.wustl.edu 37 1 27088642 27088642 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006015.4 +1 reviewed e7-1 1.000 181 0% 83 20.5% 0 - - - - - ARID1A 8289 genome.wustl.edu 37 1 27106730 27106730 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006015.4 +1 reviewed p.P2114L 1.000 141 0% 115 20% 36 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PIGV 55650 genome.wustl.edu 37 1 27121202 27121202 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017837.2 +1 validated p.T226M 0.000 350 0% 304 24.3% 15 26.6% benign(0.001) tolerated(0.14) neutral(0.249) HMMPfam_Mannosyl_trans2 PIGV 55650 genome.wustl.edu 37 1 27121314 27121314 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017837.2 +1 validated p.F263L 1.000 400 0% 381 20.7% 16 56.2% unknown(0) - - HMMPfam_Mannosyl_trans2 PIGV 55650 genome.wustl.edu 37 1 27121534 27121534 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017837.2 +1 validated p.L337M 0.862 266 0% 257 25.3% 21 47.6% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_Mannosyl_trans2 C1orf172 126695 genome.wustl.edu 37 1 27278033 27278033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152365.2 -1 validated p.S280N 1.000 56 0% 56 12.5% 43 23.2% benign(0.011) tolerated(1) neutral(0.001) NULL C1orf172 126695 genome.wustl.edu 37 1 27278190 27278190 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152365.2 -1 validated p.E228K 1.000 41 0% 31 16.1% 34 64.7% probably_damaging(0.99) tolerated(0.14) deleterious(0.691) NULL C1orf172 126695 genome.wustl.edu 37 1 27278240 27278240 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152365.2 -1 validated p.R211H 0.967 65 0% 38 15.8% 23 52.1% probably_damaging(0.999) tolerated(0.17) deleterious(0.549) NULL LOC646567 646567 genome.wustl.edu 37 1 27312528 27312528 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_929503.3 -1 model p.L102M 1.000 336 0.3% 237 23.2% 0 - - - - HMMPfam_DUF2055 SLC9A1 6548 genome.wustl.edu 37 1 27429041 27429041 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003047.3 -1 validated p.R552Q 1.000 57 0% 61 19.7% 25 28% probably_damaging(1) tolerated(0.19) deleterious(0.549) NULL WDTC1 23038 genome.wustl.edu 37 1 27620555 27620555 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015023.3 +1 validated p.F235 1.000 101 0% 124 25.8% 40 35% - - - superfamily_WD40 repeat-like WDTC1 23038 genome.wustl.edu 37 1 27621038 27621038 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015023.3 +1 validated p.N264S 1.000 144 0% 146 16.4% 37 10.8% benign(0.062) tolerated(0.66) neutral(0.007) superfamily_WD40 repeat-like WDTC1 23038 genome.wustl.edu 37 1 27623580 27623580 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015023.3 +1 validated p.G330S 0.179 196 0% 203 22.2% 23 47.8% possibly_damaging(0.586) tolerated(0.18) neutral(0.258) superfamily_WD40 repeat-like MAP3K6 9064 genome.wustl.edu 37 1 27685358 27685358 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004672.3 -1 reviewed e19-1 1.000 34 0% 50 16% 0 - - - - - AHDC1 27245 genome.wustl.edu 37 1 27876868 27876868 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029882.2 -1 validated p.R587* 0.959 47 0% 58 31% 4 25% - - - NULL AHDC1 27245 genome.wustl.edu 37 1 27878213 27878213 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029882.2 -1 validated p.L138 1.000 71 0% 47 21.3% 7 42.8% - - - NULL PTAFR 5724 genome.wustl.edu 37 1 28477017 28477017 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000952.4 -1 validated p.R172 0.849 224 0% 99 10.1% 14 14.2% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like RCC1 1104 genome.wustl.edu 37 1 28858743 28858743 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048194.1 +1 validated p.S139T 1.000 176 0% 158 25.9% 117 35% benign(0.074) tolerated(0.11) neutral(0.277) HMMPfam_RCC1,superfamily_RCC1/BLIP-II RCC1 1104 genome.wustl.edu 37 1 28862489 28862489 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048194.1 +1 validated p.S287 0.191 269 0.4% 216 19.9% 187 57.2% - - - superfamily_RCC1/BLIP-II RCC1 1104 genome.wustl.edu 37 1 28863273 28863273 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048194.1 +1 validated p.L349 1.000 175 0% 149 21.5% 146 56.8% - - - HMMPfam_RCC1,superfamily_RCC1/BLIP-II GMEB1 10691 genome.wustl.edu 37 1 29040931 29040931 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006582.2 +1 reviewed p.K456 1.000 215 0% 85 23.5% 20 20% - - - NULL YTHDF2 51441 genome.wustl.edu 37 1 29069972 29069972 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016258.2 +1 reviewed p.N397I 1.000 234 0% 166 21.1% 78 44.8% probably_damaging(0.98) deleterious(0.02) deleterious(0.807) NULL PTPRU 10076 genome.wustl.edu 37 1 29609198 29609198 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005704.3 +1 reviewed p.V627L 1.000 80 0% 47 10.6% 0 - benign(0.035) tolerated(0.56) neutral(0.009) NULL PTPRU 10076 genome.wustl.edu 37 1 29644321 29644321 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005704.3 +1 reviewed p.R1202Q 1.000 81 0% 69 27.5% 2 0% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II LOC100288450 100288450 genome.wustl.edu 37 1 29814802 29814802 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342037.1 -1 model p.M81T 0.985 45 0% 17 23.5% 0 - - - - NULL LAPTM5 7805 genome.wustl.edu 37 1 31206701 31206701 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006762.2 -1 reviewed p.A255S 0.007 78 0% 61 16.4% 244 0% probably_damaging(0.954) deleterious(0.04) deleterious(0.746) HMMPfam_Mtp LOC100288670 100288670 genome.wustl.edu 37 1 31347438 31347438 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342056.1 +1 model p.C76Y 0.990 81 0% 115 27% 0 - - - - NULL ZCCHC17 51538 genome.wustl.edu 37 1 31837019 31837019 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016505.2 +1 provisional p.H235 0.998 245 0% 107 28% 50 54% - - - NULL SERINC2 347735 genome.wustl.edu 37 1 31899625 31899625 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178865.3 +1 validated p.T245 0.010 153 0% 147 19% 313 52% - - - HMMPfam_Serinc SPOCD1 90853 genome.wustl.edu 37 1 32258345 32258345 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452755 -1 known p.R263Q 0.995 36 0% 25 32% 0 - - - - HMMPfam_SPOC SPOCD1 90853 genome.wustl.edu 37 1 32266091 32266091 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144569.4 -1 provisional p.R518K 0.007 95 0% 87 14.9% 0 - unknown(0) - - NULL DCDC2B 149069 genome.wustl.edu 37 1 32676882 32676882 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099434.1 +1 validated p.P92 0.001 202 0.5% 153 18.3% 0 - - - - superfamily_Doublecortin (DC) DCDC2B 149069 genome.wustl.edu 37 1 32680484 32680484 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099434.1 +1 validated p.Q267H 0.001 183 0% 162 21.6% 5 20% possibly_damaging(0.835) tolerated(0.07) deleterious(0.637) NULL LCK 3932 genome.wustl.edu 37 1 32751259 32751259 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042771.1 +1 reviewed p.R491H 0.997 92 0% 82 20.7% 100 0% possibly_damaging(0.489) tolerated(0.38) neutral(0.180) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) HDAC1 3065 genome.wustl.edu 37 1 32796462 32796462 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004964.2 +1 reviewed p.C311Y 1.000 255 0% 308 21.4% 276 45.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase MARCKSL1 65108 genome.wustl.edu 37 1 32800466 32800466 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023009.5 -1 validated p.R107I 1.000 44 0% 87 23% 228 37.2% probably_damaging(0.981) deleterious(0.01) deleterious(0.831) PatternScan_MARCKS_2 TSSK3 81629 genome.wustl.edu 37 1 32829266 32829266 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052841.3 +1 reviewed p.Q72H 0.963 186 0% 235 21.3% 5 80% benign(0) tolerated(0.43) neutral(0.013) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase BSDC1 55108 genome.wustl.edu 37 1 32849627 32849627 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143888.1 -1 validated p.A71D 0.001 183 0% 122 14.8% 2 50% benign(0.006) tolerated(0.14) neutral(0.249) NULL ZBTB8B 728116 genome.wustl.edu 37 1 32936820 32936820 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145720.1 +1 provisional p.D199Y 0.962 65 0% 91 20.9% 0 - benign(0.035) deleterious(0.03) neutral(0.366) NULL ZBTB8A 653121 genome.wustl.edu 37 1 33058634 33058634 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040441.1 +1 validated p.V34 1.000 245 0% 144 14.6% 3 66.6% - - - HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB ZBTB8A 653121 genome.wustl.edu 37 1 33065937 33065937 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040441.1 +1 validated p.D415N 1.000 458 0% 289 21.8% 6 33.3% possibly_damaging(0.948) tolerated(0.07) deleterious(0.710) NULL ZBTB8OS 339487 genome.wustl.edu 37 1 33099712 33099712 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000465588 -1 known NULL 0.000 175 0% 81 23.5% 0 - - - - - RBBP4 5928 genome.wustl.edu 37 1 33138465 33138465 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005610.2 +1 reviewed p.S392F 1.000 630 0% 356 21.6% 101 31.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 SYNC 81493 genome.wustl.edu 37 1 33161474 33161474 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030786.2 -1 reviewed p.E75D 0.332 378 0% 368 23.1% 0 - possibly_damaging(0.942) deleterious(0) deleterious(0.832) NULL KIAA1522 57648 genome.wustl.edu 37 1 33236129 33236129 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020888.2 +1 validated p.S450N 0.000 43 0% 40 30% 44 54.5% benign(0.019) tolerated(0.37) neutral(0.020) NULL KIAA1522 57648 genome.wustl.edu 37 1 33237915 33237915 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020888.2 +1 validated p.E1045 0.713 29 0% 28 21.4% 53 49% - - - NULL YARS 8565 genome.wustl.edu 37 1 33276554 33276554 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003680.3 -1 reviewed p.V54 1.000 691 0% 619 23.4% 75 45.3% - - - HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase PHC2 1912 genome.wustl.edu 37 1 33833030 33833030 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198040.2 -1 reviewed e6-1 1.000 290 0% 283 23.7% 0 - - - - - ZSCAN20 7579 genome.wustl.edu 37 1 33956980 33956980 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145238.3 +1 validated p.E374D 1.000 75 0% 38 18.4% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMSmart_SM00717 ZSCAN20 7579 genome.wustl.edu 37 1 33960263 33960263 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145238.3 +1 validated p.K773N 0.537 212 0% 112 21.4% 3 66.6% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CSMD2 114784 genome.wustl.edu 37 1 34006832 34006832 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052896.3 -1 validated p.T2975A 0.996 256 0% 165 25.5% 0 - benign(0.019) tolerated(0.21) neutral(0.045) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD2 114784 genome.wustl.edu 37 1 34209203 34209203 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052896.3 -1 validated p.S577 1.000 103 0% 62 12.9% 0 - - - - superfamily_Spermadhesin CUB domain GJB5 2709 genome.wustl.edu 37 1 35223201 35223201 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005268.2 +1 provisional p.L90 0.858 159 0% 113 21.2% 1 0% - - - HMMPfam_Connexin GJB4 127534 genome.wustl.edu 37 1 35226861 35226861 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153212.2 +1 reviewed p.N2K 1.000 175 0% 146 21.2% 0 - probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_Connexin GJB3 2707 genome.wustl.edu 37 1 35250488 35250488 + Missense_Mutation SNP G G A rs74315321 byCluster TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005752.1 +1 reviewed p.R42H 0.959 313 0% 289 26.3% 7 42.8% benign(0.317) tolerated(0.22) neutral(0.141) HMMPfam_Connexin,HMMSmart_SM00037 DLGAP3 58512 genome.wustl.edu 37 1 35350630 35350630 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080418.1 -1 provisional p.R650M 1.000 242 0% 340 23.2% 0 - possibly_damaging(0.926) deleterious(0.03) deleterious(0.739) HMMPfam_GKAP DLGAP3 58512 genome.wustl.edu 37 1 35351703 35351703 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080418.1 -1 provisional p.P524T 1.000 26 0% 29 17.2% 0 - benign(0.073) tolerated(0.35) neutral(0.026) NULL ZMYM1 79830 genome.wustl.edu 37 1 35578701 35578701 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024772.3 +1 validated p.Q424* 0.002 210 0% 148 23% 2 50% - - - NULL ZMYM1 79830 genome.wustl.edu 37 1 35579239 35579239 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024772.3 +1 validated p.R603Q 0.018 79 0% 73 20.5% 2 50% possibly_damaging(0.471) tolerated(0.65) neutral(0.159) NULL SFPQ 6421 genome.wustl.edu 37 1 35650117 35650117 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005066.2 -1 validated p.P688 1.000 383 0% 429 17.7% 436 45.4% - - - NULL SFPQ 6421 genome.wustl.edu 37 1 35654618 35654618 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005066.2 -1 validated p.K561N 1.000 1051 0.1% 984 22.6% 592 43.4% probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_RNA-binding domain RBD ZMYM4 9202 genome.wustl.edu 37 1 35846970 35846970 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005095.2 +1 validated p.P431H 1.000 322 0% 241 23.7% 1 100% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL KIAA0319L 79932 genome.wustl.edu 37 1 35909858 35909858 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024874.4 -1 reviewed p.F854V 1.000 206 0% 79 11.4% 41 39% benign(0.282) tolerated(0.18) neutral(0.142) NULL NCDN 23154 genome.wustl.edu 37 1 36025980 36025980 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014839.1 +1 reviewed p.I76 1.000 113 0% 107 26.2% 10 30% - - - HMMPfam_Neurochondrin EIF2C3 192669 genome.wustl.edu 37 1 36499873 36499873 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024852.2 +1 reviewed p.L564 1.000 240 0% 162 17.9% 2 50% - - - HMMPfam_Piwi,superfamily_RNaseH_fold ADPRHL2 54936 genome.wustl.edu 37 1 36557405 36557405 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017825.2 +1 reviewed p.S165 0.113 141 0% 165 20.6% 69 46.3% - - - HMMPfam_ADP_ribosyl_GH,superfamily_Ribosyl_crysJ1 STK40 83931 genome.wustl.edu 37 1 36807401 36807401 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032017.1 -1 provisional p.T421 1.000 35 0% 34 20.6% 25 32% - - - NULL ZC3H12A 80149 genome.wustl.edu 37 1 37945972 37945972 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025079.2 +1 validated p.I175 1.000 85 0% 105 27.6% 15 33.3% - - - NULL ZC3H12A 80149 genome.wustl.edu 37 1 37948351 37948351 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025079.2 +1 validated p.T313 0.248 75 0% 80 16.3% 17 35.2% - - - NULL GNL2 29889 genome.wustl.edu 37 1 38058382 38058382 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013285.2 -1 validated p.P59S 1.000 427 0% 505 20.4% 21 33.3% benign(0.111) tolerated(0.06) neutral(0.331) HMMPfam_NGP1NT RSPO1 284654 genome.wustl.edu 37 1 38082288 38082288 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001038633.2 -1 reviewed p.G52S 1.000 38 0% 37 18.9% 3 0% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMSmart_SM00261,superfamily_Growth factor receptor domain C1orf109 54955 genome.wustl.edu 37 1 38151945 38151945 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017850.1 -1 predicted p.S152L 0.122 164 0.6% 99 23.2% 17 76.4% benign(0.001) tolerated(1) - NULL INPP5B 3633 genome.wustl.edu 37 1 38331553 38331553 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005540.2 -1 reviewed p.S798 1.000 168 0% 115 20% 14 28.5% - - - HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP INPP5B 3633 genome.wustl.edu 37 1 38406451 38406451 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005540.2 -1 reviewed p.Q100H 1.000 239 0% 215 22.3% 0 - probably_damaging(0.977) deleterious(0) deleterious(0.863) PatternScan_LECTIN_LEGUME_BETA UTP11L 51118 genome.wustl.edu 37 1 38488394 38488394 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016037.3 +1 validated p.K197N 0.977 403 0% 277 24.9% 74 39.1% benign(0) tolerated(0.26) neutral(0.034) HMMPfam_Utp11 MYCBP 26292 genome.wustl.edu 37 1 39333233 39333233 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012333.3 -1 validated e3+1 1.000 241 0% 322 23% 0 - - - - - MYCBP 26292 genome.wustl.edu 37 1 39338759 39338759 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012333.3 -1 validated p.A7T 1.000 30 0% 43 25.6% 34 44.1% possibly_damaging(0.811) tolerated(0.6) neutral(0.310) NULL GJA9 81025 genome.wustl.edu 37 1 39341427 39341427 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030772.3 -1 provisional p.R115I 0.985 438 0% 398 19.1% 4 100% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_Connexin MACF1 23499 genome.wustl.edu 37 1 39719992 39719992 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012090.3 +1 reviewed p.R132H 1.000 248 0% 172 22.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain MACF1 23499 genome.wustl.edu 37 1 39750068 39750068 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012090.3 +1 reviewed p.G372* 1.000 260 0% 108 25.9% 1 0% - - - superfamily_Spectrin repeat MACF1 23499 genome.wustl.edu 37 1 39757632 39757632 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012090.3 +1 reviewed p.L617 0.157 216 0.5% 88 33% 0 - - - - HMMSmart_SM00150,superfamily_Spectrin repeat MACF1 23499 genome.wustl.edu 37 1 39790350 39790350 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000372925 +1 known p.T613A 0.973 194 0% 66 33.3% 0 - - - - HMMSmart_SM00150,superfamily_Spectrin repeat MACF1 23499 genome.wustl.edu 37 1 39798241 39798241 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033044.2 +1 reviewed p.S434F 0.022 231 0% 65 16.9% 0 - possibly_damaging(0.708) - - NULL MACF1 23499 genome.wustl.edu 37 1 39835720 39835720 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033044.2 +1 reviewed p.S2759 1.000 255 0% 154 31.8% 1 0% - - - superfamily_Spectrin MACF1 23499 genome.wustl.edu 37 1 39851485 39851485 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033044.2 +1 reviewed p.A3183D 1.000 213 0% 84 10.7% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SPEC,superfamily_Spectrin MACF1 23499 genome.wustl.edu 37 1 39853257 39853257 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033044.2 +1 reviewed p.L3355I 1.000 114 0% 62 12.9% 5 40% possibly_damaging(0.942) tolerated(0.18) neutral(0.443) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin KIAA0754 643314 genome.wustl.edu 37 1 39876933 39876933 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015038.1 +1 predicted p.A332 1.000 454 0% 379 12.1% 0 - - - - NULL HEYL 26508 genome.wustl.edu 37 1 40092620 40092620 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014571.3 -1 reviewed p.S182R 0.979 140 0% 85 31.8% 4 0% probably_damaging(0.965) tolerated(0.24) neutral(0.444) NULL NT5C1A 84618 genome.wustl.edu 37 1 40131311 40131311 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032526.1 -1 provisional p.A105 0.901 125 0% 98 32.7% 0 - - - - HMMPfam_5-nucleotidase CAP1 10487 genome.wustl.edu 37 1 40535837 40535837 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105530.1 +1 reviewed p.Q334* 1.000 180 0% 67 16.4% 124 0% - - - HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein CAP1 10487 genome.wustl.edu 37 1 40535914 40535914 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105530.1 +1 reviewed p.T359 0.995 260 0% 82 24.4% 152 45.3% - - - HMMSmart_SM00673,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein RLF 6018 genome.wustl.edu 37 1 40705973 40705973 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012421.3 +1 validated p.A1867S 1.000 386 0.3% 135 21.5% 25 24% probably_damaging(0.999) tolerated(0.21) deleterious(0.534) NULL TMCO2 127391 genome.wustl.edu 37 1 40713882 40713882 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008740.3 +1 validated p.R73* 1.000 338 0% 188 23.4% 0 - - - - NULL ZNF642 339559 genome.wustl.edu 37 1 40961084 40961084 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198494.2 +1 validated p.A312T 0.986 207 0% 155 22.6% 2 0% possibly_damaging(0.938) tolerated(0.11) deleterious(0.655) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 DEM1 64789 genome.wustl.edu 37 1 40980498 40980498 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022774.1 +1 provisional p.L94 1.000 179 0% 142 19.7% 7 14.2% - - - HMMPfam_Morph_protein1 RIMS3 9783 genome.wustl.edu 37 1 41101633 41101633 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014747.2 -1 validated p.R105Q 1.000 39 0% 43 30.2% 0 - possibly_damaging(0.756) tolerated(0.16) neutral(0.339) NULL CTPS 1503 genome.wustl.edu 37 1 41454365 41454365 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001905.2 +1 validated p.V180I 1.000 287 0% 193 19.2% 14 14.2% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_CTP_synth_N,superfamily_SSF52540 CTPS 1503 genome.wustl.edu 37 1 41466714 41466714 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001905.2 +1 validated p.A340V 0.775 150 0% 112 24.1% 26 38.4% benign(0) tolerated(0.11) neutral(0.272) HMMPfam_GATase,superfamily_SSF52317 SLFNL1 200172 genome.wustl.edu 37 1 41485975 41485975 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144990.3 -1 validated p.L120I 0.004 38 0% 38 28.9% 0 - benign(0.026) tolerated(0.14) neutral(0.251) NULL SCMH1 22955 genome.wustl.edu 37 1 41536328 41536328 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031694.2 -1 validated p.D338 0.966 688 0% 261 24.9% 26 30.7% - - - NULL FOXJ3 22887 genome.wustl.edu 37 1 42660606 42660606 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014947.3 -1 validated p.R297W 1.000 447 0% 306 22.9% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RIMKLA 284716 genome.wustl.edu 37 1 42880415 42880415 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173642.3 +1 validated p.G316* 0.997 198 0% 43 37.2% 1 0% - - - NULL RIMKLA 284716 genome.wustl.edu 37 1 42880423 42880423 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173642.3 +1 validated p.S318 0.934 183 0% 40 20% 1 0% - - - NULL ZMYND12 84217 genome.wustl.edu 37 1 42896448 42896448 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032257.4 -1 validated p.L353 0.008 633 0% 280 21.1% 0 - - - - NULL ZMYND12 84217 genome.wustl.edu 37 1 42896449 42896449 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032257.4 -1 validated p.E352D 0.005 665 0% 285 20.7% 0 - benign(0) tolerated(0.34) neutral(0.023) NULL ZMYND12 84217 genome.wustl.edu 37 1 42915613 42915613 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433602 -1 known p.P24T 0.998 83 0% 81 14.8% 0 - unknown(0) tolerated(0.05) - superfamily_TPR-like YBX1 4904 genome.wustl.edu 37 1 43166546 43166546 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004559.3 +1 validated p.R279C 1.000 77 0% 52 28.8% 1338 37.4% benign(0.006) deleterious(0.04) neutral(0.349) NULL CLDN19 149461 genome.wustl.edu 37 1 43205521 43205521 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148960.2 -1 reviewed p.A72T 1.000 24 0% 30 26.7% 1 100% benign(0.115) deleterious(0.02) neutral(0.392) HMMPfam_PMP22_Claudin LEPRE1 64175 genome.wustl.edu 37 1 43212666 43212666 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000236040 -1 known p.F778L 0.000 198 0% 273 20.9% 0 - unknown(0) - - NULL LEPRE1 64175 genome.wustl.edu 37 1 43212758 43212758 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000236040 -1 known p.A747D 0.012 248 0.4% 383 13.8% 1 100% unknown(0) - - NULL ZNF691 51058 genome.wustl.edu 37 1 43316968 43316968 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015911.2 +1 provisional p.K113N 1.000 105 0% 59 23.7% 8 50% benign(0.296) deleterious(0.05) neutral(0.437) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF691 51058 genome.wustl.edu 37 1 43317156 43317156 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015911.2 +1 provisional p.S176N 1.000 52 0% 39 17.9% 19 52.6% possibly_damaging(0.853) deleterious(0.03) deleterious(0.693) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 EBNA1BP2 10969 genome.wustl.edu 37 1 43630122 43630122 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006824.2 -1 validated p.T305P 0.000 642 0% 426 17.6% 180 48.8% benign(0) tolerated(0.19) neutral(0.050) NULL TIE1 7075 genome.wustl.edu 37 1 43775080 43775080 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005424.2 +1 provisional p.P404S 0.924 267 0% 363 22.9% 8 0% benign(0) tolerated(0.41) neutral(0.015) HMMPfam_ig,superfamily_SSF48726 TIE1 7075 genome.wustl.edu 37 1 43775181 43775181 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005424.2 +1 provisional p.R437 0.947 208 0% 200 23% 7 14.2% - - - superfamily_FN_III-like,superfamily_SSF48726 TIE1 7075 genome.wustl.edu 37 1 43777992 43777992 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005424.2 +1 provisional p.P549 0.037 41 0% 48 31.2% 15 13.3% - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like MPL 4352 genome.wustl.edu 37 1 43803581 43803581 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005373.2 +1 reviewed p.A21V 0.998 65 0% 71 12.7% 0 - benign(0.01) tolerated(0.3) neutral(0.029) superfamily_Fibronectin type III CDC20 991 genome.wustl.edu 37 1 43827938 43827938 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001255.2 +1 reviewed p.V426F 1.000 219 0% 221 17.6% 323 38.3% probably_damaging(0.968) deleterious(0.01) deleterious(0.816) HMMSmart_WD40,superfamily_WD40_like ELOVL1 64834 genome.wustl.edu 37 1 43830292 43830292 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022821.2 -1 validated p.D134 0.288 263 0% 340 24.1% 110 40.9% - - - HMMPfam_ELO MED8 112950 genome.wustl.edu 37 1 43851783 43851783 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052877.3 -1 reviewed p.G203V 1.000 117 0% 95 17.9% 86 36% benign(0) tolerated(0.42) neutral(0.014) HMMPfam_Arc32 SZT2 23334 genome.wustl.edu 37 1 43902883 43902883 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015284.2 +1 predicted p.A1127T 1.000 174 0% 145 26.2% 2 50% probably_damaging(1) tolerated(0.12) deleterious(0.760) NULL HYI 81888 genome.wustl.edu 37 1 43917893 43917893 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031207.3 -1 validated p.A64T 1.000 301 0% 459 10.7% 49 38.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_AP_endonuc_2,superfamily_Xyl_isomerase-like_TIM-brl PTPRF 5792 genome.wustl.edu 37 1 44019191 44019191 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002840.3 +1 reviewed p.E40 0.998 252 0% 176 23.9% 5 20% - - - HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin PTPRF 5792 genome.wustl.edu 37 1 44057531 44057531 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429895 +1 known p.G184* 1.000 45 0% 41 22% 15 53.3% benign(0.198) deleterious(0.02) neutral(0.402) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRF 5792 genome.wustl.edu 37 1 44069101 44069101 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429895 +1 known p.A433V 0.935 74 0% 71 22.5% 29 55.1% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRF 5792 genome.wustl.edu 37 1 44070882 44070882 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002840.3 +1 reviewed p.V1053M 1.000 29 0% 31 16.1% 44 25% benign(0.011) tolerated(0.07) neutral(0.320) HMMSmart_SM00060,superfamily_Fibronectin type III PTPRF 5792 genome.wustl.edu 37 1 44075093 44075093 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429895 +1 known p.R945Q 0.001 160 0% 148 20.3% 37 56.7% - - - NULL ST3GAL3 6487 genome.wustl.edu 37 1 44290452 44290452 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174963.2 +1 reviewed p.E102* 0.320 284 0% 95 22.1% 0 - - - - NULL ST3GAL3 6487 genome.wustl.edu 37 1 44364887 44364887 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174963.2 +1 reviewed p.A239V 1.000 225 0% 114 21.1% 6 50% possibly_damaging(0.808) tolerated(0.51) neutral(0.313) HMMPfam_Glyco_transf_29 ST3GAL3 6487 genome.wustl.edu 37 1 44395806 44395806 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174965.1 +1 reviewed p.L149M 0.988 116 0% 131 19.8% 5 20% possibly_damaging(0.906) - - NULL IPO13 9670 genome.wustl.edu 37 1 44432395 44432395 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014652.3 +1 reviewed e17-1 1.000 360 0% 323 26.9% 0 - - - - - KLF17 128209 genome.wustl.edu 37 1 44595359 44595359 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173484.3 +1 validated p.N139I 0.000 89 0% 52 36.5% 0 - possibly_damaging(0.92) deleterious(0.01) deleterious(0.776) NULL PTCH2 8643 genome.wustl.edu 37 1 45293863 45293863 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003738.4 -1 reviewed p.S570 1.000 107 0% 107 12.1% 2 0% - - - HMMPfam_Patched PTCH2 8643 genome.wustl.edu 37 1 45294240 45294240 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003738.4 -1 reviewed p.M510L 1.000 94 0% 94 20.2% 0 - benign(0.007) tolerated(0.19) neutral(0.050) HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain EIF2B3 8891 genome.wustl.edu 37 1 45340446 45340446 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020365.3 -1 reviewed p.S369F 1.000 373 0% 363 20.1% 68 41.1% probably_damaging(0.988) deleterious(0) deleterious(0.882) superfamily_Trimeric LpxA-like enzymes,superfamily_Nucleotide-diphospho-sugar transferases UROD 7389 genome.wustl.edu 37 1 45479413 45479413 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000374.3 +1 reviewed p.R142* 1.000 188 0% 224 19.6% 120 5.8% - - - HMMPfam_URO-D,superfamily_UROD/MetE-like ZSWIM5 57643 genome.wustl.edu 37 1 45553602 45553602 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020883.1 -1 validated p.K301N 1.000 632 0.2% 399 23.8% 0 - possibly_damaging(0.893) deleterious(0.02) deleterious(0.735) NULL TOE1 114034 genome.wustl.edu 37 1 45808273 45808273 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025077.3 +1 validated p.A237V 0.998 92 0% 127 23.6% 29 51.7% benign(0) tolerated(0.93) - HMMPfam_CAF1 TOE1 114034 genome.wustl.edu 37 1 45808595 45808595 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025077.3 +1 validated p.R278M 0.262 106 0% 92 21.7% 56 58.9% possibly_damaging(0.44) tolerated(0.08) neutral(0.444) HMMPfam_CAF1 TOE1 114034 genome.wustl.edu 37 1 45809130 45809130 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025077.3 +1 validated p.N430T 0.003 210 0% 154 25.3% 72 59.7% benign(0.032) tolerated(0.89) neutral(0.002) HMMPfam_CAF1 AKR1A1 10327 genome.wustl.edu 37 1 46035610 46035610 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006066.2 +1 reviewed p.P320 0.794 150 0% 96 19.8% 436 36.4% - - - superfamily_NAD(P)-linked oxidoreductase CCDC17 149483 genome.wustl.edu 37 1 46088501 46088501 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114938.1 -1 provisional p.P189L 0.000 24 0% 40 32.5% 0 - benign(0) tolerated(0.25) neutral(0.037) NULL CCDC17 149483 genome.wustl.edu 37 1 46088898 46088898 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114938.1 -1 provisional p.R130C 0.036 17 0% 21 23.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL GPBP1L1 60313 genome.wustl.edu 37 1 46120974 46120974 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021639.4 -1 validated p.F26 1.000 330 0% 103 31.1% 58 37.9% - - - NULL IPP 3652 genome.wustl.edu 37 1 46165666 46165666 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005897.2 -1 reviewed p.R576H 1.000 377 0.3% 162 24.1% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00612,superfamily_Galactose oxidase central domain IPP 3652 genome.wustl.edu 37 1 46211964 46211964 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005897.2 -1 reviewed p.Q40H 1.000 330 0.3% 428 15.2% 6 0% benign(0.219) deleterious(0.02) neutral(0.405) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB PIK3R3 8503 genome.wustl.edu 37 1 46511694 46511694 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114172.1 -1 validated p.E361 1.000 468 0% 241 16.2% 7 42.8% - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain POMGNT1 55624 genome.wustl.edu 37 1 46655228 46655228 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017739.3 -1 reviewed p.I599 1.000 109 0% 118 25.4% 56 35.7% - - - superfamily_Nucleotide-diphospho-sugar transferases POMGNT1 55624 genome.wustl.edu 37 1 46660582 46660582 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017739.3 -1 reviewed p.L196M 1.000 41 0% 88 25% 35 51.4% probably_damaging(0.982) tolerated(0.08) deleterious(0.726) NULL POMGNT1 55624 genome.wustl.edu 37 1 46661577 46661577 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017739.3 -1 reviewed p.R147H 1.000 206 0% 221 24% 39 48.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL POMGNT1 55624 genome.wustl.edu 37 1 46662646 46662646 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017739.3 -1 reviewed p.D77E 1.000 257 0% 304 14.8% 25 20% benign(0.01) tolerated(0.24) neutral(0.038) NULL RAD54L 8438 genome.wustl.edu 37 1 46738374 46738374 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142548.1 +1 reviewed p.K425 0.997 371 0% 203 16.3% 8 75% - - - HMMPfam_SNF2_N,superfamily_SSF52540 RAD54L 8438 genome.wustl.edu 37 1 46739888 46739888 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142548.1 +1 reviewed p.S563 0.999 379 0% 255 19.6% 10 0% - - - HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 KIAA0494 9813 genome.wustl.edu 37 1 47144290 47144290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014774.2 -1 validated p.R444H 0.729 173 0% 139 10.8% 27 3.7% benign(0) tolerated(0.81) neutral(0.001) NULL CYP4B1 1580 genome.wustl.edu 37 1 47264872 47264872 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099772.1 +1 reviewed p.A40V 0.102 185 0% 64 17.2% 0 - benign(0.012) tolerated(0.53) neutral(0.008) NULL CYP4A11 1579 genome.wustl.edu 37 1 47401278 47401278 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000778.3 -1 reviewed p.E184D 0.945 363 0% 155 21.3% 0 - benign(0.155) tolerated(0.72) neutral(0.015) HMMPfam_p450,superfamily_Cytochrome P450 PDZK1IP1 10158 genome.wustl.edu 37 1 47650691 47650691 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005764.3 -1 validated p.S85 0.026 209 0% 127 24.4% 715 48.9% - - - NULL AGBL4 84871 genome.wustl.edu 37 1 49005390 49005390 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032785.3 -1 validated p.V430M 0.998 286 0% 67 25.4% 0 - possibly_damaging(0.701) tolerated(0.47) neutral(0.263) superfamily_Zn-dependent exopeptidases BEND5 79656 genome.wustl.edu 37 1 49193704 49193704 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024603.2 -1 validated p.D374N 1.000 577 0% 148 25% 4 50% probably_damaging(0.959) tolerated(0.09) deleterious(0.699) HMMPfam_BEN ELAVL4 1996 genome.wustl.edu 37 1 50661235 50661235 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144775.1 +1 validated p.V188M 1.000 145 0% 58 22.4% 0 - benign(0) tolerated(0.05) neutral(0.345) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 RNF11 26994 genome.wustl.edu 37 1 51735673 51735673 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014372.4 +1 reviewed p.R57W 1.000 141 0% 73 19.2% 26 30.7% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL RNF11 26994 genome.wustl.edu 37 1 51735742 51735742 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014372.4 +1 reviewed p.L80M 1.000 147 0% 89 23.6% 20 30% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TTC39A 22996 genome.wustl.edu 37 1 51787798 51787798 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080494.2 -1 validated p.P12 0.011 145 0% 130 21.5% 0 - - - - NULL OSBPL9 114883 genome.wustl.edu 37 1 52238365 52238365 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000447887 +1 known p.A397T 0.287 490 0.2% 298 23.5% 30 43.3% - - - HMMPfam_Oxysterol_BP NRD1 4898 genome.wustl.edu 37 1 52272567 52272567 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002525.2 -1 validated p.K738T 1.000 406 0% 216 10.6% 68 33.8% benign(0.054) tolerated(0.34) neutral(0.026) NULL ZFYVE9 9372 genome.wustl.edu 37 1 52704629 52704629 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004799.2 +1 reviewed p.E514* 1.000 165 0% 47 25.5% 4 25% - - - NULL CC2D1B 200014 genome.wustl.edu 37 1 52827190 52827190 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032449.1 -1 validated p.L105M 1.000 69 0% 115 15.7% 12 25% possibly_damaging(0.634) deleterious(0) deleterious(0.666) NULL PRPF38A 84950 genome.wustl.edu 37 1 52878212 52878212 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032864.3 +1 validated p.E175 1.000 363 0% 198 21.7% 71 45% - - - HMMPfam_PRP38 ZCCHC11 23318 genome.wustl.edu 37 1 52891057 52891057 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009881.1 -1 validated p.A1612T 1.000 313 0% 127 19.7% 21 38% possibly_damaging(0.527) tolerated(0.18) neutral(0.234) NULL ZCCHC11 23318 genome.wustl.edu 37 1 52943484 52943484 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009881.1 -1 validated p.Y640C 1.000 286 0% 187 17.6% 9 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain FAM159A 348378 genome.wustl.edu 37 1 53108639 53108639 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042693.1 +1 validated p.T96I 0.635 434 0% 270 24.8% 1 0% possibly_damaging(0.918) deleterious(0.01) deleterious(0.774) NULL ZYG11B 79699 genome.wustl.edu 37 1 53237065 53237065 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024646.2 +1 validated p.S190R 1.000 155 0% 83 12% 4 50% probably_damaging(0.997) tolerated(0.08) deleterious(0.766) superfamily_ARM repeat,superfamily_RNI-like SCP2 6342 genome.wustl.edu 37 1 53416451 53416451 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002979.3 +1 reviewed p.A75V 1.000 445 0% 226 11.9% 20 40% benign(0.015) tolerated(0.11) neutral(0.272) HMMPfam_Thiolase_N,superfamily_Thiolase-like PODN 127435 genome.wustl.edu 37 1 53543463 53543463 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153703.3 +1 validated p.E330A 1.000 106 0% 86 30.2% 1 0% benign(0.176) tolerated(0.7) neutral(0.018) HMMPfam_LRR_1,superfamily_SSF52047,superfamily_SSF52058 PODN 127435 genome.wustl.edu 37 1 53546466 53546466 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153703.3 +1 validated p.L575M 1.000 96 0% 92 13% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRR_1,superfamily_SSF52047 PODN 127435 genome.wustl.edu 37 1 53547755 53547755 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153703.3 +1 validated p.I636M 0.622 156 0% 131 18.3% 1 0% benign(0.07) deleterious(0.04) neutral(0.354) superfamily_SSF52047 SLC1A7 6512 genome.wustl.edu 37 1 53556426 53556426 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006671.4 -1 validated p.D362N 1.000 100 0% 112 27.7% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_SDF SLC1A7 6512 genome.wustl.edu 37 1 53559205 53559205 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006671.4 -1 validated p.S242I 0.998 34 0% 31 19.4% 0 - possibly_damaging(0.782) deleterious(0.03) deleterious(0.657) HMMPfam_SDF CPT2 1376 genome.wustl.edu 37 1 53676775 53676775 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000098.2 +1 reviewed p.R477W 0.992 106 0% 51 15.7% 44 47.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases LRP8 7804 genome.wustl.edu 37 1 53732180 53732180 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004631.3 -1 reviewed p.I464 1.000 214 0% 165 13.9% 5 20% - - - HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain DMRTB1 63948 genome.wustl.edu 37 1 53930490 53930490 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033067.1 +1 provisional p.V311I 0.014 328 0% 374 16.6% 0 - benign(0.001) tolerated(0.75) neutral(0.002) NULL GLIS1 148979 genome.wustl.edu 37 1 53990492 53990492 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147193.2 -1 validated p.H342 0.955 349 0% 283 19.8% 3 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 LDLRAD1 388633 genome.wustl.edu 37 1 54476073 54476073 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010978.2 -1 provisional p.P117 0.996 120 0% 132 11.4% 5 20% - - - NULL TMEM59 9528 genome.wustl.edu 37 1 54509073 54509073 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004872.3 -1 provisional p.A172 0.879 231 0% 142 14.8% 299 20.4% - - - NULL SSBP3 23648 genome.wustl.edu 37 1 54722844 54722844 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145716.2 -1 validated p.R155* 1.000 180 0% 189 11.1% 45 0% - - - HMMPfam_SSDP FAM151A 338094 genome.wustl.edu 37 1 55089007 55089007 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176782.2 -1 validated p.C21Y 0.000 219 0% 95 17.9% 1 0% benign(0.092) tolerated(0.07) neutral(0.326) NULL HEATR8 374977 genome.wustl.edu 37 1 55130864 55130864 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039464.2 +1 validated p.C419Y 0.001 183 0% 80 25% 0 - possibly_damaging(0.74) deleterious(0) deleterious(0.716) NULL HEATR8 374977 genome.wustl.edu 37 1 55144992 55144992 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039464.2 +1 validated p.L702 1.000 54 0% 31 25.8% 0 - - - - superfamily_ARM repeat HEATR8 374977 genome.wustl.edu 37 1 55174741 55174741 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039464.2 +1 validated p.V1241G 1.000 201 0% 153 24.8% 1 0% probably_damaging(0.958) deleterious(0) deleterious(0.846) superfamily_ARM repeat C1orf177 163747 genome.wustl.edu 37 1 55280625 55280625 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001110533.1 +1 validated p.K321N 0.000 174 0% 141 16.3% 0 - possibly_damaging(0.892) tolerated(0.5) neutral(0.361) NULL USP24 23358 genome.wustl.edu 37 1 55557771 55557771 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015306.2 -1 validated p.C2000Y 1.000 375 0% 159 21.4% 7 42.8% benign(0.002) tolerated(0.1) neutral(0.286) NULL USP24 23358 genome.wustl.edu 37 1 55569640 55569640 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015306.2 -1 validated p.A1485D 1.000 224 0% 95 21.1% 5 40% possibly_damaging(0.814) deleterious(0.01) deleterious(0.713) NULL C1orf168 199920 genome.wustl.edu 37 1 57206385 57206385 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004303.4 -1 validated p.S563L 0.175 508 0% 192 18.2% 2 0% benign(0.001) tolerated(0.41) neutral(0.015) NULL MYSM1 114803 genome.wustl.edu 37 1 59132739 59132739 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085487.1 -1 provisional p.R668* 1.000 210 0% 67 25.4% 0 - - - - HMMPfam_Mov34,HMMSmart_SM00232,superfamily_JAB1/MPN domain FGGY 55277 genome.wustl.edu 37 1 60133030 60133030 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113411.1 +1 validated p.L482I 1.000 388 0% 208 20.2% 24 62.5% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_FGGY_C,superfamily_SSF53067 FGGY 55277 genome.wustl.edu 37 1 60228223 60228223 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113411.1 +1 validated p.Q565 1.000 282 0% 102 17.6% 15 60% - - - superfamily_SSF53067 HOOK1 51361 genome.wustl.edu 37 1 60306031 60306031 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000371208 +1 known p.L197M 1.000 371 0% 145 26.2% 3 66.6% possibly_damaging(0.522) tolerated(0.21) neutral(0.220) HMMPfam_HOOK,superfamily_Prefoldin NFIA 4774 genome.wustl.edu 37 1 61892169 61892169 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145512.1 +1 reviewed p.R530* 1.000 332 0% 120 20% 0 - - - - HMMPfam_CTF_NFI NFIA 4774 genome.wustl.edu 37 1 61892191 61892191 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145512.1 +1 reviewed p.R537Q 1.000 319 0% 119 20.2% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_CTF_NFI INADL 10207 genome.wustl.edu 37 1 62574183 62574183 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176877.2 +1 reviewed p.Q1484H 1.000 439 0% 151 19.2% 9 77.7% probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like INADL 10207 genome.wustl.edu 37 1 62579829 62579829 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176877.2 +1 reviewed p.H1522Q 0.995 209 0% 61 13.1% 6 16.6% benign(0.001) tolerated(0.63) neutral(0.004) NULL L1TD1 54596 genome.wustl.edu 37 1 62676533 62676533 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019079.4 +1 validated p.R696K 0.110 189 0% 104 21.2% 0 - possibly_damaging(0.888) tolerated(0.08) deleterious(0.647) HMMPfam_Transposase_22 USP1 7398 genome.wustl.edu 37 1 62916114 62916114 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017415.1 +1 reviewed p.E607G 1.000 311 0% 180 13.9% 48 22.9% possibly_damaging(0.949) tolerated(0.11) deleterious(0.665) HMMPfam_UCH,superfamily_SSF54001 DOCK7 85440 genome.wustl.edu 37 1 62923376 62923376 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000454575 -1 known p.V1234M 1.000 450 0% 249 23.7% 18 83.3% - - - HMMPfam_Ded_cyto DOCK7 85440 genome.wustl.edu 37 1 62941757 62941757 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033407.2 -1 validated p.C1871Y 1.000 623 0% 484 23.8% 11 18.1% possibly_damaging(0.444) deleterious(0.01) deleterious(0.550) NULL ANGPTL3 27329 genome.wustl.edu 37 1 63063277 63063277 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014495.2 +1 reviewed p.V14I 0.910 461 0% 173 20.8% 0 - possibly_damaging(0.442) tolerated(0.1) neutral(0.431) NULL ANGPTL3 27329 genome.wustl.edu 37 1 63064447 63064447 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014495.2 +1 reviewed p.Q192H 0.999 405 0.2% 215 19.5% 0 - possibly_damaging(0.862) tolerated(0.08) deleterious(0.633) NULL DOCK7 85440 genome.wustl.edu 37 1 63091070 63091070 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033407.2 -1 validated p.R429* 1.000 178 0% 131 16.8% 3 0% - - - NULL DOCK7 85440 genome.wustl.edu 37 1 63119815 63119815 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033407.2 -1 validated p.A54S 1.000 134 0.7% 62 16.1% 1 0% benign(0) deleterious(0.02) neutral(0.383) NULL ALG6 29929 genome.wustl.edu 37 1 63876877 63876877 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013339.3 +1 reviewed p.C185 1.000 410 0% 140 22.1% 23 26% - - - HMMPfam_Alg6_Alg8 PGM1 5236 genome.wustl.edu 37 1 64100678 64100678 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002633.2 +1 reviewed p.F287 1.000 147 0% 68 13.2% 67 13.4% - - - HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase first 3 domains PGM1 5236 genome.wustl.edu 37 1 64120009 64120009 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002633.2 +1 reviewed p.R491C 0.999 229 0% 69 14.5% 93 13.9% possibly_damaging(0.949) deleterious(0.02) deleterious(0.776) HMMPfam_PGM_PMM_IV,superfamily_Phosphoglucomutase C-terminal domain ROR1 4919 genome.wustl.edu 37 1 64643851 64643851 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005012.2 +1 validated p.Q709H 1.000 141 0% 25 16% 2 0% benign(0.213) tolerated(0.07) neutral(0.340) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ROR1 4919 genome.wustl.edu 37 1 64644309 64644309 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005012.2 +1 validated p.S862L 1.000 154 0% 50 14% 2 100% possibly_damaging(0.829) deleterious(0) deleterious(0.759) NULL UBE2U 148581 genome.wustl.edu 37 1 64671404 64671404 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152489.1 +1 provisional e2+1 1.000 378 0% 550 20.9% 0 - - - - - CACHD1 57685 genome.wustl.edu 37 1 65142667 65142667 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020925.2 +1 validated p.S971I 1.000 126 0% 46 21.7% 15 53.3% benign(0) tolerated(0.13) neutral(0.253) NULL RAVER2 55225 genome.wustl.edu 37 1 65234340 65234340 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018211.3 +1 validated p.E84A 1.000 660 0% 505 14.5% 2 0% possibly_damaging(0.949) tolerated(0.11) deleterious(0.665) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 RAVER2 55225 genome.wustl.edu 37 1 65273143 65273143 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018211.3 +1 validated p.E543* 0.095 30 0% 18 38.9% 2 0% - - - NULL JAK1 3716 genome.wustl.edu 37 1 65332611 65332611 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002227.2 -1 reviewed p.V310I 0.000 315 0.3% 168 25% 10 30% benign(0) tolerated(0.24) neutral(0.037) NULL JAK1 3716 genome.wustl.edu 37 1 65332691 65332691 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002227.2 -1 reviewed p.A283V 1.000 378 0% 206 14.6% 29 24.1% benign(0.008) tolerated(0.2) neutral(0.049) HMMSmart_B41 DNAJC6 9829 genome.wustl.edu 37 1 65871727 65871727 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014787.2 +1 validated p.S744F 1.000 319 0% 178 20.8% 0 - possibly_damaging(0.794) tolerated(0.65) neutral(0.301) NULL DNAJC6 9829 genome.wustl.edu 37 1 65874418 65874418 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014787.2 +1 validated p.E805D 1.000 336 0.3% 203 13.3% 0 - possibly_damaging(0.55) tolerated(0.07) deleterious(0.506) NULL PDE4B 5142 genome.wustl.edu 37 1 66384303 66384303 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037341.1 +1 reviewed p.C22 0.994 194 0% 135 28.9% 0 - - - - NULL SGIP1 84251 genome.wustl.edu 37 1 67147933 67147933 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032291.2 +1 validated p.S399F 1.000 123 0% 49 20.4% 0 - possibly_damaging(0.92) deleterious(0) deleterious(0.816) NULL IL12RB2 3595 genome.wustl.edu 37 1 67794053 67794053 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001559.2 +1 reviewed p.T217I 0.759 426 0% 240 23.7% 0 - probably_damaging(0.996) tolerated(0.07) deleterious(0.780) superfamily_Fibronectin type III IL12RB2 3595 genome.wustl.edu 37 1 67796420 67796420 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441640 +1 known p.L163I 1.000 386 0% 153 23.5% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SERBP1 26135 genome.wustl.edu 37 1 67880914 67880914 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018067.1 -1 validated p.G369S 1.000 98 0% 77 22.1% 633 40.9% benign(0.115) tolerated(0.56) neutral(0.015) NULL DIRAS3 9077 genome.wustl.edu 37 1 68512595 68512595 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004675.2 -1 reviewed p.A129V 1.000 115 0% 137 19% 2 0% benign(0.025) tolerated(0.13) neutral(0.254) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases WLS 79971 genome.wustl.edu 37 1 68659840 68659840 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002292.2 -1 validated p.K57N 0.451 224 0% 113 18.6% 32 21.8% benign(0.362) tolerated(0.14) neutral(0.364) NULL RPE65 6121 genome.wustl.edu 37 1 68906646 68906646 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000329.2 -1 reviewed p.T178I 1.000 303 0% 191 13.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RPE65 DEPDC1 55635 genome.wustl.edu 37 1 68943557 68943557 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114120.1 -1 validated p.T737 1.000 179 0% 72 20.8% 13 38.4% - - - NULL DEPDC1 55635 genome.wustl.edu 37 1 68954101 68954101 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114120.1 -1 validated p.A226D 1.000 772 0% 563 19% 2 100% benign(0.196) tolerated(0.41) neutral(0.034) superfamily_Rho_GAP LRRC7 57554 genome.wustl.edu 37 1 70505388 70505388 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020794.2 +1 validated p.P1256L 1.000 124 0% 50 12% 0 - possibly_damaging(0.773) deleterious(0.01) deleterious(0.693) NULL SRSF11 9295 genome.wustl.edu 37 1 70716363 70716363 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004768.2 +1 reviewed p.P444S 0.075 199 0% 90 23.3% 58 39.6% possibly_damaging(0.789) tolerated(0.67) neutral(0.298) NULL ANKRD13C 81573 genome.wustl.edu 37 1 70736583 70736583 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030816.4 -1 validated p.E484A 1.000 298 0% 101 17.8% 13 38.4% probably_damaging(0.979) deleterious(0.02) deleterious(0.805) NULL FPGT 8790 genome.wustl.edu 37 1 74670439 74670439 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003838.2 +1 reviewed p.M236I 1.000 176 0% 194 16.5% 11 36.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Fucokinase TNNI3K 51086 genome.wustl.edu 37 1 74957890 74957890 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112808.1 +1 validated p.R865I 0.575 399 0.3% 134 19.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL C1orf173 127254 genome.wustl.edu 37 1 75055368 75055368 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002912.4 -1 validated p.S708I 0.559 346 0% 104 17.3% 0 - possibly_damaging(0.677) tolerated(0.12) deleterious(0.502) NULL C1orf173 127254 genome.wustl.edu 37 1 75072553 75072553 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002912.4 -1 validated p.P407 0.898 167 0% 88 20.5% 0 - - - - NULL ACADM 34 genome.wustl.edu 37 1 76198571 76198571 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127328.1 +1 reviewed p.L88F 1.000 212 0% 246 24% 23 56.5% possibly_damaging(0.918) deleterious(0) deleterious(0.813) HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like ACADM 34 genome.wustl.edu 37 1 76211529 76211529 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127328.1 +1 reviewed p.A217V 1.000 294 0% 175 18.9% 44 43.1% benign(0.002) tolerated(0.29) neutral(0.029) superfamily_Acyl-CoA dehydrogenase NM domain-like RABGGTB 5876 genome.wustl.edu 37 1 76254926 76254926 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004582.2 +1 provisional p.R65H 1.000 499 0% 304 20.1% 26 42.3% probably_damaging(0.991) tolerated(0.11) deleterious(0.716) superfamily_Terpenoid cyclases/Protein prenyltransferases MSH4 4438 genome.wustl.edu 37 1 76378512 76378512 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002440.2 +1 validated p.K917N 1.000 155 0% 93 32.3% 1 0% possibly_damaging(0.893) deleterious(0.02) deleterious(0.735) NULL ST6GALNAC3 256435 genome.wustl.edu 37 1 76779638 76779638 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152996.2 +1 validated p.R56Q 1.000 436 0% 77 14.3% 2 0% benign(0.011) tolerated(0.5) neutral(0.011) HMMPfam_Glyco_transf_29 ST6GALNAC5 81849 genome.wustl.edu 37 1 77528702 77528702 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030965.1 +1 provisional p.P274 0.099 328 0% 145 13.1% 0 - - - - HMMPfam_Glyco_transf_29 PIGK 10026 genome.wustl.edu 37 1 77632517 77632517 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005482.2 -1 reviewed e5-2 1.000 79 0% 49 14.3% 0 - - - - - ZZZ3 26009 genome.wustl.edu 37 1 78031830 78031830 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015534.4 -1 provisional p.R835 1.000 186 0% 56 23.2% 15 46.6% - - - HMMPfam_ZZ,PatternScan_ZF_ZZ_1 ZZZ3 26009 genome.wustl.edu 37 1 78044474 78044474 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015534.4 -1 provisional p.Y721 1.000 418 0% 292 25.3% 15 40% - - - NULL NEXN 91624 genome.wustl.edu 37 1 78395074 78395074 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144573.3 +1 reviewed p.S313N 1.000 372 0% 172 17.4% 3 0% probably_damaging(0.99) tolerated(0.05) deleterious(0.787) NULL NEXN 91624 genome.wustl.edu 37 1 78407890 78407890 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144573.3 +1 reviewed p.Q552H 0.781 174 0% 53 20.8% 3 33.3% possibly_damaging(0.807) deleterious(0.01) deleterious(0.710) NULL DNAJB4 11080 genome.wustl.edu 37 1 78481784 78481784 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007034.3 +1 provisional p.M289I 1.000 347 0% 122 23% 6 33.3% benign(0.051) tolerated(0.36) neutral(0.023) HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain GIPC2 54810 genome.wustl.edu 37 1 78585179 78585179 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017655.4 +1 validated p.E237G 0.988 410 0% 129 16.3% 2 0% possibly_damaging(0.767) deleterious(0.02) deleterious(0.667) NULL PTGFR 5737 genome.wustl.edu 37 1 78958952 78958952 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000959.3 +1 reviewed p.R175Q 0.990 477 0% 668 19.3% 0 - probably_damaging(0.964) tolerated(0.26) neutral(0.441) HMMPfam_7tm_1,superfamily_SSF81321 IFI44L 10964 genome.wustl.edu 37 1 79094666 79094666 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006820.2 +1 validated p.R170M 0.000 306 0% 83 18.1% 24 8.3% probably_damaging(0.982) deleterious(0.01) deleterious(0.832) superfamily_P-loop containing nucleoside triphosphate hydrolases IFI44L 10964 genome.wustl.edu 37 1 79095507 79095507 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006820.2 +1 validated p.K210 0.990 341 0% 89 15.7% 11 27.2% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases IFI44 10561 genome.wustl.edu 37 1 79115906 79115906 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006417.4 +1 validated p.W9L 0.010 172 0% 82 17.1% 23 43.4% probably_damaging(0.954) tolerated(0.18) neutral(0.454) NULL IFI44 10561 genome.wustl.edu 37 1 79120887 79120887 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006417.4 +1 validated p.S228F 0.002 271 0% 69 17.4% 58 31% probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_SSF52540 ELTD1 64123 genome.wustl.edu 37 1 79383599 79383599 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022159.3 -1 validated p.F533C 1.000 281 0% 65 30.8% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_2 LPHN2 23266 genome.wustl.edu 37 1 82415960 82415960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012302.2 +1 reviewed p.P429H 1.000 248 0.4% 92 21.7% 10 30% possibly_damaging(0.455) deleterious(0) deleterious(0.594) NULL LPHN2 23266 genome.wustl.edu 37 1 82456345 82456345 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012302.2 +1 reviewed p.D1243G 0.995 107 0% 20 25% 44 40.9% benign(0.103) tolerated(0.16) neutral(0.068) HMMPfam_Latrophilin SPATA1 100505741 genome.wustl.edu 37 1 85018717 85018717 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081472.1 +1 validated e12-1 1.000 31 0% 13 46.2% 0 - - - - - CTBS 1486 genome.wustl.edu 37 1 85029037 85029037 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004388.2 -1 validated p.R287H 0.000 114 0% 160 14.4% 25 36% benign(0.008) tolerated(0.38) neutral(0.018) HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases SSX2IP 117178 genome.wustl.edu 37 1 85121534 85121534 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014021.3 -1 reviewed p.A457D 1.000 371 0.3% 219 21% 18 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LPAR3 23566 genome.wustl.edu 37 1 85331609 85331609 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012152.2 -1 reviewed p.F65 1.000 165 0% 54 11.1% 1 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 SYDE2 84144 genome.wustl.edu 37 1 85656164 85656164 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032184.1 -1 validated p.T339 0.000 502 0% 327 19.9% 1 0% - - - NULL C1orf52 148423 genome.wustl.edu 37 1 85725199 85725199 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198077.3 -1 validated p.D40N 0.005 47 0% 59 23.7% 18 33.3% benign(0.001) tolerated(0.54) neutral(0.007) NULL ZNHIT6 54680 genome.wustl.edu 37 1 86123550 86123550 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017953.3 -1 validated p.D451G 1.000 291 0% 65 35.4% 12 41.6% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL ZNHIT6 54680 genome.wustl.edu 37 1 86171826 86171826 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017953.3 -1 validated p.V284M 1.000 310 0% 180 21.7% 12 8.3% probably_damaging(0.995) tolerated(0.08) deleterious(0.758) NULL COL24A1 255631 genome.wustl.edu 37 1 86210409 86210409 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152890.5 -1 validated p.R1538* 0.998 711 0% 432 19.7% 0 - - - - HMMPfam_COLFI,HMMSmart_SM00038 COL24A1 255631 genome.wustl.edu 37 1 86308067 86308067 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152890.5 -1 validated p.G1158* 1.000 158 0% 84 27.4% 0 - - - - HMMPfam_Collagen COL24A1 255631 genome.wustl.edu 37 1 86591029 86591029 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152890.5 -1 validated p.H330 0.001 273 0.4% 126 19% 0 - - - - NULL CLCA2 9635 genome.wustl.edu 37 1 86898078 86898078 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006536.5 +1 reviewed p.F204S 0.027 429 0% 95 14.7% 0 - probably_damaging(0.996) tolerated(0.4) deleterious(0.478) HMMPfam_CLCA_N CLCA4 22802 genome.wustl.edu 37 1 87012892 87012892 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012128.3 +1 reviewed p.G30 0.995 548 0% 614 21.8% 0 - - - - HMMPfam_CLCA_N CLCA4 22802 genome.wustl.edu 37 1 87031605 87031605 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012128.3 +1 reviewed p.I286V 0.000 308 0% 167 19.2% 1 100% benign(0.001) tolerated(0.45) neutral(0.012) NULL CLCA4 22802 genome.wustl.edu 37 1 87036934 87036934 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012128.3 +1 reviewed p.T453A 0.995 491 0% 141 27% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 SH3GLB1 51100 genome.wustl.edu 37 1 87207962 87207962 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016009.3 +1 validated p.A278V 0.016 414 0% 158 10.8% 85 20% benign(0) tolerated(0.45) neutral(0.012) superfamily_SH3-domain SH3GLB1 51100 genome.wustl.edu 37 1 87208111 87208111 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016009.3 +1 validated p.A328S 1.000 253 0% 91 14.3% 111 36.9% possibly_damaging(0.854) tolerated(0.1) deleterious(0.615) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain ENSG00000183291 0 genome.wustl.edu 37 1 87379761 87379761 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000401030 -1 known p.L9 0.000 97 0% 143 16.1% 104 25% - - - NULL HS2ST1 9653 genome.wustl.edu 37 1 87538728 87538728 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012262.3 +1 reviewed p.N79S 1.000 338 0% 111 18.9% 7 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases GTF2B 2959 genome.wustl.edu 37 1 89323160 89323160 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001514.5 -1 reviewed p.A182 0.110 49 0% 22 18.2% 35 42.8% - - - HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_TFIIB CCBL2 56267 genome.wustl.edu 37 1 89408756 89408756 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000260508 -1 known p.V412I 1.000 188 0% 83 9.6% 78 19.2% benign(0.005) tolerated(0.51) neutral(0.009) superfamily_PLP-dependent transferases GBP3 2635 genome.wustl.edu 37 1 89486390 89486390 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018284.2 -1 reviewed p.I5 0.898 398 0% 294 19.4% 20 40% - - - NULL GBP2 2634 genome.wustl.edu 37 1 89585915 89585915 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004120.3 -1 reviewed p.T125 1.000 542 0% 369 20.9% 168 17.8% - - - HMMPfam_GBP,superfamily_SSF52540 GBP7 388646 genome.wustl.edu 37 1 89615207 89615207 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207398.2 -1 validated p.A307V 0.006 151 0% 80 27.5% 0 - possibly_damaging(0.507) tolerated(0.25) neutral(0.207) HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain GBP4 115361 genome.wustl.edu 37 1 89651146 89651146 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052941.4 -1 validated p.E572* 0.000 253 0% 216 28.7% 40 15% - - - HMMPfam_GBP_C,superfamily_GBP LRRC8D 55144 genome.wustl.edu 37 1 90398964 90398964 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134479.1 +1 validated p.A113T 1.000 241 0% 111 23.4% 13 53.8% benign(0) tolerated(0.59) neutral(0.004) NULL LRRC8D 55144 genome.wustl.edu 37 1 90399262 90399262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134479.1 +1 validated p.A212V 1.000 145 0% 77 24.7% 17 64.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF326 284695 genome.wustl.edu 37 1 90475806 90475806 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182976.2 +1 validated p.A259T 0.997 400 0% 203 14.8% 12 8.3% benign(0) tolerated(0.27) neutral(0.034) NULL BARHL2 343472 genome.wustl.edu 37 1 91182270 91182270 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020063.1 -1 validated p.S161 1.000 174 0% 235 26% 0 - - - - NULL ZNF644 84146 genome.wustl.edu 37 1 91405848 91405848 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201269.1 -1 validated p.E355K 1.000 203 0% 105 23.8% 7 57.1% possibly_damaging(0.608) deleterious(0.01) deleterious(0.616) NULL HFM1 164045 genome.wustl.edu 37 1 91784732 91784732 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017975.3 -1 validated p.K905 0.996 184 0% 93 16.1% 0 - - - - HMMPfam_Sec63 CDC7 8317 genome.wustl.edu 37 1 91978856 91978856 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134419.1 +1 reviewed p.D272Y 1.000 188 0% 77 20.8% 3 0% possibly_damaging(0.918) tolerated(0.1) deleterious(0.655) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CDC7 8317 genome.wustl.edu 37 1 91980446 91980446 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134419.1 +1 reviewed p.T330I 1.000 300 0% 101 18.8% 5 60% possibly_damaging(0.839) tolerated(0.06) deleterious(0.643) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TGFBR3 7049 genome.wustl.edu 37 1 92187516 92187516 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003243.3 -1 validated p.N357K 0.995 211 0% 78 25.6% 1 0% benign(0.069) tolerated(0.77) neutral(0.005) NULL BRDT 676 genome.wustl.edu 37 1 92428330 92428330 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001726.3 +1 validated p.Q7* 0.997 357 0% 228 17.1% 0 - - - - superfamily_Bromodomain EPHX4 253152 genome.wustl.edu 37 1 92528719 92528719 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173567.4 +1 validated p.V322A 1.000 313 0% 91 22% 2 0% benign(0.172) tolerated(0.05) neutral(0.361) HMMPfam_Abhydrolase_1,superfamily_SSF53474 KIAA1107 23285 genome.wustl.edu 37 1 92643383 92643383 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015237.2 +1 validated p.P352H 0.992 166 0% 84 16.7% 1 0% possibly_damaging(0.845) deleterious(0) deleterious(0.768) NULL KIAA1107 23285 genome.wustl.edu 37 1 92647995 92647995 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015237.2 +1 validated p.H1147Q 0.948 91 0% 42 16.7% 3 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL RPAP2 79871 genome.wustl.edu 37 1 92789039 92789039 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000370343 +1 known p.A188S 0.036 218 0.5% 110 21.8% 11 63.6% benign(0.253) tolerated(0.75) neutral(0.028) NULL GFI1 2672 genome.wustl.edu 37 1 92941683 92941683 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127215.1 -1 reviewed p.T391I 1.000 270 0% 264 24.6% 8 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) superfamily_SSF57667 EVI5 7813 genome.wustl.edu 37 1 92979293 92979293 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005665.4 -1 validated p.L785M 0.057 174 0% 62 19.4% 2 50% possibly_damaging(0.437) deleterious(0) deleterious(0.587) NULL RPL5 6125 genome.wustl.edu 37 1 93298990 93298990 + Silent SNP C C T rs148673599 byFrequency TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000969.3 +1 reviewed p.Y16 1.000 479 0% 410 17.6% 928 37.9% - - - superfamily_Translational machinery components FAM69A 388650 genome.wustl.edu 37 1 93316421 93316421 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006605.3 -1 reviewed p.T94I 1.000 426 0% 188 21.3% 2 0% benign(0.382) tolerated(0.16) neutral(0.181) NULL TMED5 50999 genome.wustl.edu 37 1 93645689 93645689 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016040.4 -1 validated p.T37 0.995 63 0% 63 15.9% 36 38.8% - - - HMMPfam_EMP24_GP25L BCAR3 8412 genome.wustl.edu 37 1 94033320 94033320 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003567.2 -1 reviewed p.S688I 1.000 266 0% 125 15.2% 10 20% possibly_damaging(0.832) tolerated(0.24) neutral(0.354) HMMSmart_SM00147,superfamily_Ras GEF BCAR3 8412 genome.wustl.edu 37 1 94047902 94047902 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003567.2 -1 reviewed p.D548N 0.324 412 0% 292 22.3% 13 38.4% benign(0) tolerated(0.21) neutral(0.044) HMMSmart_SM00147,superfamily_Ras GEF BCAR3 8412 genome.wustl.edu 37 1 94048087 94048087 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003567.2 -1 reviewed p.P486H 0.010 204 0.5% 166 13.3% 7 28.5% benign(0.001) tolerated(0.26) neutral(0.034) superfamily_Ras GEF DNTTIP2 30836 genome.wustl.edu 37 1 94342648 94342648 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014597.3 -1 provisional p.H281 0.000 306 0% 328 11% 29 20.6% - - - NULL ABCA4 24 genome.wustl.edu 37 1 94466604 94466604 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000350.2 -1 reviewed p.V2114M 0.959 168 0.6% 83 22.9% 0 - benign(0) tolerated(0.2) neutral(0.049) HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540 ABCD3 5825 genome.wustl.edu 37 1 94965093 94965093 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002858.3 +1 reviewed p.L555I 1.000 439 0% 115 17.4% 29 44.8% possibly_damaging(0.513) tolerated(0.14) neutral(0.422) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases PTBP2 58155 genome.wustl.edu 37 1 97243419 97243419 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021190.2 +1 reviewed p.K209E 1.000 234 0% 189 25.9% 5 60% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD DPYD 1806 genome.wustl.edu 37 1 97771762 97771762 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000110.3 -1 reviewed p.I717S 1.000 207 0% 75 25.3% 11 18.1% possibly_damaging(0.742) tolerated(0.08) deleterious(0.572) HMMPfam_DHO_dh,superfamily_SSF51395 DPYD 1806 genome.wustl.edu 37 1 98039457 98039457 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000110.3 -1 reviewed p.G400C 1.000 358 0% 149 16.1% 2 0% benign(0.406) deleterious(0.01) deleterious(0.536) HMMPfam_Pyr_redox_2,superfamily_SSF51971 SNX7 51375 genome.wustl.edu 37 1 99164344 99164344 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015976.3 +1 reviewed p.K307N 0.015 231 0% 136 19.9% 53 64.1% benign(0.202) tolerated(0.44) neutral(0.032) NULL PALMD 54873 genome.wustl.edu 37 1 100154514 100154514 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017734.4 +1 validated p.G233D 0.989 117 0% 30 16.7% 24 25% benign(0.005) tolerated(0.47) neutral(0.011) HMMPfam_Paralemmin PALMD 54873 genome.wustl.edu 37 1 100154788 100154788 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017734.4 +1 validated p.P324 0.009 184 0% 65 15.4% 39 38.4% - - - NULL AGL 178 genome.wustl.edu 37 1 100340251 100340251 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000028.2 +1 reviewed p.R323* 0.081 227 0.4% 164 25% 1 0% - - - superfamily_(Trans)glycosidases AGL 178 genome.wustl.edu 37 1 100376393 100376393 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000028.2 +1 reviewed p.A1276S 1.000 379 0% 154 15.6% 1 0% probably_damaging(1) tolerated(0.63) deleterious(0.503) superfamily_Six-hairpin glycosidases,HMMPfam_GDE_C SASS6 163786 genome.wustl.edu 37 1 100584687 100584687 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194292.1 -1 validated p.A186S 1.000 505 0% 435 23.4% 5 60% benign(0) tolerated(1) - NULL LRRC39 127495 genome.wustl.edu 37 1 100621764 100621764 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144620.2 -1 provisional p.S208N 1.000 280 0% 235 26.4% 0 - possibly_damaging(0.68) tolerated(0.86) neutral(0.243) HMMSmart_SM00369,superfamily_L domain-like LRRC39 127495 genome.wustl.edu 37 1 100621828 100621828 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144620.2 -1 provisional p.D187N 0.999 335 0.3% 269 15.6% 1 0% benign(0) tolerated(0.34) neutral(0.023) HMMSmart_SM00369,superfamily_L domain-like DBT 1629 genome.wustl.edu 37 1 100672120 100672120 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001918.2 -1 reviewed p.I364V 0.685 318 0% 292 13% 7 0% benign(0) tolerated(0.34) neutral(0.023) HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases OLFM3 118427 genome.wustl.edu 37 1 102270190 102270190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424771 -1 known p.S197L 0.889 246 0% 49 22.4% 0 - unknown(0) deleterious(0) - HMMPfam_OLF,HMMSmart_SM00284 COL11A1 1301 genome.wustl.edu 37 1 103431087 103431087 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080629.2 -1 reviewed p.G970C 1.000 108 0% 60 20% 0 - unknown(0) deleterious(0) - HMMPfam_Collagen COL11A1 1301 genome.wustl.edu 37 1 103483383 103483383 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080629.2 -1 reviewed p.G481D 0.999 149 0% 133 17.3% 0 - unknown(0) deleterious(0.03) - HMMPfam_Collagen AMY2B 280 genome.wustl.edu 37 1 104120214 104120214 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020978.3 +1 reviewed p.R402* 1.000 322 0% 118 20.3% 53 1.8% - - - HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases HENMT1 113802 genome.wustl.edu 37 1 109191341 109191341 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102592.1 -1 validated p.L343 0.829 281 0% 244 13.1% 17 23.5% - - - NULL AKNAD1 254268 genome.wustl.edu 37 1 109358817 109358817 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152763.3 -1 validated p.R829 0.143 621 0% 401 22.4% 0 - - - - NULL GPSM2 29899 genome.wustl.edu 37 1 109441271 109441271 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013296.4 +1 validated p.L189I 0.973 87 0% 49 16.3% 5 60% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_SSF48452 GPSM2 29899 genome.wustl.edu 37 1 109466822 109466822 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013296.4 +1 validated p.L601I 1.000 280 0% 135 20.7% 24 45.8% probably_damaging(0.965) tolerated(0.14) deleterious(0.656) HMMPfam_GoLoco,HMMSmart_GoLoco CLCC1 23155 genome.wustl.edu 37 1 109486118 109486118 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048210.1 -1 validated p.W227* 1.000 221 0% 109 24.8% 11 9% - - - HMMPfam_MCLC WDR47 22911 genome.wustl.edu 37 1 109514090 109514090 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142550.1 -1 validated p.A916T 1.000 288 0.3% 251 20.3% 6 50% probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 CELSR2 1952 genome.wustl.edu 37 1 109806249 109806249 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001408.2 +1 reviewed p.Q1617H 1.000 90 0% 93 23.7% 20 50% benign(0.008) tolerated(0.48) neutral(0.011) superfamily_ConA_like_lec_gl CELSR2 1952 genome.wustl.edu 37 1 109806291 109806291 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001408.2 +1 reviewed p.S1631 0.003 70 0% 86 31.4% 21 42.8% - - - superfamily_ConA_like_lec_gl CELSR2 1952 genome.wustl.edu 37 1 109808758 109808758 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001408.2 +1 reviewed p.E1981D 1.000 95 0% 108 27.8% 19 31.5% benign(0.096) tolerated(0.49) neutral(0.018) HMMPfam_HRM,HMMSmart_HormR CELSR2 1952 genome.wustl.edu 37 1 109812437 109812437 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001408.2 +1 reviewed p.R2368W 1.000 134 2.2% 108 22.2% 29 44.8% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_GPS SORT1 6272 genome.wustl.edu 37 1 109857002 109857002 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002959.4 -1 reviewed p.L788M 1.000 88 0% 68 10.3% 54 20.3% possibly_damaging(0.526) deleterious(0.05) deleterious(0.523) NULL SORT1 6272 genome.wustl.edu 37 1 109884663 109884663 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002959.4 -1 reviewed p.V361L 1.000 192 0% 74 17.6% 28 35.7% benign(0.037) tolerated(0.09) neutral(0.298) HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase PSMA5 5686 genome.wustl.edu 37 1 109957948 109957948 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002790.2 -1 reviewed p.G45D 1.000 409 0% 196 24% 441 42.1% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) SYPL2 284612 genome.wustl.edu 37 1 110019476 110019476 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040709.1 +1 validated p.F111L 1.000 377 0.3% 310 19% 1 0% probably_damaging(0.987) deleterious(0.04) deleterious(0.785) HMMPfam_MARVEL GPR61 83873 genome.wustl.edu 37 1 110086145 110086145 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031936.4 +1 validated p.W167* 1.000 152 0% 149 23.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like AMPD2 271 genome.wustl.edu 37 1 110168331 110168331 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004037.6 +1 validated p.P144 0.058 65 0% 102 20.6% 4 0% - - - NULL AMPD2 271 genome.wustl.edu 37 1 110171273 110171273 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004037.6 +1 validated p.M526I 1.000 53 0% 66 19.7% 33 15.1% benign(0.02) tolerated(0.51) neutral(0.010) HMMPfam_A_deaminase,superfamily_Metallo-dependent hydrolases GSTM3 2947 genome.wustl.edu 37 1 110279596 110279596 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024537.1 -1 reviewed NULL 0.698 84 0% 96 31.2% 2 100% - - - - GSTM3 2947 genome.wustl.edu 37 1 110280989 110280989 + Splice_Site SNP C C A rs78442107 byCluster TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000849.4 -1 reviewed e4-1 1.000 318 0.3% 327 22% 0 - - - - - EPS8L3 79574 genome.wustl.edu 37 1 110299671 110299671 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139053.1 -1 reviewed p.W363C 0.985 222 0% 169 24.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL EPS8L3 79574 genome.wustl.edu 37 1 110300103 110300103 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139053.1 -1 reviewed p.F324 0.000 158 0% 144 20.1% 3 66.6% - - - NULL ALX3 257 genome.wustl.edu 37 1 110603600 110603600 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006492.2 -1 reviewed p.P263T 1.000 41 0% 30 16.7% 3 0% possibly_damaging(0.84) tolerated(0.09) deleterious(0.618) NULL UBL4B 164153 genome.wustl.edu 37 1 110655439 110655439 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203412.1 +1 validated p.G95R 0.069 35 0% 34 26.5% 0 - benign(0.006) tolerated(0.25) neutral(0.037) NULL SLC6A17 388662 genome.wustl.edu 37 1 110717490 110717490 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010898.2 +1 validated p.G221W 1.000 155 0% 114 18.4% 0 - benign(0.274) deleterious(0) deleterious(0.474) HMMPfam_SNF SLC6A17 388662 genome.wustl.edu 37 1 110734702 110734702 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010898.2 +1 validated p.Q325* 1.000 379 0% 289 21.1% 0 - - - - HMMPfam_SNF KCNC4 3749 genome.wustl.edu 37 1 110766057 110766057 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004978.3 +1 reviewed p.L384F 1.000 51 0% 55 23.6% 17 41.1% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels DENND2D 79961 genome.wustl.edu 37 1 111742280 111742280 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024901.3 -1 provisional p.D70N 0.001 76 0% 112 18.8% 20 35% benign(0.004) tolerated(0.5) neutral(0.010) HMMPfam_uDENN,HMMSmart_SM00800 OVGP1 5016 genome.wustl.edu 37 1 111968073 111968073 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000369728 -1 known p.L147 0.000 395 0% 135 17.8% 0 - - - - HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases ATP5F1 515 genome.wustl.edu 37 1 111996905 111996905 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001688.4 +1 reviewed p.Y50 1.000 268 0% 210 25.2% 193 32.6% - - - NULL ST7L 54879 genome.wustl.edu 37 1 113093301 113093301 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017744.4 -1 reviewed p.P471T 1.000 202 0.5% 75 17.3% 10 30% probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_ST7 ST7L 54879 genome.wustl.edu 37 1 113159499 113159499 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017744.4 -1 reviewed p.S75L 1.000 294 0% 309 21.7% 8 62.5% benign(0.398) deleterious(0) deleterious(0.573) HMMPfam_ST7 RHOC 389 genome.wustl.edu 37 1 113245695 113245695 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042678.1 -1 reviewed p.R68Q 1.000 68 0% 131 19.1% 515 35.5% possibly_damaging(0.798) deleterious(0) deleterious(0.745) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases PPM1J 333926 genome.wustl.edu 37 1 113253144 113253144 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005167.5 -1 reviewed p.D436 0.207 183 0% 238 26.5% 3 66.6% - - - HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain PPM1J 333926 genome.wustl.edu 37 1 113254995 113254995 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005167.5 -1 reviewed p.V272M 0.998 82 0% 130 15.4% 2 50% benign(0) tolerated(0.33) neutral(0.024) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C LRIG2 9860 genome.wustl.edu 37 1 113638976 113638976 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014813.1 +1 provisional p.N360 1.000 626 0% 268 12.3% 0 - - - - superfamily_SSF52047 MAGI3 260425 genome.wustl.edu 37 1 114225949 114225949 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142782.1 +1 validated p.D1253 0.001 113 0% 100 20% 3 0% - - - NULL AP4B1 10717 genome.wustl.edu 37 1 114438979 114438979 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006594.2 -1 validated p.A471T 1.000 229 0% 111 12.6% 20 75% benign(0.001) tolerated(0.2) neutral(0.049) HMMPfam_Adaptin_N,superfamily_ARM-type_fold LOC100287722 100287722 genome.wustl.edu 37 1 114445385 114445385 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342103.1 +1 model p.V60I 1.000 234 0% 212 20.3% 11 36.3% - - - NULL DCLRE1B 64858 genome.wustl.edu 37 1 114453757 114453757 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022836.3 +1 validated p.L181 0.904 133 0% 118 23.7% 14 57.1% - - - NULL HIPK1 204851 genome.wustl.edu 37 1 114500802 114500802 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198268.1 +1 reviewed p.V624I 1.000 331 0% 205 23.4% 7 14.2% benign(0.016) tolerated(0.78) neutral(0.002) NULL HIPK1 204851 genome.wustl.edu 37 1 114515725 114515725 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198268.1 +1 reviewed p.A1075V 1.000 57 0% 48 20.8% 8 37.5% probably_damaging(0.985) tolerated(0.77) neutral(0.433) NULL OLFML3 56944 genome.wustl.edu 37 1 114524089 114524089 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020190.2 +1 validated p.D307Y 1.000 64 0% 37 21.6% 88 23.8% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) HMMPfam_OLF,HMMSmart_SM00284 SYT6 148281 genome.wustl.edu 37 1 114680281 114680281 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_205848.2 -1 validated p.P218S 1.000 373 0% 211 12.3% 0 - possibly_damaging(0.447) tolerated(0.06) deleterious(0.469) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB AMPD1 270 genome.wustl.edu 37 1 115217475 115217475 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000036.2 -1 reviewed p.T566 0.003 169 0% 206 22.8% 0 - - - - HMMPfam_A_deaminase,superfamily_SSF51556 AMPD1 270 genome.wustl.edu 37 1 115220071 115220071 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000036.2 -1 reviewed p.G430V 1.000 156 0% 120 24.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_A_deaminase,superfamily_SSF51556 AMPD1 270 genome.wustl.edu 37 1 115222220 115222220 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000036.2 -1 reviewed p.D293Y 1.000 336 0% 266 22.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF51556 SYCP1 6847 genome.wustl.edu 37 1 115430246 115430246 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003176.2 +1 validated e14-1 1.000 150 0% 127 11.8% 0 - - - - - TSPAN2 10100 genome.wustl.edu 37 1 115596079 115596079 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005725.4 -1 reviewed p.C174Y 1.000 267 0% 87 18.4% 3 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Tetraspanin,HMMPfam_Tetraspannin NGF 4803 genome.wustl.edu 37 1 115828832 115828832 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002506.2 -1 reviewed p.K195 1.000 172 0% 199 20.6% 1 100% - - - HMMPfam_NGF,HMMSmart_NGF,PatternScan_NGF_1,superfamily_SSF57501 VANGL1 81839 genome.wustl.edu 37 1 116206802 116206802 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138959.2 +1 reviewed p.E242A 1.000 184 0% 74 32.4% 6 33.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Strabismus SLC22A15 55356 genome.wustl.edu 37 1 116577889 116577889 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018420.2 +1 validated p.L342 0.990 472 0% 163 19% 0 - - - - superfamily_MFS general substrate transporter ATP1A1 476 genome.wustl.edu 37 1 116941305 116941305 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000701.7 +1 reviewed p.D729 1.000 699 0.1% 198 11.1% 314 21.6% - - - HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M ATP1A1 476 genome.wustl.edu 37 1 116944250 116944250 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000701.7 +1 reviewed p.G975D 0.998 540 0% 232 21.1% 651 41.1% benign(0) tolerated(1) - HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M IGSF3 3321 genome.wustl.edu 37 1 117127365 117127365 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001542.2 -1 validated p.S937N 1.000 51 0% 46 26.1% 5 80% possibly_damaging(0.538) tolerated(0.38) neutral(0.200) HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 IGSF3 3321 genome.wustl.edu 37 1 117158752 117158752 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001542.2 -1 validated p.S124I 1.000 268 0% 146 20.5% 2 50% benign(0.13) deleterious(0) neutral(0.456) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 TTF2 8458 genome.wustl.edu 37 1 117635410 117635410 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003594.3 +1 reviewed p.L955I 1.000 272 0% 211 26.1% 25 28% possibly_damaging(0.892) deleterious(0.02) deleterious(0.734) NULL TRIM45 80263 genome.wustl.edu 37 1 117659263 117659263 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025188.3 -1 reviewed p.V443I 0.047 186 0% 184 32.1% 13 23% benign(0) tolerated(1) - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin TRIM45 80263 genome.wustl.edu 37 1 117659366 117659366 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025188.3 -1 reviewed p.D408 0.980 156 0% 172 22.7% 6 33.3% - - - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin SPAG17 200162 genome.wustl.edu 37 1 118629542 118629542 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206996.2 -1 validated p.H483 1.000 210 0% 225 20% 0 - - - - NULL PHGDH 26227 genome.wustl.edu 37 1 120286594 120286594 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006623.3 +1 reviewed p.I511 1.000 81 0% 46 15.2% 246 33.7% - - - NULL REG4 83998 genome.wustl.edu 37 1 120342396 120342396 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032044.3 -1 validated p.G85 0.984 198 0% 89 23.6% 0 - - - - HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like REG4 83998 genome.wustl.edu 37 1 120351373 120351373 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032044.3 -1 validated p.R7Q 0.003 65 0% 73 19.2% 0 - unknown(0) tolerated(0.33) - NULL NBPF7 343505 genome.wustl.edu 37 1 120385125 120385125 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001047980.1 -1 predicted p.M90R 0.006 399 0% 207 19.8% 0 - - - - NULL NOTCH2 4853 genome.wustl.edu 37 1 120464938 120464938 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024408.2 -1 reviewed p.P1712S 1.000 209 0% 136 16.9% 9 44.4% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL FCGR1B 2210 genome.wustl.edu 37 1 120930078 120930078 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017986.2 -1 validated p.R175C 0.003 686 0% 556 18.7% 25 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin NBPF9 400818 genome.wustl.edu 37 1 144818011 144818011 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037675.2 +1 predicted p.L296F 0.004 2056 0% 724 5.4% 1 0% possibly_damaging(0.911) deleterious(0.03) deleterious(0.728) NULL NBPF9 400818 genome.wustl.edu 37 1 144828649 144828649 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037675.2 +1 predicted p.S650I 0.001 1135 0% 372 8.1% 10 10% probably_damaging(0.965) deleterious(0) deleterious(0.851) NULL PDE4DIP 9659 genome.wustl.edu 37 1 144867957 144867957 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014644.4 -1 validated p.G1828C 0.839 570 0% 151 11.3% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PDE4DIP 9659 genome.wustl.edu 37 1 144882449 144882449 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014644.4 -1 validated p.H1190 0.047 245 0% 85 15.3% 0 - - - - NULL PDE4DIP 9659 genome.wustl.edu 37 1 144906474 144906474 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014644.4 -1 validated p.A795T 1.000 144 0% 44 27.3% 21 9.5% probably_damaging(0.978) deleterious(0.02) deleterious(0.803) NULL PDE4DIP 9659 genome.wustl.edu 37 1 144917820 144917820 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014644.4 -1 validated p.E489A 1.000 618 0% 443 11.3% 8 12.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL PDE4DIP 9659 genome.wustl.edu 37 1 144918848 144918848 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014644.4 -1 validated p.K446N 1.000 885 0% 802 14.3% 6 50% possibly_damaging(0.88) deleterious(0) deleterious(0.788) NULL TXNIP 10628 genome.wustl.edu 37 1 145440962 145440962 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006472.3 +1 validated p.P350H 1.000 489 0% 278 20.5% 101 5.9% probably_damaging(0.975) deleterious(0) deleterious(0.861) NULL ITGA10 8515 genome.wustl.edu 37 1 145532599 145532599 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003637.3 +1 reviewed p.G351V 1.000 383 0.3% 229 21.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain ANKRD35 148741 genome.wustl.edu 37 1 145562258 145562258 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144698.3 +1 validated p.S649N 1.000 26 0% 26 23.1% 0 - benign(0) tolerated(0.37) neutral(0.019) NULL PIAS3 10401 genome.wustl.edu 37 1 145585428 145585428 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006099.3 +1 reviewed p.T565S 1.000 74 0% 88 23.9% 36 50% benign(0.001) tolerated(0.75) neutral(0.002) NULL POLR3C 10623 genome.wustl.edu 37 1 145606308 145606308 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006468.6 -1 provisional p.A215 1.000 561 0% 399 20.1% 29 44.8% - - - HMMPfam_RNA_pol_Rpc82 CHD1L 9557 genome.wustl.edu 37 1 146766137 146766137 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004284.3 +1 validated p.N851 1.000 558 0% 168 22% 54 40.7% - - - NULL BCL9 607 genome.wustl.edu 37 1 147083652 147083652 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004326.2 +1 reviewed p.P6H 1.000 191 0% 141 10.6% 13 30.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL BCL9 607 genome.wustl.edu 37 1 147091959 147091959 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004326.2 +1 reviewed p.Q666 1.000 75 0% 73 21.9% 14 50% - - - NULL BCL9 607 genome.wustl.edu 37 1 147092380 147092380 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004326.2 +1 reviewed p.D807N 1.000 40 0% 37 16.2% 17 52.9% probably_damaging(0.979) tolerated(0.57) neutral(0.428) NULL BCL9 607 genome.wustl.edu 37 1 147096498 147096498 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004326.2 +1 reviewed p.T1340I 0.791 75 0% 57 21.1% 41 41.4% benign(0) tolerated(0.09) neutral(0.296) NULL GJA5 2702 genome.wustl.edu 37 1 147230791 147230791 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005266.5 -1 reviewed p.R186C 1.000 110 0% 43 14% 5 0% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC GJA5 2702 genome.wustl.edu 37 1 147231051 147231051 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005266.5 -1 reviewed p.T99N 0.009 154 0% 59 25.4% 0 - possibly_damaging(0.78) tolerated(0.29) neutral(0.321) HMMPfam_Connexin HIST2H3PS2 440686 genome.wustl.edu 37 1 149400456 149400456 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000369176 -1 known p.S29 1.000 58 0% 51 15.7% 0 - - - - superfamily_Histone-fold FAM72C 554282 genome.wustl.edu 37 1 149459477 149459477 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000369175 -1 known p.L25 1.000 1273 0% 819 12.3% 4 25% - - - NULL FCGR1A 2209 genome.wustl.edu 37 1 149761785 149761785 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000566.3 +1 reviewed p.Y245 0.869 257 0% 297 20.5% 52 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin MTMR11 10903 genome.wustl.edu 37 1 149908481 149908481 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439741 -1 known p.E20D 0.994 545 0% 279 18.3% 3 66.6% benign(0.002) tolerated(0.23) neutral(0.042) NULL VPS45 11311 genome.wustl.edu 37 1 150054072 150054072 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007259.3 +1 reviewed p.D310G 1.000 299 0% 103 19.4% 24 33.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins PLEKHO1 51177 genome.wustl.edu 37 1 150131650 150131650 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016274.4 +1 provisional p.L388M 1.000 54 0% 47 25.5% 181 10.4% probably_damaging(0.998) tolerated(0.16) deleterious(0.534) NULL C1orf54 79630 genome.wustl.edu 37 1 150248164 150248164 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024579.3 +1 validated p.D49N 0.888 449 0% 368 22.6% 58 1.7% unknown(0) tolerated(1) - NULL C1orf51 148523 genome.wustl.edu 37 1 150259341 150259341 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144697.2 +1 predicted p.A378D 0.003 106 0% 110 12.7% 1 0% benign(0.001) deleterious(0.02) neutral(0.383) NULL PRPF3 9129 genome.wustl.edu 37 1 150310712 150310712 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004698.2 +1 reviewed p.A371V 1.000 238 0% 110 13.6% 27 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PRP3 RPRD2 23248 genome.wustl.edu 37 1 150443991 150443991 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015203.3 +1 validated p.S856F 1.000 74 0% 64 21.9% 19 47.3% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL RPRD2 23248 genome.wustl.edu 37 1 150444576 150444576 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015203.3 +1 validated p.A1051D 0.001 97 1% 64 23.4% 27 59.2% benign(0.075) deleterious(0) neutral(0.450) NULL RPRD2 23248 genome.wustl.edu 37 1 150444739 150444739 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015203.3 +1 validated p.T1105 0.831 86 3.5% 79 13.9% 31 16.1% - - - NULL ECM1 1893 genome.wustl.edu 37 1 150483380 150483380 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004425.3 +1 reviewed p.S138 0.000 17 0% 29 20.7% 29 0% - - - HMMPfam_ECM1 ADAMTSL4 54507 genome.wustl.edu 37 1 150529682 150529682 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019032.4 +1 reviewed p.G640C 0.996 27 0% 23 21.7% 2 0% benign(0.382) tolerated(0.2) neutral(0.171) NULL ADAMTSL4 54507 genome.wustl.edu 37 1 150529979 150529979 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019032.4 +1 reviewed p.R686H 0.998 15 0% 22 22.7% 0 - benign(0.006) tolerated(0.57) neutral(0.006) superfamily_TSP-1 type 1 repeat LOC100289061 100289061 genome.wustl.edu 37 1 150531435 150531435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342133.1 -1 model p.A98T 1.000 12 0% 27 18.5% 0 - - - - NULL ARNT 405 genome.wustl.edu 37 1 150807021 150807021 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001668.2 -1 reviewed p.R266* 1.000 353 0% 157 17.2% 7 0% - - - HMMPfam_PAS SETDB1 9869 genome.wustl.edu 37 1 150933439 150933439 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145415.1 +1 reviewed p.G967 0.997 337 0% 172 27.3% 24 45.8% - - - HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain SETDB1 9869 genome.wustl.edu 37 1 150935118 150935118 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145415.1 +1 reviewed p.G1072* 1.000 181 0% 129 23.3% 21 4.7% - - - HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain ANXA9 8416 genome.wustl.edu 37 1 150956777 150956777 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003568.2 +1 validated p.Q96H 1.000 94 0% 112 13.4% 2 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX PRUNE 58497 genome.wustl.edu 37 1 151006281 151006281 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021222.1 +1 provisional e8-1 1.000 198 0% 127 18.1% 1 100% - - - - TNFAIP8L2 79626 genome.wustl.edu 37 1 151131285 151131285 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024575.3 +1 validated p.V38M 1.000 104 0% 61 29.5% 15 0% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_DUF758 TNFAIP8L2 79626 genome.wustl.edu 37 1 151131506 151131506 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024575.3 +1 validated p.F111 0.082 102 0% 72 16.7% 14 0% - - - HMMPfam_DUF758 LYSMD1 388695 genome.wustl.edu 37 1 151134369 151134369 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212551.4 -1 validated p.A130T 0.000 568 0% 352 19% 11 18.1% benign(0.006) tolerated(0.3) neutral(0.029) NULL LYSMD1 388695 genome.wustl.edu 37 1 151137686 151137686 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212551.4 -1 validated p.Q17* 0.119 98 0% 50 16% 4 50% - - - NULL PIP5K1A 8394 genome.wustl.edu 37 1 151204815 151204815 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135638.1 +1 validated p.F154V 1.000 574 0% 234 18.8% 18 38.8% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_SM00330,superfamily_SAICAR synthase-like PSMD4 5710 genome.wustl.edu 37 1 151234659 151234659 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002810.2 +1 reviewed p.R17W 1.000 243 0% 169 16% 222 36.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00327,superfamily_vWA-like PSMD4 5710 genome.wustl.edu 37 1 151238020 151238020 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002810.2 +1 reviewed p.L197M 1.000 169 0% 92 25% 234 21.3% benign(0) tolerated(0.21) neutral(0.044) NULL ZNF687 57592 genome.wustl.edu 37 1 151259493 151259493 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020832.1 +1 provisional p.S242 0.011 69 0% 70 15.7% 6 33.3% - - - NULL ZNF687 57592 genome.wustl.edu 37 1 151260514 151260514 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020832.1 +1 provisional p.R583C 0.992 24 0% 40 32.5% 20 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00355 ZNF687 57592 genome.wustl.edu 37 1 151261869 151261869 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426871 +1 known p.A432V 0.998 203 0% 156 25% 29 31% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF687 57592 genome.wustl.edu 37 1 151263367 151263367 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020832.1 +1 provisional p.D1132 0.072 86 0% 81 19.8% 14 50% - - - superfamily_C2H2 and C2HC zinc fingers PI4KB 5298 genome.wustl.edu 37 1 151288077 151288077 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002651.1 -1 provisional p.S306I 1.000 690 0% 443 24.6% 27 37% benign(0.249) deleterious(0.04) neutral(0.374) NULL RFX5 5993 genome.wustl.edu 37 1 151317006 151317006 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000449.3 -1 reviewed p.Y120* 1.000 142 0% 81 17.3% 14 28.5% - - - HMMPfam_RFX_DNA_binding,superfamily_SSF46785 RFX5 5993 genome.wustl.edu 37 1 151318403 151318403 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000449.3 -1 reviewed e2+1 1.000 741 0% 447 22.6% 0 - - - - - POGZ 23126 genome.wustl.edu 37 1 151377326 151377326 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015100.2 -1 reviewed p.E1395D 1.000 444 0% 258 19% 21 19% probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL POGZ 23126 genome.wustl.edu 37 1 151380717 151380717 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015100.2 -1 reviewed e14-1 1.000 209 0.5% 130 20.8% 1 100% - - - - CGN 57530 genome.wustl.edu 37 1 151491204 151491204 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020770.2 +1 validated p.S70I 1.000 208 0% 164 15.9% 11 45.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CGN 57530 genome.wustl.edu 37 1 151496752 151496752 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020770.2 +1 validated p.G440V 0.073 260 0% 229 16.2% 6 0% probably_damaging(0.972) tolerated(0.1) deleterious(0.700) NULL THEM4 117145 genome.wustl.edu 37 1 151861795 151861795 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053055.3 -1 reviewed p.S114I 0.989 458 0% 165 14.5% 19 36.8% probably_damaging(0.982) tolerated(0.13) deleterious(0.679) superfamily_SSF54637 THEM4 117145 genome.wustl.edu 37 1 151861809 151861809 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053055.3 -1 reviewed p.Q109H 0.000 457 0% 162 27.8% 17 47% probably_damaging(0.966) deleterious(0.01) deleterious(0.814) NULL TCHHL1 126637 genome.wustl.edu 37 1 152058455 152058455 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008536.1 -1 provisional p.P568L 0.000 224 0% 207 19.3% 0 - possibly_damaging(0.796) tolerated(0.69) neutral(0.301) NULL TCHH 7062 genome.wustl.edu 37 1 152080821 152080821 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007113.2 -1 provisional p.D1624 0.000 363 0% 300 25.7% 1 0% - - - NULL HRNR 388697 genome.wustl.edu 37 1 152192979 152192979 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009931.1 -1 validated p.Q376* 0.000 258 0% 171 26.3% 0 - - - - NULL FLG 2312 genome.wustl.edu 37 1 152275228 152275228 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002016.1 -1 reviewed p.I4045K 0.000 413 0% 161 19.3% 0 - possibly_damaging(0.847) deleterious(0) deleterious(0.770) NULL FLG 2312 genome.wustl.edu 37 1 152281807 152281807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002016.1 -1 reviewed p.S1852F 0.002 652 0% 350 20% 0 - unknown(0) deleterious(0.02) - NULL FLG 2312 genome.wustl.edu 37 1 152284876 152284876 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002016.1 -1 reviewed p.S829F 0.001 743 0% 354 21.2% 0 - unknown(0) deleterious(0.01) - NULL FLG 2312 genome.wustl.edu 37 1 152285578 152285578 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002016.1 -1 reviewed p.A595V 0.000 813 0.1% 405 15.6% 0 - probably_damaging(0.997) tolerated(0.42) deleterious(0.480) HMMPfam_Filaggrin FLG2 388698 genome.wustl.edu 37 1 152323643 152323643 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014342.2 -1 provisional p.R2207* 0.000 1126 0% 319 21% 0 - - - - NULL LCE2A 353139 genome.wustl.edu 37 1 152671499 152671499 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178428.3 +1 validated p.S41Y 0.571 220 0% 231 13.9% 0 - unknown(0) - - NULL SPRR2A 6700 genome.wustl.edu 37 1 153028996 153028996 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005988.2 -1 validated p.K72N 0.973 830 0% 569 23.6% 0 - unknown(0) - - NULL INTS3 65123 genome.wustl.edu 37 1 153723638 153723638 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023015.3 +1 validated p.D218Y 1.000 246 0% 147 12.9% 28 21.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL INTS3 65123 genome.wustl.edu 37 1 153736659 153736659 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023015.3 +1 validated p.H629 1.000 272 0% 172 11.6% 48 14.5% - - - NULL SLC27A3 11000 genome.wustl.edu 37 1 153750798 153750798 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000458027 +1 known p.G193E 0.003 128 0% 171 18.7% 29 31% - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like SLC27A3 11000 genome.wustl.edu 37 1 153752315 153752315 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024330.1 +1 provisional p.T677I 1.000 87 0% 124 12.9% 56 23.2% benign(0.002) tolerated(0.65) neutral(0.003) superfamily_Acetyl-CoA synthetase-like GATAD2B 57459 genome.wustl.edu 37 1 153784575 153784575 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020699.2 -1 validated p.L485I 0.966 182 0% 118 15.3% 7 42.8% possibly_damaging(0.892) tolerated(0.21) neutral(0.395) NULL DENND4B 9909 genome.wustl.edu 37 1 153913893 153913893 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014856.2 -1 validated p.N360S 1.000 484 0% 455 21.5% 9 11.1% benign(0.073) tolerated(0.4) neutral(0.021) HMMPfam_DENN,HMMSmart_DENN DENND4B 9909 genome.wustl.edu 37 1 153914519 153914519 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014856.2 -1 validated p.A294V 0.072 40 0% 21 33.3% 4 25% benign(0.221) tolerated(0.37) neutral(0.041) NULL CRTC2 200186 genome.wustl.edu 37 1 153924679 153924679 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181715.1 -1 provisional p.T271M 1.000 270 0% 262 18.7% 51 37.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC39A1 27173 genome.wustl.edu 37 1 153934770 153934770 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014437.3 -1 provisional p.A82T 1.000 116 0% 118 21.2% 161 42.8% possibly_damaging(0.932) deleterious(0.01) deleterious(0.784) HMMPfam_Zip NUP210L 91181 genome.wustl.edu 37 1 154034125 154034125 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207308.2 -1 validated p.Q860 0.959 211 0% 125 23.2% 0 - - - - NULL NUP210L 91181 genome.wustl.edu 37 1 154099870 154099870 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207308.2 -1 validated p.R368* 0.695 301 0% 269 18.2% 0 - - - - NULL C1orf43 25912 genome.wustl.edu 37 1 154192334 154192334 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098616.1 -1 validated p.P49H 1.000 206 0% 305 22% 97 48.4% probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_NICE-3 UBAP2L 9898 genome.wustl.edu 37 1 154242839 154242839 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000310038 +1 known p.A368S 1.000 31 0% 28 32.1% 74 32.4% unknown(0) - - NULL ATP8B2 57198 genome.wustl.edu 37 1 154316032 154316032 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020452.3 +1 reviewed p.M615I 0.004 132 0% 111 16.2% 10 40% benign(0.001) tolerated(0.18) neutral(0.056) superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665 ATP8B2 57198 genome.wustl.edu 37 1 154318928 154318928 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020452.3 +1 reviewed p.S1033 0.984 135 0% 134 23.1% 29 20.6% - - - superfamily_SSF81665 IL6R 3570 genome.wustl.edu 37 1 154407574 154407574 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000565.2 +1 reviewed p.R250I 0.418 133 0% 166 18.1% 7 42.8% possibly_damaging(0.716) tolerated(0.49) neutral(0.270) PatternScan_HEMATOPO_REC_L_F3,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SHE 126669 genome.wustl.edu 37 1 154474006 154474006 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010846.2 -1 validated p.S166I 0.346 252 0% 381 17.8% 1 0% benign(0.163) tolerated(0.1) neutral(0.301) NULL TDRD10 126668 genome.wustl.edu 37 1 154480958 154480958 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098475.1 +1 validated e3+1 0.972 822 0% 751 23.7% 0 - - - - - UBE2Q1 55585 genome.wustl.edu 37 1 154524926 154524926 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017582.6 -1 reviewed p.E277K 1.000 398 0% 357 22.1% 107 38.3% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like ADAR 103 genome.wustl.edu 37 1 154557302 154557302 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111.3 -1 reviewed p.F1221I 1.000 283 0% 203 24.1% 88 38.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00552 ADAR 103 genome.wustl.edu 37 1 154574123 154574123 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111.3 -1 reviewed p.A332D 0.004 337 0% 260 23.5% 27 18.5% benign(0.315) deleterious(0.01) deleterious(0.504) "HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_""Winged helix"" DNA-binding domain" KCNN3 3782 genome.wustl.edu 37 1 154698412 154698412 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002249.4 -1 reviewed p.D561N 1.000 207 0% 117 35.9% 14 0% possibly_damaging(0.869) deleterious(0) deleterious(0.782) HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,superfamily_Voltage-gated potassium channels PMVK 10654 genome.wustl.edu 37 1 154901546 154901546 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006556.3 -1 validated p.G89D 1.000 180 0% 99 24.2% 120 23.3% possibly_damaging(0.95) deleterious(0) deleterious(0.838) HMMPfam_P-mevalo_kinase,superfamily_P-loop containing nucleoside triphosphate hydrolases CKS1B 1163 genome.wustl.edu 37 1 154951243 154951243 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001826.2 +1 reviewed p.P77L 1.000 381 0% 251 19.9% 347 47.2% unknown(0) deleterious(0.01) - NULL DCST2 127579 genome.wustl.edu 37 1 155003663 155003663 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144622.2 -1 validated p.R263C 0.881 94 0% 61 9.8% 3 33.3% probably_damaging(1) tolerated(0.2) deleterious(0.549) NULL ADAM15 8751 genome.wustl.edu 37 1 155030752 155030752 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207197.1 +1 reviewed p.Q584H 0.989 38 0% 74 25.7% 126 32.5% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_ADAM_CR,HMMSmart_SM00608 ADAM15 8751 genome.wustl.edu 37 1 155034729 155034729 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207191.1 +1 reviewed p.G739D 0.995 13 0% 15 26.7% 193 30.5% probably_damaging(0.989) tolerated(0.42) neutral(0.454) NULL ADAM15 8751 genome.wustl.edu 37 1 155034808 155034808 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207197.1 +1 reviewed p.P838T 0.017 25 0% 22 36.4% 242 37.1% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL TRIM46 80128 genome.wustl.edu 37 1 155151011 155151011 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025058.3 +1 validated p.A403T 1.000 124 0% 144 22.9% 1 100% probably_damaging(0.997) tolerated(0.35) deleterious(0.487) NULL MUC1 4582 genome.wustl.edu 37 1 155161969 155161969 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000425082 -1 known p.S55N 0.000 181 0% 317 12.6% 676 19.2% benign(0.021) tolerated(0.42) neutral(0.015) NULL GBAP1 2630 genome.wustl.edu 37 1 155184886 155184886 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440295 -1 known p.V313I 0.556 209 0% 200 20% 6 33.3% - - - NULL FAM189B 10712 genome.wustl.edu 37 1 155218219 155218219 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006589.2 -1 validated p.A519V 1.000 403 0% 378 15.3% 52 40.3% possibly_damaging(0.842) deleterious(0) deleterious(0.766) NULL SCAMP3 10067 genome.wustl.edu 37 1 155231472 155231472 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005698.2 -1 reviewed p.V40 1.000 156 0% 153 20.9% 50 8% - - - NULL CLK2 1196 genome.wustl.edu 37 1 155237841 155237841 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003993.2 -1 reviewed p.V210M 0.998 655 0% 633 25% 47 31.9% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CLK2 1196 genome.wustl.edu 37 1 155238112 155238112 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003993.2 -1 reviewed p.R175* 1.000 229 0% 265 16.2% 19 15.7% - - - HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase CLK2 1196 genome.wustl.edu 37 1 155240714 155240714 + Missense_Mutation SNP G G A rs12749700 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003993.2 -1 reviewed p.R19C 1.000 88 0% 129 12.4% 18 22.2% unknown(0) tolerated(0.24) - NULL RUSC1 23623 genome.wustl.edu 37 1 155291627 155291627 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105203.1 +1 validated p.S21 0.961 169 0% 155 20.6% 1 0% - - - NULL RUSC1 23623 genome.wustl.edu 37 1 155296779 155296779 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105203.1 +1 validated p.R757H 0.000 34 0% 31 16.1% 48 47.9% probably_damaging(0.995) tolerated(0.06) deleterious(0.780) NULL ASH1L 55870 genome.wustl.edu 37 1 155313253 155313253 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018489.2 -1 reviewed p.H2715 0.998 591 0% 189 21.2% 8 50% - - - HMMPfam_BAH,HMMSmart_SM00439 ASH1L 55870 genome.wustl.edu 37 1 155448699 155448699 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018489.2 -1 reviewed p.R1321Q 1.000 353 0% 115 26.1% 2 100% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL MSTO1 55154 genome.wustl.edu 37 1 155582738 155582738 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018116.2 +1 validated p.A357V 1.000 816 0% 679 21.9% 27 37% probably_damaging(0.978) tolerated(0.37) neutral(0.440) NULL DAP3 7818 genome.wustl.edu 37 1 155686868 155686868 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004632.2 +1 reviewed p.Q39H 0.997 170 0% 116 12.9% 88 29.5% probably_damaging(0.964) tolerated(0.08) deleterious(0.706) NULL SYT11 23208 genome.wustl.edu 37 1 155837770 155837770 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152280.4 +1 reviewed p.V17M 1.000 274 0% 124 22.6% 1 0% possibly_damaging(0.644) tolerated(0.13) deleterious(0.478) NULL SYT11 23208 genome.wustl.edu 37 1 155851194 155851194 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152280.4 +1 reviewed p.I397 1.000 126 0% 68 20.6% 5 0% - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB ARHGEF2 9181 genome.wustl.edu 37 1 155920098 155920098 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004723.3 -1 validated p.S932N 1.000 47 0% 66 12.1% 28 7.1% possibly_damaging(0.662) deleterious(0) deleterious(0.678) NULL LMNA 4000 genome.wustl.edu 37 1 156105746 156105746 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170707.2 +1 reviewed p.R331W 1.000 53 0% 32 28.1% 358 44.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament SEMA4A 64218 genome.wustl.edu 37 1 156124433 156124433 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022367.2 +1 provisional p.L22I 0.003 80 0% 73 23.3% 0 - benign(0.055) tolerated(0.21) neutral(0.048) NULL SEMA4A 64218 genome.wustl.edu 37 1 156144612 156144612 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022367.2 +1 provisional e11-1 0.970 104 0% 94 20.2% 0 - - - - - PMF1 11243 genome.wustl.edu 37 1 156203455 156203455 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007221.2 +1 validated p.E102* 0.995 380 0% 297 25.3% 82 2.4% - - - HMMPfam_Nnf1 TMEM79 84283 genome.wustl.edu 37 1 156255562 156255562 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032323.2 +1 validated p.P182H 0.011 30 0% 32 25% 8 12.5% probably_damaging(1) tolerated(0.22) deleterious(0.542) NULL C1orf85 112770 genome.wustl.edu 37 1 156263328 156263328 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144580.1 -1 provisional p.A280T 0.146 262 0% 186 26.9% 52 25% benign(0.006) tolerated(0.43) neutral(0.013) NULL VHLL 391104 genome.wustl.edu 37 1 156268619 156268619 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004319.2 -1 reviewed p.S121Y 0.077 330 0% 247 23.5% 0 - - - - HMMPfam_VHL,superfamily_SSF49468 CCT3 7203 genome.wustl.edu 37 1 156281948 156281948 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005998.3 -1 reviewed p.A347T 1.000 330 0% 268 26.5% 356 37.3% benign(0.003) deleterious(0.01) neutral(0.406) HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849 MEF2D 4209 genome.wustl.edu 37 1 156446853 156446853 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005920.2 -1 provisional p.D269G 1.000 271 0% 236 25.4% 11 9% possibly_damaging(0.864) tolerated(0.07) deleterious(0.653) NULL IQGAP3 128239 genome.wustl.edu 37 1 156507040 156507040 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178229.4 -1 validated p.L1119I 1.000 349 0% 185 18.9% 11 45.4% benign(0.002) tolerated(1) - HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP IQGAP3 128239 genome.wustl.edu 37 1 156521765 156521765 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178229.4 -1 validated e14+1 1.000 199 0% 128 17.2% 0 - - - - - IQGAP3 128239 genome.wustl.edu 37 1 156539179 156539179 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178229.4 -1 validated p.E38D 1.000 53 0% 52 19.2% 2 0% possibly_damaging(0.749) deleterious(0) deleterious(0.720) HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology TTC24 164118 genome.wustl.edu 37 1 156552060 156552060 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000368237 +1 known p.Q248H 1.000 60 0% 72 20.8% 2 0% probably_damaging(0.992) deleterious(0.04) deleterious(0.796) superfamily_SSF48452 TTC24 164118 genome.wustl.edu 37 1 156552849 156552849 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105669.2 +1 provisional p.R29Q 1.000 38 0% 49 18.4% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_TPR-like GPATCH4 54865 genome.wustl.edu 37 1 156565634 156565634 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015590.2 -1 validated p.R167C 1.000 50 0% 69 15.9% 39 28.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NES 10763 genome.wustl.edu 37 1 156640790 156640790 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006617.1 -1 reviewed p.E1064* 0.024 21 0% 29 17.2% 7 0% - - - NULL ISG20L2 81875 genome.wustl.edu 37 1 156697197 156697197 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030980.1 -1 provisional p.A83D 0.011 157 0% 168 27.4% 16 18.7% possibly_damaging(0.481) deleterious(0.03) deleterious(0.524) NULL PRCC 5546 genome.wustl.edu 37 1 156764533 156764533 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005973.4 +1 reviewed p.L419P 1.000 408 0% 141 16.3% 105 20% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL INSRR 3645 genome.wustl.edu 37 1 156812301 156812301 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014215.1 -1 validated e18-1 1.000 112 0.9% 136 25% 0 - - - - - NTRK1 4914 genome.wustl.edu 37 1 156849949 156849949 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002529.3 +1 reviewed p.E735D 1.000 46 0% 35 14.3% 0 - possibly_damaging(0.677) deleterious(0.02) deleterious(0.624) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ARHGEF11 9826 genome.wustl.edu 37 1 156916532 156916532 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198236.1 -1 reviewed p.F872L 1.000 171 0% 117 13.7% 15 13.3% possibly_damaging(0.725) tolerated(0.16) neutral(0.323) HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain ARHGEF11 9826 genome.wustl.edu 37 1 156949031 156949031 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198236.1 -1 reviewed p.K107 1.000 409 0% 194 10.3% 6 0% - - - HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ ETV3 2117 genome.wustl.edu 37 1 157095477 157095477 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145312.1 -1 validated p.P232H 1.000 286 0% 135 23.7% 2 50% probably_damaging(0.997) deleterious(0.05) deleterious(0.811) NULL ETV3 2117 genome.wustl.edu 37 1 157095675 157095675 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145312.1 -1 validated p.P166L 0.874 185 0.5% 102 20.6% 3 33.3% benign(0.051) deleterious(0) neutral(0.448) "superfamily_""Winged helix"" DNA-binding domain" FCRL5 83416 genome.wustl.edu 37 1 157516938 157516938 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031281.2 -1 validated p.V34 0.005 264 0% 58 27.6% 1 0% - - - HMMSmart_SM00409,superfamily_Immunoglobulin FCRL3 115352 genome.wustl.edu 37 1 157667043 157667043 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052939.3 -1 reviewed p.R244I 0.000 204 0% 81 23.5% 2 0% benign(0) deleterious(0.02) neutral(0.383) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin KIRREL 55243 genome.wustl.edu 37 1 158063226 158063226 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018240.5 +1 validated p.R523 1.000 218 0% 165 18.8% 16 43.7% - - - NULL CD1A 909 genome.wustl.edu 37 1 158226842 158226842 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001763.2 +1 reviewed p.V291I 0.011 196 0% 129 27.9% 7 0% benign(0) tolerated(1) - HMMPfam_C1-set,superfamily_SSF48726 CD1C 911 genome.wustl.edu 37 1 158263043 158263043 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001765.2 +1 reviewed p.V311L 0.001 1075 0% 381 20.5% 4 0% benign(0.047) tolerated(0.09) neutral(0.299) NULL SPTA1 6708 genome.wustl.edu 37 1 158637833 158637833 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003126.2 -1 reviewed p.S618N 0.998 421 0% 195 23.6% 0 - possibly_damaging(0.762) deleterious(0.02) deleterious(0.665) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTA1 6708 genome.wustl.edu 37 1 158651365 158651365 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003126.2 -1 reviewed p.Q161H 0.998 287 0% 47 23.4% 0 - benign(0.001) tolerated(0.5) neutral(0.010) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat OR6K6 128371 genome.wustl.edu 37 1 158724737 158724737 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005184.1 +1 provisional p.M44I 0.000 334 0% 244 22.1% 0 - benign(0) deleterious(0.01) neutral(0.406) superfamily_Family A G protein-coupled receptor-like CADM3 57863 genome.wustl.edu 37 1 159163756 159163756 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021189.3 +1 validated p.S240N 0.000 211 0% 128 32% 0 - benign(0) tolerated(0.5) neutral(0.010) HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726 DARC 2532 genome.wustl.edu 37 1 159175859 159175859 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122951.1 +1 reviewed p.H212 0.000 203 0% 89 24.7% 45 0% - - - NULL FCRL6 343413 genome.wustl.edu 37 1 159784013 159784013 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004310.2 +1 validated p.H360Y 0.000 395 0.3% 181 11% 11 0% benign(0.01) tolerated(0.1) neutral(0.287) NULL C1orf204 284677 genome.wustl.edu 37 1 159810526 159810526 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134233.1 -1 predicted p.P191 0.044 128 0% 73 23.3% 0 - - - - NULL CCDC19 25790 genome.wustl.edu 37 1 159842755 159842755 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426543 -1 known p.G380* 0.999 270 0% 136 25.7% 23 56.5% benign(0.066) tolerated(0.09) neutral(0.301) NULL IGSF9 57549 genome.wustl.edu 37 1 159898557 159898557 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135050.1 -1 validated p.R874Q 0.000 11 0% 15 33.3% 2 0% benign(0.006) tolerated(0.5) neutral(0.010) NULL ATP1A2 477 genome.wustl.edu 37 1 160098787 160098787 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000702.3 +1 reviewed p.R412* 1.000 109 0% 77 22.1% 0 - - - - HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665 ATP1A4 480 genome.wustl.edu 37 1 160144465 160144465 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144699.3 +1 reviewed p.V747I 1.000 259 0.4% 89 14.6% 0 - possibly_damaging(0.734) deleterious(0) deleterious(0.713) superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M CASQ1 844 genome.wustl.edu 37 1 160165779 160165779 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001231.4 +1 reviewed p.S242 0.758 229 0% 187 21.9% 0 - - - - HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd DCAF8 50717 genome.wustl.edu 37 1 160188740 160188740 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015726.3 -1 reviewed p.H487N 1.000 216 0% 114 25.4% 56 30.3% possibly_damaging(0.925) deleterious(0) deleterious(0.818) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 DCAF8 50717 genome.wustl.edu 37 1 160209667 160209667 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015726.3 -1 reviewed p.Q181 1.000 78 0% 55 29.1% 41 43.9% - - - superfamily_WD40 repeat-like DCAF8 50717 genome.wustl.edu 37 1 160210070 160210070 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015726.3 -1 reviewed p.S47N 1.000 141 0% 101 21.8% 32 43.7% probably_damaging(0.959) deleterious(0) deleterious(0.847) NULL PEX19 5824 genome.wustl.edu 37 1 160249616 160249616 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002857.3 -1 reviewed p.P264H 1.000 180 0% 95 21.1% 23 34.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pex19 PEX19 5824 genome.wustl.edu 37 1 160252884 160252884 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002857.3 -1 reviewed p.S66A 1.000 167 0% 97 18.6% 24 41.6% unknown(0) - - HMMPfam_Pex19 NCSTN 23385 genome.wustl.edu 37 1 160318809 160318809 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015331.2 +1 reviewed p.G71W 1.000 264 0% 107 12.1% 35 8.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL VANGL2 57216 genome.wustl.edu 37 1 160385639 160385639 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020335.1 +1 validated p.E4D 1.000 16 0% 24 25% 2 0% unknown(0) tolerated(0.31) - NULL VANGL2 57216 genome.wustl.edu 37 1 160388873 160388873 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020335.1 +1 validated p.A92T 1.000 85 0% 95 22.1% 6 33.3% benign(0) tolerated(0.71) neutral(0.002) HMMPfam_Strabismus SLAMF1 6504 genome.wustl.edu 37 1 160604472 160604472 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003037.2 -1 validated p.V211M 0.022 461 0% 431 19.5% 8 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL LY9 4063 genome.wustl.edu 37 1 160797575 160797575 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002348.2 +1 validated p.P646H 0.550 243 0% 105 22.9% 12 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL USF1 7391 genome.wustl.edu 37 1 161009800 161009800 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007122.3 -1 reviewed e10-1 1.000 320 0% 253 11.1% 24 87.5% - - - - ARHGAP30 257106 genome.wustl.edu 37 1 161017742 161017742 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025598.1 -1 validated p.E1023 0.999 134 0% 143 23.8% 36 0% - - - NULL ARHGAP30 257106 genome.wustl.edu 37 1 161018200 161018200 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025598.1 -1 validated p.E871K 0.000 257 0% 244 23.4% 34 0% benign(0.054) deleterious(0.01) neutral(0.409) NULL USP21 27005 genome.wustl.edu 37 1 161130638 161130638 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014443.2 +1 reviewed p.R70W 0.999 59 0% 65 27.7% 13 23% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PPOX 5498 genome.wustl.edu 37 1 161138868 161138868 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000309.3 +1 reviewed p.E234 1.000 97 0% 108 24.1% 13 53.8% - - - HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain B4GALT3 8703 genome.wustl.edu 37 1 161141753 161141753 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003779.2 -1 reviewed p.D345 1.000 170 0% 117 15.4% 46 21.7% - - - HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases B4GALT3 8703 genome.wustl.edu 37 1 161143749 161143749 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003779.2 -1 reviewed p.H194Y 1.000 263 0% 225 21.3% 37 37.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases ADAMTS4 9507 genome.wustl.edu 37 1 161161091 161161091 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005099.4 -1 reviewed p.Q784R 1.000 53 0% 39 23.1% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_ADAM_spacer1 NDUFS2 4720 genome.wustl.edu 37 1 161183479 161183479 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004550.4 +1 reviewed p.R418H 1.000 297 0% 148 18.9% 264 39% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_Complex1_49kDa,superfamily_SSF56762 MPZ 4359 genome.wustl.edu 37 1 161276237 161276237 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000530.6 -1 reviewed p.V166I 1.000 241 0% 193 13.5% 0 - benign(0.415) tolerated(0.1) neutral(0.421) NULL SDHC 6391 genome.wustl.edu 37 1 161310401 161310401 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003001.3 +1 reviewed p.A66V 0.086 764 0% 388 20.6% 147 42.8% benign(0) tolerated(0.61) neutral(0.004) HMMPfam_Sdh_cyt,PatternScan_SDH_CYT_1,superfamily_SSF81343 SDHC 6391 genome.wustl.edu 37 1 161332149 161332149 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003001.3 +1 reviewed p.P146S 0.781 454 0% 240 16.7% 136 43.3% benign(0) tolerated(0.17) neutral(0.059) HMMPfam_Sdh_cyt,superfamily_SSF81343 FCGR2A 2212 genome.wustl.edu 37 1 161476347 161476347 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136219.1 +1 reviewed p.S110 0.026 218 0% 131 16.8% 10 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin FCRLA 84824 genome.wustl.edu 37 1 161680570 161680570 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032738.3 +1 reviewed p.Q51* 0.555 105 0% 50 12% 0 - - - - NULL ATF6 22926 genome.wustl.edu 37 1 161789483 161789483 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007348.2 +1 validated p.R324C 0.974 179 0% 102 18.6% 26 30.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1 OLFML2B 25903 genome.wustl.edu 37 1 161993047 161993047 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015441.1 -1 provisional p.Q58H 1.000 182 0% 248 19% 9 0% probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL NOS1AP 9722 genome.wustl.edu 37 1 162325137 162325137 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014697.2 +1 reviewed p.G252 0.013 129 0% 62 17.7% 2 0% - - - NULL C1orf226 400793 genome.wustl.edu 37 1 162353030 162353030 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085375.1 +1 validated p.R126* 1.000 123 0% 87 20.7% 3 33.3% - - - NULL SH2D1B 117157 genome.wustl.edu 37 1 162372547 162372547 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053282.4 -1 validated p.H60 0.009 696 0% 400 22.5% 0 - - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain UAP1 6675 genome.wustl.edu 37 1 162535967 162535967 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003115.4 +1 validated p.L37I 1.000 278 0% 348 27% 24 41.6% benign(0.427) tolerated(0.29) neutral(0.168) superfamily_Nucleotide-diphospho-sugar transferases DDR2 4921 genome.wustl.edu 37 1 162731237 162731237 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014796.1 +1 reviewed p.F364 1.000 195 0% 48 25% 2 0% - - - NULL HSD17B7 51478 genome.wustl.edu 37 1 162767618 162767618 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016371.2 +1 validated p.A120D 1.000 385 0% 255 19.6% 4 0% possibly_damaging(0.5) deleterious(0) deleterious(0.612) superfamily_NAD(P)-binding Rossmann-fold domains C1orf110 339512 genome.wustl.edu 37 1 162825017 162825017 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178550.4 -1 validated p.C149 0.006 341 0% 197 15.2% 0 - - - - NULL RGS4 5999 genome.wustl.edu 37 1 163042616 163042616 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102445.2 +1 reviewed p.K154N 1.000 232 0% 58 29.3% 2 0% probably_damaging(0.962) tolerated(0.28) neutral(0.436) superfamily_Regulat_G_prot_signal_superfam NUF2 83540 genome.wustl.edu 37 1 163297307 163297307 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031423.3 +1 reviewed p.R51S 1.000 679 0% 628 20.9% 20 40% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Nuf2 NUF2 83540 genome.wustl.edu 37 1 163298063 163298063 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031423.3 +1 reviewed p.F82V 1.000 428 0% 311 12.5% 13 30.7% probably_damaging(0.99) deleterious(0.04) deleterious(0.790) HMMPfam_Nuf2 PBX1 5087 genome.wustl.edu 37 1 164761854 164761854 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002585.2 +1 validated p.A130V 1.000 33 0% 28 25% 0 - benign(0.017) tolerated(0.17) neutral(0.059) HMMPfam_PBC LMX1A 4009 genome.wustl.edu 37 1 165173152 165173152 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177398.3 -1 validated p.L372M 1.000 176 0% 85 24.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RXRG 6258 genome.wustl.edu 37 1 165386339 165386339 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006917.3 -1 reviewed p.Q187H 1.000 191 0% 66 21.2% 0 - possibly_damaging(0.589) tolerated(0.29) neutral(0.232) HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_SSF57716 LRRC52 440699 genome.wustl.edu 37 1 165513624 165513624 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005214.3 +1 validated p.L31 0.409 286 0% 85 15.3% 0 - - - - HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058 LRRC52 440699 genome.wustl.edu 37 1 165513863 165513863 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005214.3 +1 validated p.S110 1.000 283 0% 92 19.6% 0 - - - - HMMPfam_LRR_1,superfamily_SSF52058 DUSP27 92235 genome.wustl.edu 37 1 167088508 167088508 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080426.1 +1 provisional p.R154G 0.981 240 0% 228 17.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 DUSP27 92235 genome.wustl.edu 37 1 167095134 167095134 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080426.1 +1 provisional p.R256C 1.000 142 0% 121 20.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 DUSP27 92235 genome.wustl.edu 37 1 167095469 167095469 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080426.1 +1 provisional p.Q367H 0.004 86 0% 76 11.8% 0 - possibly_damaging(0.653) deleterious(0.04) deleterious(0.579) NULL DUSP27 92235 genome.wustl.edu 37 1 167095707 167095707 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080426.1 +1 provisional p.D447N 0.906 22 0% 26 23.1% 0 - possibly_damaging(0.948) deleterious(0) deleterious(0.836) NULL POU2F1 5451 genome.wustl.edu 37 1 167370733 167370733 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002697.2 +1 provisional p.L476I 1.000 245 0% 68 33.8% 1 0% possibly_damaging(0.806) deleterious(0.03) deleterious(0.668) NULL CREG1 8804 genome.wustl.edu 37 1 167515375 167515375 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003851.2 -1 reviewed p.I208L 0.997 275 0% 197 19.8% 80 28.7% benign(0.002) tolerated(0.66) neutral(0.003) NULL MPZL1 9019 genome.wustl.edu 37 1 167741533 167741533 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003953.5 +1 validated p.Q94* 0.453 515 0% 343 23% 15 13.3% - - - HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin MPZL1 9019 genome.wustl.edu 37 1 167742529 167742529 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003953.5 +1 validated p.L177I 0.041 612 0% 436 22% 11 9% benign(0.002) tolerated(0.38) neutral(0.018) NULL ADCY10 55811 genome.wustl.edu 37 1 167815024 167815024 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018417.4 -1 reviewed p.F928L 0.846 277 0.4% 88 26.1% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ADCY10 55811 genome.wustl.edu 37 1 167825402 167825402 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018417.4 -1 reviewed e16+1 0.921 399 0% 114 21.9% 0 - - - - - ADCY10 55811 genome.wustl.edu 37 1 167825658 167825658 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018417.4 -1 reviewed p.I639N 0.040 232 0% 67 19.4% 0 - probably_damaging(0.964) deleterious(0.01) deleterious(0.812) NULL ADCY10 55811 genome.wustl.edu 37 1 167865850 167865850 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018417.4 -1 reviewed p.P241H 0.991 239 0.4% 202 21.3% 0 - probably_damaging(0.992) deleterious(0.05) deleterious(0.793) NULL DCAF6 55827 genome.wustl.edu 37 1 167973771 167973771 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018442.2 +1 validated p.G373D 1.000 198 0% 122 22.1% 43 48.8% possibly_damaging(0.915) deleterious(0.01) deleterious(0.772) superfamily_WD40_like GPR161 23432 genome.wustl.edu 37 1 168065999 168065999 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153832.1 -1 provisional p.T282 0.996 47 0% 43 27.9% 1 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like GPR161 23432 genome.wustl.edu 37 1 168066175 168066175 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153832.1 -1 provisional p.C224R 1.000 86 0% 46 23.9% 2 50% probably_damaging(0.996) tolerated(0.08) deleterious(0.762) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ANKRD36BP1 84832 genome.wustl.edu 37 1 168216095 168216095 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000358576 -1 known p.D63E 0.997 121 0% 84 14.3% 7 42.8% probably_damaging(0.995) tolerated(0.35) deleterious(0.478) NULL TBX19 9095 genome.wustl.edu 37 1 168262437 168262437 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431969 +1 known p.W107* 1.000 417 0% 252 20.2% 0 - possibly_damaging(0.874) deleterious(0.01) deleterious(0.745) HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors ATP1B1 481 genome.wustl.edu 37 1 169100767 169100767 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001677.3 +1 reviewed p.D296N 1.000 120 0% 62 25.8% 366 40.4% probably_damaging(1) tolerated(0.11) deleterious(0.772) HMMPfam_Na_K-ATPase NME7 29922 genome.wustl.edu 37 1 169267807 169267807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013330.3 -1 validated p.A212V 0.999 139 0% 51 23.5% 24 41.6% benign(0.004) tolerated(0.21) neutral(0.044) HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases NME7 29922 genome.wustl.edu 37 1 169293678 169293678 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013330.3 -1 validated p.R22* 0.997 428 0% 211 19.9% 18 22.2% - - - HMMSmart_SM00676 F5 2153 genome.wustl.edu 37 1 169509950 169509950 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.L1460I 0.205 350 0% 161 11.8% 0 - possibly_damaging(0.621) tolerated(0.32) neutral(0.240) HMMPfam_LSPR F5 2153 genome.wustl.edu 37 1 169510471 169510471 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.S1286F 0.107 1136 0% 630 21.6% 0 - possibly_damaging(0.805) deleterious(0) deleterious(0.748) HMMPfam_LSPR F5 2153 genome.wustl.edu 37 1 169519189 169519189 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.I487 0.369 701 0% 265 26% 0 - - - - superfamily_Cupredoxins F5 2153 genome.wustl.edu 37 1 169519958 169519958 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.A439V 1.000 301 0% 124 25.8% 1 0% probably_damaging(0.978) deleterious(0) deleterious(0.865) superfamily_Cupredoxins F5 2153 genome.wustl.edu 37 1 169528485 169528485 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.V212 1.000 228 0% 56 28.6% 0 - - - - superfamily_Cupredoxins F5 2153 genome.wustl.edu 37 1 169529846 169529846 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.L178M 0.966 475 0% 154 11% 0 - probably_damaging(0.999) tolerated(0.08) deleterious(0.790) superfamily_Cupredoxins F5 2153 genome.wustl.edu 37 1 169551753 169551753 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000130.4 -1 reviewed p.L56I 0.011 126 0% 68 26.5% 0 - benign(0.031) tolerated(0.18) neutral(0.058) superfamily_Cupredoxins SELP 6403 genome.wustl.edu 37 1 169564066 169564066 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003005.3 -1 reviewed p.C717* 1.000 372 0% 144 20.1% 7 0% - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SELP 6403 genome.wustl.edu 37 1 169572380 169572380 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003005.3 -1 reviewed p.S530F 0.008 283 0% 75 20% 7 0% benign(0.005) tolerated(0.82) neutral(0.001) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SELP 6403 genome.wustl.edu 37 1 169578790 169578790 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003005.3 -1 reviewed p.R429W 0.000 157 0.6% 49 20.4% 3 0% benign(0.022) deleterious(0.01) neutral(0.407) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SELP 6403 genome.wustl.edu 37 1 169580898 169580898 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003005.3 -1 reviewed p.L327M 0.101 123 0% 53 18.9% 5 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SELL 6402 genome.wustl.edu 37 1 169673845 169673845 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000655.4 -1 reviewed p.C210 0.015 206 0% 39 23.1% 8 0% - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module SELE 6401 genome.wustl.edu 37 1 169697037 169697037 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000450.2 -1 reviewed p.P437 0.000 129 0% 42 21.4% 0 - - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain C1orf112 55732 genome.wustl.edu 37 1 169812866 169812866 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018186.2 +1 predicted p.L634 0.314 587 0% 193 24.9% 11 18.1% - - - NULL SCYL3 57147 genome.wustl.edu 37 1 169838173 169838173 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181093.2 -1 validated p.A211 0.988 250 0% 114 21.9% 8 37.5% - - - HMMSmart_SM00220,superfamily_ARM repeat LOC646804 646804 genome.wustl.edu 37 1 171053211 171053211 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_929761.3 +1 model p.W193* 0.463 242 0% 176 12.5% 0 - - - - NULL FMO2 2327 genome.wustl.edu 37 1 171174561 171174561 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001460.2 +1 reviewed p.V324G 0.483 292 0% 62 19.4% 0 - possibly_damaging(0.862) tolerated(0.08) deleterious(0.633) HMMPfam_FMO-like FMO4 2329 genome.wustl.edu 37 1 171289024 171289024 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002022.1 +1 reviewed p.C20* 1.000 379 0% 94 21.3% 1 0% - - - HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain FMO4 2329 genome.wustl.edu 37 1 171303645 171303645 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002022.1 +1 reviewed p.T308I 1.000 180 0% 37 16.2% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_FMO-like MYOC 4653 genome.wustl.edu 37 1 171605656 171605656 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000261.1 -1 reviewed p.M308I 0.002 92 0% 34 23.5% 3 0% benign(0) tolerated(0.57) neutral(0.006) HMMPfam_OLF,HMMSmart_SM00284 DNM3 26052 genome.wustl.edu 37 1 172013549 172013549 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015569.3 +1 validated p.R385* 1.000 256 0.4% 42 26.2% 0 - - - - HMMPfam_Dynamin_M PIGC 5279 genome.wustl.edu 37 1 172411114 172411114 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002642.3 -1 reviewed p.Q217* 1.000 213 0% 154 14.9% 57 17.5% - - - HMMPfam_GPI2 C1orf105 92346 genome.wustl.edu 37 1 172437650 172437650 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139240.3 +1 validated p.L156 0.045 185 0% 82 26.8% 2 50% - - - NULL C1orf9 51430 genome.wustl.edu 37 1 172501718 172501718 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000367723 +1 known p.H36Y 0.000 205 0% 279 18.6% 0 - benign(0) - - NULL C1orf9 51430 genome.wustl.edu 37 1 172579295 172579295 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014283.3 +1 validated p.Q1221* 1.000 184 0% 49 28.6% 15 53.3% - - - NULL TNFSF18 8995 genome.wustl.edu 37 1 173010763 173010763 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005092.3 -1 reviewed p.G115D 0.759 363 0% 116 13.8% 1 0% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_TNF,superfamily_TNF_like PRDX6 9588 genome.wustl.edu 37 1 173454533 173454533 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004905.2 +1 reviewed p.E96* 0.996 468 0% 378 24.9% 343 0.2% - - - HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like SLC9A11 284525 genome.wustl.edu 37 1 173499102 173499102 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178527.3 -1 validated p.S752N 1.000 640 0% 255 16.1% 0 - possibly_damaging(0.947) deleterious(0.01) deleterious(0.796) NULL SLC9A11 284525 genome.wustl.edu 37 1 173526528 173526528 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178527.3 -1 validated p.A389D 1.000 318 0% 154 16.9% 0 - probably_damaging(0.997) tolerated(0.15) deleterious(0.707) HMMPfam_Na_H_Exchanger SLC9A11 284525 genome.wustl.edu 37 1 173567054 173567054 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178527.3 -1 validated p.M116L 0.101 462 0% 252 17.1% 1 100% benign(0.002) tolerated(1) - HMMPfam_Na_H_Exchanger CENPL 91687 genome.wustl.edu 37 1 173780327 173780327 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127181.2 -1 validated p.Q37H 0.118 359 0% 172 23.3% 4 25% benign(0.004) tolerated(0.41) neutral(0.015) NULL DARS2 55157 genome.wustl.edu 37 1 173797501 173797501 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018122.4 +1 reviewed p.F86 1.000 483 0% 518 22.6% 6 33.3% - - - HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB DARS2 55157 genome.wustl.edu 37 1 173823017 173823017 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018122.4 +1 reviewed p.R550C 0.825 323 0% 191 20.4% 36 50% probably_damaging(0.97) deleterious(0.01) deleterious(0.818) HMMPfam_tRNA-synt_2,superfamily_SSF55681 RC3H1 149041 genome.wustl.edu 37 1 173939754 173939754 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172071.2 -1 validated p.P408H 1.000 316 0% 221 24.4% 0 - possibly_damaging(0.76) deleterious(0.03) deleterious(0.645) superfamily_CCCH zinc finger RC3H1 149041 genome.wustl.edu 37 1 173950064 173950064 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172071.2 -1 validated p.D284 1.000 258 0% 171 18.1% 3 66.6% - - - NULL RABGAP1L 9910 genome.wustl.edu 37 1 174219703 174219703 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014857.3 +1 validated p.D270N 1.000 368 0.3% 259 21.6% 4 0% possibly_damaging(0.592) tolerated(0.67) neutral(0.207) NULL CACYBP 27101 genome.wustl.edu 37 1 174973919 174973919 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014412.2 +1 reviewed p.A62V 1.000 264 0% 222 27% 193 48.7% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Siah-Interact_N PAPPA2 60676 genome.wustl.edu 37 1 176564281 176564281 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020318.2 +1 validated p.N514S 0.939 104 0% 78 26.9% 0 - possibly_damaging(0.712) tolerated(0.35) neutral(0.278) NULL PAPPA2 60676 genome.wustl.edu 37 1 176668317 176668317 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020318.2 +1 validated p.T943M 1.000 108 0% 39 20.5% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Peptidase_M43 PAPPA2 60676 genome.wustl.edu 37 1 176811536 176811536 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020318.2 +1 validated p.D1774E 1.000 373 0% 78 21.8% 0 - possibly_damaging(0.758) tolerated(0.28) neutral(0.312) NULL ASTN1 460 genome.wustl.edu 37 1 176833450 176833450 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004319.1 -1 validated p.Y1285 1.000 208 0% 95 20% 0 - - - - NULL ASTN1 460 genome.wustl.edu 37 1 176918334 176918334 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004319.1 -1 validated p.L681I 1.000 49 0% 24 25% 0 - possibly_damaging(0.667) tolerated(0.27) neutral(0.269) NULL ASTN1 460 genome.wustl.edu 37 1 176999963 176999963 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004319.1 -1 validated p.R331W 1.000 678 0% 521 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM5B 57795 genome.wustl.edu 37 1 177226448 177226448 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021165.2 +1 provisional p.A199 1.000 80 0% 37 29.7% 0 - - - - HMMSmart_SM00457 FAM5B 57795 genome.wustl.edu 37 1 177249929 177249929 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021165.2 +1 provisional p.G539 1.000 43 0% 43 25.6% 0 - - - - NULL FAM5B 57795 genome.wustl.edu 37 1 177250007 177250007 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021165.2 +1 provisional p.H565 0.994 133 0% 87 17.2% 0 - - - - NULL FAM5B 57795 genome.wustl.edu 37 1 177250282 177250282 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021165.2 +1 provisional p.S657F 1.000 70 0% 81 18.5% 0 - possibly_damaging(0.8) tolerated(0.26) neutral(0.335) NULL SEC16B 89866 genome.wustl.edu 37 1 177898960 177898960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000239472 -1 known p.D788Y 0.001 284 0% 175 20.6% 8 50% unknown(0) - - NULL RALGPS2 55103 genome.wustl.edu 37 1 178875975 178875975 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152663.3 +1 validated p.S565 1.000 446 0% 131 16% 5 60% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ABL2 27 genome.wustl.edu 37 1 179077805 179077805 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007314.3 -1 reviewed p.S866Y 1.000 121 0% 99 30.3% 0 - probably_damaging(0.981) deleterious(0.01) deleterious(0.831) NULL SOAT1 6646 genome.wustl.edu 37 1 179312000 179312000 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003101.4 +1 provisional p.T288N 0.130 568 0% 220 19.1% 30 36.6% benign(0.004) tolerated(0.48) neutral(0.011) HMMPfam_MBOAT NPHS2 7827 genome.wustl.edu 37 1 179526248 179526248 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014625.2 -1 reviewed p.V218M 1.000 348 0% 105 26.7% 0 - benign(0.119) deleterious(0) neutral(0.454) HMMPfam_Band_7,HMMSmart_SM00244 TDRD5 163589 genome.wustl.edu 37 1 179632616 179632616 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173533.2 +1 provisional p.R826M 0.000 269 0% 164 25% 1 0% benign(0.242) deleterious(0) deleterious(0.469) NULL TOR1AIP1 26092 genome.wustl.edu 37 1 179853880 179853880 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015602.2 +1 validated p.V177I 0.131 320 0.3% 339 21.5% 12 58.3% benign(0.003) tolerated(0.67) neutral(0.003) HMMPfam_LAP1C TOR1AIP1 26092 genome.wustl.edu 37 1 179887250 179887250 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015602.2 +1 validated p.S543F 0.666 109 0% 60 15% 23 43.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_LAP1C CEP350 9857 genome.wustl.edu 37 1 179989090 179989090 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014810.4 +1 reviewed p.D727E 0.957 148 0% 137 17.5% 1 100% benign(0.052) tolerated(0.11) neutral(0.275) NULL LHX4 89884 genome.wustl.edu 37 1 180241032 180241032 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033343.2 +1 reviewed p.R223 1.000 167 0% 124 21.8% 0 - - - - NULL LHX4 89884 genome.wustl.edu 37 1 180243366 180243366 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033343.2 +1 reviewed p.G275 1.000 112 0% 93 26.9% 0 - - - - NULL ACBD6 84320 genome.wustl.edu 37 1 180366704 180366704 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032360.3 -1 validated p.H204Y 1.000 157 0% 83 21.7% 167 49.7% benign(0.146) tolerated(0.07) neutral(0.332) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK XPR1 9213 genome.wustl.edu 37 1 180775267 180775267 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004736.3 +1 validated p.A173T 1.000 231 0% 75 21.3% 9 55.5% probably_damaging(0.981) tolerated(0.06) deleterious(0.748) HMMPfam_SPX KIAA1614 57710 genome.wustl.edu 37 1 180886006 180886006 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020950.1 +1 validated p.S256I 0.002 114 0% 160 29.4% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL MR1 3140 genome.wustl.edu 37 1 181021612 181021612 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001531.1 +1 provisional p.H282Q 0.288 118 0% 108 32.4% 7 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin CACNA1E 777 genome.wustl.edu 37 1 181688936 181688936 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000721.2 +1 reviewed p.G563D 1.000 413 0% 216 13% 0 - probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1E 777 genome.wustl.edu 37 1 181690901 181690901 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000721.2 +1 reviewed p.T655M 1.000 313 0% 173 16.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1E 777 genome.wustl.edu 37 1 181702679 181702679 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000721.2 +1 reviewed p.V1019M 0.000 77 0% 79 29.1% 0 - benign(0.029) tolerated(0.19) neutral(0.051) NULL CACNA1E 777 genome.wustl.edu 37 1 181707519 181707519 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000721.2 +1 reviewed p.D1190A 1.000 586 0% 377 21% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1E 777 genome.wustl.edu 37 1 181753841 181753841 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000721.2 +1 reviewed p.T1839A 1.000 159 0% 92 9.8% 0 - benign(0.014) deleterious(0) neutral(0.445) NULL TEDDM1 127670 genome.wustl.edu 37 1 182368841 182368841 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172000.3 -1 validated p.E260D 0.013 174 0% 132 27.3% 0 - benign(0.008) tolerated(0.75) neutral(0.002) NULL RNASEL 6041 genome.wustl.edu 37 1 182553237 182553237 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021133.2 -1 reviewed p.Q515H 0.017 470 0% 163 11% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) RNASEL 6041 genome.wustl.edu 37 1 182553262 182553262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021133.2 -1 reviewed p.S507N 0.459 449 0% 156 22.4% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) NPL 80896 genome.wustl.edu 37 1 182797967 182797967 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030769.1 +1 provisional p.A296V 0.260 266 0% 246 21.1% 14 0% unknown(0) deleterious(0.03) - HMMPfam_DHDPS,superfamily_Aldolase DHX9 1660 genome.wustl.edu 37 1 182841507 182841507 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001357.4 +1 reviewed p.V531 1.000 536 0% 230 22.6% 47 46.8% - - - HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases SHCBP1L 81626 genome.wustl.edu 37 1 182921921 182921921 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030933.2 -1 validated p.G116 0.202 46 0% 48 45.8% 1 0% - - - NULL LAMC2 3918 genome.wustl.edu 37 1 183209311 183209311 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005562.2 +1 reviewed p.T1069M 0.000 527 0% 152 17.1% 79 46.8% benign(0) tolerated(0.11) neutral(0.272) NULL LAMC2 3918 genome.wustl.edu 37 1 183209455 183209455 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005562.2 +1 reviewed p.T1086I 0.025 246 0% 92 22.8% 98 43.8% benign(0.013) tolerated(0.29) neutral(0.030) NULL SMG7 9887 genome.wustl.edu 37 1 183519994 183519994 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173156.2 +1 validated p.P1031H 1.000 502 0.2% 102 20.6% 24 58.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NCF2 4688 genome.wustl.edu 37 1 183539914 183539914 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000433.3 -1 reviewed e6+1 1.000 189 0% 74 17.6% 0 - - - - - RGL1 23179 genome.wustl.edu 37 1 183885836 183885836 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015149.3 +1 validated e16+1 1.000 252 0% 73 26% 0 - - - - - FAM129A 116496 genome.wustl.edu 37 1 184765058 184765058 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052966.2 -1 validated p.L614I 0.000 59 0% 42 23.8% 3 0% benign(0.026) tolerated(0.23) neutral(0.043) NULL IVNS1ABP 10625 genome.wustl.edu 37 1 185267253 185267253 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006469.4 -1 validated p.D615N 1.000 378 0.3% 147 23.8% 289 41.5% benign(0.23) tolerated(0.36) neutral(0.043) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain HMCN1 83872 genome.wustl.edu 37 1 185953325 185953325 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed p.V939M 1.000 327 0% 91 22% 0 - probably_damaging(0.991) tolerated(0.05) deleterious(0.789) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186010192 186010192 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed p.S2076 1.000 379 0% 74 28.4% 1 100% - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186037127 186037127 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed p.R2623C 0.970 276 0% 48 25% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186043884 186043884 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed p.S2717 0.985 292 0.3% 64 18.8% 0 - - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186056647 186056647 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed p.S3078Y 0.804 193 0% 52 28.8% 0 - possibly_damaging(0.848) tolerated(0.17) neutral(0.385) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186057358 186057358 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed p.T3176N 1.000 189 0% 52 25% 0 - probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186141264 186141264 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031935.2 +1 reviewed e102+1 1.000 373 0% 102 23.5% 1 100% - - - - TPR 7175 genome.wustl.edu 37 1 186294916 186294916 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003292.2 -1 reviewed p.A2031D 1.000 217 0% 123 21.1% 131 45.8% probably_damaging(0.979) tolerated(0.47) neutral(0.433) NULL TPR 7175 genome.wustl.edu 37 1 186324542 186324542 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003292.2 -1 reviewed p.R724H 1.000 309 0% 220 25.9% 11 36.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TPR 7175 genome.wustl.edu 37 1 186342564 186342564 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003292.2 -1 reviewed p.L61 0.931 260 0% 379 14.2% 9 22.2% - - - NULL FAM5C 339479 genome.wustl.edu 37 1 190068003 190068003 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199051.1 -1 provisional p.T482 0.001 155 0% 138 20.3% 0 - - - - NULL FAM5C 339479 genome.wustl.edu 37 1 190068225 190068225 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199051.1 -1 provisional p.L408 0.988 38 0% 27 33.3% 0 - - - - NULL FAM5C 339479 genome.wustl.edu 37 1 190195306 190195306 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199051.1 -1 provisional p.C289 1.000 197 0% 52 15.4% 0 - - - - NULL RGS13 6003 genome.wustl.edu 37 1 192627410 192627410 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002927.3 +1 reviewed p.T69 0.957 294 0% 48 22.9% 0 - - - - HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam CDC73 79577 genome.wustl.edu 37 1 193104547 193104547 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024529.4 +1 reviewed p.A112T 1.000 261 0.4% 192 22.4% 16 37.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CDC73 79577 genome.wustl.edu 37 1 193172943 193172943 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024529.4 +1 reviewed p.K331E 0.997 151 0% 58 27.6% 39 48.7% possibly_damaging(0.561) tolerated(0.25) neutral(0.229) HMMPfam_CDC73 KCNT2 343450 genome.wustl.edu 37 1 196227347 196227347 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198503.2 -1 validated p.L1063S 1.000 280 0% 127 16.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL KCNT2 343450 genome.wustl.edu 37 1 196309654 196309654 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198503.2 -1 validated p.I534V 1.000 206 0% 63 22.2% 1 0% possibly_damaging(0.745) tolerated(0.08) deleterious(0.574) superfamily_NAD(P)-binding Rossmann-fold domains CFH 3075 genome.wustl.edu 37 1 196706061 196706061 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000186.3 +1 reviewed p.E841* 0.984 230 0% 82 18.3% 8 0% - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CFH 3075 genome.wustl.edu 37 1 196714984 196714984 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000186.3 +1 reviewed p.D1116 0.507 603 0% 340 20.3% 19 0% - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CFHR1 3078 genome.wustl.edu 37 1 196795984 196795984 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002113.2 +1 reviewed p.E93 0.926 370 0% 260 39.6% 0 - - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module CFHR5 81494 genome.wustl.edu 37 1 196946777 196946777 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000367414 +1 known p.R19* 0.000 367 0% 242 22.3% 0 - - - - NULL CFHR5 81494 genome.wustl.edu 37 1 196965315 196965315 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030787.3 +1 reviewed p.E318D 0.001 382 0% 142 19% 0 - probably_damaging(0.987) tolerated(0.43) neutral(0.450) HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module F13B 2165 genome.wustl.edu 37 1 197030122 197030122 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001994.2 -1 reviewed p.E179K 0.000 493 0% 160 15% 0 - benign(0.001) tolerated(0.62) neutral(0.004) HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module ASPM 259266 genome.wustl.edu 37 1 197055990 197055990 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.S3425F 0.015 461 0% 66 13.6% 20 70% possibly_damaging(0.539) deleterious(0) deleterious(0.627) NULL ASPM 259266 genome.wustl.edu 37 1 197059104 197059104 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.E3314K 1.000 126 0% 44 18.2% 17 64.7% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ASPM 259266 genome.wustl.edu 37 1 197072146 197072146 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.G2079C 0.027 125 0% 63 23.8% 2 50% benign(0.396) tolerated(0.07) neutral(0.446) HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases ASPM 259266 genome.wustl.edu 37 1 197072570 197072570 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.G1937 0.012 431 0% 87 12.6% 1 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ASPM 259266 genome.wustl.edu 37 1 197073914 197073914 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.S1489 0.027 312 0% 74 31.1% 1 0% - - - HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases ASPM 259266 genome.wustl.edu 37 1 197093433 197093433 + Nonsense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.L1066* 0.999 340 0% 145 24.1% 0 - - - - superfamily_Calponin-homology domain CH-domain ASPM 259266 genome.wustl.edu 37 1 197099071 197099071 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018136.4 -1 reviewed p.P868H 0.999 283 0% 145 23.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Calponin-homology domain CH-domain CRB1 23418 genome.wustl.edu 37 1 197390965 197390965 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201253.1 +1 reviewed p.G669 1.000 204 0% 81 24.7% 0 - - - - superfamily_Concanavalin A-like lectins/glucanases CRB1 23418 genome.wustl.edu 37 1 197403866 197403866 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201253.1 +1 reviewed p.S958I 0.262 281 0% 79 19% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin DENND1B 163486 genome.wustl.edu 37 1 197641193 197641193 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142795.1 -1 validated p.G90 1.000 269 0% 119 17.6% 0 - - - - HMMPfam_DENN,HMMSmart_SM00799 LHX9 56956 genome.wustl.edu 37 1 197886957 197886957 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020204.2 +1 reviewed p.E2K 1.000 119 0% 150 22% 0 - benign(0.144) deleterious(0) neutral(0.457) NULL LHX9 56956 genome.wustl.edu 37 1 197887043 197887043 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020204.2 +1 reviewed p.I30 1.000 92 0% 145 13.8% 0 - unknown(0) - - NULL LHX9 56956 genome.wustl.edu 37 1 197890505 197890505 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020204.2 +1 reviewed p.R150Q 1.000 70 0% 82 14.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) ATP6V1G3 127124 genome.wustl.edu 37 1 198498244 198498244 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133262.2 -1 reviewed p.Q50H 0.945 459 0% 146 19.2% 0 - probably_damaging(0.954) deleterious(0) deleterious(0.842) HMMPfam_V-ATPase_G ATP6V1G3 127124 genome.wustl.edu 37 1 198498282 198498282 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133262.2 -1 reviewed p.E38K 1.000 319 0% 103 15.5% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_V-ATPase_G ATP6V1G3 127124 genome.wustl.edu 37 1 198509757 198509757 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133262.2 -1 reviewed p.I8 1.000 499 0.2% 131 21.4% 0 - - - - HMMPfam_V-ATPase_G PTPRC 5788 genome.wustl.edu 37 1 198711416 198711416 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002838.3 +1 reviewed p.L871M 1.000 519 0% 90 22.2% 51 0% probably_damaging(1) tolerated(0.2) deleterious(0.549) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II NR5A2 2494 genome.wustl.edu 37 1 200017594 200017594 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_205860.1 +1 validated p.G253D 1.000 235 0% 196 15.3% 3 0% benign(0.002) tolerated(0.06) neutral(0.323) superfamily_Nuclear receptor ligand-binding domain ZNF281 23528 genome.wustl.edu 37 1 200376985 200376985 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012482.3 -1 provisional p.K617Q 1.000 360 0% 439 24.6% 7 28.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ZNF281 23528 genome.wustl.edu 37 1 200377290 200377290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012482.3 -1 provisional p.G515D 1.000 180 0% 182 24.2% 6 66.6% possibly_damaging(0.668) tolerated(0.31) neutral(0.264) NULL ZNF281 23528 genome.wustl.edu 37 1 200377635 200377635 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012482.3 -1 provisional p.S400I 1.000 456 0% 568 18.3% 4 50% possibly_damaging(0.745) deleterious(0.01) deleterious(0.679) NULL KIF14 9928 genome.wustl.edu 37 1 200529964 200529964 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014875.2 -1 validated p.K1372N 0.000 652 0% 348 22.1% 0 - benign(0.013) tolerated(0.49) neutral(0.011) NULL KIF14 9928 genome.wustl.edu 37 1 200558356 200558356 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014875.2 -1 validated p.A1035T 1.000 557 0% 267 19.1% 2 100% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL KIF14 9928 genome.wustl.edu 37 1 200587658 200587658 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014875.2 -1 validated p.R65I 0.998 364 0% 347 23.9% 2 50% benign(0.066) deleterious(0) neutral(0.449) NULL DDX59 83479 genome.wustl.edu 37 1 200594047 200594047 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000447706 -1 known p.K575N 0.000 420 0% 384 11.7% 0 - unknown(0) - - NULL CAMSAP2 23271 genome.wustl.edu 37 1 200818389 200818389 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203459.1 +1 validated p.S831N 0.984 261 0% 103 16.5% 5 40% benign(0) tolerated(0.56) neutral(0.006) NULL CAMSAP2 23271 genome.wustl.edu 37 1 200818865 200818865 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203459.1 +1 validated p.R990* 1.000 262 0.8% 106 23.6% 19 26.3% - - - NULL CAMSAP2 23271 genome.wustl.edu 37 1 200823946 200823946 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203459.1 +1 validated p.V1275 1.000 403 0% 230 27% 3 0% - - - NULL C1orf106 55765 genome.wustl.edu 37 1 200869348 200869348 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018265.2 +1 validated p.E184D 0.995 60 0% 61 36.1% 25 52% possibly_damaging(0.794) tolerated(0.15) deleterious(0.539) NULL KIF21B 23046 genome.wustl.edu 37 1 200943915 200943915 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017596.2 -1 provisional p.G1568S 0.997 461 0.2% 323 21.1% 3 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 KIF21B 23046 genome.wustl.edu 37 1 200978078 200978078 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017596.2 -1 provisional p.T89M 1.000 80 0% 102 19.6% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 CACNA1S 779 genome.wustl.edu 37 1 201029873 201029873 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000069.2 -1 reviewed p.Y1109* 1.000 428 0% 265 21.1% 0 - - - - superfamily_SSF81324 CACNA1S 779 genome.wustl.edu 37 1 201052333 201052333 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000069.2 -1 reviewed p.A450 1.000 105 0% 80 16.3% 0 - - - - superfamily_SSF81324 IGFN1 91156 genome.wustl.edu 37 1 201186557 201186557 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000412892 +1 known p.L664M 1.000 46 0% 42 21.4% 2 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III NAV1 89796 genome.wustl.edu 37 1 201687545 201687545 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020443.4 +1 reviewed p.S296 0.997 31 0% 32 18.8% 0 - - - - NULL NAV1 89796 genome.wustl.edu 37 1 201757670 201757670 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020443.4 +1 reviewed p.L1024M 1.000 176 0.6% 104 22.1% 3 66.6% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL NAV1 89796 genome.wustl.edu 37 1 201759817 201759817 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020443.4 +1 reviewed p.Q1082* 1.000 618 0% 365 20.8% 1 0% - - - NULL NAV1 89796 genome.wustl.edu 37 1 201762921 201762921 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020443.4 +1 reviewed p.A1108V 1.000 334 0% 210 19% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL IPO9 55705 genome.wustl.edu 37 1 201839904 201839904 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018085.4 +1 validated p.R776Q 1.000 106 0% 52 15.4% 41 29.2% benign(0.009) tolerated(0.41) neutral(0.015) superfamily_ARM repeat LMOD1 25802 genome.wustl.edu 37 1 201915238 201915238 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012134.2 -1 reviewed p.K77N 1.000 197 0% 116 22.4% 5 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_Tropomodulin TIMM17A 10440 genome.wustl.edu 37 1 201926501 201926501 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006335.2 +1 validated p.S40Y 1.000 774 0% 666 21% 72 36.1% possibly_damaging(0.947) deleterious(0) deleterious(0.835) HMMPfam_Tim17 PTPN7 5778 genome.wustl.edu 37 1 202121740 202121740 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080588.1 -1 reviewed p.R308C 1.000 106 0% 94 23.4% 19 0% probably_damaging(0.997) tolerated(0.06) deleterious(0.788) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 PTPN7 5778 genome.wustl.edu 37 1 202128442 202128442 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080588.1 -1 reviewed p.T69M 0.002 176 0% 168 25% 12 0% possibly_damaging(0.898) tolerated(0.05) deleterious(0.700) NULL PPP1R12B 4660 genome.wustl.edu 37 1 202465911 202465911 + Missense_Mutation SNP G G T rs186801986 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032105.2 +1 reviewed p.E817D 0.032 418 0% 135 14.1% 1 0% benign(0) tolerated(0.49) neutral(0.011) NULL SYT2 127833 genome.wustl.edu 37 1 202568440 202568440 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136504.1 -1 validated p.R320M 1.000 928 0% 511 20% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB SYT2 127833 genome.wustl.edu 37 1 202572241 202572241 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136504.1 -1 validated p.D117 0.758 305 0% 162 26.5% 0 - - - - NULL KDM5B 10765 genome.wustl.edu 37 1 202702817 202702817 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006618.3 -1 validated p.P1207 0.977 132 0% 123 15.4% 14 7.1% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD KDM5B 10765 genome.wustl.edu 37 1 202710837 202710837 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006618.3 -1 validated p.R868H 1.000 82 0% 168 19.6% 8 12.5% probably_damaging(0.998) tolerated(0.11) deleterious(0.746) HMMPfam_PLU-1 KDM5B 10765 genome.wustl.edu 37 1 202722177 202722177 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006618.3 -1 validated p.W519* 1.000 208 0% 133 19.5% 2 0% - - - HMMSmart_SM00558,HMMPfam_JmjC KLHL12 59349 genome.wustl.edu 37 1 202863726 202863726 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021633.2 -1 provisional p.Y429* 1.000 196 0% 158 10.8% 13 0% - - - HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central KLHL12 59349 genome.wustl.edu 37 1 202864836 202864836 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021633.2 -1 provisional p.R317C 0.997 164 0% 122 23% 16 81.2% possibly_damaging(0.793) deleterious(0.03) deleterious(0.662) HMMSmart_Kelch,superfamily_Gal_oxid_central KLHL12 59349 genome.wustl.edu 37 1 202878227 202878227 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021633.2 -1 provisional p.C248Y 1.000 179 0% 101 12.9% 10 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Gal_oxid_central CYB5R1 51706 genome.wustl.edu 37 1 202932232 202932232 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016243.2 -1 validated p.R236H 0.986 271 0% 348 23.9% 31 41.9% benign(0.121) deleterious(0) neutral(0.454) HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain CYB5R1 51706 genome.wustl.edu 37 1 202935893 202935893 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016243.2 -1 validated p.R50Q 0.999 56 0% 82 20.7% 31 32.2% benign(0.246) tolerated(0.3) neutral(0.054) HMMPfam_FAD_binding_6,superfamily_Riboflavin synthase domain-like LOC100289552 100289552 genome.wustl.edu 37 1 203098248 203098248 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342158.1 -1 model p.A198T 1.000 142 0% 153 20.9% 2 50% - - - NULL PRELP 5549 genome.wustl.edu 37 1 203452843 203452843 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002725.3 +1 reviewed p.R177 1.000 77 0% 65 13.8% 6 0% - - - HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like ZC3H11A 9877 genome.wustl.edu 37 1 203798952 203798952 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014827.4 +1 validated p.Q183* 1.000 203 0% 93 19.4% 5 80% - - - NULL GOLT1A 127845 genome.wustl.edu 37 1 204172095 204172095 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198447.1 -1 provisional p.G16S 0.995 262 0% 187 22.5% 3 33.3% probably_damaging(0.999) tolerated(0.31) deleterious(0.517) NULL PIK3C2B 5287 genome.wustl.edu 37 1 204424995 204424995 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002646.3 -1 reviewed p.I644 1.000 69 0% 33 27.3% 4 25% - - - HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) PIK3C2B 5287 genome.wustl.edu 37 1 204425121 204425121 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002646.3 -1 reviewed p.N602 0.996 131 0% 58 25.9% 4 25% - - - NULL MDM4 4194 genome.wustl.edu 37 1 204499878 204499878 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002393.3 +1 validated p.V74I 1.000 624 0% 288 17.4% 3 33.3% probably_damaging(0.974) tolerated(0.08) deleterious(0.716) HMMPfam_SWIB,superfamily_SWIB/MDM2 domain MDM4 4194 genome.wustl.edu 37 1 204507119 204507119 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000367179 +1 known p.E26D 0.013 14 0% 15 33.3% 1 0% benign(0.414) tolerated(0.13) neutral(0.387) NULL MDM4 4194 genome.wustl.edu 37 1 204518366 204518366 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002393.3 +1 validated p.T343 0.194 300 0% 131 18.3% 4 50% - - - NULL MDM4 4194 genome.wustl.edu 37 1 204518515 204518515 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002393.3 +1 validated p.E393G 1.000 286 0% 103 29.1% 1 100% benign(0) tolerated(0.24) neutral(0.037) NULL RBBP5 5929 genome.wustl.edu 37 1 205064139 205064139 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005057.2 -1 reviewed p.A484S 1.000 297 0% 89 13.5% 8 25% benign(0) tolerated(0.42) neutral(0.014) NULL TMCC2 9911 genome.wustl.edu 37 1 205238900 205238900 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014858.3 +1 validated p.R524W 1.000 103 0% 57 24.6% 1 0% possibly_damaging(0.912) deleterious(0.02) deleterious(0.746) HMMPfam_Tmemb_cc2 NUAK2 81788 genome.wustl.edu 37 1 205277848 205277848 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030952.1 -1 provisional p.S122I 1.000 48 0% 59 22% 21 38% probably_damaging(0.964) deleterious(0.01) deleterious(0.812) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase KLHDC8A 55220 genome.wustl.edu 37 1 205312635 205312635 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018203.1 -1 provisional p.V33A 1.000 25 0% 10 40% 0 - benign(0.073) deleterious(0.01) neutral(0.411) HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central MFSD4 148808 genome.wustl.edu 37 1 205555180 205555180 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181644.4 +1 validated p.V332M 0.974 79 0% 57 28.1% 0 - possibly_damaging(0.722) deleterious(0.01) deleterious(0.667) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter ELK4 2005 genome.wustl.edu 37 1 205589237 205589237 + Missense_Mutation SNP C C A rs34515238 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001973.2 -1 reviewed p.V313L 0.994 184 0% 104 32.7% 11 63.6% benign(0.003) tolerated(0.45) neutral(0.012) NULL NUCKS1 64710 genome.wustl.edu 37 1 205687486 205687486 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022731.3 -1 validated p.K218 1.000 182 0% 169 19.5% 77 48% - - - NULL SLC26A9 115019 genome.wustl.edu 37 1 205890892 205890892 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134325.2 -1 reviewed p.G619 0.028 339 0% 232 16.8% 1 0% - - - HMMPfam_STAS,superfamily_STAS SLC26A9 115019 genome.wustl.edu 37 1 205890949 205890949 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134325.2 -1 reviewed p.Q600H 1.000 248 0% 161 22.4% 0 - possibly_damaging(0.716) tolerated(0.14) deleterious(0.508) HMMPfam_STAS,superfamily_STAS AVPR1B 553 genome.wustl.edu 37 1 206224708 206224708 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000707.3 +1 reviewed p.P90S 1.000 48 0% 34 32.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like AVPR1B 553 genome.wustl.edu 37 1 206225299 206225299 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000707.3 +1 reviewed p.V287M 1.000 108 0% 137 10.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CTSE 1510 genome.wustl.edu 37 1 206331042 206331042 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001910.2 +1 reviewed p.F350V 0.303 211 0% 115 14.8% 50 50% benign(0) tolerated(0.35) neutral(0.021) HMMPfam_Asp,superfamily_Pept_Aspartic CTSE 1510 genome.wustl.edu 37 1 206331102 206331102 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001910.2 +1 reviewed p.L370M 1.000 237 0% 137 12.4% 34 47% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Asp,superfamily_Pept_Aspartic LGTN 100529141 genome.wustl.edu 37 1 206769141 206769141 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006893.2 -1 reviewed p.Q479* 1.000 398 0.3% 278 20.1% 32 3.1% - - - superfamily_eIF1-like DYRK3 8444 genome.wustl.edu 37 1 206821352 206821352 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003582.2 +1 reviewed p.N270S 1.000 179 0% 130 20% 5 60% probably_damaging(1) tolerated(0.29) deleterious(0.529) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase FAIM3 9214 genome.wustl.edu 37 1 207087191 207087191 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142472.1 -1 validated p.E96* 0.000 274 0.7% 261 21.8% 18 0% - - - HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin PIGR 5284 genome.wustl.edu 37 1 207108075 207108075 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002644.3 -1 reviewed p.K465N 0.002 165 0% 84 25% 11 45.4% possibly_damaging(0.945) tolerated(0.37) neutral(0.409) HMMPfam_V-set,superfamily_SSF48726 FCAMR 83953 genome.wustl.edu 37 1 207134274 207134274 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000324852 -1 known p.S316N 0.000 333 0% 129 29.5% 0 - possibly_damaging(0.707) tolerated(0.05) deleterious(0.601) NULL FCAMR 83953 genome.wustl.edu 37 1 207134440 207134440 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000324852 -1 known p.A261S 0.029 284 0% 105 14.3% 0 - benign(0.138) tolerated(0.32) neutral(0.036) NULL PFKFB2 5208 genome.wustl.edu 37 1 207245617 207245617 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006212.2 +1 reviewed p.S473 1.000 192 0% 62 25.8% 3 33.3% - - - NULL C4BPB 725 genome.wustl.edu 37 1 207263787 207263787 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000716.3 +1 reviewed p.A65T 0.000 268 0.4% 112 22.3% 0 - benign(0.195) tolerated(0.05) neutral(0.364) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CD55 1604 genome.wustl.edu 37 1 207498006 207498006 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114752.1 +1 reviewed p.R130H 0.900 179 0% 308 23.4% 125 49.6% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module CD55 1604 genome.wustl.edu 37 1 207510151 207510151 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114752.1 +1 reviewed p.P323S 0.002 1041 0.1% 644 11.6% 254 26.3% benign(0.005) deleterious(0.04) neutral(0.349) NULL CR2 1380 genome.wustl.edu 37 1 207643189 207643189 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006658.2 +1 reviewed p.L323F 0.030 319 0% 103 19.4% 0 - possibly_damaging(0.822) deleterious(0.01) deleterious(0.717) HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module CR1 1378 genome.wustl.edu 37 1 207741276 207741276 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000651.4 +1 reviewed p.P1354S 0.009 562 0% 162 16% 0 - probably_damaging(0.994) tolerated(0.2) deleterious(0.501) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain PLXNA2 5362 genome.wustl.edu 37 1 208212267 208212267 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025179.3 -1 reviewed p.N1521 1.000 359 0% 273 20.9% 5 20% - - - superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl PLXNA2 5362 genome.wustl.edu 37 1 208227844 208227844 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025179.3 -1 reviewed p.T926 0.988 82 0% 46 26.1% 2 0% - - - HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains LAMB3 3914 genome.wustl.edu 37 1 209788725 209788725 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000228.2 -1 reviewed p.S1137I 0.998 85 0% 50 24% 152 52.6% probably_damaging(0.962) deleterious(0) deleterious(0.850) NULL LAMB3 3914 genome.wustl.edu 37 1 209796011 209796011 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000228.2 -1 reviewed p.E857 0.965 76 0% 80 30% 64 37.5% - - - NULL LAMB3 3914 genome.wustl.edu 37 1 209797249 209797249 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451182 -1 known p.V565A 0.001 161 0% 158 24.1% 46 45.6% - - - NULL LAMB3 3914 genome.wustl.edu 37 1 209811973 209811973 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000228.2 -1 reviewed p.K68 1.000 111 0% 63 33.3% 29 31% - - - HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like HSD11B1 3290 genome.wustl.edu 37 1 209905850 209905850 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005525.2 +1 reviewed p.S196Y 0.016 432 0% 181 16% 5 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains IRF6 3664 genome.wustl.edu 37 1 209964021 209964021 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006147.2 -1 reviewed p.K293N 0.965 117 0% 79 19% 18 50% benign(0.009) deleterious(0.01) neutral(0.406) superfamily_SMAD_FHA,HMMPfam_IRF-3 DIEXF 27042 genome.wustl.edu 37 1 210004293 210004293 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014388.5 +1 validated p.S98I 0.000 296 0.3% 102 22.5% 9 33.3% benign(0.004) tolerated(0.17) neutral(0.059) NULL DIEXF 27042 genome.wustl.edu 37 1 210006696 210006696 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014388.5 +1 validated p.A185 0.000 274 0% 108 21.3% 10 10% - - - NULL DIEXF 27042 genome.wustl.edu 37 1 210008500 210008500 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014388.5 +1 validated p.E215K 0.005 316 0.3% 123 15.4% 13 30.7% benign(0.011) tolerated(0.68) neutral(0.003) NULL DIEXF 27042 genome.wustl.edu 37 1 210012460 210012460 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000457820 +1 known p.T104I 1.000 359 0% 135 13.3% 18 11.1% - - - HMMPfam_DUF1253 DIEXF 27042 genome.wustl.edu 37 1 210015637 210015637 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014388.5 +1 validated p.P505S 1.000 305 0% 97 22.7% 20 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1253 SERTAD4 56256 genome.wustl.edu 37 1 210411310 210411310 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019605.3 +1 validated p.T2N 1.000 69 0% 98 22.4% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL RCOR3 55758 genome.wustl.edu 37 1 211451540 211451540 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136223.1 +1 validated p.R200C 1.000 326 0% 182 23.6% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DTL 51514 genome.wustl.edu 37 1 212251570 212251570 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016448.2 +1 validated p.T364M 1.000 385 0% 193 25.9% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 DTL 51514 genome.wustl.edu 37 1 212254014 212254014 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016448.2 +1 validated p.E395* 0.968 419 0% 187 11.8% 12 0% - - - superfamily_WD40 repeat-like LOC100287008 100287008 genome.wustl.edu 37 1 212619249 212619249 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342183.1 -1 model p.D26N 0.558 244 0% 185 27.6% 334 37.4% - - - NULL FAM71A 149647 genome.wustl.edu 37 1 212798269 212798269 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153606.3 +1 validated p.S17N 0.000 171 0% 98 23.5% 0 - benign(0.098) deleterious(0.05) neutral(0.353) NULL FAM71A 149647 genome.wustl.edu 37 1 212799380 212799380 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153606.3 +1 validated p.M387I 0.000 109 0% 67 17.9% 0 - benign(0.002) tolerated(0.41) neutral(0.015) NULL VASH2 79805 genome.wustl.edu 37 1 213147326 213147326 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024749.3 +1 validated p.P259 0.096 140 0% 85 14.1% 1 0% - - - NULL RPS6KC1 26750 genome.wustl.edu 37 1 213244380 213244380 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012424.3 +1 validated p.Q46H 1.000 244 0% 192 25% 1 100% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain PROX1 5629 genome.wustl.edu 37 1 214170027 214170027 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002763.3 +1 provisional p.S50Y 1.000 345 0% 263 23.2% 0 - possibly_damaging(0.911) deleterious(0.02) deleterious(0.746) HMMPfam_Prox1 CENPF 1063 genome.wustl.edu 37 1 214792512 214792512 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016343.3 +1 reviewed p.E174 1.000 159 0% 91 22% 1 0% - - - HMMPfam_Cenp-F_N KCTD3 51133 genome.wustl.edu 37 1 215793560 215793560 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016121.3 +1 validated p.A683V 0.538 265 0% 128 30.5% 12 50% benign(0.006) deleterious(0) neutral(0.445) NULL USH2A 7399 genome.wustl.edu 37 1 215807888 215807888 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.E5070 0.826 353 0% 217 17.1% 0 - - - - NULL USH2A 7399 genome.wustl.edu 37 1 215847926 215847926 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.L4443M 1.000 255 0% 43 16.3% 0 - benign(0.115) tolerated(0.12) neutral(0.270) superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 216019262 216019262 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.L2987I 1.000 295 0.3% 115 15.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 216019296 216019296 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.I2975 0.058 292 0% 115 17.4% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 216172296 216172296 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.T2197I 0.998 461 0% 117 22.2% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMSmart_SM00060,superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 216256857 216256857 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.D1747N 1.000 295 0% 95 10.5% 0 - possibly_damaging(0.706) tolerated(0.14) deleterious(0.504) HMMSmart_SM00282,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 USH2A 7399 genome.wustl.edu 37 1 216348728 216348728 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.P1498L 0.996 470 0% 97 21.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases USH2A 7399 genome.wustl.edu 37 1 216424308 216424308 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206933.2 -1 reviewed p.V702L 0.992 392 0% 75 21.3% 0 - possibly_damaging(0.94) tolerated(0.24) neutral(0.422) HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin LYPLAL1 127018 genome.wustl.edu 37 1 219347294 219347294 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138794.3 +1 validated p.S21I 1.000 74 0% 69 21.7% 20 40% possibly_damaging(0.789) deleterious(0.01) deleterious(0.702) HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases EPRS 2058 genome.wustl.edu 37 1 220160638 220160638 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004446.2 -1 reviewed p.D962Y 1.000 355 0.3% 138 25.4% 39 38.4% possibly_damaging(0.776) deleterious(0.03) deleterious(0.654) NULL BPNT1 10380 genome.wustl.edu 37 1 220236283 220236283 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006085.4 -1 validated p.A163V 1.000 132 0% 57 26.3% 32 43.7% benign(0.002) tolerated(0.09) neutral(0.296) HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase RAB3GAP2 25782 genome.wustl.edu 37 1 220356240 220356240 + Nonsense_Mutation SNP C C A rs116733626 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012414.3 -1 reviewed p.E678* 0.999 325 0% 167 21% 1 0% - - - NULL MARK1 4139 genome.wustl.edu 37 1 220805634 220805634 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018650.3 +1 validated p.L367 0.997 171 0% 66 10.6% 1 0% - - - HMMPfam_UBA,HMMSmart_SM00165 HLX 3142 genome.wustl.edu 37 1 221053711 221053711 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021958.3 +1 validated p.S171N 1.000 40 0% 13 38.5% 2 0% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL HHIPL2 79802 genome.wustl.edu 37 1 222717353 222717353 + Missense_Mutation SNP C C T rs182677675 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024746.3 -1 validated p.R167H 0.063 105 0% 56 21.4% 1 0% benign(0.002) tolerated(0.5) neutral(0.010) NULL MIA3 375056 genome.wustl.edu 37 1 222803373 222803373 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198551.2 +1 validated p.Q937H 0.007 201 0% 117 23.9% 12 33.3% benign(0.013) tolerated(0.28) neutral(0.032) NULL MIA3 375056 genome.wustl.edu 37 1 222828136 222828136 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198551.2 +1 validated e18+1 1.000 201 0% 100 24% 17 100% - - - - DISP1 84976 genome.wustl.edu 37 1 223177480 223177480 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032890.2 +1 reviewed p.F914C 1.000 169 0% 97 14.4% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Patched DISP1 84976 genome.wustl.edu 37 1 223178105 223178105 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032890.2 +1 reviewed p.F1122 0.907 135 1.5% 88 19.3% 12 33.3% - - - superfamily_SSF82866 CAPN8 388743 genome.wustl.edu 37 1 223853219 223853219 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143962.1 -1 validated p.V44I 0.770 146 0% 61 24.6% 0 - benign(0) tolerated(0.32) neutral(0.024) HMMSmart_SM00230,superfamily_Cysteine proteinases TP53BP2 7159 genome.wustl.edu 37 1 223983834 223983834 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031685.2 -1 reviewed p.E803K 0.848 404 0.2% 148 20.3% 19 36.8% possibly_damaging(0.902) tolerated(0.14) deleterious(0.607) NULL FBXO28 23219 genome.wustl.edu 37 1 224321810 224321810 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015176.2 +1 validated p.R138C 1.000 236 0% 120 10.8% 10 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL NVL 4931 genome.wustl.edu 37 1 224505454 224505454 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002533.2 -1 validated p.T76A 0.004 780 0.1% 407 19.2% 9 44.4% benign(0.007) tolerated(0.74) neutral(0.002) NULL WDR26 80232 genome.wustl.edu 37 1 224588661 224588661 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025160.6 -1 reviewed p.F323 1.000 145 0% 60 15% 60 40% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like DNAH14 127602 genome.wustl.edu 37 1 225156512 225156512 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001373.1 +1 validated p.E235K 0.275 342 0% 142 16.9% 7 42.8% possibly_damaging(0.692) tolerated(0.85) neutral(0.248) NULL DNAH14 127602 genome.wustl.edu 37 1 225521016 225521016 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000448170 +1 known p.S397P 0.000 193 0% 127 22% 0 - - - - NULL DNAH14 127602 genome.wustl.edu 37 1 225562394 225562394 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001373.1 +1 validated p.A4015V 0.312 154 0% 211 22.7% 0 - benign(0.14) deleterious(0.01) neutral(0.418) HMMPfam_Dynein_heavy DNAH14 127602 genome.wustl.edu 37 1 225567883 225567883 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001373.1 +1 validated p.L4145 0.357 307 0% 283 23% 0 - - - - HMMPfam_Dynein_heavy ENAH 55740 genome.wustl.edu 37 1 225755019 225755019 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008493.1 -1 validated p.V35F 1.000 445 0% 190 24.2% 7 28.5% unknown(0) deleterious(0) - HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like EPHX1 2052 genome.wustl.edu 37 1 226032856 226032856 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000120.3 +1 reviewed p.V392 0.004 129 0% 125 20.8% 251 41.8% - - - HMMPfam_Abhydrolase_1,superfamily_SSF53474 EPHX1 2052 genome.wustl.edu 37 1 226032943 226032943 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000120.3 +1 reviewed p.I421 0.388 104 0% 104 22.1% 179 33.5% - - - superfamily_SSF53474 TMEM63A 9725 genome.wustl.edu 37 1 226036614 226036614 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014698.2 -1 validated p.S724I 1.000 184 0% 115 19.1% 34 41.1% possibly_damaging(0.859) deleterious(0.01) deleterious(0.738) NULL TMEM63A 9725 genome.wustl.edu 37 1 226040394 226040394 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014698.2 -1 validated p.S625I 1.000 127 0% 97 27.8% 51 39.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF221 TMEM63A 9725 genome.wustl.edu 37 1 226050266 226050266 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014698.2 -1 validated p.E280 1.000 333 0% 235 24.3% 17 35.2% - - - superfamily_SSF54928 LEFTY1 10637 genome.wustl.edu 37 1 226076616 226076616 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020997.2 -1 reviewed p.L51 0.077 19 0% 29 27.6% 1 100% - - - HMMPfam_TGFb_propeptide LEFTY2 7044 genome.wustl.edu 37 1 226128638 226128638 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003240.3 -1 reviewed p.S68N 0.999 36 0% 52 21.2% 1 0% possibly_damaging(0.455) tolerated(1) neutral(0.149) HMMPfam_TGFb_propeptide C1orf55 163859 genome.wustl.edu 37 1 226173193 226173193 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152608.3 -1 validated p.A389V 1.000 164 0% 140 22.9% 9 33.3% possibly_damaging(0.943) deleterious(0.03) deleterious(0.752) NULL C1orf55 163859 genome.wustl.edu 37 1 226180124 226180124 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152608.3 -1 validated p.E165 1.000 111 0% 86 25.6% 8 50% - - - NULL C1orf55 163859 genome.wustl.edu 37 1 226180157 226180157 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152608.3 -1 validated p.P154 0.007 98 0% 101 24.8% 19 36.8% - - - NULL H3F3A 3020 genome.wustl.edu 37 1 226259144 226259144 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002107.3 +1 reviewed p.I125 1.000 189 0% 167 23.4% 1294 36.7% - - - HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold ACBD3 64746 genome.wustl.edu 37 1 226353609 226353609 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022735.3 -1 reviewed p.D127Y 1.000 411 0% 219 13.2% 8 25% unknown(0) deleterious(0.01) - HMMPfam_ACBP,superfamily_Acyl-CoA binding protein LIN9 286826 genome.wustl.edu 37 1 226420276 226420276 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173083.2 -1 provisional p.A535T 1.000 345 0% 300 19% 11 54.5% probably_damaging(0.955) tolerated(0.51) neutral(0.408) NULL ITPKB 3707 genome.wustl.edu 37 1 226923525 226923525 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002221.3 -1 reviewed p.P545 0.000 60 0% 60 15% 15 13.3% - - - NULL PSEN2 5664 genome.wustl.edu 37 1 227073357 227073357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000447.2 +1 reviewed p.L159I 1.000 110 0% 102 23.5% 21 28.5% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Presenilin,HMMSmart_SM00730 PSEN2 5664 genome.wustl.edu 37 1 227079056 227079056 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000447.2 +1 reviewed p.E322K 0.991 19 0% 32 18.8% 35 51.4% benign(0.146) tolerated(0.3) neutral(0.041) HMMPfam_Presenilin,HMMSmart_SM00730 ADCK3 56997 genome.wustl.edu 37 1 227174166 227174166 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020247.4 +1 reviewed p.A558T 1.000 138 0% 140 19.3% 44 43.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SNAP47 116841 genome.wustl.edu 37 1 227935545 227935545 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426344 +1 known p.H73Y 0.782 71 0% 55 30.9% 35 37.1% - - - NULL WNT3A 89780 genome.wustl.edu 37 1 228210491 228210491 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033131.2 +1 reviewed p.S65 0.998 40 0% 65 32.3% 0 - - - - HMMPfam_wnt,HMMSmart_WNT1 MRPL55 128308 genome.wustl.edu 37 1 228295393 228295393 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181462.2 -1 reviewed p.Y104 0.976 33 0% 58 22.4% 200 38% - - - HMMPfam_Mitoc_L55 GUK1 2987 genome.wustl.edu 37 1 228336153 228336153 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000858.5 +1 validated p.S186Y 0.001 52 0% 69 21.7% 588 36.9% possibly_damaging(0.523) tolerated(1) neutral(0.176) HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases OBSCN 84033 genome.wustl.edu 37 1 228402113 228402113 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098623.1 +1 reviewed p.T499 0.001 17 0% 17 23.5% 0 - - - - HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228434423 228434423 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098623.1 +1 reviewed p.Q1318* 1.000 101 0% 76 15.8% 1 0% - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228466988 228466988 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098623.1 +1 reviewed p.L2413 0.149 52 0% 44 22.7% 0 - - - - superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228468350 228468350 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098623.1 +1 reviewed p.V2684M 0.000 34 0% 54 25.9% 0 - possibly_damaging(0.448) tolerated(0.12) neutral(0.407) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228491383 228491383 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000366707 +1 known p.P1272 0.004 129 0% 91 11% 0 - - - - HMMSmart_SM00406,superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228522595 228522595 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441106 +1 known p.L5I 0.936 49 0% 53 35.8% 2 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin OBSCN 84033 genome.wustl.edu 37 1 228528901 228528901 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098623.1 +1 reviewed p.R5935W 0.740 39 0% 42 23.8% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like HIST3H2A 92815 genome.wustl.edu 37 1 228645288 228645288 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033445.2 -1 reviewed p.T77 0.965 110 0% 107 37.4% 23 0% - - - HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold LOC100288545 100288545 genome.wustl.edu 37 1 229568451 229568451 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342173.1 +1 model p.L109F 1.000 122 0% 150 28% 0 - - - - NULL URB2 9816 genome.wustl.edu 37 1 229771368 229771368 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014777.2 +1 provisional p.K336N 0.021 79 0% 46 10.9% 6 16.6% benign(0.072) tolerated(0.48) neutral(0.015) NULL URB2 9816 genome.wustl.edu 37 1 229771446 229771446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014777.2 +1 provisional p.Q362H 1.000 82 0% 57 15.8% 2 0% possibly_damaging(0.922) tolerated(0.08) deleterious(0.671) NULL URB2 9816 genome.wustl.edu 37 1 229773826 229773826 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014777.2 +1 provisional p.G1156S 0.000 347 0% 290 21.4% 6 33.3% benign(0) tolerated(1) - NULL URB2 9816 genome.wustl.edu 37 1 229783376 229783376 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014777.2 +1 provisional p.H1342 0.784 54 0% 47 19.1% 16 37.5% - - - HMMPfam_Urb2 URB2 9816 genome.wustl.edu 37 1 229794962 229794962 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014777.2 +1 provisional p.R1498I 0.527 156 0% 71 23.9% 24 41.6% probably_damaging(0.962) deleterious(0) deleterious(0.850) HMMPfam_Urb2 CAPN9 10753 genome.wustl.edu 37 1 230910305 230910305 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006615.2 +1 reviewed p.P294L 0.004 454 0.4% 182 23.1% 0 - benign(0) deleterious(0.05) neutral(0.345) HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases TRIM67 440730 genome.wustl.edu 37 1 231337170 231337170 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004342.3 +1 validated p.P481S 1.000 180 0% 110 30% 0 - probably_damaging(0.999) tolerated(0.09) deleterious(0.787) NULL TRIM67 440730 genome.wustl.edu 37 1 231342475 231342475 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004342.3 +1 validated p.K586N 0.994 243 0% 165 10.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III C1orf131 128061 genome.wustl.edu 37 1 231374623 231374623 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152379.2 -1 validated p.D144Y 0.001 233 0% 257 20.2% 19 47.3% probably_damaging(0.965) deleterious(0.02) deleterious(0.790) NULL EXOC8 149371 genome.wustl.edu 37 1 231473264 231473264 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175876.3 -1 validated p.E76D 1.000 24 0% 28 21.4% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Vps51 TSNAX 7257 genome.wustl.edu 37 1 231700395 231700395 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005999.2 +1 reviewed p.V206A 1.000 562 0% 319 21% 29 37.9% possibly_damaging(0.848) tolerated(0.05) deleterious(0.671) HMMPfam_Translin,superfamily_Translin DISC1 27185 genome.wustl.edu 37 1 231829773 231829773 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018662.2 +1 reviewed p.S90L 0.000 57 0% 46 15.2% 3 0% benign(0.002) tolerated(0.37) neutral(0.019) NULL DISC1 27185 genome.wustl.edu 37 1 231829852 231829852 + Silent SNP G G A rs189101828 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018662.2 +1 reviewed p.A116 0.000 62 3.2% 57 24.6% 0 - - - - NULL DISC1 27185 genome.wustl.edu 37 1 231830233 231830233 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018662.2 +1 reviewed p.Q243 0.001 50 0% 38 23.7% 2 50% - - - NULL SIPA1L2 57568 genome.wustl.edu 37 1 232561501 232561501 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020808.3 -1 validated p.S1488 0.075 185 0% 141 24.8% 6 33.3% - - - NULL PCNXL2 80003 genome.wustl.edu 37 1 233190117 233190117 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429988 -1 known p.R217* 0.766 174 0% 59 30.5% 2 50% - - - NULL KIAA1804 84451 genome.wustl.edu 37 1 233497897 233497897 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032435.2 +1 validated p.R470 0.001 102 0% 38 31.6% 8 50% - - - NULL C1orf31 388753 genome.wustl.edu 37 1 234519528 234519528 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012985.1 +1 predicted p.G114 0.711 190 0% 147 23.8% 142 40.8% - - - NULL TARBP1 6894 genome.wustl.edu 37 1 234527422 234527422 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005646.3 -1 reviewed p.Q1589H 0.990 132 0% 81 27.2% 34 50% benign(0.046) tolerated(0.54) neutral(0.010) HMMPfam_SpoU_methylase,superfamily_SSF75217 TARBP1 6894 genome.wustl.edu 37 1 234553954 234553954 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005646.3 -1 reviewed p.R1194M 1.000 50 0% 88 21.6% 5 40% benign(0.048) deleterious(0.02) neutral(0.386) superfamily_ARM-type_fold RBM34 23029 genome.wustl.edu 37 1 235295129 235295129 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015014.2 -1 validated p.P393S 0.663 385 0% 468 22% 107 47.6% benign(0) tolerated(0.8) neutral(0.001) NULL ARID4B 51742 genome.wustl.edu 37 1 235345569 235345569 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016374.5 -1 reviewed p.L889I 1.000 183 0% 149 20.8% 7 14.2% probably_damaging(0.982) tolerated(0.26) neutral(0.461) NULL LYST 1130 genome.wustl.edu 37 1 235918881 235918881 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000081.2 -1 reviewed p.F2376L 1.000 242 0% 66 18.2% 0 - probably_damaging(0.999) - - NULL LYST 1130 genome.wustl.edu 37 1 235993653 235993653 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000081.2 -1 reviewed p.A22V 1.000 145 0% 69 20.3% 14 7.1% probably_damaging(1) - - NULL NID1 4811 genome.wustl.edu 37 1 236143210 236143210 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002508.2 -1 reviewed p.P1141S 0.928 112 0% 66 16.7% 13 0% benign(0) tolerated(0.93) - HMMSmart_SM00135,superfamily_YWTD domain NID1 4811 genome.wustl.edu 37 1 236187506 236187506 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002508.2 -1 reviewed p.S664 0.999 56 0% 49 32.7% 9 11.1% - - - HMMSmart_SM00682 GPR137B 7107 genome.wustl.edu 37 1 236343287 236343287 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003272.3 +1 validated p.V266I 0.994 358 0% 138 21% 40 25% benign(0.002) tolerated(0.62) neutral(0.004) NULL LGALS8 3964 genome.wustl.edu 37 1 236702250 236702250 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006499.3 +1 reviewed p.R69H 0.997 276 0% 201 23.4% 28 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl HEATR1 55127 genome.wustl.edu 37 1 236720519 236720519 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018072.4 -1 validated p.P1777 0.992 78 0% 35 25.7% 15 13.3% - - - superfamily_ARM-type_fold HEATR1 55127 genome.wustl.edu 37 1 236723039 236723039 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018072.4 -1 validated p.S1582N 1.000 134 0.7% 62 17.7% 9 44.4% benign(0.004) tolerated(0.58) neutral(0.005) superfamily_ARM-type_fold HEATR1 55127 genome.wustl.edu 37 1 236730015 236730015 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018072.4 -1 validated p.W1413* 1.000 140 0% 59 23.7% 7 0% - - - superfamily_ARM-type_fold HEATR1 55127 genome.wustl.edu 37 1 236734734 236734734 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018072.4 -1 validated p.V1289I 1.000 234 0% 123 26.8% 4 50% possibly_damaging(0.868) deleterious(0.01) deleterious(0.743) superfamily_ARM-type_fold ACTN2 88 genome.wustl.edu 37 1 236894587 236894587 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103.2 +1 reviewed p.D224Y 1.000 425 0% 237 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain MTR 4548 genome.wustl.edu 37 1 236976058 236976058 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000254.2 +1 reviewed p.A175T 1.000 595 0.2% 231 21.6% 3 66.6% unknown(0) tolerated(0.07) - HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase RYR2 6262 genome.wustl.edu 37 1 237604770 237604770 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.S386Y 0.138 289 0.3% 86 20.9% 0 - possibly_damaging(0.928) - - HMMPfam_MIR,superfamily_MIR domain (Pfam 02815) RYR2 6262 genome.wustl.edu 37 1 237659916 237659916 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.E689D 0.999 232 0% 110 13.6% 0 - possibly_damaging(0.666) - - HMMPfam_SPRY,HMMSmart_SM00449 RYR2 6262 genome.wustl.edu 37 1 237666766 237666766 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.T858 0.832 131 0% 56 12.5% 0 - - - - NULL RYR2 6262 genome.wustl.edu 37 1 237777476 237777476 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.P1683H 0.875 142 0% 61 16.4% 0 - benign(0) - - NULL RYR2 6262 genome.wustl.edu 37 1 237778076 237778076 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.A1883V 0.342 79 0% 44 20.5% 0 - benign(0) - - NULL RYR2 6262 genome.wustl.edu 37 1 237787145 237787145 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.F1999 1.000 503 0% 198 22.7% 0 - - - - NULL RYR2 6262 genome.wustl.edu 37 1 237801768 237801768 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.L2302I 1.000 593 0% 357 26.3% 1 0% probably_damaging(0.999) - - HMMPfam_RYDR_ITPR RYR2 6262 genome.wustl.edu 37 1 237813226 237813226 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035.2 +1 reviewed p.C2521Y 1.000 261 0% 182 25.8% 0 - probably_damaging(0.994) - - NULL CHRM3 1131 genome.wustl.edu 37 1 240070949 240070949 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000740.2 +1 reviewed p.W66* 1.000 231 0.4% 91 22% 0 - - - - superfamily_SSF81321 FMN2 56776 genome.wustl.edu 37 1 240370405 240370405 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020066.4 +1 validated p.G765W 0.000 60 0% 48 27.1% 0 - unknown(0) deleterious(0.02) - NULL FMN2 56776 genome.wustl.edu 37 1 240601433 240601433 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020066.4 +1 validated p.F1661L 1.000 330 0% 150 21.3% 0 - possibly_damaging(0.897) tolerated(0.08) deleterious(0.654) HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd RGS7 6000 genome.wustl.edu 37 1 240977029 240977029 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002924.4 -1 validated e12-1 1.000 230 0% 188 17.6% 0 - - - - - KMO 8564 genome.wustl.edu 37 1 241724002 241724002 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003679.3 +1 validated p.N133K 1.000 383 0% 178 23% 3 0% benign(0.004) tolerated(0.45) neutral(0.012) superfamily_FAD/NAD(P)-binding domain EXO1 9156 genome.wustl.edu 37 1 242021976 242021976 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006027.4 +1 reviewed p.A238S 1.000 262 0% 258 18.2% 4 25% probably_damaging(0.989) deleterious(0.03) deleterious(0.804) HMMSmart_SM00279,superfamily_5' to 3' exonuclease C-terminal subdomain EXO1 9156 genome.wustl.edu 37 1 242042191 242042191 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006027.4 +1 reviewed p.D552G 0.000 346 0% 141 18.4% 9 22.2% benign(0) tolerated(0.47) neutral(0.011) NULL PLD5 200150 genome.wustl.edu 37 1 242287936 242287936 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152666.1 -1 provisional p.C164Y 1.000 382 0% 155 22.6% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_PLD_envelope,superfamily_SSF56024 PLD5 200150 genome.wustl.edu 37 1 242451672 242451672 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152666.1 -1 provisional p.A71S 1.000 398 0% 199 11.6% 0 - benign(0.091) tolerated(0.35) neutral(0.027) superfamily_SSF56024 CEP170 9859 genome.wustl.edu 37 1 243327729 243327729 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336415 -1 known p.R1142* 0.995 226 0.9% 111 12.6% 2 0% benign(0) tolerated(0.12) neutral(0.261) NULL CEP170 9859 genome.wustl.edu 37 1 243332946 243332946 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336415 -1 known p.L573P 0.934 256 0% 210 20.5% 2 0% - - - NULL CEP170 9859 genome.wustl.edu 37 1 243362493 243362493 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014812.2 -1 reviewed p.I167T 0.962 368 0% 178 10.7% 1 0% benign(0) tolerated(0.37) neutral(0.019) NULL CEP170 9859 genome.wustl.edu 37 1 243364137 243364137 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000272037 -1 known e4-2 1.000 211 0% 129 24.8% 1 100% probably_damaging(0.979) deleterious(0) deleterious(0.867) - SDCCAG8 10806 genome.wustl.edu 37 1 243449666 243449666 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006642.2 +1 validated p.E171D 0.860 249 0% 132 15.9% 10 40% benign(0.134) tolerated(0.5) neutral(0.021) NULL AKT3 10000 genome.wustl.edu 37 1 243708871 243708871 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005465.3 -1 reviewed p.E398* 1.000 394 0% 193 19.7% 1 0% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase C1orf100 200159 genome.wustl.edu 37 1 244552334 244552334 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012970.1 +1 predicted p.R136I 0.001 312 0.3% 156 18.6% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL ADSS 159 genome.wustl.edu 37 1 244574725 244574725 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126.2 -1 reviewed p.V394 1.000 322 0% 147 21.8% 88 39.7% - - - HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases C1orf101 257044 genome.wustl.edu 37 1 244735844 244735844 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130957.1 +1 validated p.S574R 0.805 361 0% 160 15% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL C1orf101 257044 genome.wustl.edu 37 1 244803348 244803348 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130957.1 +1 validated p.L941I 0.058 617 0% 493 11.2% 2 0% possibly_damaging(0.875) deleterious(0) deleterious(0.784) NULL HNRNPU 3192 genome.wustl.edu 37 1 245020049 245020049 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031844.2 -1 reviewed p.R575Q 1.000 161 0% 195 27.7% 399 43.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases KIF26B 55083 genome.wustl.edu 37 1 245765916 245765916 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018012.3 +1 provisional p.R463Q 0.660 181 0% 156 19.9% 1 100% probably_damaging(0.997) tolerated(0.62) deleterious(0.470) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF26B 55083 genome.wustl.edu 37 1 245766055 245766055 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018012.3 +1 provisional p.F509 0.945 264 0% 236 25.4% 2 0% - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF26B 55083 genome.wustl.edu 37 1 245770973 245770973 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018012.3 +1 provisional p.T526 0.005 139 0% 134 23.9% 0 - - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases CNST 163882 genome.wustl.edu 37 1 246811240 246811240 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152609.2 +1 validated p.L579 0.999 105 0% 84 16.7% 10 30% - - - NULL AHCTF1 25909 genome.wustl.edu 37 1 247013475 247013475 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015446.4 -1 validated p.P1945S 0.000 342 0% 170 20.6% 26 26.9% benign(0) tolerated(1) - NULL AHCTF1 25909 genome.wustl.edu 37 1 247021041 247021041 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015446.4 -1 validated p.P1403L 0.000 288 0% 222 19.4% 7 42.8% benign(0.071) tolerated(0.08) neutral(0.305) NULL AHCTF1 25909 genome.wustl.edu 37 1 247058038 247058038 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015446.4 -1 validated p.S576Y 1.000 307 0% 173 24.9% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL AHCTF1 25909 genome.wustl.edu 37 1 247068848 247068848 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015446.4 -1 validated p.Q292 0.997 272 0% 129 22.5% 3 0% - - - NULL ZNF670 93474 genome.wustl.edu 37 1 247201035 247201035 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033213.2 -1 validated p.L296I 0.005 372 0% 418 29.7% 6 66.6% benign(0.096) tolerated(0.05) neutral(0.352) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF670 93474 genome.wustl.edu 37 1 247201249 247201249 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033213.2 -1 validated p.P224 0.833 275 0% 333 30.6% 4 75% - - - superfamily_SSF57667 ZNF670 93474 genome.wustl.edu 37 1 247202719 247202719 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033213.2 -1 validated p.S42P 0.628 361 0% 279 22.9% 3 100% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box NLRP3 114548 genome.wustl.edu 37 1 247611774 247611774 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079821.2 +1 reviewed p.E1027K 0.017 233 0% 222 18% 2 0% possibly_damaging(0.9) tolerated(0.25) neutral(0.393) superfamily_SSF52047 TRIM58 25893 genome.wustl.edu 37 1 248028214 248028214 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015431.3 +1 validated p.R242C 0.002 23 0% 31 19.4% 0 - benign(0.041) deleterious(0.01) neutral(0.408) NULL OR2T8 343172 genome.wustl.edu 37 1 248084325 248084325 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005522.1 +1 validated p.E2D 0.005 388 0% 206 22.3% 0 - benign(0.004) tolerated(0.12) neutral(0.261) superfamily_SSF81321 OR2AK2 391191 genome.wustl.edu 37 1 248129590 248129590 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004491.1 +1 provisional p.L319 0.000 353 0% 133 14.3% 0 - - - - superfamily_SSF81321 OR2L3 391192 genome.wustl.edu 37 1 248224556 248224556 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004687.1 +1 provisional p.T191 0.000 1023 0% 468 18.8% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR2L13 284521 genome.wustl.edu 37 1 248262920 248262920 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175911.2 +1 provisional p.A81 0.000 383 0% 167 25.7% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR2T12 127064 genome.wustl.edu 37 1 248458789 248458789 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004692.1 -1 provisional p.A31V 0.000 428 0.2% 207 13% 0 - benign(0) tolerated(0.85) neutral(0.001) superfamily_SSF81321 OR2T2 401992 genome.wustl.edu 37 1 248616776 248616776 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004136.1 +1 provisional p.V226 0.000 574 0% 138 22.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR2T3 343173 genome.wustl.edu 37 1 248637162 248637162 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005495.1 +1 provisional p.F171I 0.001 455 0% 103 12.6% 0 - probably_damaging(0.973) tolerated(0.11) deleterious(0.686) HMMPfam_7tm_1,superfamily_SSF81321 OR2T3 343173 genome.wustl.edu 37 1 248637502 248637502 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005495.1 +1 provisional p.T284I 0.390 555 0% 174 12.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OR2T10 127069 genome.wustl.edu 37 1 248756465 248756465 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004693.1 -1 provisional p.C202Y 0.005 218 0% 229 23.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZNF692 55657 genome.wustl.edu 37 1 249151512 249151512 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136036.1 -1 provisional p.E137 0.665 218 0.5% 220 22.7% 10 30% - - - NULL PGBD2 267002 genome.wustl.edu 37 1 249212090 249212090 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170725.2 +1 validated p.R436H 0.000 159 0.6% 98 20.4% 7 42.8% benign(0) tolerated(0.18) neutral(0.056) NULL SH3YL1 26751 genome.wustl.edu 37 2 233195 233195 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015677.2 -1 validated p.A51T 0.826 179 0% 180 19.4% 23 21.7% probably_damaging(0.969) tolerated(0.09) deleterious(0.708) HMMPfam_DUF500 SNTG2 54221 genome.wustl.edu 37 2 1161317 1161317 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018968.3 +1 reviewed p.P165 0.677 182 0% 128 18% 0 - - - - superfamily_PDZ domain-like PXDN 7837 genome.wustl.edu 37 2 1638058 1638058 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012293.1 -1 validated p.P1453H 0.993 45 0% 52 13.5% 9 11.1% probably_damaging(0.995) deleterious(0.03) deleterious(0.822) HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1 PXDN 7837 genome.wustl.edu 37 2 1647349 1647349 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012293.1 -1 validated e19-1 1.000 46 0% 54 16.7% 0 - - - - - PXDN 7837 genome.wustl.edu 37 2 1652066 1652066 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012293.1 -1 validated p.G1162 1.000 71 0% 70 31.4% 3 0% - - - HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases PXDN 7837 genome.wustl.edu 37 2 1652350 1652350 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012293.1 -1 validated p.A1068T 1.000 72 1.4% 83 28.9% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases PXDN 7837 genome.wustl.edu 37 2 1657454 1657454 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012293.1 -1 validated p.Q684* 1.000 228 0% 196 15.3% 1 0% - - - NULL PXDN 7837 genome.wustl.edu 37 2 1664726 1664726 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433670 -1 known p.T584M 0.005 240 0% 228 12.3% 7 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin MYT1L 23040 genome.wustl.edu 37 2 1844538 1844538 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015025.2 -1 validated p.P949L 1.000 917 0% 836 22% 0 - probably_damaging(1) tolerated(0.42) deleterious(0.514) HMMPfam_zf-C2HC,superfamily_SSF103637 MYT1L 23040 genome.wustl.edu 37 2 1895992 1895992 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015025.2 -1 validated p.S698 1.000 27 0% 16 25% 0 - - - - HMMPfam_MYT1 MYT1L 23040 genome.wustl.edu 37 2 1946848 1946848 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015025.2 -1 validated p.E137D 0.997 686 0.1% 456 12.7% 0 - unknown(0) tolerated(0.57) - NULL TRAPPC12 51112 genome.wustl.edu 37 2 3391890 3391890 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016030.5 +1 validated p.R166C 0.006 6 0.000 10 0.400 3 66.6% possibly_damaging(0.848) tolerated(0.08) deleterious(0.625) NULL TRAPPC12 51112 genome.wustl.edu 37 2 3483003 3483003 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016030.5 +1 validated p.A660D 1.000 80 0% 67 17.9% 122 31.9% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452 COLEC11 78989 genome.wustl.edu 37 2 3652010 3652010 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024027.3 +1 validated p.P27L 0.535 187 0% 207 24.2% 0 - benign(0.012) tolerated(0.18) neutral(0.057) NULL ALLC 55821 genome.wustl.edu 37 2 3743930 3743930 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018436.3 +1 validated p.I245L 0.000 320 0% 392 21.4% 0 - benign(0.006) deleterious(0.02) neutral(0.383) superfamily_Gal_bind_like,HMMPfam_Allantoicase SOX11 6664 genome.wustl.edu 37 2 5833144 5833144 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003108.3 +1 reviewed p.P97 1.000 31 0% 48 25% 0 - - - - HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box CMPK2 129607 genome.wustl.edu 37 2 6991696 6991696 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207315.2 -1 validated p.L371I 0.990 238 0% 132 21.2% 17 41.1% possibly_damaging(0.537) tolerated(0.08) deleterious(0.481) HMMPfam_Thymidylate_kin,superfamily_P-loop containing nucleoside triphosphate hydrolases CMPK2 129607 genome.wustl.edu 37 2 7003693 7003693 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207315.2 -1 validated p.P231H 1.000 204 0% 313 21.7% 7 28.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL RNF144A 9781 genome.wustl.edu 37 2 7154680 7154680 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014746.3 +1 reviewed p.Q77H 1.000 253 0% 164 25.6% 3 33.3% possibly_damaging(0.716) tolerated(0.07) deleterious(0.578) NULL KIDINS220 57498 genome.wustl.edu 37 2 8934087 8934087 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020738.2 -1 validated p.R377C 1.000 262 0% 172 26.2% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ASAP2 8853 genome.wustl.edu 37 2 9463365 9463365 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003887.2 +1 reviewed p.L196 1.000 78 0% 46 28.3% 8 62.5% - - - NULL ASAP2 8853 genome.wustl.edu 37 2 9498962 9498962 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003887.2 +1 reviewed p.H469N 1.000 250 0% 112 14.3% 7 42.8% possibly_damaging(0.629) deleterious(0) deleterious(0.664) HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain ITGB1BP1 9270 genome.wustl.edu 37 2 9548306 9548306 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004763.3 -1 reviewed p.P106L 0.584 152 0% 110 24.5% 69 30.4% benign(0) tolerated(0.43) neutral(0.013) HMMSmart_SM00462,HMMPfam_ICAP-1_inte_bdg CPSF3 51692 genome.wustl.edu 37 2 9580721 9580721 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016207.2 +1 provisional p.A288T 1.000 375 0.3% 192 20.3% 60 45% benign(0.014) tolerated(0.29) neutral(0.030) NULL CPSF3 51692 genome.wustl.edu 37 2 9582038 9582038 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016207.2 +1 provisional p.S343I 1.000 446 0% 172 16.3% 70 44.2% benign(0.13) tolerated(0.05) neutral(0.356) NULL TAF1B 9014 genome.wustl.edu 37 2 10050891 10050891 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005680.2 +1 reviewed p.V328M 0.936 455 0% 241 26.6% 11 27.2% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL TAF1B 9014 genome.wustl.edu 37 2 10051642 10051642 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005680.2 +1 reviewed p.S379Y 0.987 205 0% 182 22.5% 3 33.3% possibly_damaging(0.46) tolerated(0.52) neutral(0.160) NULL PDIA6 10130 genome.wustl.edu 37 2 10929938 10929938 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005742.2 -1 validated p.S259 0.001 102 0% 59 18.6% 405 41.7% - - - superfamily_Thioredoxin-like,HMMPfam_Thioredoxin KCNF1 3754 genome.wustl.edu 37 2 11053721 11053721 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002236.4 +1 reviewed p.S390I 1.000 169 0% 194 25.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ROCK2 9475 genome.wustl.edu 37 2 11337450 11337450 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004850.3 -1 reviewed p.R1102* 1.000 307 0% 193 19.2% 6 0% - - - NULL GREB1 9687 genome.wustl.edu 37 2 11741034 11741034 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014668.3 +1 reviewed p.H814 0.986 222 0% 215 22.3% 0 - - - - NULL LPIN1 23175 genome.wustl.edu 37 2 11923987 11923987 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145693.1 +1 reviewed p.V397I 1.000 346 0% 405 19.8% 1 0% benign(0.005) tolerated(1) - NULL TRIB2 28951 genome.wustl.edu 37 2 12863520 12863520 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021643.3 +1 reviewed p.G135 1.000 190 0% 178 15.2% 28 39.2% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) TRIB2 28951 genome.wustl.edu 37 2 12880552 12880552 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021643.3 +1 reviewed p.E222* 1.000 77 0% 46 13% 24 4.1% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MYCN 4613 genome.wustl.edu 37 2 16085655 16085655 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005378.4 +1 reviewed p.I277 0.961 187 0.5% 170 25.9% 2 50% - - - HMMPfam_Myc_N FAM49A 81553 genome.wustl.edu 37 2 16742308 16742308 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030797.3 -1 validated p.T220 0.997 674 0% 201 19.9% 7 0% - - - HMMPfam_DUF1394 FAM49A 81553 genome.wustl.edu 37 2 16743285 16743285 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030797.3 -1 validated p.F141 0.960 330 0% 123 13% 6 0% - - - HMMPfam_DUF1394 FAM49A 81553 genome.wustl.edu 37 2 16745284 16745284 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030797.3 -1 validated p.R91 1.000 350 0% 134 17.9% 0 - - - - HMMPfam_DUF1394 RAD51AP2 729475 genome.wustl.edu 37 2 17698531 17698531 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099218.2 -1 provisional p.Y384 0.009 109 0% 159 13.8% 0 - - - - NULL GEN1 348654 genome.wustl.edu 37 2 17946293 17946293 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130009.1 +1 validated p.L160I 1.000 381 0.3% 251 13.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_XPG_I,HMMSmart_SM00484,superfamily_PIN domain-like GEN1 348654 genome.wustl.edu 37 2 17962213 17962213 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130009.1 +1 validated p.S578 0.000 163 0% 65 26.2% 3 33.3% - - - NULL MSGN1 343930 genome.wustl.edu 37 2 17998322 17998322 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105569.1 +1 provisional p.T179 0.548 40 0% 49 26.5% 0 - - - - HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic NT5C1B 93034 genome.wustl.edu 37 2 18768378 18768378 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002006.1 -1 validated p.S61L 0.998 52 0% 68 22.1% 0 - possibly_damaging(0.952) deleterious(0) deleterious(0.840) NULL OSR1 130497 genome.wustl.edu 37 2 19553536 19553536 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145260.2 -1 validated p.P11S 1.000 188 0% 150 19.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL WDR35 57539 genome.wustl.edu 37 2 20178626 20178626 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006657.1 -1 reviewed p.E108K 1.000 427 0% 245 18.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like MATN3 4148 genome.wustl.edu 37 2 20205661 20205661 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002381.4 -1 reviewed p.A212S 1.000 30 0% 40 37.5% 0 - benign(0.113) tolerated(0.53) neutral(0.017) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like HS1BP3 64342 genome.wustl.edu 37 2 20823725 20823725 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415264 -1 known p.Q37* 0.960 82 0% 60 15% 31 16.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL HS1BP3 64342 genome.wustl.edu 37 2 20838209 20838209 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022460.3 -1 reviewed p.L204M 0.995 227 0% 244 14.8% 32 21.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL APOB 338 genome.wustl.edu 37 2 21226055 21226055 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000384.2 -1 reviewed p.V4080D 0.006 253 0% 78 32.1% 0 - benign(0.033) - - NULL APOB 338 genome.wustl.edu 37 2 21228320 21228320 + Frame_Shift_Del DEL A A - novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000384.2 -1 reviewed p.L3807fs 0.033 - - - - - - - - - NULL ATAD2B 54454 genome.wustl.edu 37 2 24011466 24011466 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017552.1 -1 validated p.P898S 1.000 451 0.2% 256 22.7% 1 0% possibly_damaging(0.463) tolerated(0.06) deleterious(0.475) superfamily_P-loop containing nucleoside triphosphate hydrolases C2orf44 80304 genome.wustl.edu 37 2 24255812 24255812 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025203.2 -1 validated p.P608H 0.010 309 0% 180 23.3% 6 50% benign(0.354) deleterious(0.05) neutral(0.457) NULL C2orf44 80304 genome.wustl.edu 37 2 24261592 24261592 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025203.2 -1 validated p.R258H 0.000 217 0% 93 18.3% 1 0% benign(0.013) tolerated(0.55) neutral(0.007) NULL C2orf44 80304 genome.wustl.edu 37 2 24262009 24262009 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025203.2 -1 validated p.C119Y 1.000 171 0% 107 19.6% 4 50% probably_damaging(0.962) deleterious(0.02) deleterious(0.788) NULL TP53I3 9540 genome.wustl.edu 37 2 24305999 24305999 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004881.2 -1 reviewed p.P54 0.922 32 0% 51 11.8% 34 14.7% - - - superfamily_GroES-like,HMMPfam_ADH_N ITSN2 50618 genome.wustl.edu 37 2 24431969 24431969 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006277.2 -1 reviewed p.R1532M 1.000 164 0% 122 23% 11 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like ADCY3 109 genome.wustl.edu 37 2 25064178 25064178 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004036.3 -1 reviewed p.D382 1.000 57 0% 64 23.4% 4 50% - - - HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase EFR3B 22979 genome.wustl.edu 37 2 25362036 25362036 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014971.1 +1 validated p.A611T 1.000 99 0% 100 17% 0 - benign(0) tolerated(1) - NULL EFR3B 22979 genome.wustl.edu 37 2 25377150 25377150 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014971.1 +1 validated p.P799S 0.998 460 0% 380 21.1% 2 0% benign(0) tolerated(0.68) neutral(0.002) NULL DNMT3A 1788 genome.wustl.edu 37 2 25469629 25469629 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022552.3 -1 reviewed p.A380V 0.986 33 0% 24 20.8% 12 8.3% probably_damaging(0.97) deleterious(0.02) deleterious(0.795) superfamily_Tudor/PWWP/MBT ASXL2 55252 genome.wustl.edu 37 2 25965639 25965639 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018263.4 -1 validated p.E1189 0.973 355 0% 263 10.6% 1 0% - - - NULL ASXL2 55252 genome.wustl.edu 37 2 25982440 25982440 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018263.4 -1 validated p.R284* 0.937 523 0% 244 21.7% 1 0% - - - NULL KIF3C 3797 genome.wustl.edu 37 2 26151884 26151884 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002254.6 -1 validated p.A782V 0.880 190 0% 150 27.3% 1 0% benign(0.001) tolerated(0.26) neutral(0.034) NULL KIF3C 3797 genome.wustl.edu 37 2 26203511 26203511 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002254.6 -1 validated p.V426M 0.060 174 0% 198 20.7% 1 0% possibly_damaging(0.449) tolerated(0.09) neutral(0.444) NULL FAM59B 150946 genome.wustl.edu 37 2 26410965 26410965 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000380681 +1 known p.G935R 1.000 122 0% 152 24.3% 7 28.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_SAM_1,superfamily_SAM/Pointed domain HADHA 3030 genome.wustl.edu 37 2 26435480 26435480 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000182.4 -1 reviewed p.I312L 0.051 392 0% 104 16.3% 135 40% benign(0) tolerated(0.97) - superfamily_ClpP/crotonase GPR113 165082 genome.wustl.edu 37 2 26533871 26533871 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145168.1 -1 validated p.G909W 0.001 122 0% 79 22.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_7tm_2 OTOF 9381 genome.wustl.edu 37 2 26686436 26686436 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194248.2 -1 reviewed p.R1703C 1.000 29 0% 44 15.9% 6 100% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_C2 domain (Calcium/lipid-binding domain CaLB) OTOF 9381 genome.wustl.edu 37 2 26702406 26702406 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194248.2 -1 reviewed p.A676 0.000 39 0% 29 20.7% 0 - - - - NULL KCNK3 3777 genome.wustl.edu 37 2 26950540 26950540 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002246.2 +1 reviewed p.G97R 1.000 38 0% 48 16.7% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels KCNK3 3777 genome.wustl.edu 37 2 26951019 26951019 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002246.2 +1 reviewed p.R256 0.999 37 0% 41 19.5% 0 - - - - superfamily_Voltage-gated potassium channels C2orf18 54978 genome.wustl.edu 37 2 26987226 26987226 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017877.3 +1 validated p.W3C 1.000 21 0% 18 33.3% 25 48% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL C2orf18 54978 genome.wustl.edu 37 2 27001215 27001215 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017877.3 +1 validated p.L318 0.992 106 0% 107 19.6% 77 36.3% - - - NULL MAPRE3 22924 genome.wustl.edu 37 2 27246265 27246265 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012326.2 +1 reviewed p.F63V 1.000 143 0% 156 22.4% 2 50% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) HMMPfam_CH,superfamily_Calponin-homology domain CH-domain TMEM214 54867 genome.wustl.edu 37 2 27258858 27258858 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017727.4 +1 validated p.R220C 1.000 307 0% 282 18.4% 45 31.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF2359 AGBL5 60509 genome.wustl.edu 37 2 27276360 27276360 + Nonsense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021831.5 +1 validated p.Y102* 1.000 161 0% 122 23% 18 33.3% - - - NULL AGBL5 60509 genome.wustl.edu 37 2 27276385 27276385 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021831.5 +1 validated p.R111C 1.000 122 0% 102 18.6% 16 75% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL AGBL5 60509 genome.wustl.edu 37 2 27279542 27279542 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021831.5 +1 validated p.D473N 1.000 214 0% 172 15.7% 15 6.6% possibly_damaging(0.773) deleterious(0.02) deleterious(0.670) superfamily_Zn-dependent exopeptidases AGBL5 60509 genome.wustl.edu 37 2 27293065 27293065 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021831.5 +1 validated p.P865 0.578 508 0% 656 20.4% 12 41.6% - - - NULL EMILIN1 11117 genome.wustl.edu 37 2 27305087 27305087 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007046.3 +1 reviewed p.T216 0.009 28 0% 35 20% 13 0% - - - NULL EMILIN1 11117 genome.wustl.edu 37 2 27306297 27306297 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007046.3 +1 reviewed p.G620C 0.993 26 0% 23 30.4% 14 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL SLC5A6 8884 genome.wustl.edu 37 2 27423902 27423902 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021095.2 -1 validated p.S576 0.981 188 0% 122 19.7% 51 43.1% - - - NULL SLC5A6 8884 genome.wustl.edu 37 2 27424579 27424579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021095.2 -1 validated p.T500I 0.906 238 0% 151 17.9% 47 38.2% benign(0.068) tolerated(0.05) neutral(0.350) NULL CAD 790 genome.wustl.edu 37 2 27448716 27448716 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004341.3 +1 reviewed p.V588 1.000 369 0% 280 18.6% 8 37.5% - - - HMMPfam_CPSase_L_D2,superfamily_SSF56059 CAD 790 genome.wustl.edu 37 2 27455315 27455315 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004341.3 +1 reviewed e18-1 1.000 171 0% 130 13.8% 0 - - - - - DNAJC5G 285126 genome.wustl.edu 37 2 27503033 27503033 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173650.1 +1 provisional e4-1 0.497 459 0% 328 25.6% 0 - - - - - GTF3C2 2976 genome.wustl.edu 37 2 27550095 27550095 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035521.1 -1 validated p.E822D 0.999 115 0% 78 16.7% 85 31.7% possibly_damaging(0.946) deleterious(0) deleterious(0.835) superfamily_WD40 repeat-like SNX17 9784 genome.wustl.edu 37 2 27598412 27598412 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014748.2 +1 reviewed p.L272V 1.000 73 0% 79 25.3% 141 42.5% benign(0) tolerated(0.06) neutral(0.323) HMMPfam_FERM_M SNX17 9784 genome.wustl.edu 37 2 27599479 27599479 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014748.2 +1 reviewed p.L436 1.000 447 0.2% 475 13.1% 214 16.3% - - - NULL ZNF513 130557 genome.wustl.edu 37 2 27600824 27600824 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144631.4 -1 validated p.R405Q 1.000 86 0% 103 22.3% 25 36% possibly_damaging(0.939) tolerated(0.25) neutral(0.421) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers NRBP1 29959 genome.wustl.edu 37 2 27656162 27656162 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013392.2 +1 validated p.T8S 1.000 201 0% 141 24.1% 54 33.3% - - - NULL NRBP1 29959 genome.wustl.edu 37 2 27663710 27663710 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013392.2 +1 validated p.R411Q 1.000 118 0% 140 15.7% 133 33% possibly_damaging(0.812) tolerated(0.4) neutral(0.322) NULL IFT172 26160 genome.wustl.edu 37 2 27672168 27672168 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015662.1 -1 validated p.T1435I 1.000 246 0% 177 15.8% 15 66.6% benign(0.017) tolerated(0.15) neutral(0.241) NULL GCKR 2646 genome.wustl.edu 37 2 27721181 27721181 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001486.3 +1 reviewed p.F115L 1.000 155 0% 224 21% 0 - benign(0.004) tolerated(0.08) neutral(0.300) superfamily_SIS domain GCKR 2646 genome.wustl.edu 37 2 27746260 27746260 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001486.3 +1 reviewed p.K611T 0.227 84 0% 39 10.3% 1 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL C2orf16 84226 genome.wustl.edu 37 2 27803514 27803514 + Missense_Mutation SNP C C T rs143205707 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032266.3 +1 validated p.R1359W 0.285 120 0.8% 95 27.4% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL ZNF512 84450 genome.wustl.edu 37 2 27822540 27822540 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032434.2 +1 validated p.L123H 1.000 435 0% 306 11.1% 14 7.1% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL GPN1 11321 genome.wustl.edu 37 2 27861103 27861103 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007266.3 +1 reviewed p.F198S 1.000 610 0% 296 23% 36 41.6% benign(0.229) deleterious(0) neutral(0.468) HMMPfam_ATP_bind_1,superfamily_SSF52540 ENSG00000223522 0 genome.wustl.edu 37 2 28532847 28532847 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000418963 -1 known NULL 0.000 201 0% 126 30.2% 0 - - - - - FOSL2 2355 genome.wustl.edu 37 2 28631654 28631654 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005253.3 +1 reviewed p.R128H 1.000 45 0% 57 12.3% 41 48.7% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMSmart_SM00338,HMMPfam_bZIP_2 FOSL2 2355 genome.wustl.edu 37 2 28635083 28635083 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005253.3 +1 reviewed p.S250N 1.000 20 0% 30 23.3% 35 40% benign(0) tolerated(0.28) neutral(0.032) NULL PLB1 151056 genome.wustl.edu 37 2 28772923 28772923 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153021.4 +1 validated p.R352K 0.009 274 0% 118 20.3% 0 - benign(0.045) tolerated(0.36) neutral(0.022) NULL PLB1 151056 genome.wustl.edu 37 2 28854923 28854923 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000404858 +1 known p.P1294H 0.410 250 0.4% 148 20.3% 4 25% - - - HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase WDR43 23160 genome.wustl.edu 37 2 29137006 29137006 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015131.1 +1 validated p.Q226 0.998 342 0% 244 20.9% 16 43.7% - - - HMMSmart_WD40,superfamily_WD40_like FAM179A 165186 genome.wustl.edu 37 2 29237302 29237302 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199280.2 +1 validated p.A307T 0.000 123 0% 125 27.2% 1 0% benign(0.14) tolerated(0.11) neutral(0.284) NULL FAM179A 165186 genome.wustl.edu 37 2 29245064 29245064 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199280.2 +1 validated p.E467 0.863 262 0% 210 19% 1 0% - - - superfamily_ARM repeat C2orf71 388939 genome.wustl.edu 37 2 29287819 29287819 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029883.1 -1 provisional p.H1261 0.964 32 0% 31 16.1% 0 - - - - NULL ALK 238 genome.wustl.edu 37 2 29416607 29416607 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004304.3 -1 reviewed p.S1449Y 0.396 100 0% 53 13.2% 0 - benign(0.052) deleterious(0.01) neutral(0.409) NULL GALNT14 79623 genome.wustl.edu 37 2 31133788 31133788 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024572.2 -1 validated p.H546Q 1.000 178 0% 84 22.6% 147 35.3% benign(0.261) tolerated(1) neutral(0.027) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins CAPN14 440854 genome.wustl.edu 37 2 31420130 31420130 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145122.1 -1 validated p.G287V 1.000 641 0% 386 24.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases EHD3 30845 genome.wustl.edu 37 2 31483576 31483576 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014600.2 +1 validated p.A235T 1.000 232 0% 133 12% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_P-loop containing nucleoside triphosphate hydrolases XDH 7498 genome.wustl.edu 37 2 31587053 31587053 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000379.3 -1 reviewed p.V868M 0.996 208 0% 103 26.2% 1 100% benign(0.012) deleterious(0) neutral(0.445) HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd SLC30A6 55676 genome.wustl.edu 37 2 32445675 32445675 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017964.2 +1 provisional p.G427* 1.000 212 0% 47 27.7% 17 41.1% - - - NULL NLRC4 58484 genome.wustl.edu 37 2 32476527 32476527 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000360906 -1 known p.E136* 1.000 181 0% 108 32.4% 2 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases BIRC6 57448 genome.wustl.edu 37 2 32613983 32613983 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016252.3 +1 reviewed p.G271R 1.000 309 0.3% 143 29.4% 4 25% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL BIRC6 57448 genome.wustl.edu 37 2 32640546 32640546 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016252.3 +1 reviewed p.E729D 1.000 186 0% 120 15.8% 0 - possibly_damaging(0.882) tolerated(0.42) neutral(0.358) NULL BIRC6 57448 genome.wustl.edu 37 2 32664657 32664657 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016252.3 +1 reviewed p.G1238V 1.000 346 0% 282 26.2% 2 50% possibly_damaging(0.876) deleterious(0.03) deleterious(0.706) NULL BIRC6 57448 genome.wustl.edu 37 2 32693798 32693798 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016252.3 +1 reviewed p.T2025N 1.000 397 0% 185 10.3% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL BIRC6 57448 genome.wustl.edu 37 2 32724749 32724749 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016252.3 +1 reviewed p.H2868 0.992 457 0% 257 15.6% 0 - - - - NULL BIRC6 57448 genome.wustl.edu 37 2 32820188 32820188 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016252.3 +1 reviewed p.A4530V 1.000 134 0% 67 19.4% 25 20% benign(0) tolerated(0.07) neutral(0.319) NULL TTC27 55622 genome.wustl.edu 37 2 32903922 32903922 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017735.3 +1 provisional e9-1 1.000 281 0% 188 22.3% 0 - - - - - LTBP1 4052 genome.wustl.edu 37 2 33622306 33622306 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206943.2 +1 reviewed p.C1648* 1.000 533 0% 205 21.5% 45 31.1% - - - HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin RASGRP3 25780 genome.wustl.edu 37 2 33783812 33783812 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001139488.1 +1 validated p.L593 1.000 176 0.6% 125 32% 1 0% - - - NULL VIT 5212 genome.wustl.edu 37 2 37032684 37032684 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053276.3 +1 validated p.T422 0.001 151 0% 99 20.2% 0 - - - - HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 HEATR5B 54497 genome.wustl.edu 37 2 37241150 37241150 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019024.1 -1 validated p.W1373* 1.000 128 0% 55 21.8% 8 0% - - - NULL HEATR5B 54497 genome.wustl.edu 37 2 37292131 37292131 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019024.1 -1 validated p.L446I 0.996 110 0% 52 23.1% 3 33.3% benign(0.076) tolerated(0.65) neutral(0.009) superfamily_ARM repeat EIF2AK2 5610 genome.wustl.edu 37 2 37336408 37336408 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135651.1 -1 validated p.D470Y 1.000 301 0% 124 20.2% 55 50.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase EIF2AK2 5610 genome.wustl.edu 37 2 37353432 37353432 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135651.1 -1 validated p.E303V 0.924 265 0% 130 19.2% 19 42.1% benign(0.17) deleterious(0.01) neutral(0.421) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SULT6B1 391365 genome.wustl.edu 37 2 37398617 37398617 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032377.1 -1 provisional p.Q209H 0.990 278 0% 208 10.1% 0 - possibly_damaging(0.565) tolerated(0.07) deleterious(0.512) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases CEBPZ 10153 genome.wustl.edu 37 2 37455473 37455473 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005760.2 -1 validated p.T288I 1.000 181 0% 145 22.8% 17 52.9% possibly_damaging(0.714) deleterious(0.01) deleterious(0.663) NULL C2orf56 55471 genome.wustl.edu 37 2 37464951 37464951 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144736.4 +1 validated p.A117T 0.010 140 0% 171 22.8% 8 37.5% benign(0.001) tolerated(0.21) neutral(0.044) HMMPfam_DUF185 C2orf56 55471 genome.wustl.edu 37 2 37475277 37475277 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144736.4 +1 validated e10-1 1.000 323 0% 176 22.7% 0 - - - - - DHX57 90957 genome.wustl.edu 37 2 39075457 39075457 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452978 -1 known p.A30T 0.998 191 0% 88 25% 6 83.3% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases SOS1 6654 genome.wustl.edu 37 2 39250137 39250137 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005633.3 -1 reviewed p.P478S 1.000 285 0% 97 17.5% 3 33.3% benign(0) tolerated(0.38) neutral(0.018) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like SOS1 6654 genome.wustl.edu 37 2 39250280 39250280 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005633.3 -1 reviewed p.D430A 1.000 162 0% 50 10% 3 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) superfamily_PH domain-like CDKL4 344387 genome.wustl.edu 37 2 39431725 39431725 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009565.1 -1 provisional p.L133I 0.999 344 0.3% 240 16.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase MAP4K3 8491 genome.wustl.edu 37 2 39505612 39505612 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003618.2 -1 reviewed p.F577C 1.000 207 0% 238 11.8% 9 11.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_CNH,HMMSmart_SM00036 MAP4K3 8491 genome.wustl.edu 37 2 39515273 39515273 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003618.2 -1 reviewed p.P488H 0.992 616 0% 282 21.3% 5 80% benign(0.013) deleterious(0.05) neutral(0.346) superfamily_Protein kinase-like (PK-like) TMEM178 130733 genome.wustl.edu 37 2 39931277 39931277 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152390.2 +1 validated p.R153* 1.000 236 0% 194 20.6% 1 100% - - - NULL SLC8A1 6546 genome.wustl.edu 37 2 40657409 40657409 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021097.2 -1 validated p.M4I 0.993 116 0% 38 21.1% 1 0% benign(0.258) tolerated(0.07) neutral(0.346) NULL MTA3 57504 genome.wustl.edu 37 2 42836642 42836642 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020744.2 +1 provisional p.T79A 1.000 238 0% 287 21.3% 22 59% benign(0.006) tolerated(0.07) neutral(0.319) HMMPfam_BAH,HMMSmart_BAH MTA3 57504 genome.wustl.edu 37 2 42931414 42931414 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020744.2 +1 provisional p.Q369L 0.801 289 0% 184 19% 46 8.6% benign(0.01) tolerated(0.37) neutral(0.019) NULL ZFP36L2 678 genome.wustl.edu 37 2 43453431 43453431 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006887.4 -1 reviewed p.A8 1.000 75 0% 57 26.3% 54 40.7% - - - NULL THADA 63892 genome.wustl.edu 37 2 43779469 43779469 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083953.1 -1 validated p.C895Y 0.998 123 0% 77 19.5% 9 44.4% benign(0) tolerated(0.38) neutral(0.018) superfamily_ARM repeat THADA 63892 genome.wustl.edu 37 2 43814130 43814130 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083953.1 -1 validated p.S105I 0.994 194 0% 126 19% 2 0% possibly_damaging(0.837) deleterious(0.01) deleterious(0.725) NULL THADA 63892 genome.wustl.edu 37 2 43819494 43819494 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083953.1 -1 validated p.A13V 0.754 129 0% 105 22.9% 3 66.6% possibly_damaging(0.624) tolerated(0.11) deleterious(0.489) NULL PLEKHH2 130271 genome.wustl.edu 37 2 43927611 43927611 + Missense_Mutation SNP C C T rs147485721 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172069.3 +1 validated p.T505M 0.174 296 0% 159 22% 0 - benign(0.395) tolerated(0.35) neutral(0.147) NULL PLEKHH2 130271 genome.wustl.edu 37 2 43984381 43984381 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172069.3 +1 validated p.G1307S 1.000 272 0% 150 21.3% 1 0% benign(0.013) tolerated(0.2) neutral(0.050) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 ABCG8 64241 genome.wustl.edu 37 2 44073329 44073329 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022437.2 +1 reviewed p.Q67H 0.693 118 0% 93 20.4% 0 - benign(0) deleterious(0.05) neutral(0.345) superfamily_P-loop containing nucleoside triphosphate hydrolases LRPPRC 10128 genome.wustl.edu 37 2 44128599 44128599 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133259.3 -1 reviewed p.T1143 0.779 289 0% 121 21.5% 146 47.9% - - - superfamily_SSF48452 LRPPRC 10128 genome.wustl.edu 37 2 44190793 44190793 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133259.3 -1 reviewed p.Q474H 0.619 317 0% 170 17.6% 25 40% possibly_damaging(0.716) tolerated(0.22) neutral(0.301) HMMPfam_PPR CAMKMT 79823 genome.wustl.edu 37 2 44999213 44999213 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024766.3 +1 validated p.L311 1.000 226 0% 340 16.8% 35 40% - - - NULL SRBD1 55133 genome.wustl.edu 37 2 45645516 45645516 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018079.4 -1 validated p.R774Q 0.972 368 0.3% 240 28.3% 15 40% benign(0.044) tolerated(0.61) neutral(0.007) NULL PRKCE 5581 genome.wustl.edu 37 2 46228591 46228591 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005400.2 +1 reviewed p.N291S 1.000 199 0% 78 16.7% 1 100% benign(0.004) tolerated(0.83) neutral(0.001) HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain EPAS1 2034 genome.wustl.edu 37 2 46605884 46605884 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001430.4 +1 reviewed p.A511V 0.931 249 0% 214 24.3% 20 15% possibly_damaging(0.449) deleterious(0.05) deleterious(0.492) NULL ATP6V1E2 90423 genome.wustl.edu 37 2 46739485 46739485 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080653.3 -1 validated p.Q122H 0.998 156 0% 112 19.6% 8 50% benign(0.199) deleterious(0.03) neutral(0.384) HMMPfam_vATP-synt_E TTC7A 57217 genome.wustl.edu 37 2 47249102 47249102 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020458.2 +1 validated p.S498 1.000 70 0% 58 36.2% 17 41.1% - - - HMMSmart_SM00028,superfamily_TPR-like TTC7A 57217 genome.wustl.edu 37 2 47256503 47256503 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020458.2 +1 validated p.T594 0.072 64 0% 46 32.6% 22 45.4% - - - HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like MSH6 2956 genome.wustl.edu 37 2 48023108 48023108 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000179.2 +1 reviewed p.R178H 1.000 285 0% 171 22.8% 2 0% probably_damaging(0.997) tolerated(0.1) deleterious(0.752) superfamily_Tudor/PWWP/MBT MSH6 2956 genome.wustl.edu 37 2 48026707 48026707 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000179.2 +1 reviewed p.G529C 1.000 345 0.3% 142 21.8% 6 33.3% benign(0.403) tolerated(0.2) neutral(0.178) NULL MSH6 2956 genome.wustl.edu 37 2 48033396 48033396 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000179.2 +1 reviewed p.E1234* 1.000 286 0% 82 45.1% 8 62.5% - - - HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases MSH6 2956 genome.wustl.edu 37 2 48033641 48033641 + Silent SNP G G A rs2229018 byCluster;byFrequency TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000179.2 +1 reviewed p.T1284 0.931 143 0% 59 23.7% 23 17.3% - - - HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases FBXO11 80204 genome.wustl.edu 37 2 48036378 48036378 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025133.3 -1 reviewed p.A741D 1.000 573 0% 244 17.2% 34 29.4% probably_damaging(0.983) tolerated(0.31) neutral(0.456) HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383 PPP1R21 129285 genome.wustl.edu 37 2 48668082 48668082 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024188.1 +1 validated NULL 0.998 24 0% 25 44% 3 0% - - - - ENSG00000205011 0 genome.wustl.edu 37 2 48757048 48757048 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378305 +1 known p.G17 0.001 29 0% 29 13.8% 0 - - - - NULL STON1-GTF2A1L 286749 genome.wustl.edu 37 2 48897064 48897064 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172311.1 +1 reviewed p.E1098 0.995 270 0% 158 23.4% 0 - - - - HMMPfam_TFIIA FSHR 2492 genome.wustl.edu 37 2 49217706 49217706 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000145.3 -1 reviewed p.L149I 1.000 498 0% 358 12.8% 0 - possibly_damaging(0.832) deleterious(0.01) deleterious(0.723) superfamily_L domain-like FSHR 2492 genome.wustl.edu 37 2 49247298 49247298 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000145.3 -1 reviewed p.E76* 1.000 316 0% 82 18.3% 0 - - - - superfamily_L domain-like NRXN1 9378 genome.wustl.edu 37 2 50282165 50282165 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135659.1 -1 reviewed p.R1286C 1.000 239 0% 83 18.1% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 NRXN1 9378 genome.wustl.edu 37 2 50758472 50758472 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135659.1 -1 reviewed p.R787Q 1.000 141 0% 20 25% 0 - probably_damaging(1) tolerated(0.31) deleterious(0.527) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 NRXN1 9378 genome.wustl.edu 37 2 50847315 50847315 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135659.1 -1 reviewed p.I429L 1.000 156 0% 81 18.5% 0 - possibly_damaging(0.903) tolerated(0.31) neutral(0.385) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 NRXN1 9378 genome.wustl.edu 37 2 51254779 51254779 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135659.1 -1 reviewed p.S211 0.981 12 0% 10 50% 0 - - - - superfamily_ConA_like_lec_gl NRXN1 9378 genome.wustl.edu 37 2 51254859 51254859 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135659.1 -1 reviewed p.R185C 0.777 26 0% 22 18.2% 0 - possibly_damaging(0.7) deleterious(0.05) deleterious(0.597) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 ASB3 51130 genome.wustl.edu 37 2 53956607 53956607 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016115.3 -1 reviewed p.Q152H 1.000 270 0% 74 12.2% 6 33.3% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat PSME4 23198 genome.wustl.edu 37 2 54125012 54125012 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014614.2 -1 validated p.R1201* 1.000 231 0% 71 21.1% 11 18.1% - - - superfamily_ARM repeat PSME4 23198 genome.wustl.edu 37 2 54150254 54150254 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014614.2 -1 validated p.C637Y 1.000 259 0% 240 29.2% 2 0% possibly_damaging(0.537) deleterious(0.05) deleterious(0.527) NULL TSPYL6 388951 genome.wustl.edu 37 2 54482540 54482540 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003937.2 -1 validated p.G250D 0.971 118 0% 104 24% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NAP SPTBN1 6711 genome.wustl.edu 37 2 54856407 54856407 + Silent SNP G G A rs146810411 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003128.2 +1 reviewed p.S712 0.000 40 0% 31 19.4% 11 72.7% - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54872459 54872459 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003128.2 +1 reviewed p.E1455K 1.000 132 0% 81 18.5% 51 0% benign(0.024) tolerated(0.55) neutral(0.008) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54874274 54874274 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003128.2 +1 reviewed p.Q1625* 1.000 138 0% 50 20% 41 2.4% - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54876950 54876950 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003128.2 +1 reviewed p.L1801I 1.000 170 0% 100 18% 79 10.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54880912 54880912 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003128.2 +1 reviewed p.R1915H 1.000 48 0% 52 23.1% 63 68.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54895655 54895655 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003128.2 +1 reviewed p.D2348 1.000 58 0% 50 16% 92 6.5% - - - NULL EML6 400954 genome.wustl.edu 37 2 55074654 55074654 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039753.2 +1 validated p.A361T 1.000 115 0% 46 26.1% 0 - probably_damaging(0.996) tolerated(0.59) neutral(0.466) HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like EML6 400954 genome.wustl.edu 37 2 55143932 55143932 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039753.2 +1 validated p.L1179M 0.999 168 0% 63 22.2% 0 - probably_damaging(0.983) tolerated(0.06) deleterious(0.752) superfamily_WD40 repeat-like MTIF2 4528 genome.wustl.edu 37 2 55471199 55471199 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005369.1 -1 reviewed p.S426Y 1.000 268 0% 214 22.9% 32 40.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor CCDC88A 55704 genome.wustl.edu 37 2 55561946 55561946 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135597.1 -1 validated p.E671* 1.000 102 0% 103 24.3% 1 0% - - - NULL SMEK2 57223 genome.wustl.edu 37 2 55825883 55825883 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122964.1 -1 validated p.I197S 1.000 272 0% 164 26.2% 15 40% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_DUF625,superfamily_ARM repeat SMEK2 57223 genome.wustl.edu 37 2 55826136 55826136 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122964.1 -1 validated p.L113I 1.000 429 0% 344 18.6% 13 46.1% benign(0) tolerated(0.65) neutral(0.003) NULL PNPT1 87178 genome.wustl.edu 37 2 55883311 55883311 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033109.3 -1 validated p.F466V 1.000 370 0% 438 22.6% 20 40% benign(0.106) - - HMMPfam_RNase_PH,superfamily_Ribosomal_S5_D2-typ_fold EFEMP1 2202 genome.wustl.edu 37 2 56103765 56103765 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039348.1 -1 reviewed p.N291 1.000 137 0% 41 14.6% 4 0% - - - HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin EFEMP1 2202 genome.wustl.edu 37 2 56149572 56149572 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039348.1 -1 reviewed p.L2V 1.000 347 0% 373 21.4% 1 0% benign(0.008) deleterious(0) neutral(0.445) NULL KIAA1841 84542 genome.wustl.edu 37 2 61304145 61304145 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129993.1 +1 validated p.K174N 1.000 256 0% 148 20.3% 0 - probably_damaging(0.983) tolerated(0.24) neutral(0.466) NULL KIAA1841 84542 genome.wustl.edu 37 2 61308619 61308619 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129993.1 +1 validated p.S235T 1.000 159 0% 199 11.1% 4 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL USP34 9736 genome.wustl.edu 37 2 61455834 61455834 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000411912 -1 known p.A223T 0.962 286 0% 131 26% 14 28.5% - - - NULL USP34 9736 genome.wustl.edu 37 2 61512020 61512020 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014709.3 -1 validated p.L1608 1.000 124 0% 76 32.9% 3 66.6% - - - NULL USP34 9736 genome.wustl.edu 37 2 61541783 61541783 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014709.3 -1 validated p.S1160I 1.000 502 0% 262 18.7% 0 - possibly_damaging(0.81) - - NULL XPO1 7514 genome.wustl.edu 37 2 61709578 61709578 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003400.3 -1 reviewed p.N970S 1.000 512 0% 336 18.2% 114 45.6% probably_damaging(0.954) deleterious(0.02) deleterious(0.780) HMMPfam_CRM1_C,superfamily_ARM-type_fold EHBP1 23301 genome.wustl.edu 37 2 63220713 63220713 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015252.3 +1 reviewed p.R999C 1.000 266 0% 48 25% 13 53.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL OTX1 5013 genome.wustl.edu 37 2 63283434 63283434 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014562.2 +1 reviewed p.R350W 0.998 91 0% 132 16.7% 3 100% unknown(0) deleterious(0) - NULL WDPCP 51057 genome.wustl.edu 37 2 63631448 63631448 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015910.4 -1 validated p.A390 0.999 157 0% 44 25% 2 50% - - - NULL AFTPH 54812 genome.wustl.edu 37 2 64780403 64780403 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203437.2 +1 validated p.R599* 1.000 163 0.6% 134 20.1% 19 15.7% - - - NULL AFTPH 54812 genome.wustl.edu 37 2 64796285 64796285 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203437.2 +1 validated p.Y716C 1.000 290 0% 89 21.3% 20 60% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SERTAD2 9792 genome.wustl.edu 37 2 64863587 64863587 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014755.2 -1 validated p.D140G 0.973 108 0% 128 10.9% 5 20% benign(0.418) deleterious(0.04) deleterious(0.484) NULL SLC1A4 6509 genome.wustl.edu 37 2 65237843 65237843 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003038.3 +1 validated p.R249H 1.000 438 0.2% 169 27.2% 12 0% unknown(0) deleterious(0.04) - HMMPfam_SDF CEP68 23177 genome.wustl.edu 37 2 65298676 65298676 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015147.2 +1 validated p.A149D 0.786 148 0% 118 34.7% 3 33.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ACTR2 10097 genome.wustl.edu 37 2 65473766 65473766 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005386.2 +1 reviewed p.D95N 1.000 410 0% 204 20.1% 62 24.1% benign(0.028) tolerated(0.25) neutral(0.038) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain ACTR2 10097 genome.wustl.edu 37 2 65488418 65488418 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005386.2 +1 reviewed p.R263K 1.000 442 0% 230 23.9% 115 28.6% benign(0.019) deleterious(0.02) neutral(0.384) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain SPRED2 200734 genome.wustl.edu 37 2 65540795 65540795 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181784.2 -1 validated p.S366L 1.000 91 0% 87 21.8% 14 14.2% possibly_damaging(0.915) tolerated(0.06) deleterious(0.689) HMMPfam_Sprouty ETAA1 54465 genome.wustl.edu 37 2 67626429 67626429 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019002.3 +1 validated p.G118C 1.000 217 0% 260 20.8% 3 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL WDR92 116143 genome.wustl.edu 37 2 68358438 68358438 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138458.2 -1 validated p.L336I 0.995 301 0% 83 18.1% 15 13.3% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 PNO1 56902 genome.wustl.edu 37 2 68389771 68389771 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020143.2 +1 provisional p.R199Q 0.999 214 0% 169 33.7% 41 51.2% possibly_damaging(0.881) deleterious(0) deleterious(0.788) HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791 PLEK 5341 genome.wustl.edu 37 2 68607979 68607979 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002664.2 +1 validated p.K108T 1.000 226 0% 52 32.7% 8 0% possibly_damaging(0.89) tolerated(0.13) deleterious(0.603) NULL APLF 200558 genome.wustl.edu 37 2 68794511 68794511 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173545.2 +1 validated p.T442M 0.000 225 0% 49 14.3% 6 33.3% benign(0.083) tolerated(0.16) neutral(0.066) HMMPfam_zf-CCHH ARHGAP25 9938 genome.wustl.edu 37 2 68962346 68962346 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007231.2 +1 validated p.L5 0.994 517 0% 201 19.9% 4 0% - - - NULL ARHGAP25 9938 genome.wustl.edu 37 2 69034378 69034378 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000497259 +1 known p.G6S 0.000 236 0% 82 12.2% 0 - unknown(0) - - NULL GKN1 56287 genome.wustl.edu 37 2 69206014 69206014 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019617.3 +1 reviewed p.A86 0.249 168 0% 99 25.3% 0 - - - - HMMPfam_BRICHOS GFPT1 2673 genome.wustl.edu 37 2 69553340 69553340 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002056.2 -1 reviewed p.K676T 1.000 360 0% 213 13.6% 93 23.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF53697 GFPT1 2673 genome.wustl.edu 37 2 69586450 69586450 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002056.2 -1 reviewed p.V120I 1.000 250 0.4% 91 22% 27 37% possibly_damaging(0.86) tolerated(0.23) neutral(0.374) HMMPfam_GATase_2,superfamily_SSF56235 AAK1 22848 genome.wustl.edu 37 2 69769735 69769735 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014911.3 -1 reviewed p.L152I 1.000 258 0% 66 12.1% 1 0% probably_damaging(0.993) tolerated(0.13) deleterious(0.703) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase C2orf42 54980 genome.wustl.edu 37 2 70408540 70408540 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017880.1 -1 predicted p.C193Y 1.000 237 0% 110 35.5% 6 83.3% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL TIA1 7072 genome.wustl.edu 37 2 70463300 70463300 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022173.2 -1 reviewed p.G12S 1.000 249 0% 199 21.6% 17 29.4% probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD PCYOX1 51449 genome.wustl.edu 37 2 70504479 70504479 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016297.3 +1 validated p.M491I 1.000 113 0% 80 26.3% 24 33.3% possibly_damaging(0.452) tolerated(0.35) neutral(0.168) HMMPfam_Prenylcys_lyase MPHOSPH10 10199 genome.wustl.edu 37 2 71375179 71375179 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005791.1 +1 reviewed p.E536D 1.000 348 0% 221 15.8% 30 56.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Mpp10 ZNF638 27332 genome.wustl.edu 37 2 71654038 71654038 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014972.1 +1 reviewed p.L1680S 1.000 161 0% 122 14.8% 57 28% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DYSF 8291 genome.wustl.edu 37 2 71797059 71797059 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130987.1 +1 reviewed p.D992N 0.998 121 0% 117 23.1% 1 0% possibly_damaging(0.728) tolerated(0.07) deleterious(0.584) HMMSmart_DysFN DYSF 8291 genome.wustl.edu 37 2 71838661 71838661 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130987.1 +1 reviewed p.V1376M 0.965 49 0% 41 24.4% 2 0% possibly_damaging(0.7) tolerated(0.12) deleterious(0.512) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB DYSF 8291 genome.wustl.edu 37 2 71896784 71896784 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130987.1 +1 reviewed p.R1898C 1.000 336 0% 183 18.6% 15 6.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_C2,superfamily_C2_CaLB CYP26B1 56603 genome.wustl.edu 37 2 72359466 72359466 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019885.2 -1 reviewed p.V477I 1.000 74 0% 55 29.1% 1 0% possibly_damaging(0.948) tolerated(0.72) neutral(0.393) superfamily_Cytochrome_P450 CYP26B1 56603 genome.wustl.edu 37 2 72362546 72362546 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019885.2 -1 reviewed p.V144 0.990 33 0% 60 21.7% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 CYP26B1 56603 genome.wustl.edu 37 2 72371240 72371240 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019885.2 -1 reviewed p.R103C 1.000 39 0% 62 27.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_p450,superfamily_Cytochrome_P450 SFXN5 94097 genome.wustl.edu 37 2 73249692 73249692 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144579.2 -1 validated p.P97L 1.000 171 0% 82 18.3% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Mtc SFXN5 94097 genome.wustl.edu 37 2 73285676 73285676 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144579.2 -1 validated p.R51H 1.000 279 0% 146 20.5% 2 100% benign(0.356) deleterious(0.02) deleterious(0.496) HMMPfam_Mtc RAB11FIP5 26056 genome.wustl.edu 37 2 73315539 73315539 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015470.2 -1 validated p.Q403* 0.998 32 0% 46 26.1% 5 20% - - - NULL RAB11FIP5 26056 genome.wustl.edu 37 2 73316229 73316229 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015470.2 -1 validated p.A216T 0.999 316 0% 233 26.2% 6 0% benign(0.034) tolerated(0.57) neutral(0.008) NULL CCT7 10574 genome.wustl.edu 37 2 73479870 73479870 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006429.3 +1 reviewed p.A505T 1.000 110 0% 87 20.7% 801 38.3% benign(0.392) tolerated(0.13) neutral(0.378) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like FBXO41 150726 genome.wustl.edu 37 2 73486395 73486395 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080410.2 -1 validated p.V888I 1.000 186 0% 212 17.5% 1 0% possibly_damaging(0.68) tolerated(0.31) neutral(0.270) superfamily_RNI-like EGR4 1961 genome.wustl.edu 37 2 73518765 73518765 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001965.3 -1 validated p.T427 1.000 66 0% 59 44.1% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ALMS1 7840 genome.wustl.edu 37 2 73675997 73675997 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015120.4 +1 reviewed p.S780 0.002 88 0% 29 13.8% 0 - - - - NULL ALMS1 7840 genome.wustl.edu 37 2 73677067 73677067 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015120.4 +1 reviewed p.T1137I 0.000 155 0% 39 10.3% 0 - probably_damaging(0.98) deleterious(0.04) deleterious(0.773) NULL ALMS1 7840 genome.wustl.edu 37 2 73677977 73677977 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015120.4 +1 reviewed p.Q1440H 0.005 182 0% 49 22.4% 1 100% probably_damaging(0.992) tolerated(0.12) deleterious(0.708) NULL ALMS1 7840 genome.wustl.edu 37 2 73718347 73718347 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015120.4 +1 reviewed p.L3086 0.986 212 0% 176 23.3% 3 66.6% - - - NULL ALMS1 7840 genome.wustl.edu 37 2 73799771 73799771 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015120.4 +1 reviewed p.E3588D 0.025 129 0% 47 14.9% 7 14.2% probably_damaging(0.984) deleterious(0.02) deleterious(0.814) NULL NAT8 9027 genome.wustl.edu 37 2 73868277 73868277 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003960.3 -1 reviewed p.T160I 0.998 133 0% 82 26.8% 1 100% possibly_damaging(0.848) tolerated(0.06) deleterious(0.648) HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase TPRKB 51002 genome.wustl.edu 37 2 73961663 73961663 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016058.2 -1 validated p.E12* 0.995 356 0% 170 15.9% 88 37.5% - - - NULL DUSP11 8446 genome.wustl.edu 37 2 74002127 74002127 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003584.2 -1 reviewed p.L121 0.980 363 0% 326 12.9% 17 17.6% - - - HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II TET3 200424 genome.wustl.edu 37 2 74327611 74327611 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144993.1 +1 provisional p.S1097 0.571 139 0% 156 22.4% 2 100% - - - NULL TET3 200424 genome.wustl.edu 37 2 74328434 74328434 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144993.1 +1 provisional p.R1372W 0.910 31 0% 44 18.2% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL SLC4A5 57835 genome.wustl.edu 37 2 74481817 74481817 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021196.3 -1 reviewed p.L348M 0.945 275 0% 298 22.1% 1 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein SLC4A5 57835 genome.wustl.edu 37 2 74489356 74489356 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021196.3 -1 reviewed p.R240H 0.999 57 0% 41 26.8% 0 - possibly_damaging(0.909) tolerated(0.31) neutral(0.389) HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein DCTN1 1639 genome.wustl.edu 37 2 74589839 74589839 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004082.3 -1 reviewed p.A1183T 0.992 110 0% 78 26.9% 205 40.4% benign(0.31) tolerated(0.34) neutral(0.119) NULL DCTN1 1639 genome.wustl.edu 37 2 74590120 74590120 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004082.3 -1 reviewed e29+1 1.000 361 0% 182 23.1% 4 100% - - - - DCTN1 1639 genome.wustl.edu 37 2 74597122 74597122 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004082.3 -1 reviewed p.V454 1.000 367 0% 266 23.3% 53 47.1% - - - NULL DCTN1 1639 genome.wustl.edu 37 2 74597618 74597618 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004082.3 -1 reviewed p.A368T 1.000 188 0% 142 19.7% 26 38.4% possibly_damaging(0.909) tolerated(0.67) neutral(0.364) superfamily_Spectrin repeat DCTN1 1639 genome.wustl.edu 37 2 74604825 74604825 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004082.3 -1 reviewed p.T103I 1.000 547 0% 499 19.2% 33 27.2% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) superfamily_Cap-Gly domain RTKN 6242 genome.wustl.edu 37 2 74653404 74653404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015055.1 -1 reviewed p.G553D 0.972 76 0% 98 19.4% 93 38.7% benign(0.086) tolerated(0.2) neutral(0.056) NULL RTKN 6242 genome.wustl.edu 37 2 74659788 74659788 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015055.1 -1 reviewed p.T39 0.765 35 0% 60 25% 37 43.2% - - - HMMSmart_SM00742 DQX1 165545 genome.wustl.edu 37 2 74746802 74746802 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133637.2 -1 validated p.R563W 0.907 417 0% 408 18.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL AUP1 550 genome.wustl.edu 37 2 74754243 74754243 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000412627 -1 known p.F361 1.000 94 0% 94 29.8% 26 42.3% - - - NULL AUP1 550 genome.wustl.edu 37 2 74756061 74756061 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181575.3 -1 reviewed p.P114H 1.000 78 0% 98 17.3% 256 32.8% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMSmart_PlsC C2orf65 130951 genome.wustl.edu 37 2 74803653 74803653 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138804.3 -1 predicted p.G288* 1.000 270 0% 104 15.4% 3 0% - - - NULL HK2 3099 genome.wustl.edu 37 2 75109363 75109363 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000189.4 +1 reviewed p.D612 0.420 78 0% 81 29.6% 15 26.6% - - - HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,superfamily_SSF53067 FAM176A 84141 genome.wustl.edu 37 2 75720435 75720435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135032.1 -1 validated p.R129H 1.000 18 0% 24 37.5% 41 29.2% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL MRPL19 9801 genome.wustl.edu 37 2 75879719 75879719 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014763.3 +1 reviewed p.C137 1.000 305 0% 286 22% 47 59.5% - - - NULL GCFC2 6936 genome.wustl.edu 37 2 75916214 75916214 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003203.4 -1 validated p.C493G 1.000 247 0% 132 25.8% 6 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_GCFC GCFC2 6936 genome.wustl.edu 37 2 75919198 75919198 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003203.4 -1 validated p.S350Y 1.000 452 0% 198 19.2% 10 0% possibly_damaging(0.8) deleterious(0.04) deleterious(0.650) HMMPfam_GCFC GCFC2 6936 genome.wustl.edu 37 2 75921548 75921548 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003203.4 -1 validated p.T280I 0.990 323 0.6% 185 21.1% 2 0% probably_damaging(0.958) tolerated(0.08) deleterious(0.702) HMMPfam_GCFC LRRTM4 80059 genome.wustl.edu 37 2 77745641 77745641 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134745.1 -1 validated p.A452S 1.000 219 0% 42 26.2% 0 - benign(0.003) tolerated(0.2) neutral(0.049) NULL LRRTM1 347730 genome.wustl.edu 37 2 80530073 80530073 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178839.4 -1 validated p.R291H 1.000 87 0% 104 12.5% 15 0% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) superfamily_SSF52058 CTNNA2 1496 genome.wustl.edu 37 2 80646641 80646641 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004389.3 +1 validated p.L402P 1.000 356 0% 95 18.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin CTNNA2 1496 genome.wustl.edu 37 2 80808840 80808840 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004389.3 +1 validated p.E635* 1.000 187 0% 61 24.6% 0 - - - - HMMPfam_Vinculin SUCLG1 8802 genome.wustl.edu 37 2 84658704 84658704 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003849.3 -1 reviewed p.G251 0.996 404 0% 146 13.7% 180 24.4% - - - HMMPfam_Ligase_CoA,superfamily_CoA_ligase DNAH6 1768 genome.wustl.edu 37 2 84775492 84775492 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001370.1 +1 validated p.T423A 0.998 395 0% 167 21.6% 1 0% possibly_damaging(0.88) tolerated(0.35) neutral(0.364) NULL DNAH6 1768 genome.wustl.edu 37 2 84811292 84811292 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001370.1 +1 validated p.S800I 0.450 396 0% 294 19.7% 0 - benign(0.074) tolerated(0.39) neutral(0.021) NULL DNAH6 1768 genome.wustl.edu 37 2 84851696 84851696 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001370.1 +1 validated p.G1435 1.000 311 0.3% 76 19.7% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH6 1768 genome.wustl.edu 37 2 85012821 85012821 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001370.1 +1 validated p.L3681I 1.000 180 0% 81 22.2% 3 33.3% probably_damaging(0.999) tolerated(0.13) deleterious(0.743) HMMPfam_Dynein_heavy C2orf89 129293 genome.wustl.edu 37 2 85097573 85097573 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080824.1 -1 predicted p.A149T 0.995 163 0.6% 109 11% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL TCF7L1 83439 genome.wustl.edu 37 2 85536467 85536467 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031283.1 +1 provisional p.S550F 1.000 25 0% 24 16.7% 17 29.4% possibly_damaging(0.924) deleterious(0.01) deleterious(0.778) NULL RETSAT 54884 genome.wustl.edu 37 2 85576596 85576596 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017750.3 -1 validated p.T303N 0.999 181 0% 123 20.3% 17 23.5% possibly_damaging(0.81) deleterious(0.01) deleterious(0.711) superfamily_FAD/NAD(P)-binding domain MAT2A 4144 genome.wustl.edu 37 2 85768278 85768278 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005911.4 +1 validated p.A55D 1.000 316 0% 494 13.2% 87 29.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_S-AdoMet_synt_N,superfamily_S-adenosylmethionine synthetase GGCX 2677 genome.wustl.edu 37 2 85777153 85777153 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000821.4 -1 reviewed p.P727 0.939 178 0% 156 23.1% 15 40% - - - NULL VAMP8 8673 genome.wustl.edu 37 2 85808722 85808722 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003761.3 +1 validated p.S62 0.144 473 0% 510 23.1% 587 31.5% - - - HMMPfam_Synaptobrevin RNF181 51255 genome.wustl.edu 37 2 85823694 85823694 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016494.3 +1 validated p.D47N 1.000 239 0% 267 23.2% 372 38.7% probably_damaging(0.965) deleterious(0.01) deleterious(0.812) NULL RNF181 51255 genome.wustl.edu 37 2 85824144 85824144 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456023 +1 known p.R78K 0.000 436 0% 429 13.3% 12 8.3% unknown(0) tolerated(0.29) - NULL TMEM150A 129303 genome.wustl.edu 37 2 85826209 85826209 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031738.2 -1 validated p.A269V 1.000 66 0% 69 18.8% 20 55% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL TMEM150A 129303 genome.wustl.edu 37 2 85828166 85828166 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031738.2 -1 validated p.L60 1.000 77 0% 114 24.6% 23 56.5% - - - HMMPfam_Frag1 POLR1A 25885 genome.wustl.edu 37 2 86317035 86317035 + Missense_Mutation SNP G G A rs187487275 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409024 -1 known p.P32L 0.620 426 0% 208 17.3% 4 25% unknown(0) - - NULL PTCD3 55037 genome.wustl.edu 37 2 86360517 86360517 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017952.5 +1 validated p.D501Y 1.000 657 0.3% 222 25.7% 31 32.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL IMMT 10989 genome.wustl.edu 37 2 86389120 86389120 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419070 -1 known p.C146* 0.991 208 0.5% 90 22.2% 54 22.2% probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Mitofilin IMMT 10989 genome.wustl.edu 37 2 86397897 86397897 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006839.2 -1 validated p.E210D 0.953 433 0% 193 27.5% 44 43.1% benign(0.001) tolerated(0.34) neutral(0.023) HMMPfam_Mitofilin KDM3A 55818 genome.wustl.edu 37 2 86693925 86693925 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018433.5 +1 reviewed p.R480* 0.097 89 0% 42 14.3% 4 0% - - - NULL KDM3A 55818 genome.wustl.edu 37 2 86711135 86711135 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018433.5 +1 reviewed p.H983P 0.998 332 0% 115 13.9% 12 16.6% possibly_damaging(0.811) deleterious(0.04) deleterious(0.654) superfamily_Clavaminate synthase-like RNF103 7844 genome.wustl.edu 37 2 86831124 86831124 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005667.2 -1 reviewed p.L634 0.997 521 0.2% 254 28% 39 38.4% - - - HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 RNF103 7844 genome.wustl.edu 37 2 86832346 86832346 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005667.2 -1 reviewed p.E226D 0.993 233 0% 143 23.8% 14 57.1% benign(0) tolerated(0.51) neutral(0.009) NULL KRCC1 51315 genome.wustl.edu 37 2 88327756 88327756 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016618.1 -1 provisional p.D109 0.604 341 0% 173 23.7% 41 39% - - - NULL SMYD1 150572 genome.wustl.edu 37 2 88405917 88405917 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198274.2 +1 provisional p.R352Q 1.000 242 0% 128 21.9% 0 - probably_damaging(1) tolerated(0.05) deleterious(0.845) NULL EIF2AK3 9451 genome.wustl.edu 37 2 88882968 88882968 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004836.5 -1 reviewed p.K581N 0.841 623 0% 134 20.9% 5 40% possibly_damaging(0.923) tolerated(0.46) neutral(0.385) superfamily_Protein kinase-like (PK-like) IGKV3-11 28914 genome.wustl.edu 37 2 89327145 89327145 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000483158 -1 known p.L13I 0.604 613 0.2% 332 10.5% 412 0% benign(0.041) tolerated(0.15) neutral(0.243) NULL TEKT4 150483 genome.wustl.edu 37 2 95540702 95540702 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144705.2 +1 provisional p.L299 0.993 70 0% 61 19.7% 1 0% - - - HMMPfam_Tektin MRPS5 64969 genome.wustl.edu 37 2 95773964 95773964 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031902.3 -1 reviewed p.W198* 1.000 493 0% 355 23.7% 56 1.7% - - - NULL ZNF514 84874 genome.wustl.edu 37 2 95815619 95815619 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032788.1 -1 provisional p.C204Y 0.075 236 0% 208 15.4% 1 0% benign(0) tolerated(1) - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF514 84874 genome.wustl.edu 37 2 95815713 95815713 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032788.1 -1 provisional p.L173F 0.000 230 0% 196 25.5% 5 80% benign(0) tolerated(0.69) neutral(0.002) NULL LOC344065 344065 genome.wustl.edu 37 2 95880756 95880756 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_292895.7 +1 model p.R341Q 1.000 97 0% 76 26.3% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TRIM43 129868 genome.wustl.edu 37 2 96262004 96262004 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138800.1 +1 provisional p.P188T 0.002 653 0% 323 21.1% 0 - possibly_damaging(0.437) tolerated(0.56) neutral(0.149) NULL GPAT2 150763 genome.wustl.edu 37 2 96690588 96690588 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207328.2 -1 validated p.S454N 0.996 68 0% 66 13.6% 3 0% benign(0.212) deleterious(0.03) neutral(0.385) NULL SNRNP200 23020 genome.wustl.edu 37 2 96943290 96943290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014014.3 -1 reviewed p.R1973H 1.000 150 0% 106 20.8% 246 44.7% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) HMMPfam_Sec63,HMMSmart_SM00611 SNRNP200 23020 genome.wustl.edu 37 2 96956439 96956439 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014014.3 -1 reviewed p.A846S 1.000 327 0% 138 18.8% 39 38.4% benign(0.02) tolerated(0.05) neutral(0.346) HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases SNRNP200 23020 genome.wustl.edu 37 2 96959180 96959180 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014014.3 -1 reviewed p.R637Q 1.000 133 0% 64 23.4% 29 34.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases NCAPH 23397 genome.wustl.edu 37 2 97019071 97019071 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015341.3 +1 reviewed p.R313H 1.000 322 0% 184 14.7% 5 0% probably_damaging(0.984) tolerated(0.16) deleterious(0.490) HMMPfam_Barren NCAPH 23397 genome.wustl.edu 37 2 97019135 97019135 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015341.3 +1 reviewed p.E334D 1.000 373 0% 161 23% 10 0% probably_damaging(0.996) tolerated(0.46) deleterious(0.474) HMMPfam_Barren NCAPH 23397 genome.wustl.edu 37 2 97020046 97020046 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015341.3 +1 reviewed p.N376 0.074 178 0% 128 18.8% 7 71.4% - - - HMMPfam_Barren ARID5A 10865 genome.wustl.edu 37 2 97217534 97217534 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212481.1 +1 validated p.K423N 0.667 54 0% 54 22.2% 46 21.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FER1L5 90342 genome.wustl.edu 37 2 97335882 97335882 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113382.1 +1 provisional p.G458 0.324 452 0% 172 16.9% 0 - - - - NULL LMAN2L 81562 genome.wustl.edu 37 2 97377498 97377498 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142292.1 -1 validated p.D238Y 1.000 120 0% 48 25% 20 55% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl LMAN2L 81562 genome.wustl.edu 37 2 97405695 97405695 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142292.1 -1 validated p.L28P 1.000 86 0% 58 12.1% 3 100% benign(0.213) deleterious(0.01) neutral(0.427) NULL CNNM4 26504 genome.wustl.edu 37 2 97462764 97462764 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020184.3 +1 reviewed p.A473V 1.000 74 0% 89 25.8% 4 25% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_CBS CNNM3 26505 genome.wustl.edu 37 2 97494792 97494792 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017623.4 +1 validated p.Q660H 0.998 129 0% 136 22.1% 20 45% possibly_damaging(0.691) deleterious(0.02) deleterious(0.631) NULL SEMA4C 54910 genome.wustl.edu 37 2 97529704 97529704 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017789.4 -1 validated p.G430E 0.989 52 0% 67 28.4% 29 51.7% possibly_damaging(0.768) deleterious(0.01) deleterious(0.691) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema SEMA4C 54910 genome.wustl.edu 37 2 97530525 97530525 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017789.4 -1 validated p.Y293 1.000 58 0% 84 23.8% 20 40% - - - HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema SEMA4C 54910 genome.wustl.edu 37 2 97530615 97530615 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017789.4 -1 validated p.G263 0.006 45 0% 57 17.5% 23 30.4% - - - HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema FAM178B 51252 genome.wustl.edu 37 2 97544229 97544229 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122646.2 -1 validated p.A561V 0.998 49 0% 77 28.6% 2 0% benign(0.001) tolerated(0.16) neutral(0.059) NULL ANKRD36B 57730 genome.wustl.edu 37 2 98195400 98195400 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000258459 -1 known p.E222* 0.461 344 0% 191 16.8% 1 0% - - - superfamily_Ankyrin repeat ZAP70 7535 genome.wustl.edu 37 2 98354267 98354267 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079.3 +1 reviewed p.C510 1.000 85 0% 107 16.8% 51 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) TMEM131 23505 genome.wustl.edu 37 2 98413430 98413430 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015348.1 -1 validated p.D964Y 1.000 376 0% 268 23.9% 10 10% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL TMEM131 23505 genome.wustl.edu 37 2 98413866 98413866 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015348.1 -1 validated p.P944 0.016 279 0% 250 20.4% 9 77.7% - - - NULL TMEM131 23505 genome.wustl.edu 37 2 98422097 98422097 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015348.1 -1 validated p.R709* 1.000 272 0% 233 15.9% 3 33.3% - - - NULL TMEM131 23505 genome.wustl.edu 37 2 98430736 98430736 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015348.1 -1 validated p.D470N 1.000 256 0% 176 21% 7 14.2% benign(0.168) tolerated(1) neutral(0.015) NULL VWA3B 200403 genome.wustl.edu 37 2 98828478 98828478 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144992.4 +1 provisional p.G608V 1.000 207 0% 118 24.6% 5 80% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like CNGA3 1261 genome.wustl.edu 37 2 99012748 99012748 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001298.2 +1 reviewed p.P372L 0.998 64 0% 34 26.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_SSF81324 CNGA3 1261 genome.wustl.edu 37 2 99013139 99013139 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001298.2 +1 reviewed p.V502 1.000 152 0% 74 16.2% 0 - - - - HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding INPP4A 3631 genome.wustl.edu 37 2 99136599 99136599 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134224.1 +1 reviewed p.L30 1.000 28 0% 21 33.3% 4 25% - - - NULL INPP4A 3631 genome.wustl.edu 37 2 99198049 99198049 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001566.2 +1 reviewed p.R899W 1.000 261 0.4% 299 20.7% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MRPL30 51263 genome.wustl.edu 37 2 99811387 99811387 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409145 +1 known p.*102 0.022 110 0% 65 21.5% 0 - - - - NULL LYG2 254773 genome.wustl.edu 37 2 99858877 99858877 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175735.3 -1 reviewed p.V197I 0.001 207 0% 83 24.1% 0 - possibly_damaging(0.882) deleterious(0.03) deleterious(0.709) superfamily_SSF53955 EIF5B 9669 genome.wustl.edu 37 2 99993089 99993089 + Missense_Mutation SNP G G A rs149537328 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015904.3 +1 reviewed p.R611Q 1.000 420 0% 235 25.1% 73 35.6% benign(0.04) tolerated(0.28) neutral(0.034) NULL EIF5B 9669 genome.wustl.edu 37 2 100006751 100006751 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015904.3 +1 reviewed p.A825T 1.000 421 0% 273 20.9% 59 42.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases REV1 51455 genome.wustl.edu 37 2 100055196 100055196 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016316.2 -1 reviewed p.H360 1.000 302 0.3% 118 12.7% 9 22.2% - - - NULL CHST10 9486 genome.wustl.edu 37 2 101009888 101009888 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004854.3 -1 validated p.A297D 1.000 342 0% 290 19.3% 5 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Sulfotransfer_2 LOC100288057 100288057 genome.wustl.edu 37 2 101014497 101014497 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342241.1 +1 model p.E304* 1.000 328 0% 208 22.1% 2 0% - - - NULL PDCL3 79031 genome.wustl.edu 37 2 101183040 101183040 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024065.4 +1 validated p.E28* 1.000 154 0% 164 23.8% 37 18.9% - - - HMMPfam_Phosducin,superfamily_Thiordxn-like_fd NPAS2 4862 genome.wustl.edu 37 2 101591324 101591324 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002518.3 +1 reviewed p.S400 0.000 98 0% 89 23.6% 1 100% - - - NULL RFX8 731220 genome.wustl.edu 37 2 102014128 102014128 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145664.1 -1 validated p.P435H 0.988 736 0% 552 22.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MAP4K4 9448 genome.wustl.edu 37 2 102504264 102504264 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145686.2 +1 reviewed p.A1202T 1.000 492 0% 207 20.8% 87 24.1% unknown(0) deleterious(0.04) - HMMPfam_CNH,HMMSmart_SM00036 IL1R2 7850 genome.wustl.edu 37 2 102626214 102626214 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004633.3 +1 reviewed p.M86I 0.000 132 0% 66 27.3% 11 54.5% benign(0.001) tolerated(0.88) - HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 IL1RL2 8808 genome.wustl.edu 37 2 102842396 102842396 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003854.2 +1 reviewed p.A344T 0.000 445 0% 260 15.8% 2 100% benign(0.418) tolerated(1) neutral(0.136) NULL IL1RL2 8808 genome.wustl.edu 37 2 102849540 102849540 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003854.2 +1 reviewed p.G418V 1.000 323 0% 206 10.2% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR IL18R1 8809 genome.wustl.edu 37 2 102984394 102984394 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003855.2 +1 reviewed p.W56* 0.150 411 0% 237 21.1% 0 - - - - HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 SLC9A2 6549 genome.wustl.edu 37 2 103321059 103321059 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003048.3 +1 validated p.K634N 1.000 234 0% 176 23.9% 0 - probably_damaging(0.975) tolerated(0.39) neutral(0.433) NULL TMEM182 130827 genome.wustl.edu 37 2 103431357 103431357 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144632.3 +1 validated p.G207V 0.998 463 0.6% 227 27.3% 4 75% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL GPR45 11250 genome.wustl.edu 37 2 105859405 105859405 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007227.3 +1 reviewed p.V364M 1.000 51 0% 73 19.2% 0 - probably_damaging(0.957) deleterious(0.03) deleterious(0.765) NULL TGFBRAP1 9392 genome.wustl.edu 37 2 105889460 105889460 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142621.1 -1 validated p.Y608 0.998 66 0% 69 18.8% 7 42.8% - - - NULL TGFBRAP1 9392 genome.wustl.edu 37 2 105924376 105924376 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142621.1 -1 validated p.P128H 0.999 59 0% 63 23.8% 6 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C2orf49 79074 genome.wustl.edu 37 2 105956175 105956175 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024093.1 +1 provisional p.E79K 0.998 350 0% 296 24% 19 36.8% possibly_damaging(0.646) tolerated(0.62) neutral(0.231) NULL UXS1 80146 genome.wustl.edu 37 2 106761713 106761713 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025076.3 -1 validated p.E130D 1.000 142 0% 72 26.4% 23 39.1% benign(0.002) tolerated(0.22) neutral(0.042) HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains RGPD3 653489 genome.wustl.edu 37 2 107040421 107040421 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144013.1 -1 validated p.Y1334* 1.000 321 0% 98 10.2% 4 0% - - - superfamily_SSF50729 SLC5A7 60482 genome.wustl.edu 37 2 108604648 108604648 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021815.2 +1 provisional p.V13M 0.987 310 0% 421 20.4% 0 - benign(0.011) deleterious(0.03) neutral(0.365) NULL SLC5A7 60482 genome.wustl.edu 37 2 108604723 108604723 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021815.2 +1 provisional p.R38C 1.000 221 0% 319 14.7% 0 - possibly_damaging(0.904) deleterious(0.05) deleterious(0.704) NULL SLC5A7 60482 genome.wustl.edu 37 2 108622637 108622637 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021815.2 +1 provisional p.G292R 1.000 98 0% 92 22.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SSF SULT1C4 27233 genome.wustl.edu 37 2 109002649 109002649 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006588.2 +1 reviewed p.N206I 1.000 114 0% 91 22% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases GCC2 9648 genome.wustl.edu 37 2 109099550 109099550 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181453.3 +1 reviewed p.E1126D 0.990 264 0% 100 22% 5 40% possibly_damaging(0.672) - - NULL CCDC138 165055 genome.wustl.edu 37 2 109492608 109492608 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144978.1 +1 provisional p.T633A 0.965 301 0% 119 24.4% 11 36.3% benign(0.005) tolerated(0.39) neutral(0.016) NULL SH3RF3 344558 genome.wustl.edu 37 2 110065767 110065767 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000309415 +1 known p.P657L 0.689 122 0% 66 10.6% 4 75% benign(0.059) tolerated(0.07) neutral(0.323) NULL SH3RF3 344558 genome.wustl.edu 37 2 110259198 110259198 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000309415 +1 known p.R867W 0.997 53 0% 50 30% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 SOWAHC 65124 genome.wustl.edu 37 2 110373589 110373589 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023016.3 +1 validated p.P508H 0.002 58 0% 112 21.4% 2 50% benign(0.312) tolerated(0.13) neutral(0.350) NULL NPHP1 4867 genome.wustl.edu 37 2 110922126 110922126 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000272.3 -1 reviewed p.I304V 0.000 193 0% 70 12.9% 0 - benign(0) tolerated(0.37) neutral(0.019) NULL BUB1 699 genome.wustl.edu 37 2 111414656 111414656 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004336.3 -1 reviewed p.T552I 1.000 486 0% 159 22% 23 43.4% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) NULL ANAPC1 64682 genome.wustl.edu 37 2 112541937 112541937 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022662.2 -1 validated p.A1653V 1.000 414 0% 285 17.9% 5 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL FBLN7 129804 genome.wustl.edu 37 2 112917274 112917274 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153214.2 +1 validated p.L33I 1.000 40 0% 51 27.5% 0 - benign(0.081) tolerated(0.06) neutral(0.329) NULL ZC3H6 376940 genome.wustl.edu 37 2 113082183 113082183 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198581.2 +1 validated p.D599N 1.000 111 0% 59 23.7% 0 - possibly_damaging(0.767) deleterious(0) deleterious(0.729) NULL ZC3H6 376940 genome.wustl.edu 37 2 113088835 113088835 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198581.2 +1 validated p.R780 1.000 157 0% 92 30.4% 1 100% - - - NULL RGPD8 727851 genome.wustl.edu 37 2 113147667 113147667 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000302558 -1 known p.R952M 0.005 1014 0% 366 27% 0 - benign(0) deleterious(0.02) neutral(0.383) NULL TTL 150465 genome.wustl.edu 37 2 113251761 113251761 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153712.4 +1 validated p.W93* 1.000 105 0% 109 23.9% 5 40% - - - HMMPfam_TTL TTL 150465 genome.wustl.edu 37 2 113260562 113260562 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153712.4 +1 validated p.P227T 1.000 367 0% 291 14.4% 3 33.3% possibly_damaging(0.829) tolerated(0.12) deleterious(0.575) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like POLR1B 84172 genome.wustl.edu 37 2 113304604 113304604 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019014.4 +1 validated p.E65K 1.000 315 0% 305 23.6% 5 20% probably_damaging(0.979) tolerated(0.08) deleterious(0.722) HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase POLR1B 84172 genome.wustl.edu 37 2 113332502 113332502 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019014.4 +1 validated p.C868 1.000 289 0% 96 30.2% 16 62.5% - - - HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase IL1B 3553 genome.wustl.edu 37 2 113590270 113590270 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000576.2 -1 reviewed p.L145 0.841 488 0% 361 18.6% 8 0% - - - HMMPfam_IL1,HMMSmart_IL1,superfamily_Cytok_IL1_like PAX8 7849 genome.wustl.edu 37 2 114002147 114002147 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003466.3 -1 reviewed p.K82N 1.000 145 0% 103 20.4% 191 44.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like RABL2A 11159 genome.wustl.edu 37 2 114391739 114391739 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007082.3 +1 reviewed p.Q49H 1.000 392 0% 388 17.8% 13 15.3% probably_damaging(0.982) tolerated(0.29) neutral(0.456) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases LOC645529 645529 genome.wustl.edu 37 2 114425539 114425539 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001716670.2 -1 model p.S195R 1.000 109 0% 95 21.1% 0 - - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases SLC35F5 80255 genome.wustl.edu 37 2 114483076 114483076 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025181.2 -1 provisional p.G377C 1.000 271 0% 124 25% 30 6.6% possibly_damaging(0.869) tolerated(0.07) deleterious(0.656) NULL SLC35F5 80255 genome.wustl.edu 37 2 114508022 114508022 + Missense_Mutation SNP G G A rs184692931 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025181.2 -1 provisional p.R133C 1.000 200 0% 221 22.2% 15 73.3% benign(0.042) deleterious(0.01) neutral(0.408) superfamily_Multidrug resistance efflux transporter EmrE DPP10 57628 genome.wustl.edu 37 2 116497362 116497362 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020868.3 +1 validated p.E249K 1.000 318 0% 65 24.6% 0 - probably_damaging(0.954) tolerated(0.83) neutral(0.398) HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain DPP10 57628 genome.wustl.edu 37 2 116598326 116598326 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020868.3 +1 validated p.T728I 1.000 410 0% 368 19.8% 0 - possibly_damaging(0.911) deleterious(0.01) deleterious(0.768) HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases INSIG2 51141 genome.wustl.edu 37 2 118854204 118854204 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016133.2 +1 reviewed p.Q24H 0.999 369 0.3% 241 24.9% 5 20% benign(0) deleterious(0.05) neutral(0.345) NULL INSIG2 51141 genome.wustl.edu 37 2 118864368 118864368 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016133.2 +1 reviewed p.I142S 1.000 694 0% 246 24% 19 26.3% benign(0.071) deleterious(0.01) neutral(0.411) HMMPfam_INSIG C2orf76 130355 genome.wustl.edu 37 2 120097437 120097437 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017927.2 -1 predicted p.Q33H 1.000 300 0% 174 13.8% 12 8.3% benign(0.28) tolerated(0.17) neutral(0.145) HMMPfam_DUF2340 SCTR 6344 genome.wustl.edu 37 2 120204400 120204400 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002980.2 -1 reviewed p.A359T 0.998 190 0.5% 100 19% 1 0% benign(0.155) deleterious(0.02) neutral(0.397) HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like ENSG00000163075 0 genome.wustl.edu 37 2 120404582 120404582 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000443972 +1 known p.S317Y 0.000 275 0% 229 10.9% 1 0% - - - NULL PTPN4 5775 genome.wustl.edu 37 2 120690015 120690015 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002830.2 +1 reviewed p.P362 0.816 168 0% 108 23.1% 1 100% - - - HMMPfam_FA,superfamily_SSF50729 RALB 5899 genome.wustl.edu 37 2 121043570 121043570 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002881.2 +1 reviewed p.R79* 0.997 325 0% 136 22.8% 21 4.7% - - - HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases CLASP1 23332 genome.wustl.edu 37 2 122120748 122120748 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015282.2 -1 validated p.E1402D 1.000 316 0.3% 340 20.6% 8 25% probably_damaging(0.995) deleterious(0) deleterious(0.902) superfamily_ARM repeat CLASP1 23332 genome.wustl.edu 37 2 122159131 122159131 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015282.2 -1 validated p.L952I 1.000 275 0% 113 18.6% 7 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_ARM repeat CNTNAP5 129684 genome.wustl.edu 37 2 125284881 125284881 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130773.2 +1 reviewed p.T498 1.000 439 0% 130 20.8% 0 - - - - HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 CNTNAP5 129684 genome.wustl.edu 37 2 125521304 125521304 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130773.2 +1 reviewed p.V763I 1.000 393 0% 97 10.3% 0 - benign(0.043) tolerated(0.25) neutral(0.040) superfamily_ConA_like_lec_gl CNTNAP5 129684 genome.wustl.edu 37 2 125521656 125521656 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130773.2 +1 reviewed p.T821N 1.000 470 0% 128 16.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 CNTNAP5 129684 genome.wustl.edu 37 2 125669091 125669091 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130773.2 +1 reviewed p.R1234* 0.924 334 0.3% 48 27.1% 0 - - - - NULL BIN1 274 genome.wustl.edu 37 2 127827579 127827579 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139343.1 -1 reviewed p.D135N 1.000 117 0% 122 18.9% 135 37.7% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_BAR,HMMSmart_SM00721 ERCC3 2071 genome.wustl.edu 37 2 128038130 128038130 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000122.1 -1 reviewed p.D474Y 1.000 118 0% 51 27.5% 25 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases ERCC3 2071 genome.wustl.edu 37 2 128044391 128044391 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000122.1 -1 reviewed p.Y410 1.000 137 0% 89 21.3% 35 28.5% - - - HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases ERCC3 2071 genome.wustl.edu 37 2 128051107 128051107 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000122.1 -1 reviewed p.T72 0.944 119 0% 154 24% 20 40% - - - NULL MAP3K2 10746 genome.wustl.edu 37 2 128096605 128096605 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006609.3 -1 reviewed p.S9L 1.000 361 0% 194 23.2% 3 66.6% benign(0.072) tolerated(0.12) neutral(0.266) NULL MYO7B 4648 genome.wustl.edu 37 2 128321787 128321787 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080527.1 +1 provisional p.G26 0.945 223 0% 104 11.5% 0 - - - - NULL MYO7B 4648 genome.wustl.edu 37 2 128390929 128390929 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080527.1 +1 provisional p.D1808 1.000 56 0% 63 14.3% 0 - - - - HMMSmart_SM00295 MYO7B 4648 genome.wustl.edu 37 2 128394135 128394135 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080527.1 +1 provisional p.S2021P 0.671 124 0% 142 22.5% 0 - probably_damaging(0.996) tolerated(0.13) deleterious(0.714) NULL WDR33 55339 genome.wustl.edu 37 2 128466385 128466385 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018383.3 -1 reviewed p.R1216L 1.000 175 0% 214 24.3% 39 58.9% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL WDR33 55339 genome.wustl.edu 37 2 128467397 128467397 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018383.3 -1 reviewed p.G1114 0.970 63 0% 72 15.3% 15 33.3% - - - NULL WDR33 55339 genome.wustl.edu 37 2 128471170 128471170 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018383.3 -1 reviewed p.R1099C 1.000 69 0% 59 28.8% 24 54.1% probably_damaging(1) tolerated(0.11) deleterious(0.772) NULL WDR33 55339 genome.wustl.edu 37 2 128477378 128477378 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018383.3 -1 reviewed p.Q741* 1.000 86 0% 67 17.9% 27 7.4% - - - HMMPfam_Collagen SAP130 79595 genome.wustl.edu 37 2 128699597 128699597 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024545.3 -1 validated p.R1044* 1.000 565 0% 202 17.8% 29 24.1% - - - NULL SAP130 79595 genome.wustl.edu 37 2 128712587 128712587 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024545.3 -1 validated p.P790S 1.000 420 0% 163 17.8% 17 52.9% unknown(0) deleterious(0.03) - NULL SAP130 79595 genome.wustl.edu 37 2 128747416 128747416 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024545.3 -1 validated p.A527V 1.000 201 0% 118 19.5% 15 20% possibly_damaging(0.903) deleterious(0.03) deleterious(0.722) NULL UGGT1 56886 genome.wustl.edu 37 2 128935439 128935439 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020120.3 +1 validated p.L1220M 0.994 694 0% 236 20.3% 17 29.4% possibly_damaging(0.934) deleterious(0.01) deleterious(0.786) NULL HS6ST1 9394 genome.wustl.edu 37 2 129026165 129026165 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004807.2 -1 reviewed p.P269 0.994 70 0% 64 9.4% 41 43.9% - - - HMMPfam_HS6ST RAB6C 84084 genome.wustl.edu 37 2 130738182 130738182 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032144.2 +1 validated p.Q165R 1.000 1135 0% 1183 16.9% 1 0% possibly_damaging(0.679) tolerated(0.11) deleterious(0.514) HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 POTEF 728378 genome.wustl.edu 37 2 130832969 130832969 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099771.2 -1 validated p.K692N 0.002 380 0% 256 20.3% 0 - possibly_damaging(0.951) deleterious(0) deleterious(0.839) NULL POTEF 728378 genome.wustl.edu 37 2 130859740 130859740 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099771.2 -1 validated p.K380N 0.013 898 0% 445 15.5% 0 - possibly_damaging(0.819) deleterious(0) deleterious(0.754) NULL POTEF 728378 genome.wustl.edu 37 2 130878082 130878082 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099771.2 -1 validated p.V3I 0.033 328 0% 445 16.4% 0 - benign(0.01) deleterious(0.01) neutral(0.406) NULL SMPD4 55627 genome.wustl.edu 37 2 130910182 130910182 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439886 -1 known p.S724Y 0.996 58 0% 31 22.6% 80 45% - - - NULL TUBA3E 112714 genome.wustl.edu 37 2 130951988 130951988 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207312.2 -1 validated p.G143S 1.000 242 0% 269 11.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin_FtsZ PTPN18 26469 genome.wustl.edu 37 2 131117066 131117066 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014369.3 +1 reviewed e4+1 1.000 264 0% 336 23.2% 0 - - - - - LOC653269 653269 genome.wustl.edu 37 2 131221193 131221193 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_928585.2 -1 model p.A808 0.999 93 0% 89 16.9% 455 0.2% - - - HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,superfamily_Actin-like ATPase domain GPR148 344561 genome.wustl.edu 37 2 131487605 131487605 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207364.2 +1 validated p.S294Y 0.001 64 0% 98 12.2% 0 - benign(0.082) tolerated(0.08) neutral(0.306) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like FAM123C 205147 genome.wustl.edu 37 2 131520582 131520582 + Missense_Mutation SNP G G A rs190739558 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105193.1 +1 validated p.V313M 0.835 26 0% 28 28.6% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_WTX FAM168B 130074 genome.wustl.edu 37 2 131812989 131812989 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009993.2 -1 validated p.A111S 1.000 319 0% 214 19.6% 34 29.4% possibly_damaging(0.936) deleterious(0) deleterious(0.826) NULL POTEE 445582 genome.wustl.edu 37 2 132020988 132020988 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083538.1 +1 validated p.E654* 0.198 172 0% 129 18.6% 0 - - - - NULL TUBA3D 113457 genome.wustl.edu 37 2 132237698 132237698 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080386.2 +1 validated p.G144 1.000 225 0% 275 18.2% 1 100% - - - HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin nucleotide-binding domain-like LOC100289293 100289293 genome.wustl.edu 37 2 132724289 132724289 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342261.1 -1 model p.P18H 0.030 53 0% 75 25.3% 0 - - - - NULL ENSG00000202174 0 genome.wustl.edu 37 2 133010761 133010761 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000365304 -1 novel NULL 1.000 26 0% 40 25% 0 - - - - - GPR39 2863 genome.wustl.edu 37 2 133175068 133175068 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001508.2 +1 validated p.Q151 0.998 113 0% 114 19.3% 11 63.6% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NCKAP5 344148 genome.wustl.edu 37 2 133538789 133538789 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207363.2 -1 validated p.A1629T 1.000 377 0% 187 11.2% 0 - probably_damaging(0.996) tolerated(0.09) deleterious(0.758) NULL NCKAP5 344148 genome.wustl.edu 37 2 133542951 133542951 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207363.2 -1 validated p.A478V 0.940 122 0% 87 18.4% 0 - benign(0.017) deleterious(0) neutral(0.445) NULL NCKAP5 344148 genome.wustl.edu 37 2 133543089 133543089 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207363.2 -1 validated p.S432L 1.000 272 0% 162 17.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MGAT5 4249 genome.wustl.edu 37 2 135102552 135102552 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002410.3 +1 validated p.D343 1.000 394 0% 92 21.7% 5 60% - - - NULL MGAT5 4249 genome.wustl.edu 37 2 135206232 135206232 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002410.3 +1 validated p.T680 0.827 139 0% 84 10.7% 10 40% - - - NULL CCNT2 905 genome.wustl.edu 37 2 135711069 135711069 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058241.1 +1 reviewed p.H348 1.000 301 0% 180 23.9% 12 33.3% - - - NULL CCNT2 905 genome.wustl.edu 37 2 135712145 135712145 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058241.1 +1 reviewed p.S707N 1.000 274 0% 135 14.8% 8 25% possibly_damaging(0.711) deleterious(0.02) deleterious(0.640) NULL YSK4 80122 genome.wustl.edu 37 2 135738884 135738884 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025052.3 -1 validated p.V1143I 1.000 289 0% 196 18.9% 0 - benign(0.32) deleterious(0.05) neutral(0.446) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase RAB3GAP1 22930 genome.wustl.edu 37 2 135893168 135893168 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012233.2 +1 reviewed p.R530H 1.000 179 0% 87 28.7% 16 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL RAB3GAP1 22930 genome.wustl.edu 37 2 135908029 135908029 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012233.2 +1 reviewed p.A672T 1.000 107 0% 49 16.3% 35 28.5% probably_damaging(1) tolerated(0.25) deleterious(0.537) NULL R3HDM1 23518 genome.wustl.edu 37 2 136473140 136473140 + Silent SNP C C T rs115242070 byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015361.2 +1 provisional p.S884 0.879 448 0.2% 349 22.9% 18 61.1% - - - NULL LCT 3938 genome.wustl.edu 37 2 136562531 136562531 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002299.2 -1 reviewed p.V1424M 0.994 146 0% 81 21% 0 - benign(0.234) deleterious(0.03) neutral(0.388) HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat LCT 3938 genome.wustl.edu 37 2 136575291 136575291 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002299.2 -1 reviewed p.L443I 1.000 23 0% 24 29.2% 0 - benign(0.353) tolerated(0.31) neutral(0.139) HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat LCT 3938 genome.wustl.edu 37 2 136581489 136581489 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002299.2 -1 reviewed p.L297F 0.271 546 0% 315 20.6% 0 - benign(0.004) deleterious(0) neutral(0.445) superfamily_Glyco_hydro_cat MCM6 4175 genome.wustl.edu 37 2 136614298 136614298 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005915.4 -1 reviewed p.E542D 1.000 326 0% 116 19% 49 0% possibly_damaging(0.505) deleterious(0.02) deleterious(0.552) HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases DARS 1615 genome.wustl.edu 37 2 136678117 136678117 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001349.2 -1 validated p.L289 1.000 435 0% 145 15.2% 113 30% - - - HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases LOC100131316 100131316 genome.wustl.edu 37 2 136742884 136742884 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001717835.2 +1 model p.P119H 0.000 20 0.000 9 0.444 0 - - - - NULL CXCR4 7852 genome.wustl.edu 37 2 136872637 136872637 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008540.1 -1 reviewed p.T291 0.021 262 0% 252 21% 51 13.7% - - - HMMPfam_7tm_1,superfamily_SSF81321 THSD7B 80731 genome.wustl.edu 37 2 137852566 137852566 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080427.1 +1 provisional p.L327 0.885 283 0% 80 25% 1 0% - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat THSD7B 80731 genome.wustl.edu 37 2 138434154 138434154 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080427.1 +1 provisional p.Y1571 1.000 410 0% 276 24.6% 1 0% - - - NULL LRP1B 53353 genome.wustl.edu 37 2 141128815 141128815 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018557.2 -1 validated p.S3603I 1.000 102 0% 35 14.3% 0 - probably_damaging(0.961) deleterious(0.01) deleterious(0.810) HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich LRP1B 53353 genome.wustl.edu 37 2 141135779 141135779 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018557.2 -1 validated p.G3536 1.000 379 0% 96 24% 0 - - - - HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich LRP1B 53353 genome.wustl.edu 37 2 141245223 141245223 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018557.2 -1 validated p.R3069H 1.000 257 0% 126 19.8% 0 - probably_damaging(0.988) deleterious(0.02) deleterious(0.821) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 LRP1B 53353 genome.wustl.edu 37 2 141607802 141607802 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018557.2 -1 validated p.P1603H 1.000 473 0% 185 27.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_LY,superfamily_SSF63825 LRP1B 53353 genome.wustl.edu 37 2 141625722 141625722 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018557.2 -1 validated p.P1427L 1.000 183 0% 84 26.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 LRP1B 53353 genome.wustl.edu 37 2 142012130 142012130 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018557.2 -1 validated p.D142N 0.879 687 0% 182 20.9% 0 - possibly_damaging(0.888) tolerated(0.56) neutral(0.354) HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196 KYNU 8942 genome.wustl.edu 37 2 143798196 143798196 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003937.2 +1 reviewed p.V414A 0.290 118 0% 43 34.9% 53 47.1% benign(0.164) deleterious(0.04) neutral(0.364) HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases MBD5 55777 genome.wustl.edu 37 2 149243369 149243369 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000416015 +1 known p.R941H 0.982 199 0% 100 23% 4 0% - - - NULL MBD5 55777 genome.wustl.edu 37 2 149247398 149247398 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018328.4 +1 reviewed p.L1166 0.970 193 0.5% 146 28.8% 7 28.5% - - - NULL EPC2 26122 genome.wustl.edu 37 2 149528735 149528735 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015630.3 +1 validated p.T500I 1.000 150 0% 66 24.2% 7 71.4% probably_damaging(0.997) deleterious(0.05) deleterious(0.811) NULL KIF5C 3800 genome.wustl.edu 37 2 149866663 149866663 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000435030 +1 known p.N855 0.910 50 0% 31 16.1% 0 - - - - NULL RIF1 55183 genome.wustl.edu 37 2 152276748 152276748 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018151.4 +1 reviewed p.R183M 1.000 342 0% 214 20.6% 1 0% probably_damaging(1) tolerated(0.18) deleterious(0.556) superfamily_ARM repeat RIF1 55183 genome.wustl.edu 37 2 152302974 152302974 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018151.4 +1 reviewed p.E710G 1.000 307 0% 283 19.4% 1 100% possibly_damaging(0.832) deleterious(0.01) deleterious(0.723) superfamily_ARM repeat NEB 4703 genome.wustl.edu 37 2 152346553 152346553 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.R6590* 1.000 956 0% 298 18.8% 1 0% - - - superfamily_SH3-domain NEB 4703 genome.wustl.edu 37 2 152350689 152350689 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.E6333K 1.000 689 0% 230 21.3% 0 - probably_damaging(0.982) - - HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152374876 152374876 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.L5885 1.000 778 0.1% 194 22.7% 0 - - - - HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152393702 152393702 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.A5350T 1.000 264 0% 66 21.2% 0 - possibly_damaging(0.625) tolerated(0.25) neutral(0.255) HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152447932 152447932 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000427231 -1 known p.T246I 0.891 1149 0% 231 13% 0 - unknown(0) - - NULL NEB 4703 genome.wustl.edu 37 2 152484106 152484106 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.H3115 1.000 363 0% 131 27.5% 0 - - - - HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152495895 152495895 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000397342 -1 known p.L1692V 0.089 571 0% 334 14.7% 0 - possibly_damaging(0.793) - - HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152499702 152499702 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.M2708V 0.999 403 0% 130 30% 0 - benign(0.001) tolerated(0.35) neutral(0.021) HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152521924 152521924 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.E1721K 0.967 707 0% 300 23.7% 0 - possibly_damaging(0.673) tolerated(0.25) neutral(0.276) HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152536330 152536330 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.A1054T 0.975 281 0% 149 27.5% 0 - benign(0) tolerated(0.6) neutral(0.004) HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152537332 152537332 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.R985H 1.000 543 0% 259 23.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152543981 152543981 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.D863 0.774 638 0.2% 276 15.9% 0 - - - - HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152579900 152579900 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004543.4 -1 reviewed p.S238I 1.000 301 0% 138 23.2% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Nebulin,HMMSmart_SM00227 STAM2 10254 genome.wustl.edu 37 2 152982828 152982828 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005843.4 -1 reviewed p.L364S 1.000 194 0% 69 17.4% 13 23% probably_damaging(1) deleterious(0) deleterious(0.945) NULL STAM2 10254 genome.wustl.edu 37 2 152982844 152982844 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005843.4 -1 reviewed p.E359K 1.000 182 0% 71 22.5% 16 31.2% benign(0.004) tolerated(0.22) neutral(0.042) NULL FMNL2 114793 genome.wustl.edu 37 2 153494188 153494188 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052905.3 +1 reviewed p.K982N 1.000 563 0.4% 216 19% 18 0% possibly_damaging(0.88) tolerated(0.09) deleterious(0.639) HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd PRPF40A 55660 genome.wustl.edu 37 2 153519200 153519200 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017892.3 -1 validated p.F747V 1.000 191 0% 96 18.8% 75 48% benign(0.429) tolerated(1) neutral(0.140) HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain GALNT13 114805 genome.wustl.edu 37 2 155115621 155115621 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052917.2 +1 validated p.W315* 1.000 464 0% 216 21.3% 0 - - - - superfamily_Nucleotide-diphospho-sugar transferases GALNT13 114805 genome.wustl.edu 37 2 155252578 155252578 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052917.2 +1 validated p.S411Y 1.000 307 0% 288 16.7% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) superfamily_Nucleotide-diphospho-sugar transferases KCNJ3 3760 genome.wustl.edu 37 2 155555690 155555690 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002239.2 +1 reviewed p.L135I 1.000 144 0% 148 22.3% 0 - probably_damaging(0.986) deleterious(0) deleterious(0.879) HMMPfam_IRK,superfamily_SSF81324 NR4A2 4929 genome.wustl.edu 37 2 157184464 157184464 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006186.3 -1 reviewed p.Q353* 1.000 93 0% 151 23.8% 3 0% - - - superfamily_Nuclear receptor ligand-binding domain GPD2 2820 genome.wustl.edu 37 2 157407203 157407203 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000408.4 +1 reviewed p.A306S 0.000 233 0% 56 14.3% 4 25% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain CYTIP 9595 genome.wustl.edu 37 2 158283897 158283897 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004288.4 -1 reviewed p.R171I 0.962 295 0.7% 162 29% 27 0% probably_damaging(0.979) deleterious(0) deleterious(0.867) superfamily_PDZ CYTIP 9595 genome.wustl.edu 37 2 158290933 158290933 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004288.4 -1 reviewed p.K76 0.998 276 0% 185 11.9% 25 0% - - - superfamily_PDZ ACVR1C 130399 genome.wustl.edu 37 2 158412762 158412762 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145259.2 -1 validated p.A129 0.519 350 0% 300 26.7% 0 - - - - NULL CCDC148 130940 genome.wustl.edu 37 2 159077162 159077162 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138803.3 -1 validated p.R439C 1.000 690 0% 351 19.9% 6 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TANC1 85461 genome.wustl.edu 37 2 160019807 160019807 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033394.2 +1 validated p.S232R 1.000 127 0% 43 14% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TANC1 85461 genome.wustl.edu 37 2 160028639 160028639 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033394.2 +1 validated p.D453E 0.985 318 0% 101 19.8% 4 50% benign(0.164) tolerated(0.43) neutral(0.028) NULL TANC1 85461 genome.wustl.edu 37 2 160035500 160035500 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033394.2 +1 validated p.A779D 1.000 86 0% 44 25% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TANC1 85461 genome.wustl.edu 37 2 160076249 160076249 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033394.2 +1 validated p.S1183R 1.000 213 0% 104 21.2% 3 33.3% probably_damaging(0.995) tolerated(0.06) deleterious(0.780) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat WDSUB1 151525 genome.wustl.edu 37 2 160136331 160136331 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128212.1 -1 validated p.S175N 1.000 212 0% 244 21.7% 6 66.6% benign(0.001) tolerated(0.43) neutral(0.013) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 BAZ2B 29994 genome.wustl.edu 37 2 160289462 160289462 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013450.2 -1 validated p.S569I 1.000 530 0% 283 19.8% 2 100% possibly_damaging(0.77) deleterious(0.01) deleterious(0.692) NULL LY75 4065 genome.wustl.edu 37 2 160755550 160755550 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002349.2 -1 validated p.V39I 0.764 133 0% 125 23.2% 5 0% benign(0.005) tolerated(0.64) neutral(0.003) HMMSmart_SM00458,superfamily_Ricin B-like lectins PLA2R1 22925 genome.wustl.edu 37 2 160873152 160873152 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007366.3 -1 validated p.L508 0.663 237 0% 107 24.3% 0 - - - - NULL PLA2R1 22925 genome.wustl.edu 37 2 160879250 160879250 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007366.3 -1 validated p.Q407R 0.863 379 0% 170 17.6% 0 - possibly_damaging(0.681) tolerated(0.49) neutral(0.254) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like ITGB6 3694 genome.wustl.edu 37 2 161030548 161030548 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000888.3 -1 provisional p.I232M 0.998 331 0% 140 25.7% 1 100% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like RBMS1 5937 genome.wustl.edu 37 2 161138785 161138785 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000392753 -1 known p.R278W 1.000 472 0.2% 246 22.4% 3 0% probably_damaging(0.982) tolerated(0.16) deleterious(0.486) NULL RBMS1 5937 genome.wustl.edu 37 2 161159874 161159874 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016836.3 -1 reviewed p.S176Y 1.000 351 0% 67 29.9% 18 27.7% benign(0) tolerated(0.13) neutral(0.253) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD PSMD14 10213 genome.wustl.edu 37 2 162242049 162242049 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005805.4 +1 validated p.S179 1.000 251 0% 36 19.4% 220 40.4% - - - NULL SLC4A10 57282 genome.wustl.edu 37 2 162711558 162711558 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022058.3 +1 reviewed p.H165 1.000 341 0% 296 23.3% 0 - - - - HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein DPP4 1803 genome.wustl.edu 37 2 162902047 162902047 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001935.3 -1 reviewed p.V121M 0.998 287 0% 89 19.1% 21 52.3% benign(0.006) tolerated(0.12) neutral(0.261) HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain IFIH1 64135 genome.wustl.edu 37 2 163130406 163130406 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022168.2 -1 reviewed p.L785M 1.000 415 0.5% 253 14.6% 100 29% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases IFIH1 64135 genome.wustl.edu 37 2 163134170 163134170 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022168.2 -1 reviewed p.C600Y 1.000 485 0.2% 211 26.5% 68 47% probably_damaging(1) tolerated(0.2) deleterious(0.549) superfamily_P-loop containing nucleoside triphosphate hydrolases KCNH7 90134 genome.wustl.edu 37 2 163280026 163280026 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033272.2 -1 reviewed p.I658M 1.000 359 0% 85 25.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels KCNH7 90134 genome.wustl.edu 37 2 163393434 163393434 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033272.2 -1 reviewed e3+1 1.000 423 0% 162 17.9% 0 - - - - - FIGN 55137 genome.wustl.edu 37 2 164466900 164466900 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018086.2 -1 validated p.P481H 1.000 431 0% 144 20.1% 0 - benign(0) deleterious(0.01) neutral(0.406) superfamily_SSF52540 COBLL1 22837 genome.wustl.edu 37 2 165551071 165551071 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014900.3 -1 validated p.A982D 0.000 200 0% 88 25% 7 57.1% benign(0) deleterious(0.01) neutral(0.406) NULL COBLL1 22837 genome.wustl.edu 37 2 165551336 165551336 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014900.3 -1 validated p.R894W 0.018 114 0% 60 16.7% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL COBLL1 22837 genome.wustl.edu 37 2 165552067 165552067 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014900.3 -1 validated p.S650N 0.536 528 0% 249 26.1% 3 0% benign(0.273) tolerated(0.12) neutral(0.290) NULL COBLL1 22837 genome.wustl.edu 37 2 165557165 165557165 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014900.3 -1 validated p.D482N 0.002 365 0.3% 168 28% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL SLC38A11 151258 genome.wustl.edu 37 2 165802190 165802190 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173512.1 -1 provisional p.D37Y 0.998 275 0% 163 22.1% 0 - benign(0.023) tolerated(1) neutral(0.001) NULL SCN3A 6328 genome.wustl.edu 37 2 165970393 165970393 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006922.3 -1 reviewed p.S1201I 1.000 292 0% 166 20.5% 0 - benign(0.008) tolerated(0.32) neutral(0.024) HMMPfam_Na_trans_assoc,superfamily_SSF81324 SCN3A 6328 genome.wustl.edu 37 2 165986551 165986551 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006922.3 -1 reviewed p.C941R 1.000 602 0% 204 16.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Ion_trans,superfamily_SSF81324 SCN2A 6326 genome.wustl.edu 37 2 166243300 166243300 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040142.1 +1 reviewed p.V1532 1.000 397 0% 112 15.2% 0 - - - - superfamily_Voltage-gated potassium channels TTC21B 79809 genome.wustl.edu 37 2 166767906 166767906 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024753.3 -1 validated p.L798F 1.000 438 0.2% 238 23.9% 9 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00028,superfamily_TPR-like TTC21B 79809 genome.wustl.edu 37 2 166771815 166771815 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024753.3 -1 validated p.Q678H 0.576 246 0% 119 24.4% 5 60% benign(0.062) deleterious(0.01) neutral(0.410) HMMSmart_SM00028,superfamily_TPR-like SCN1A 6323 genome.wustl.edu 37 2 166900388 166900388 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006920.4 -1 reviewed p.R612* 0.993 319 0% 105 27.6% 0 - - - - NULL SCN9A 6335 genome.wustl.edu 37 2 167055444 167055444 + Missense_Mutation SNP C C T rs180949263 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002977.3 -1 reviewed p.R1891H 0.985 365 0% 377 25.7% 0 - benign(0.016) deleterious(0.01) neutral(0.406) HMMPfam_IQ,HMMSmart_SM00015 SCN9A 6335 genome.wustl.edu 37 2 167159638 167159638 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002977.3 -1 reviewed p.S288N 0.000 454 0% 290 21% 0 - benign(0) tolerated(0.58) neutral(0.005) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN9A 6335 genome.wustl.edu 37 2 167160759 167160759 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002977.3 -1 reviewed p.S226Y 1.000 508 0% 299 24.4% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN7A 6332 genome.wustl.edu 37 2 167262938 167262938 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002976.2 -1 validated p.N1401D 1.000 312 0% 82 23.2% 0 - probably_damaging(0.986) tolerated(0.14) deleterious(0.684) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN7A 6332 genome.wustl.edu 37 2 167334105 167334105 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002976.2 -1 validated p.E34 0.849 259 0% 161 22.4% 0 - - - - NULL XIRP2 129446 genome.wustl.edu 37 2 167992435 167992435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.R142Q 1.000 187 0% 42 23.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL XIRP2 129446 genome.wustl.edu 37 2 168099097 168099097 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.E399K 0.901 143 0% 78 19.2% 0 - probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL XIRP2 129446 genome.wustl.edu 37 2 168101750 168101750 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.S1283Y 1.000 347 0% 146 22.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Xin XIRP2 129446 genome.wustl.edu 37 2 168103747 168103747 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.A1949T 0.001 60 0% 35 17.1% 0 - benign(0.024) tolerated(0.11) neutral(0.273) NULL XIRP2 129446 genome.wustl.edu 37 2 168104633 168104633 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.T2244N 0.572 141 0% 68 20.6% 0 - possibly_damaging(0.84) tolerated(0.06) deleterious(0.644) NULL XIRP2 129446 genome.wustl.edu 37 2 168104686 168104686 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.G2262C 0.998 124 0% 56 21.4% 0 - benign(0.063) deleterious(0.01) neutral(0.410) NULL XIRP2 129446 genome.wustl.edu 37 2 168105285 168105285 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.K2461N 0.006 218 0% 100 21% 0 - benign(0.002) deleterious(0) neutral(0.445) NULL XIRP2 129446 genome.wustl.edu 37 2 168107388 168107388 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152381.4 +1 validated p.K3162N 0.007 155 0% 55 21.8% 0 - benign(0) tolerated(0.47) neutral(0.011) NULL B3GALT1 8708 genome.wustl.edu 37 2 168725599 168725599 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020981.2 +1 reviewed p.A17V 1.000 294 0% 226 10.2% 0 - benign(0.273) deleterious(0) deleterious(0.474) NULL B3GALT1 8708 genome.wustl.edu 37 2 168725848 168725848 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020981.2 +1 reviewed p.T100M 1.000 120 0% 107 23.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Galactosyl_T CERS6 253782 genome.wustl.edu 37 2 169551484 169551484 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203463.1 +1 validated p.L178I 0.999 623 0% 176 11.4% 10 40% benign(0.002) tolerated(0.32) neutral(0.024) HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC CERS6 253782 genome.wustl.edu 37 2 169622254 169622254 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203463.1 +1 validated p.G333D 1.000 291 0% 213 20.2% 9 33.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL NOSTRIN 115677 genome.wustl.edu 37 2 169721470 169721470 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039724.3 +1 validated p.T504I 0.000 494 0% 108 22.2% 15 33.3% possibly_damaging(0.694) deleterious(0.01) deleterious(0.655) NULL G6PC2 57818 genome.wustl.edu 37 2 169763278 169763278 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021176.2 +1 reviewed p.G182E 1.000 489 0% 375 22.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase ABCB11 8647 genome.wustl.edu 37 2 169825858 169825858 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003742.2 -1 reviewed e15+2 0.997 346 0% 83 27.7% 0 - - - - - ABCB11 8647 genome.wustl.edu 37 2 169853231 169853231 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003742.2 -1 reviewed p.L131 0.996 235 0% 46 28.3% 0 - - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain LRP2 4036 genome.wustl.edu 37 2 170026249 170026249 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004525.2 -1 reviewed p.S3820 0.000 315 0% 92 12% 0 - - - - HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich LRP2 4036 genome.wustl.edu 37 2 170038805 170038805 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004525.2 -1 reviewed p.R3290 0.000 190 0.5% 82 29.3% 0 - - - - HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 LRP2 4036 genome.wustl.edu 37 2 170062956 170062956 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004525.2 -1 reviewed p.D2425G 1.000 242 0% 82 24.4% 0 - possibly_damaging(0.88) tolerated(0.08) deleterious(0.643) HMMSmart_LY,superfamily_SSF63825 LRP2 4036 genome.wustl.edu 37 2 170094720 170094720 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004525.2 -1 reviewed p.E1463K 0.412 244 0% 180 25.6% 0 - benign(0.023) tolerated(0.34) neutral(0.024) HMMSmart_LY,superfamily_SSF63825 LRP2 4036 genome.wustl.edu 37 2 170136004 170136004 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004525.2 -1 reviewed p.I481 0.999 238 0% 57 22.8% 0 - - - - HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825 LRP2 4036 genome.wustl.edu 37 2 170150687 170150687 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004525.2 -1 reviewed p.C208Y 1.000 242 0% 68 10.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich FASTKD1 79675 genome.wustl.edu 37 2 170394636 170394636 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024622.3 -1 validated p.R654Q 0.301 222 0% 92 21.7% 9 22.2% benign(0.003) tolerated(0.31) neutral(0.027) NULL FASTKD1 79675 genome.wustl.edu 37 2 170413713 170413713 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024622.3 -1 validated p.S356P 0.870 373 0% 234 14.5% 7 28.5% probably_damaging(0.958) tolerated(0.15) deleterious(0.643) NULL PPIG 9360 genome.wustl.edu 37 2 170493298 170493298 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004792.2 +1 validated p.D510E 0.306 150 0% 62 19.4% 44 43.1% benign(0.018) tolerated(0.69) neutral(0.003) NULL PHOSPHO2 493911 genome.wustl.edu 37 2 170557699 170557699 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008489.2 +1 provisional p.P73H 1.000 309 0% 235 25.1% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Put_Phosphatase,superfamily_HAD-like METTL5 29081 genome.wustl.edu 37 2 170671995 170671995 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014168.2 -1 provisional p.I178S 0.885 651 0% 678 25.7% 79 21.5% benign(0.026) deleterious(0) neutral(0.446) superfamily_SSF53335 UBR3 130507 genome.wustl.edu 37 2 170753073 170753073 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172070.3 +1 validated p.K431N 1.000 257 0% 131 26.7% 1 0% benign(0.378) tolerated(0.44) neutral(0.133) NULL UBR3 130507 genome.wustl.edu 37 2 170783470 170783470 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172070.3 +1 validated p.R776H 1.000 387 0% 160 28.1% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL UBR3 130507 genome.wustl.edu 37 2 170843265 170843265 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172070.3 +1 validated p.R1249* 0.931 256 0% 125 32% 3 0% - - - NULL MYO3B 140469 genome.wustl.edu 37 2 171092515 171092515 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000442690 +1 known p.A206T 1.000 413 0% 201 25.4% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TLK1 9874 genome.wustl.edu 37 2 171911678 171911678 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012290.4 -1 validated p.R185Q 1.000 70 0% 41 17.1% 20 35% benign(0.014) tolerated(0.79) neutral(0.002) NULL DCAF17 80067 genome.wustl.edu 37 2 172291690 172291690 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025000.3 +1 reviewed p.V75A 1.000 368 0% 516 22.9% 2 0% benign(0.046) tolerated(0.12) neutral(0.263) NULL DCAF17 80067 genome.wustl.edu 37 2 172330446 172330446 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025000.3 +1 reviewed p.A351D 1.000 394 0% 96 14.6% 1 0% probably_damaging(0.953) tolerated(1) neutral(0.397) NULL HAT1 8520 genome.wustl.edu 37 2 172841247 172841247 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003642.3 +1 reviewed p.K325N 1.000 205 0% 146 19.9% 78 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) superfamily_Acyl_CoA_acyltransferase RAPGEF4 11069 genome.wustl.edu 37 2 173830364 173830364 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007023.3 +1 validated p.A258V 1.000 320 0% 139 16.5% 2 50% probably_damaging(1) tolerated(0.24) deleterious(0.537) "HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain" ZAK 51776 genome.wustl.edu 37 2 174047603 174047603 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016653.2 +1 reviewed p.L90P 1.000 226 0% 92 23.9% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) CDCA7 83879 genome.wustl.edu 37 2 174223472 174223472 + Missense_Mutation SNP G G T rs12989017 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031942.4 +1 reviewed p.K18N 1.000 313 0% 275 21.8% 9 44.4% possibly_damaging(0.701) deleterious(0.04) deleterious(0.601) NULL CDCA7 83879 genome.wustl.edu 37 2 174232002 174232002 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031942.4 +1 reviewed p.A437V 1.000 491 0.4% 352 21.6% 82 41.4% probably_damaging(0.981) tolerated(0.19) deleterious(0.475) HMMPfam_zf-4CXXC_R1 SP3 6670 genome.wustl.edu 37 2 174820238 174820238 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000416195 -1 known p.P291L 1.000 287 0% 243 23.5% 23 21.7% - - - NULL OLA1 29789 genome.wustl.edu 37 2 174946749 174946749 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013341.3 -1 validated p.A258T 1.000 256 0% 108 26.9% 139 46.7% benign(0.057) tolerated(0.12) neutral(0.264) superfamily_P-loop containing nucleoside triphosphate hydrolases GPR155 151556 genome.wustl.edu 37 2 175300998 175300998 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033045.2 -1 validated p.N820T 0.999 307 0% 117 20.5% 2 50% probably_damaging(0.965) deleterious(0.04) deleterious(0.756) "HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain" GPR155 151556 genome.wustl.edu 37 2 175337775 175337775 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033045.2 -1 validated p.L260I 1.000 125 0% 128 22.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Mem_trans ATF2 1386 genome.wustl.edu 37 2 175976325 175976325 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001880.2 -1 reviewed p.P267S 1.000 211 0% 259 20.5% 16 31.2% benign(0.048) tolerated(0.28) neutral(0.035) NULL KIAA1715 80856 genome.wustl.edu 37 2 176812241 176812241 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030650.1 -1 validated p.L225I 1.000 272 0% 85 14.1% 4 25% benign(0.003) tolerated(0.42) neutral(0.014) NULL EVX2 344191 genome.wustl.edu 37 2 176945500 176945500 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080458.1 -1 reviewed p.A256S 1.000 35 0% 26 34.6% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_Homeodomain_like HOXD9 3235 genome.wustl.edu 37 2 176988888 176988888 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014213.3 +1 reviewed p.C348 1.000 113 0% 119 24.4% 25 76% - - - superfamily_Homeodomain-like HOXD1 3231 genome.wustl.edu 37 2 177054803 177054803 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024501.1 +1 reviewed p.S307F 0.912 114 0.9% 140 23.6% 0 - probably_damaging(0.981) deleterious(0.02) deleterious(0.808) NULL NFE2L2 4780 genome.wustl.edu 37 2 178097915 178097915 + Nonsense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000423513 -1 known p.Y139* 0.000 202 0% 92 21.7% 0 - - - - NULL TTC30A 92104 genome.wustl.edu 37 2 178482528 178482528 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152275.3 -1 validated p.R301M 0.394 150 0% 155 13.5% 4 0% benign(0.051) deleterious(0.01) neutral(0.409) superfamily_SSF48452 TTC30A 92104 genome.wustl.edu 37 2 178483167 178483167 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152275.3 -1 validated p.A88V 1.000 67 0% 58 13.8% 3 0% benign(0.408) deleterious(0.01) deleterious(0.538) superfamily_SSF48452 PDE11A 50940 genome.wustl.edu 37 2 178936806 178936806 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016953.3 -1 reviewed p.E120V 1.000 90 1.1% 108 25.9% 0 - possibly_damaging(0.83) deleterious(0.01) deleterious(0.721) NULL RBM45 129831 genome.wustl.edu 37 2 178988953 178988953 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152945.2 +1 provisional p.E390* 1.000 112 0% 84 22.6% 11 0% - - - NULL OSBPL6 114880 genome.wustl.edu 37 2 179213950 179213950 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145739.1 +1 reviewed e11-1 1.000 421 0% 239 20.9% 0 - - - - - OSBPL6 114880 genome.wustl.edu 37 2 179247992 179247992 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145739.1 +1 reviewed p.P625 0.403 133 0% 37 18.9% 0 - - - - HMMPfam_Oxysterol_BP OSBPL6 114880 genome.wustl.edu 37 2 179255832 179255832 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145739.1 +1 reviewed p.V782 0.942 544 0% 218 24.3% 2 0% - - - HMMPfam_Oxysterol_BP OSBPL6 114880 genome.wustl.edu 37 2 179257142 179257142 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145739.1 +1 reviewed p.S821Y 1.000 342 0% 152 21.1% 0 - probably_damaging(0.981) deleterious(0.03) deleterious(0.790) HMMPfam_Oxysterol_BP DFNB59 494513 genome.wustl.edu 37 2 179325829 179325829 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042702.3 +1 reviewed p.R296Q 1.000 683 0.1% 515 18.8% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PLEKHA3 65977 genome.wustl.edu 37 2 179365840 179365840 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019091.3 +1 validated p.R238* 0.999 279 0% 104 26.9% 16 6.2% - - - NULL TTN 7273 genome.wustl.edu 37 2 179395519 179395519 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.E32705* 0.997 686 0% 311 19.6% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179396725 179396725 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.E32303* 1.000 434 0% 161 16.1% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179398595 179398595 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133378.4 -1 reviewed p.T31681I 0.699 213 0% 97 26.8% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179403871 179403871 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.G30361C 1.000 463 0% 95 23.2% 2 50% probably_damaging(1) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179417781 179417781 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.T27379K 1.000 228 0% 34 17.6% 0 - benign(0.34) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179418252 179418252 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.P27257H 1.000 177 0% 37 32.4% 0 - probably_damaging(0.999) - - NULL TTN 7273 genome.wustl.edu 37 2 179418773 179418773 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.R27119C 1.000 475 0% 112 28.6% 0 - probably_damaging(0.999) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179421682 179421682 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.L26830S 1.000 213 0% 27 14.8% 0 - probably_damaging(0.999) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179432595 179432595 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133378.4 -1 reviewed p.P23520H 0.999 256 0.4% 49 22.4% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179438668 179438668 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.S21494I 1.000 297 0% 65 15.4% 0 - benign(0.19) - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179439040 179439040 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133378.4 -1 reviewed p.Q21372* 0.994 222 0% 50 18% 0 - probably_damaging(0.993) - - NULL TTN 7273 genome.wustl.edu 37 2 179441768 179441768 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.R20528S 1.000 242 0% 62 21% 0 - benign(0.059) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179445100 179445100 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.L19766M 1.000 550 0% 83 22.9% 4 0% probably_damaging(0.964) - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179464463 179464463 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.P16152H 1.000 428 0.2% 98 23.5% 0 - benign(0.127) - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179471822 179471822 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.R15268H 1.000 373 0.3% 107 25.2% 0 - possibly_damaging(0.535) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179477786 179477786 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.P13986 0.979 197 0% 65 24.6% 2 50% - - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179482120 179482120 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.R13330* 0.874 405 0% 73 19.2% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179485304 179485304 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.E12747V 1.000 319 0% 57 19.3% 0 - benign(0.099) - - HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179487478 179487478 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.F12376L 0.997 301 0% 79 20.3% 0 - benign(0.014) - - HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179501150 179501150 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.T11200 0.990 92 1.1% 25 28% 1 0% - - - HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179577700 179577700 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.P7774S 1.000 125 0% 63 22.2% 0 - unknown(0) - - NULL TTN 7273 genome.wustl.edu 37 2 179579917 179579917 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.L7422F 1.000 510 0% 210 21% 0 - unknown(0) - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179590504 179590504 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.K5605Q 0.394 398 0% 94 23.4% 0 - unknown(0) - - HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179593263 179593263 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.G5220R 1.000 226 0% 95 24.2% 0 - unknown(0) - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179594204 179594204 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356127 -1 known p.P4983S 1.000 274 0% 90 30% 0 - unknown(0) - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179611853 179611853 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133379.3 -1 reviewed p.L5092M 0.000 224 0% 82 26.8% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL TTN 7273 genome.wustl.edu 37 2 179616052 179616052 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133379.3 -1 reviewed p.S3692N 0.998 342 0% 85 16.5% 0 - benign(0.001) tolerated(0.86) neutral(0.001) NULL TTN 7273 genome.wustl.edu 37 2 179621008 179621008 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000342175 -1 known p.C3561Y 1.000 271 0% 56 17.9% 0 - unknown(0) - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409 TTN 7273 genome.wustl.edu 37 2 179629357 179629357 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133379.3 -1 reviewed p.T3295 0.156 162 0% 38 18.4% 0 - - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 TTN 7273 genome.wustl.edu 37 2 179640597 179640597 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133379.3 -1 reviewed p.R1998 0.908 179 0% 75 17.3% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179643819 179643819 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133379.3 -1 reviewed p.R1330 0.998 250 0.4% 79 15.2% 0 - - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 TTN 7273 genome.wustl.edu 37 2 179644161 179644161 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133379.3 -1 reviewed p.R1253K 1.000 99 0% 34 14.7% 0 - benign(0.014) - - NULL CCDC141 285025 genome.wustl.edu 37 2 179721095 179721095 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173648.2 -1 provisional p.K343N 1.000 303 0.3% 84 14.3% 0 - probably_damaging(1) tolerated(0.44) deleterious(0.512) NULL CCDC141 285025 genome.wustl.edu 37 2 179732779 179732779 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173648.2 -1 provisional p.D275N 0.915 177 0% 44 27.3% 0 - possibly_damaging(0.767) tolerated(0.17) neutral(0.343) NULL SESTD1 91404 genome.wustl.edu 37 2 180041186 180041186 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178123.4 -1 validated p.V82I 1.000 556 0% 153 19.6% 9 44.4% benign(0.001) deleterious(0.02) neutral(0.383) NULL LOC100131482 100131482 genome.wustl.edu 37 2 180679214 180679214 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001722616.1 +1 model p.C79 0.999 227 0% 179 19% 0 - - - - HMMPfam_DIM1,superfamily_Thioredoxin-like LOC100131482 100131482 genome.wustl.edu 37 2 180679334 180679334 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001722616.1 +1 model p.D119 0.928 185 0% 116 23.3% 0 - - - - HMMPfam_DIM1,superfamily_Thioredoxin-like SSFA2 6744 genome.wustl.edu 37 2 182780192 182780192 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130445.1 +1 validated p.Q609* 0.002 194 0% 113 26.5% 16 25% - - - NULL DNAJC10 54431 genome.wustl.edu 37 2 183621144 183621144 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018981.1 +1 provisional p.P586Q 1.000 290 0% 57 17.5% 62 48.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Thioredoxin-like,HMMPfam_Thioredoxin NCKAP1 10787 genome.wustl.edu 37 2 183792846 183792846 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_205842.1 -1 validated p.A1066V 1.000 485 0% 141 20.6% 123 42.2% benign(0.002) tolerated(0.25) neutral(0.037) HMMPfam_Nckap1 ZNF804A 91752 genome.wustl.edu 37 2 185803687 185803687 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194250.1 +1 provisional p.P1188 0.987 798 0% 245 23.7% 1 0% - - - NULL FSIP2 401024 genome.wustl.edu 37 2 186670445 186670445 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424728 +1 known p.R5471I 0.001 170 0% 63 22.2% 0 - benign(0.014) deleterious(0.02) neutral(0.384) NULL FSIP2 401024 genome.wustl.edu 37 2 186671119 186671119 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424728 +1 known p.E5696* 0.537 192 0% 50 24% 0 - - - - NULL FSIP2 401024 genome.wustl.edu 37 2 186678687 186678687 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424728 +1 known p.A6748D 0.004 87 0% 34 14.7% 1 100% possibly_damaging(0.847) deleterious(0.01) deleterious(0.731) NULL ZSWIM2 151112 genome.wustl.edu 37 2 187694534 187694534 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182521.2 -1 validated p.A339T 0.997 528 0% 105 27.6% 0 - benign(0.377) tolerated(0.07) neutral(0.440) superfamily_SSF57850 ZSWIM2 151112 genome.wustl.edu 37 2 187709485 187709485 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182521.2 -1 validated e3-1 0.994 138 0% 254 24.4% 0 - - - - - CALCRL 10203 genome.wustl.edu 37 2 188245237 188245237 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005795.4 -1 validated p.T122I 1.000 365 0% 474 18.8% 4 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_HRM,HMMSmart_HormR,superfamily_SSF111418 COL3A1 1281 genome.wustl.edu 37 2 189851864 189851864 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000090.3 +1 reviewed p.A176D 1.000 375 0% 151 9.9% 77 0% unknown(0) tolerated(0.16) - HMMPfam_Collagen SLC40A1 30061 genome.wustl.edu 37 2 190437680 190437680 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014585.5 -1 reviewed p.Q93H 1.000 140 0% 123 27.6% 21 28.5% benign(0.005) tolerated(0.28) neutral(0.032) superfamily_MFS general substrate transporter ASNSD1 54529 genome.wustl.edu 37 2 190531388 190531388 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019048.2 +1 validated p.G177V 1.000 119 0% 159 22% 12 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) HIBCH 26275 genome.wustl.edu 37 2 191152361 191152361 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014362.3 -1 reviewed p.S130F 0.083 220 0% 73 15.1% 22 40.9% possibly_damaging(0.592) tolerated(0.33) neutral(0.228) HMMPfam_ECH,superfamily_ClpP/crotonase INPP1 3628 genome.wustl.edu 37 2 191236105 191236105 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128928.1 +1 reviewed p.A393T 0.000 110 0% 49 16.3% 46 43.4% benign(0.002) tolerated(0.05) neutral(0.345) superfamily_Carbohydrate phosphatase NAB1 4664 genome.wustl.edu 37 2 191535133 191535133 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005966.3 +1 validated p.A301T 0.998 224 0% 112 16.1% 18 27.7% benign(0.228) deleterious(0) neutral(0.467) HMMPfam_NCD2 GLS 2744 genome.wustl.edu 37 2 191765337 191765337 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014905.3 +1 validated p.K218T 1.000 410 0% 303 20.8% 8 12.5% benign(0.148) deleterious(0.01) neutral(0.419) NULL STAT1 6772 genome.wustl.edu 37 2 191864408 191864408 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007315.3 -1 reviewed p.S162I 0.253 432 0.2% 259 10.8% 198 23.2% benign(0.006) tolerated(0.41) neutral(0.015) HMMPfam_STAT_alpha,superfamily_STAT MYO1B 4430 genome.wustl.edu 37 2 192255197 192255197 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130158.1 +1 validated p.P654L 1.000 103 0% 65 24.6% 22 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC39A10 57181 genome.wustl.edu 37 2 196545462 196545462 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127257.1 +1 validated p.K232N 0.997 162 0% 83 24.1% 5 40% benign(0.075) deleterious(0.04) neutral(0.354) NULL DNAH7 56171 genome.wustl.edu 37 2 196651847 196651847 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.V3589I 0.984 272 0% 92 26.1% 2 0% possibly_damaging(0.466) tolerated(0.26) neutral(0.187) HMMPfam_Dynein_heavy DNAH7 56171 genome.wustl.edu 37 2 196729053 196729053 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.R2442 0.996 466 0.2% 157 31.8% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH7 56171 genome.wustl.edu 37 2 196737053 196737053 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.R2185H 1.000 312 0% 177 22.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH7 56171 genome.wustl.edu 37 2 196749455 196749455 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.L1873I 0.998 285 0% 186 28% 0 - benign(0.001) tolerated(0.1) neutral(0.286) NULL DNAH7 56171 genome.wustl.edu 37 2 196822029 196822029 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.A1012T 0.322 273 0% 86 16.3% 0 - benign(0) tolerated(0.65) neutral(0.003) HMMPfam_DHC_N2 DNAH7 56171 genome.wustl.edu 37 2 196825276 196825276 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.P867S 0.992 181 0% 80 21.2% 0 - benign(0.355) tolerated(0.72) neutral(0.114) HMMPfam_DHC_N2 DNAH7 56171 genome.wustl.edu 37 2 196851821 196851821 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.M575L 0.996 325 0% 170 22.4% 0 - benign(0.001) tolerated(0.91) - NULL DNAH7 56171 genome.wustl.edu 37 2 196852954 196852954 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated e13-1 0.994 183 0% 113 20.4% 0 - - - - - DNAH7 56171 genome.wustl.edu 37 2 196883958 196883958 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018897.2 -1 validated p.D269N 1.000 196 0% 73 27.4% 0 - benign(0.051) tolerated(0.5) neutral(0.013) NULL HECW2 57520 genome.wustl.edu 37 2 197080599 197080599 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020760.1 -1 provisional p.A1533T 0.980 208 0% 156 11.5% 1 0% possibly_damaging(0.822) tolerated(0.3) neutral(0.340) HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain HECW2 57520 genome.wustl.edu 37 2 197184200 197184200 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020760.1 -1 provisional p.F472V 0.897 109 0% 123 23.6% 0 - benign(0.007) deleterious(0.05) neutral(0.345) NULL HECW2 57520 genome.wustl.edu 37 2 197194347 197194347 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020760.1 -1 provisional p.A175S 1.000 279 0% 107 15% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL GTF3C3 9330 genome.wustl.edu 37 2 197636590 197636590 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012086.2 -1 provisional p.Q714H 1.000 336 0% 216 11.6% 48 31.2% probably_damaging(0.978) tolerated(0.08) deleterious(0.720) superfamily_TPR-like GTF3C3 9330 genome.wustl.edu 37 2 197664242 197664242 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012086.2 -1 provisional p.E32K 1.000 310 0% 321 24.3% 9 33.3% unknown(0) - - NULL ANKRD44 91526 genome.wustl.edu 37 2 197986077 197986077 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153697.1 -1 provisional p.N270 0.938 286 0.3% 105 22.9% 3 0% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK COQ10B 80219 genome.wustl.edu 37 2 198324757 198324757 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025147.3 +1 provisional p.A69V 1.000 378 0% 410 21.7% 19 31.5% benign(0.043) deleterious(0.02) neutral(0.386) NULL RFTN2 130132 genome.wustl.edu 37 2 198436872 198436872 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144629.2 -1 validated p.R456W 0.000 388 0.3% 122 20.5% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL PLCL1 5334 genome.wustl.edu 37 2 198949322 198949322 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006226.3 +1 validated p.E263K 1.000 133 0% 45 28.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_efhand_like,superfamily_SSF47473 PLCL1 5334 genome.wustl.edu 37 2 198950679 198950679 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006226.3 +1 validated p.T715M 0.999 604 0.2% 172 20.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB SATB2 23314 genome.wustl.edu 37 2 200173629 200173629 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015265.3 -1 reviewed p.R532C 1.000 116 0.9% 76 18.4% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUT AOX1 316 genome.wustl.edu 37 2 201470281 201470281 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001159.3 +1 reviewed p.G279 0.000 231 0% 93 17.2% 0 - - - - HMMPfam_FAD_binding_5,superfamily_FAD-binding domain AOX1 316 genome.wustl.edu 37 2 201505881 201505881 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001159.3 +1 reviewed p.G877S 1.000 312 0% 94 22.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain BZW1 9689 genome.wustl.edu 37 2 201681964 201681964 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014670.2 +1 validated p.G180R 1.000 251 0% 248 25% 16 6.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL BZW1 9689 genome.wustl.edu 37 2 201682715 201682715 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014670.2 +1 validated p.A186D 1.000 292 0% 260 13.5% 16 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_ARM-type_fold FAM126B 285172 genome.wustl.edu 37 2 201873697 201873697 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173822.3 -1 validated p.R177W 1.000 273 0% 87 27.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Hyccin CFLAR 8837 genome.wustl.edu 37 2 202025292 202025292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127183.1 +1 validated p.V311I 0.986 205 0% 193 21.2% 22 27.2% benign(0.011) tolerated(1) neutral(0.001) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like CASP8 841 genome.wustl.edu 37 2 202134318 202134318 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001228.4 +1 reviewed p.L131 0.000 358 0% 93 14% 0 - - - - HMMSmart_DED,superfamily_DEATH_like CASP8 841 genome.wustl.edu 37 2 202141596 202141596 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080125.1 +1 reviewed p.C295Y 1.000 256 0% 133 14.3% 23 52.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like CASP8 841 genome.wustl.edu 37 2 202149672 202149672 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080125.1 +1 reviewed p.C371* 1.000 185 0% 113 23.9% 43 9.3% - - - HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,superfamily_Caspase-like ALS2CR11 151254 genome.wustl.edu 37 2 202358118 202358118 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439140 -1 known p.S982 0.000 63 0% 60 20% 0 - - - - NULL TMEM237 65062 genome.wustl.edu 37 2 202496841 202496841 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001044385.1 -1 validated p.Q162 0.460 281 0% 209 14.4% 17 23.5% - - - NULL MPP4 58538 genome.wustl.edu 37 2 202554962 202554962 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033066.2 -1 reviewed p.V81G 0.003 373 0% 102 20.6% 0 - benign(0.042) tolerated(0.34) neutral(0.025) HMMSmart_SM00569 ALS2 57679 genome.wustl.edu 37 2 202593836 202593836 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020919.3 -1 reviewed p.R884M 1.000 339 0% 185 24.3% 5 60% probably_damaging(0.982) deleterious(0.01) deleterious(0.832) superfamily_DBL homology domain (DH-domain) CDK15 65061 genome.wustl.edu 37 2 202677249 202677249 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139158.1 +1 provisional p.A87T 0.654 336 0% 153 17.6% 0 - benign(0) tolerated(0.49) neutral(0.011) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase BMPR2 659 genome.wustl.edu 37 2 203395663 203395663 + Missense_Mutation SNP G G A rs75601858 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001204.6 +1 reviewed p.A372T 1.000 124 0% 149 32.9% 10 40% probably_damaging(0.997) tolerated(0.39) deleterious(0.482) superfamily_Kinase_like,HMMPfam_Pkinase BMPR2 659 genome.wustl.edu 37 2 203420178 203420178 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001204.6 +1 reviewed p.R597Q 1.000 344 0.3% 175 21.1% 16 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL WDR12 55759 genome.wustl.edu 37 2 203749014 203749014 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018256.3 -1 reviewed p.V299M 1.000 210 0% 188 20.7% 65 50.7% benign(0.372) tolerated(0.07) neutral(0.438) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 ALS2CR8 79800 genome.wustl.edu 37 2 203826149 203826149 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001104586.1 +1 validated p.G278W 1.000 142 0% 76 17.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NBEAL1 65065 genome.wustl.edu 37 2 203990703 203990703 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114132.1 +1 validated p.L929I 0.998 346 0% 121 28.9% 0 - possibly_damaging(0.569) tolerated(0.5) neutral(0.205) NULL NBEAL1 65065 genome.wustl.edu 37 2 204000624 204000624 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114132.1 +1 validated p.T1317 0.027 194 0% 81 30.9% 0 - - - - NULL NBEAL1 65065 genome.wustl.edu 37 2 204002960 204002960 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114132.1 +1 validated p.N1518 1.000 323 0% 94 26.6% 0 - - - - NULL CYP20A1 57404 genome.wustl.edu 37 2 204103794 204103794 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177538.2 +1 reviewed p.D3 1.000 78 0% 49 16.3% 13 38.4% - - - NULL RAPH1 65059 genome.wustl.edu 37 2 204304582 204304582 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213589.1 -1 validated p.W1111G 1.000 278 0.4% 152 24.3% 1 0% benign(0.021) tolerated(0.22) neutral(0.043) NULL NRP2 8828 genome.wustl.edu 37 2 206548029 206548029 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201266.1 +1 reviewed p.P5 0.997 363 0% 540 13.5% 14 21.4% - - - NULL NRP2 8828 genome.wustl.edu 37 2 206590775 206590775 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201266.1 +1 reviewed p.P320L 1.000 279 0% 121 15.7% 14 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like NRP2 8828 genome.wustl.edu 37 2 206659485 206659485 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201266.1 +1 reviewed p.Y833* 0.134 72 0% 36 22.2% 15 26.6% - - - NULL INO80D 54891 genome.wustl.edu 37 2 206869499 206869499 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017759.4 -1 validated p.L893F 1.000 543 0.2% 206 16.5% 2 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL GPR1 2825 genome.wustl.edu 37 2 207040930 207040930 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098199.1 -1 validated p.L348M 0.001 214 0% 127 22% 0 - benign(0.267) tolerated(0.18) neutral(0.084) NULL GPR1 2825 genome.wustl.edu 37 2 207041014 207041014 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098199.1 -1 validated p.A320T 0.769 242 0% 134 20.9% 0 - benign(0.004) tolerated(0.23) neutral(0.042) superfamily_Family A G protein-coupled receptor-like GPR1 2825 genome.wustl.edu 37 2 207041126 207041126 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098199.1 -1 validated p.M282I 0.005 315 0% 169 23.1% 0 - benign(0) tolerated(0.21) neutral(0.044) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZDBF2 57683 genome.wustl.edu 37 2 207176105 207176105 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020923.1 +1 validated p.A2285T 0.000 113 0% 43 20.9% 2 0% possibly_damaging(0.482) - - NULL ADAM23 8745 genome.wustl.edu 37 2 207437908 207437908 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003812.2 +1 reviewed p.D576Y 1.000 494 0% 330 13.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin) DYTN 391475 genome.wustl.edu 37 2 207583003 207583003 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093730.1 -1 provisional p.M1V 0.994 398 0% 141 16.3% 0 - possibly_damaging(0.643) deleterious(0.05) deleterious(0.571) NULL MDH1B 130752 genome.wustl.edu 37 2 207615717 207615717 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039845.1 -1 validated p.E331D 0.893 421 0% 151 13.9% 0 - benign(0) tolerated(1) - superfamily_LDH C-terminal domain-like FASTKD2 22868 genome.wustl.edu 37 2 207638989 207638989 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136193.1 +1 reviewed p.R432Q 1.000 449 0% 236 17.4% 18 44.4% benign(0.267) tolerated(0.25) neutral(0.065) NULL KLF7 8609 genome.wustl.edu 37 2 207989096 207989096 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003709.2 -1 provisional p.T45 0.202 92 0% 113 18.6% 1 100% - - - NULL CREB1 1385 genome.wustl.edu 37 2 208432219 208432219 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134442.3 +1 reviewed p.Q112H 1.000 266 0% 136 22.1% 8 62.5% possibly_damaging(0.921) tolerated(0.09) deleterious(0.667) NULL PLEKHM3 389072 genome.wustl.edu 37 2 208693097 208693097 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080475.2 -1 validated p.D744 0.983 119 0% 62 17.7% 1 0% - - - NULL PLEKHM3 389072 genome.wustl.edu 37 2 208841380 208841380 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080475.2 -1 validated p.C514Y 1.000 120 0% 78 23.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL CRYGD 1421 genome.wustl.edu 37 2 208986454 208986454 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006891.3 -1 reviewed p.D156 1.000 108 0% 169 27.2% 0 - - - - HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF CRYGC 1420 genome.wustl.edu 37 2 208994239 208994239 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020989.3 -1 reviewed p.R60* 0.897 57 0% 67 23.9% 0 - - - - HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like CRYGB 1419 genome.wustl.edu 37 2 209010732 209010732 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005210.3 -1 validated p.F6L 1.000 200 0.5% 87 21.8% 0 - benign(0.036) tolerated(0.07) neutral(0.321) HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like IDH1 3417 genome.wustl.edu 37 2 209113170 209113170 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005896.2 -1 reviewed p.I113V 1.000 370 0% 282 23.8% 54 44.4% benign(0.001) tolerated(0.21) neutral(0.044) HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like PIKFYVE 200576 genome.wustl.edu 37 2 209168981 209168981 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015040.3 +1 reviewed p.D469 1.000 300 0.3% 91 19.8% 1 0% - - - "superfamily_""Winged helix"" DNA-binding domain" PIKFYVE 200576 genome.wustl.edu 37 2 209218653 209218653 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015040.3 +1 reviewed p.R1959Q 1.000 327 0% 365 18.6% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like PTH2R 5746 genome.wustl.edu 37 2 209292960 209292960 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005048.2 +1 reviewed p.Q37R 1.000 354 0% 185 18.4% 1 100% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_SSF111418 PTH2R 5746 genome.wustl.edu 37 2 209353778 209353778 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005048.2 +1 reviewed p.G373E 0.999 457 0% 270 21.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_2,superfamily_SSF81321 UNC80 285175 genome.wustl.edu 37 2 210685075 210685075 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.I668S 1.000 544 0% 235 23% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL UNC80 285175 genome.wustl.edu 37 2 210685095 210685095 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.V675M 1.000 589 0.2% 265 14.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL UNC80 285175 genome.wustl.edu 37 2 210685340 210685340 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.D756 0.946 145 0% 71 15.5% 0 - - - - NULL UNC80 285175 genome.wustl.edu 37 2 210696313 210696313 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.L925M 1.000 195 0% 63 15.9% 0 - probably_damaging(0.996) tolerated(0.44) deleterious(0.474) NULL UNC80 285175 genome.wustl.edu 37 2 210699684 210699684 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.P997 0.989 257 0.8% 96 16.7% 0 - - - - NULL UNC80 285175 genome.wustl.edu 37 2 210777370 210777370 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.M1557I 1.000 154 0% 64 12.5% 0 - possibly_damaging(0.444) tolerated(0.6) neutral(0.149) NULL UNC80 285175 genome.wustl.edu 37 2 210791579 210791579 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032504.1 +1 validated p.T1826I 1.000 328 0% 68 14.7% 0 - probably_damaging(0.995) tolerated(0.11) deleterious(0.729) NULL ACADL 33 genome.wustl.edu 37 2 211074977 211074977 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001608.3 -1 reviewed p.Q182H 0.997 439 0% 204 21.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM CPS1 1373 genome.wustl.edu 37 2 211457661 211457661 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122633.1 +1 reviewed p.P388Q 1.000 289 0% 64 23.4% 0 - possibly_damaging(0.712) deleterious(0.02) deleterious(0.641) HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like CPS1 1373 genome.wustl.edu 37 2 211459300 211459300 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122633.1 +1 reviewed p.P417 0.154 442 0.2% 109 22% 0 - - - - NULL CPS1 1373 genome.wustl.edu 37 2 211476963 211476963 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122633.1 +1 reviewed p.D844E 1.000 219 0% 74 10.8% 1 100% benign(0.003) tolerated(0.09) neutral(0.296) superfamily_Carbamoyl phosphate synthetase large subunit connection domain ERBB4 2066 genome.wustl.edu 37 2 212248376 212248376 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005235.2 -1 reviewed p.P1297 0.659 189 0% 74 21.6% 3 66.6% - - - NULL ERBB4 2066 genome.wustl.edu 37 2 212248468 212248468 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005235.2 -1 reviewed p.F1267L 1.000 348 0% 112 26.8% 1 0% benign(0.009) tolerated(0.39) neutral(0.017) NULL ERBB4 2066 genome.wustl.edu 37 2 212285279 212285279 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005235.2 -1 reviewed p.L1008V 0.986 306 0% 260 23.5% 1 100% probably_damaging(0.998) tolerated(0.16) deleterious(0.534) superfamily_Protein kinase-like (PK-like) IKZF2 22807 genome.wustl.edu 37 2 214012440 214012440 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016260.2 -1 reviewed p.M44R 1.000 642 0% 552 25.4% 0 - benign(0.016) tolerated(0.64) neutral(0.004) NULL SPAG16 79582 genome.wustl.edu 37 2 214794745 214794745 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024532.3 +1 validated p.G426C 0.998 300 0% 103 12.6% 0 - probably_damaging(0.995) deleterious(0.02) deleterious(0.841) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 SPAG16 79582 genome.wustl.edu 37 2 214794788 214794788 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024532.3 +1 validated p.W440* 1.000 300 0% 116 21.6% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 SPAG16 79582 genome.wustl.edu 37 2 214878729 214878729 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024532.3 +1 validated p.E485 0.999 364 0% 95 15.8% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 VWC2L 402117 genome.wustl.edu 37 2 215279089 215279089 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080500.2 +1 provisional p.G58S 1.000 260 0% 115 16.5% 0 - probably_damaging(0.984) deleterious(0) deleterious(0.875) HMMSmart_SM00214 VWC2L 402117 genome.wustl.edu 37 2 215301354 215301354 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080500.2 +1 provisional p.P131H 1.000 234 0% 69 26.1% 0 - probably_damaging(0.986) tolerated(0.15) deleterious(0.675) HMMSmart_SM00214 LOC100128203 100128203 genome.wustl.edu 37 2 215562666 215562666 + Missense_Mutation SNP G G A rs139472386 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001717729.1 +1 model p.A125T 1.000 224 0% 95 18.9% 0 - - - - HMMPfam_Endosulfine BARD1 580 genome.wustl.edu 37 2 215645882 215645882 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000465.2 -1 reviewed p.L239R 0.031 71 0% 22 22.7% 0 - possibly_damaging(0.826) tolerated(0.41) neutral(0.329) NULL BARD1 580 genome.wustl.edu 37 2 215646030 215646030 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000465.2 -1 reviewed p.D190Y 0.000 207 0% 88 13.6% 1 0% possibly_damaging(0.711) deleterious(0.04) deleterious(0.606) NULL ABCA12 26154 genome.wustl.edu 37 2 215797413 215797413 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173076.2 -1 reviewed p.S2578N 0.958 340 0% 73 23.3% 0 - benign(0.256) tolerated(0.11) neutral(0.298) NULL ABCA12 26154 genome.wustl.edu 37 2 215818666 215818666 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173076.2 -1 reviewed p.G2187S 0.999 342 0% 110 29.1% 0 - possibly_damaging(0.505) deleterious(0.02) deleterious(0.552) NULL ABCA12 26154 genome.wustl.edu 37 2 215854283 215854283 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173076.2 -1 reviewed p.Q1229H 0.997 338 0.3% 131 18.3% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ABCA12 26154 genome.wustl.edu 37 2 215882815 215882815 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173076.2 -1 reviewed p.E567* 1.000 462 0% 349 22.9% 0 - - - - NULL ABCA12 26154 genome.wustl.edu 37 2 215910561 215910561 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173076.2 -1 reviewed p.S291I 1.000 289 0% 79 19% 0 - possibly_damaging(0.852) deleterious(0.04) deleterious(0.676) NULL FN1 2335 genome.wustl.edu 37 2 216245579 216245579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212482.1 -1 reviewed p.H1797Y 1.000 90 0% 29 17.2% 6 0% possibly_damaging(0.916) tolerated(0.93) neutral(0.367) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III FN1 2335 genome.wustl.edu 37 2 216249676 216249676 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212482.1 -1 reviewed p.E1546K 1.000 161 0% 58 31% 18 0% benign(0.002) tolerated(0.26) neutral(0.034) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III FN1 2335 genome.wustl.edu 37 2 216251566 216251566 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212482.1 -1 reviewed p.E1486D 0.997 249 0% 81 9.9% 15 0% possibly_damaging(0.457) tolerated(0.12) neutral(0.410) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PECR 55825 genome.wustl.edu 37 2 216908627 216908627 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018441.5 -1 validated p.D276Y 1.000 118 0% 41 17.1% 48 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MARCH4 57574 genome.wustl.edu 37 2 217148316 217148316 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020814.2 -1 validated p.S218N 1.000 122 0% 57 17.5% 0 - probably_damaging(0.998) tolerated(0.22) deleterious(0.516) NULL IGFBP2 3485 genome.wustl.edu 37 2 217525359 217525359 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000597.2 +1 validated p.G174 0.000 59 1.7% 75 25.3% 130 25.3% - - - NULL TNS1 7145 genome.wustl.edu 37 2 218762543 218762543 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022648.4 -1 reviewed p.S49Y 1.000 146 0% 139 13.7% 4 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_SSF52799 RUFY4 285180 genome.wustl.edu 37 2 218940234 218940234 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198483.3 +1 validated p.S167N 0.000 75 0% 57 10.5% 2 0% benign(0.009) tolerated(0.97) neutral(0.001) NULL CXCR2 3579 genome.wustl.edu 37 2 218999671 218999671 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001557.3 +1 reviewed p.Y49 0.000 269 0% 147 22.4% 0 - - - - superfamily_Family A G protein-coupled receptor-like CXCR2 3579 genome.wustl.edu 37 2 218999760 218999760 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001557.3 +1 reviewed p.G79D 0.000 222 0% 130 23.8% 0 - benign(0.177) tolerated(0.44) neutral(0.029) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TMBIM1 64114 genome.wustl.edu 37 2 219143801 219143801 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022152.4 -1 validated p.A128T 0.000 241 0% 199 19.1% 130 36.9% benign(0) tolerated(0.57) neutral(0.006) HMMPfam_UPF0005 PNKD 25953 genome.wustl.edu 37 2 219206335 219206335 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015488.4 +1 reviewed p.I201 1.000 19 0% 30 20% 35 17.1% - - - HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase SLC11A1 6556 genome.wustl.edu 37 2 219259751 219259751 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000578.3 +1 reviewed p.S549F 0.005 69 0% 99 11.1% 8 0% possibly_damaging(0.791) deleterious(0) deleterious(0.741) NULL USP37 57695 genome.wustl.edu 37 2 219339438 219339438 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020935.2 -1 validated p.T738 0.174 256 0% 155 25.2% 3 33.3% - - - HMMPfam_UCH,superfamily_Cysteine proteinases USP37 57695 genome.wustl.edu 37 2 219341664 219341664 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020935.2 -1 validated p.L648I 0.998 244 0% 178 23.6% 1 100% benign(0.001) tolerated(0.84) neutral(0.001) HMMPfam_UCH,superfamily_Cysteine proteinases PLCD4 84812 genome.wustl.edu 37 2 219483489 219483489 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032726.2 +1 provisional p.V123 1.000 53 0% 55 18.2% 1 0% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ZNF142 7701 genome.wustl.edu 37 2 219510921 219510921 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105537.1 -1 validated p.H475R 1.000 430 0% 280 13.6% 8 12.5% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TTLL4 9654 genome.wustl.edu 37 2 219605270 219605270 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014640.4 +1 validated p.A542T 0.004 225 0% 56 16.1% 5 40% benign(0.029) deleterious(0.02) neutral(0.385) NULL TTLL4 9654 genome.wustl.edu 37 2 219618988 219618988 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014640.4 +1 validated p.S1159N 0.998 172 0% 65 26.2% 34 50% possibly_damaging(0.774) deleterious(0) deleterious(0.733) NULL PRKAG3 53632 genome.wustl.edu 37 2 219693291 219693291 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017431.2 -1 reviewed p.N222 0.822 275 0% 161 12.4% 0 - - - - HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain CCDC108 255101 genome.wustl.edu 37 2 219869090 219869090 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194302.2 -1 provisional p.E1713 0.986 491 0% 455 22.9% 0 - - - - NULL CCDC108 255101 genome.wustl.edu 37 2 219887049 219887049 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194302.2 -1 provisional p.T941 0.420 96 0% 66 24.2% 0 - - - - superfamily_PapD-like CCDC108 255101 genome.wustl.edu 37 2 219892705 219892705 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194302.2 -1 provisional p.Q626H 0.429 25 0% 26 26.9% 1 0% benign(0.012) tolerated(0.21) neutral(0.044) NULL SLC23A3 151295 genome.wustl.edu 37 2 220026702 220026702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144890.1 -1 validated p.A596S 0.450 126 0.8% 146 27.4% 0 - unknown(0) tolerated(0.23) - NULL CNPPD1 27013 genome.wustl.edu 37 2 220039517 220039517 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015680.4 -1 validated p.G165S 1.000 143 0% 178 28.1% 89 47.1% benign(0) tolerated(0.73) neutral(0.002) HMMPfam_Cyclin ZFAND2B 130617 genome.wustl.edu 37 2 220072682 220072682 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138802.1 +1 provisional p.S119I 1.000 68 0% 103 24.3% 38 31.5% benign(0.017) tolerated(0.06) neutral(0.323) HMMPfam_zf-AN1,HMMSmart_SM00154 ZFAND2B 130617 genome.wustl.edu 37 2 220072755 220072755 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138802.1 +1 provisional p.R143 0.830 85 0% 88 23.9% 50 24% - - - NULL ATG9A 79065 genome.wustl.edu 37 2 220087087 220087087 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077198.1 -1 validated p.R645M 1.000 19 0% 23 26.1% 57 43.8% benign(0.001) tolerated(0.12) neutral(0.261) NULL GLB1L 79411 genome.wustl.edu 37 2 220101934 220101934 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024506.3 -1 provisional p.D609Y 0.879 499 0.4% 424 17.7% 9 33.3% possibly_damaging(0.898) tolerated(0.07) deleterious(0.673) NULL GLB1L 79411 genome.wustl.edu 37 2 220107604 220107604 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440853 -1 known p.G25V 0.964 248 0% 264 14.8% 2 0% - - - HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases STK16 8576 genome.wustl.edu 37 2 220111907 220111907 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008910.2 +1 validated p.W127R 0.004 251 0% 176 18.2% 70 32.8% benign(0) tolerated(0.78) neutral(0.001) superfamily_Kinase_like,HMMPfam_Pkinase STK16 8576 genome.wustl.edu 37 2 220111954 220111954 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008910.2 +1 validated p.K142 1.000 179 0% 149 22.8% 57 52.6% - - - superfamily_Kinase_like,HMMPfam_Pkinase STK16 8576 genome.wustl.edu 37 2 220112194 220112194 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008910.2 +1 validated p.D166E 1.000 254 0% 260 18.5% 64 35.9% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Kinase_like,HMMPfam_Pkinase TUBA4A 7277 genome.wustl.edu 37 2 220115298 220115298 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006000.1 -1 reviewed p.V375M 1.000 159 0.6% 112 12.5% 152 32.2% benign(0.186) deleterious(0.02) neutral(0.401) superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C TUBA4A 7277 genome.wustl.edu 37 2 220116310 220116310 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006000.1 -1 reviewed p.V118L 1.000 397 0% 405 22.2% 63 38% benign(0) deleterious(0) neutral(0.445) HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like TUBA4A 7277 genome.wustl.edu 37 2 220116737 220116737 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006000.1 -1 reviewed p.T73 0.952 328 0% 323 24.1% 58 44.8% - - - HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like DNPEP 23549 genome.wustl.edu 37 2 220251417 220251417 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429013 -1 known p.R113W 0.996 64 0% 114 15.8% 111 29.7% - - - HMMPfam_Peptidase_M18,superfamily_Zn-dependent exopeptidases SPEG 10290 genome.wustl.edu 37 2 220329178 220329178 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005876.4 +1 validated p.R910H 1.000 112 0% 70 32.9% 0 - probably_damaging(0.988) tolerated(0.06) deleterious(0.760) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin SPEG 10290 genome.wustl.edu 37 2 220341621 220341621 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005876.4 +1 validated p.D1493Y 1.000 141 0% 151 29.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin SPEG 10290 genome.wustl.edu 37 2 220354243 220354243 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005876.4 +1 validated p.L2835F 0.997 51 0% 71 19.7% 1 0% probably_damaging(0.962) tolerated(0.28) neutral(0.436) NULL GMPPA 29926 genome.wustl.edu 37 2 220370416 220370416 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000443704 +1 known e9-1 0.889 207 0% 214 24.8% 3 0% - - - - OBSL1 23363 genome.wustl.edu 37 2 220428201 220428201 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015311.2 -1 reviewed p.F852 0.001 122 0% 134 28.4% 130 56.9% - - - HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 INHA 3623 genome.wustl.edu 37 2 220439555 220439555 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002191.2 +1 reviewed p.G136 0.973 29 0% 27 22.2% 3 100% - - - NULL STK11IP 114790 genome.wustl.edu 37 2 220470445 220470445 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456909 +1 known p.R245Q 0.036 179 0.6% 146 26.7% 12 33.3% benign(0) tolerated(0.31) neutral(0.027) superfamily_Outer arm dynein light chain 1 STK11IP 114790 genome.wustl.edu 37 2 220473425 220473425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456909 +1 known p.R575H 0.115 64 0% 58 19% 12 41.6% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL STK11IP 114790 genome.wustl.edu 37 2 220479901 220479901 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456909 +1 known p.E985D 0.014 58 0% 62 16.1% 21 28.5% possibly_damaging(0.942) deleterious(0) deleterious(0.832) NULL STK11IP 114790 genome.wustl.edu 37 2 220480023 220480023 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456909 +1 known p.R1026H 0.857 44 0% 41 19.5% 19 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL SLC4A3 6508 genome.wustl.edu 37 2 220501536 220501536 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201574.2 +1 validated p.E852 1.000 325 0% 240 26.7% 1 0% - - - HMMPfam_HCO3_cotransp SLC4A3 6508 genome.wustl.edu 37 2 220505562 220505562 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201574.2 +1 validated p.A1194T 0.940 81 0% 82 20.7% 2 50% benign(0.012) tolerated(0.1) neutral(0.287) NULL SGPP2 130367 genome.wustl.edu 37 2 223423493 223423493 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152386.2 +1 provisional p.R359M 0.673 213 0% 137 10.2% 58 36.2% benign(0.261) tolerated(0.1) neutral(0.314) NULL ACSL3 2181 genome.wustl.edu 37 2 223783863 223783863 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004457.3 +1 reviewed p.G250S 1.000 178 0% 76 23.7% 15 53.3% benign(0.008) tolerated(0.22) neutral(0.042) HMMPfam_AMP-binding,superfamily_SSF56801 ACSL3 2181 genome.wustl.edu 37 2 223791824 223791824 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000463992 +1 known NULL 0.998 346 0% 165 24.2% 26 38.4% benign(0.059) deleterious(0.02) neutral(0.387) - SCG2 7857 genome.wustl.edu 37 2 224463027 224463027 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003469.3 -1 reviewed p.R325M 0.910 135 0% 106 26.4% 0 - possibly_damaging(0.509) deleterious(0.01) deleterious(0.576) HMMPfam_Granin SCG2 7857 genome.wustl.edu 37 2 224463695 224463695 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003469.3 -1 reviewed p.R102 0.867 468 0% 335 17.9% 0 - - - - HMMPfam_Granin WDFY1 57590 genome.wustl.edu 37 2 224770671 224770671 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020830.3 -1 reviewed p.T109 0.992 606 0% 246 17.5% 22 36.3% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like MRPL44 65080 genome.wustl.edu 37 2 224828559 224828559 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022915.3 +1 reviewed p.L245 1.000 187 0% 247 27.1% 48 39.5% - - - superfamily_SSF54768 SERPINE2 5270 genome.wustl.edu 37 2 224849514 224849514 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136530.1 -1 validated p.W292* 1.000 290 0% 93 18.3% 143 0% - - - HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINE2 5270 genome.wustl.edu 37 2 224856586 224856586 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136530.1 -1 validated p.F219V 0.985 248 0% 93 18.3% 151 93.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINE2 5270 genome.wustl.edu 37 2 224866620 224866620 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136530.1 -1 validated p.T12P 1.000 196 0% 126 21.4% 21 0% possibly_damaging(0.45) - - NULL FAM124B 79843 genome.wustl.edu 37 2 225266340 225266340 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122779.1 -1 validated p.S49I 0.705 73 0% 29 31% 0 - probably_damaging(0.983) tolerated(0.12) deleterious(0.690) NULL DOCK10 55619 genome.wustl.edu 37 2 225664958 225664958 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409802 -1 known p.R198C 0.360 383 0.3% 82 17.1% 4 25% - - - NULL DOCK10 55619 genome.wustl.edu 37 2 225688256 225688256 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014689.2 -1 validated p.T1049A 1.000 519 0% 241 24.5% 2 0% benign(0.303) tolerated(0.13) neutral(0.347) NULL DOCK10 55619 genome.wustl.edu 37 2 225717835 225717835 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014689.2 -1 validated p.C631 1.000 217 0% 111 22.5% 0 - - - - NULL DOCK10 55619 genome.wustl.edu 37 2 225721591 225721591 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014689.2 -1 validated p.V598 0.978 353 0% 230 24.3% 1 0% - - - NULL DOCK10 55619 genome.wustl.edu 37 2 225739030 225739030 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014689.2 -1 validated p.R352* 1.000 315 0% 148 16.2% 0 - - - - NULL NYAP2 57624 genome.wustl.edu 37 2 226273745 226273745 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020864.1 +1 validated p.R50I 1.000 258 0% 53 22.6% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL NYAP2 57624 genome.wustl.edu 37 2 226447662 226447662 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020864.1 +1 validated p.P510L 1.000 11 0% 13 30.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL IRS1 3667 genome.wustl.edu 37 2 227662757 227662757 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005544.2 -1 reviewed p.P233L 1.000 88 0% 106 33% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729 RHBDD1 84236 genome.wustl.edu 37 2 227731981 227731981 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032276.3 +1 validated p.P171 0.979 884 0.1% 364 21.7% 7 28.5% - - - HMMPfam_Rhomboid RHBDD1 84236 genome.wustl.edu 37 2 227771531 227771531 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032276.3 +1 validated p.A197T 1.000 383 0% 141 17.7% 13 23% probably_damaging(0.969) deleterious(0.02) deleterious(0.794) HMMPfam_Rhomboid COL4A4 1286 genome.wustl.edu 37 2 227917120 227917120 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000092.4 -1 reviewed p.G957* 0.996 278 0% 161 21.7% 0 - - - - HMMPfam_Collagen COL4A4 1286 genome.wustl.edu 37 2 227924316 227924316 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000092.4 -1 reviewed p.P730S 1.000 72 0% 99 26.3% 0 - probably_damaging(0.988) tolerated(0.07) deleterious(0.756) NULL COL4A3 1285 genome.wustl.edu 37 2 228118831 228118831 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000091.3 +1 reviewed p.L257I 0.967 295 0% 84 20.2% 1 100% probably_damaging(0.982) tolerated(0.5) neutral(0.436) NULL COL4A3 1285 genome.wustl.edu 37 2 228162516 228162516 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000091.3 +1 reviewed p.G1231D 0.981 59 0% 44 27.3% 0 - unknown(0) tolerated(0.13) - HMMPfam_Collagen MFF 56947 genome.wustl.edu 37 2 228205057 228205057 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436791 +1 known p.C122* 1.000 278 0% 120 24.2% 88 48.8% possibly_damaging(0.909) deleterious(0.02) deleterious(0.745) HMMPfam_DUF800 C2orf83 56918 genome.wustl.edu 37 2 228476324 228476324 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020161.3 -1 validated p.K80R 0.164 208 0% 270 15.9% 0 - benign(0.004) - - NULL SLC19A3 80704 genome.wustl.edu 37 2 228560794 228560794 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025243.3 -1 reviewed p.A328V 0.999 131 0% 57 15.8% 4 0% probably_damaging(0.998) tolerated(0.06) deleterious(0.797) HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter PID1 55022 genome.wustl.edu 37 2 229890744 229890744 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017933.4 -1 validated p.W117C 1.000 104 0% 41 24.4% 1 100% possibly_damaging(0.688) deleterious(0) deleterious(0.691) NULL TRIP12 9320 genome.wustl.edu 37 2 230632326 230632326 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004238.1 -1 provisional p.R1975C 1.000 340 0% 176 13.1% 195 17.9% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT TRIP12 9320 genome.wustl.edu 37 2 230633360 230633360 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004238.1 -1 provisional p.V1918 1.000 355 0% 197 20.3% 118 29.6% - - - HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT FBXO36 130888 genome.wustl.edu 37 2 230841054 230841054 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174899.4 +1 validated p.S65* 0.001 212 0% 93 16.1% 5 20% - - - NULL SP110 3431 genome.wustl.edu 37 2 231033860 231033860 + Missense_Mutation SNP C C T rs181058279 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080424.2 -1 reviewed p.G708S 0.000 252 0% 107 25.2% 8 12.5% benign(0) tolerated(0.93) - NULL SP110 3431 genome.wustl.edu 37 2 231037655 231037655 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080424.2 -1 reviewed p.C537 0.866 135 0% 76 14.5% 3 66.6% - - - HMMSmart_SM00249,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD SP140 11262 genome.wustl.edu 37 2 231174668 231174668 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007237.4 +1 validated p.C696 0.128 604 0% 591 21.8% 11 18.1% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD SP100 6672 genome.wustl.edu 37 2 231307780 231307780 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080391.1 +1 validated p.R79H 0.921 300 0% 154 26% 57 28% benign(0.015) deleterious(0) neutral(0.445) HMMPfam_Sp100 SP100 6672 genome.wustl.edu 37 2 231367802 231367802 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080391.1 +1 validated p.P581L 0.000 380 0% 115 20% 15 26.6% probably_damaging(0.998) tolerated(0.24) deleterious(0.512) NULL SP100 6672 genome.wustl.edu 37 2 231380328 231380328 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003113.3 +1 validated p.E871D 0.998 182 0% 46 19.6% 15 40% unknown(0) tolerated(0.25) - NULL CAB39 51719 genome.wustl.edu 37 2 231683287 231683287 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130849.1 +1 validated p.N298 1.000 316 0% 206 24.3% 43 34.8% - - - HMMPfam_Mo25,superfamily_ARM repeat GPR55 9290 genome.wustl.edu 37 2 231775145 231775145 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005683.3 -1 validated p.S178N 0.034 150 0.7% 78 19.2% 0 - possibly_damaging(0.88) tolerated(0.23) neutral(0.385) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NCL 4691 genome.wustl.edu 37 2 232324978 232324978 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005381.2 -1 reviewed p.L309I 0.716 291 0% 255 20.4% 476 44.1% benign(0.038) tolerated(0.07) neutral(0.321) HMMSmart_RRM,superfamily_SSF54928 C2orf57 165100 genome.wustl.edu 37 2 232457684 232457684 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152614.2 +1 validated p.L8M 0.000 67 0% 54 14.8% 0 - benign(0.038) - - NULL ALPPL2 251 genome.wustl.edu 37 2 233272711 233272711 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031313.2 +1 reviewed p.S211Y 0.786 41 0% 33 21.2% 2326 51.4% benign(0) tolerated(0.13) neutral(0.253) HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core ECEL1 9427 genome.wustl.edu 37 2 233347298 233347298 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004826.2 -1 validated p.A569V 1.000 59 0% 78 16.7% 3 0% possibly_damaging(0.8) tolerated(0.84) neutral(0.301) "superfamily_Metalloproteases (""zincins"") catalytic domain" CHRND 1144 genome.wustl.edu 37 2 233391346 233391346 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000751.1 +1 reviewed p.V54I 0.001 30 0% 54 18.5% 0 - benign(0.024) tolerated(0.17) neutral(0.060) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like CHRNG 1146 genome.wustl.edu 37 2 233407995 233407995 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005199.4 +1 reviewed p.Q272H 1.000 111 0% 150 18.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM KCNJ13 3769 genome.wustl.edu 37 2 233635851 233635851 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000444142 -1 known p.L42M 1.000 457 0% 120 10.8% 0 - - - - HMMPfam_IRK,superfamily_Voltage-gated potassium channels GIGYF2 26058 genome.wustl.edu 37 2 233675969 233675969 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103147.1 +1 reviewed p.Q659H 0.999 278 0% 173 29.5% 14 28.5% probably_damaging(0.976) tolerated(0.23) neutral(0.459) NULL GIGYF2 26058 genome.wustl.edu 37 2 233697630 233697630 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103147.1 +1 reviewed p.R886W 1.000 72 0% 47 14.9% 19 15.7% unknown(0) deleterious(0) - NULL GIGYF2 26058 genome.wustl.edu 37 2 233710595 233710595 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103147.1 +1 reviewed p.D1174 1.000 270 0% 192 20.3% 21 23.8% - - - NULL NGEF 25791 genome.wustl.edu 37 2 233757668 233757668 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019850.2 -1 validated p.S361Y 0.672 216 0% 184 22.8% 3 33.3% benign(0.244) deleterious(0.03) neutral(0.389) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) NGEF 25791 genome.wustl.edu 37 2 233834931 233834931 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019850.2 -1 validated p.E126* 0.000 447 0% 210 18.1% 0 - - - - NULL INPP5D 3635 genome.wustl.edu 37 2 234056167 234056167 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000359570 +1 known p.D319 0.995 169 0% 89 20.2% 4 0% - - - NULL INPP5D 3635 genome.wustl.edu 37 2 234098544 234098544 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000359570 +1 known p.L803I 1.000 482 0.2% 337 20.8% 12 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL ATG16L1 55054 genome.wustl.edu 37 2 234201051 234201051 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030803.6 +1 validated p.C533 0.985 427 0% 240 18.8% 28 46.4% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like SAG 6295 genome.wustl.edu 37 2 234238164 234238164 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000541.4 +1 reviewed p.P225H 1.000 281 0% 134 17.2% 0 - possibly_damaging(0.558) tolerated(0.06) deleterious(0.513) HMMPfam_Arrestin_C,superfamily_Ig_E-set DGKD 8527 genome.wustl.edu 37 2 234371341 234371341 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152879.2 +1 reviewed p.R1049H 1.000 122 0% 119 22.7% 4 50% benign(0) tolerated(0.19) neutral(0.050) NULL USP40 55230 genome.wustl.edu 37 2 234421267 234421267 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018218.2 -1 validated p.A806 0.992 176 0% 90 13.3% 7 42.8% - - - NULL USP40 55230 genome.wustl.edu 37 2 234434130 234434130 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018218.2 -1 validated p.L613I 0.939 519 0% 152 17.8% 7 28.5% probably_damaging(0.971) deleterious(0.01) deleterious(0.819) NULL USP40 55230 genome.wustl.edu 37 2 234434150 234434150 + Missense_Mutation SNP C C T rs190323051 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018218.2 -1 validated p.G606E 1.000 557 0% 168 17.3% 6 33.3% probably_damaging(0.999) tolerated(0.17) deleterious(0.549) NULL USP40 55230 genome.wustl.edu 37 2 234457783 234457783 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000435959 -1 known p.L310S 1.000 131 0% 73 20.5% 1 0% unknown(0) - - NULL UGT1A5 54579 genome.wustl.edu 37 2 234621873 234621873 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019078.1 +1 reviewed p.T79M 0.000 246 0% 203 24.1% 0 - possibly_damaging(0.505) deleterious(0.03) deleterious(0.533) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT1A3 54659 genome.wustl.edu 37 2 234638466 234638466 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019093.2 +1 reviewed p.A232T 0.180 802 0% 680 24.3% 0 - possibly_damaging(0.736) tolerated(0.09) deleterious(0.566) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase DNAJB3 414061 genome.wustl.edu 37 2 234652268 234652268 + Missense_Mutation SNP C C T rs146398257 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001394.3 -1 validated p.V99I 0.998 44 0% 55 23.6% 0 - - - - superfamily_DnaJ_N UGT1A1 54658 genome.wustl.edu 37 2 234669401 234669401 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000463.2 +1 reviewed p.C156 0.988 196 0% 211 17.1% 0 - - - - HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase SPP2 6694 genome.wustl.edu 37 2 234969049 234969049 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006944.2 +1 reviewed p.A124T 0.000 76 1.3% 30 13.3% 0 - benign(0.395) tolerated(0.25) neutral(0.164) HMMPfam_Spp-24,superfamily_Cystatin/monellin SPP2 6694 genome.wustl.edu 37 2 234975182 234975182 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006944.2 +1 reviewed p.I150M 0.999 570 0% 349 18.3% 0 - benign(0.006) tolerated(0.42) neutral(0.014) HMMPfam_Spp-24 SH3BP4 23677 genome.wustl.edu 37 2 235949682 235949682 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014521.2 +1 reviewed p.G90D 0.989 237 0% 207 27.1% 17 47% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain SH3BP4 23677 genome.wustl.edu 37 2 235950712 235950712 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014521.2 +1 reviewed p.S433R 0.881 42 0% 34 20.6% 17 47% possibly_damaging(0.846) tolerated(0.13) deleterious(0.578) NULL SH3BP4 23677 genome.wustl.edu 37 2 235951030 235951030 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014521.2 +1 reviewed p.V539 0.700 142 0% 123 22% 22 31.8% - - - NULL ASB18 401036 genome.wustl.edu 37 2 237103676 237103676 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212556.2 -1 provisional p.L414I 0.491 218 0% 139 23.7% 0 - possibly_damaging(0.608) tolerated(0.14) neutral(0.460) NULL CXCR7 57007 genome.wustl.edu 37 2 237489807 237489807 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020311.2 +1 reviewed p.F233L 1.000 73 0% 62 19.4% 56 33.9% benign(0) tolerated(0.35) neutral(0.021) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like COPS8 10920 genome.wustl.edu 37 2 237998506 237998506 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006710.4 +1 reviewed p.A67V 1.000 138 0% 144 26.4% 46 41.3% possibly_damaging(0.907) deleterious(0.02) deleterious(0.744) HMMPfam_PCI_Csn8 COL6A3 1293 genome.wustl.edu 37 2 238253360 238253360 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004369.3 -1 reviewed p.I2434S 0.999 113 0.9% 62 27.4% 11 0% probably_damaging(0.999) - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like COL6A3 1293 genome.wustl.edu 37 2 238277659 238277659 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004369.3 -1 reviewed p.D1483N 0.011 177 0% 127 19.7% 4 0% unknown(0) - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like COL6A3 1293 genome.wustl.edu 37 2 238303483 238303483 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004369.3 -1 reviewed p.G152 0.663 217 0% 74 28.4% 1 0% - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like MLPH 79083 genome.wustl.edu 37 2 238449154 238449154 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024101.5 +1 reviewed p.P423H 0.000 84 0% 58 25.9% 35 51.4% possibly_damaging(0.653) tolerated(0.09) deleterious(0.526) NULL LRRFIP1 9208 genome.wustl.edu 37 2 238601158 238601158 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001137552.1 +1 validated p.Q20 0.572 19 0% 18 27.8% 7 28.5% - - - NULL LRRFIP1 9208 genome.wustl.edu 37 2 238671370 238671370 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001137552.1 +1 validated p.E338D 0.008 218 0% 119 19.3% 40 40% possibly_damaging(0.797) tolerated(0.52) neutral(0.308) HMMPfam_DUF2051 ESPNL 339768 genome.wustl.edu 37 2 239040287 239040287 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194312.2 +1 validated p.N978D 1.000 23 0% 17 23.5% 3 33.3% benign(0.144) deleterious(0.01) neutral(0.418) NULL ILKAP 80895 genome.wustl.edu 37 2 239082232 239082232 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030768.2 -1 reviewed p.R300H 1.000 134 0% 123 22.8% 93 35.4% possibly_damaging(0.539) tolerated(0.2) neutral(0.231) HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C ILKAP 80895 genome.wustl.edu 37 2 239090710 239090710 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030768.2 -1 reviewed p.V278I 1.000 745 0% 372 23.9% 82 41.4% probably_damaging(0.982) tolerated(0.11) deleterious(0.698) HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C PER2 8864 genome.wustl.edu 37 2 239161713 239161713 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022817.2 -1 reviewed p.R984H 0.998 71 0% 70 25.7% 5 60% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PER2 8864 genome.wustl.edu 37 2 239170966 239170966 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022817.2 -1 reviewed p.Q391H 1.000 161 0% 131 19.1% 4 25% unknown(0) tolerated(0.06) - HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain) PER2 8864 genome.wustl.edu 37 2 239177590 239177590 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022817.2 -1 reviewed p.E266 1.000 277 0% 188 20.2% 3 33.3% - - - NULL TRAF3IP1 26146 genome.wustl.edu 37 2 239237349 239237349 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015650.3 +1 validated p.R126L 1.000 261 0% 202 18.8% 15 60% benign(0.08) deleterious(0.02) neutral(0.389) HMMPfam_MIP-T3 TRAF3IP1 26146 genome.wustl.edu 37 2 239237683 239237683 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015650.3 +1 validated p.K205N 0.760 359 0% 283 17.7% 16 43.7% benign(0.348) deleterious(0.03) deleterious(0.474) HMMPfam_MIP-T3 TRAF3IP1 26146 genome.wustl.edu 37 2 239264687 239264687 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015650.3 +1 validated p.E552G 1.000 196 0% 172 25.6% 23 52.1% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) HMMPfam_MIP-T3 ASB1 51665 genome.wustl.edu 37 2 239353086 239353086 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040445.1 +1 reviewed p.A200T 0.999 28 0% 54 22.2% 26 38.4% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK ASB1 51665 genome.wustl.edu 37 2 239353216 239353216 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040445.1 +1 reviewed p.V243A 0.998 88 0% 84 19% 23 47.8% probably_damaging(0.999) tolerated(0.56) deleterious(0.497) HMMPfam_Ank,superfamily_ANK HDAC4 9759 genome.wustl.edu 37 2 239976475 239976475 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006037.3 -1 reviewed p.R1015C 0.982 278 0% 380 19.7% 3 33.3% benign(0.004) tolerated(0.06) neutral(0.323) superfamily_Arginase/deacetylase HDAC4 9759 genome.wustl.edu 37 2 240005917 240005917 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006037.3 -1 reviewed p.S817 0.673 55 0% 56 25% 3 0% - - - HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase NDUFA10 4705 genome.wustl.edu 37 2 240954217 240954217 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004544.3 -1 reviewed p.L203P 1.000 230 0% 207 22.7% 146 33.5% probably_damaging(0.966) deleterious(0) deleterious(0.853) HMMPfam_dNK,superfamily_SSF52540 NDUFA10 4705 genome.wustl.edu 37 2 240960685 240960685 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004544.3 -1 reviewed p.R130H 1.000 194 0% 230 11.7% 99 15.1% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_SSF52540 OR6B3 150681 genome.wustl.edu 37 2 240984525 240984525 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173351.1 -1 provisional p.L322R 0.000 49 0% 76 27.6% 0 - benign(0.23) deleterious(0) neutral(0.468) superfamily_SSF81321 OR6B3 150681 genome.wustl.edu 37 2 240985226 240985226 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173351.1 -1 provisional p.Q88H 0.017 248 0% 198 14.6% 0 - benign(0.011) tolerated(0.14) neutral(0.250) HMMPfam_7tm_1,superfamily_SSF81321 GPC1 2817 genome.wustl.edu 37 2 241404337 241404337 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002081.2 +1 reviewed p.R360L 0.001 31 0% 25 32% 46 28.2% benign(0.403) tolerated(0.47) neutral(0.141) HMMPfam_Glypican RNPEPL1 57140 genome.wustl.edu 37 2 241517197 241517197 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018226.3 +1 provisional p.T458M 0.000 19 0% 18 22.2% 143 39.1% benign(0.085) deleterious(0.03) neutral(0.370) NULL CAPN10 11132 genome.wustl.edu 37 2 241531372 241531372 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023083.2 +1 reviewed p.L165M 0.842 58 0% 56 26.8% 16 25% unknown(0) deleterious(0) - HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases CAPN10 11132 genome.wustl.edu 37 2 241531519 241531519 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000270361 +1 known p.P210L 0.908 21 0% 24 41.7% 6 50% unknown(0) deleterious(0) - HMMSmart_CysPc CAPN10 11132 genome.wustl.edu 37 2 241533435 241533435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000270361 +1 known p.A264T 0.632 52 0% 60 25% 4 25% unknown(0) - - NULL AQP12B 653437 genome.wustl.edu 37 2 241621970 241621970 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102467.1 -1 validated p.T95 0.005 74 0% 65 16.9% 0 - - - - superfamily_MIP KIF1A 547 genome.wustl.edu 37 2 241660404 241660404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004321.4 -1 reviewed p.G1498R 0.314 60 0% 53 26.4% 5 40% probably_damaging(0.999) tolerated(0.14) deleterious(0.740) NULL KIF1A 547 genome.wustl.edu 37 2 241660425 241660425 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004321.4 -1 reviewed p.D1491N 1.000 63 0% 68 27.9% 4 50% possibly_damaging(0.888) tolerated(0.18) neutral(0.403) NULL KIF1A 547 genome.wustl.edu 37 2 241661268 241661268 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004321.4 -1 reviewed p.E1466K 1.000 132 0% 114 19.3% 8 37.5% benign(0.028) tolerated(0.43) neutral(0.015) NULL KIF1A 547 genome.wustl.edu 37 2 241679550 241679550 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004321.4 -1 reviewed p.R1175* 1.000 71 0% 64 20.3% 3 66.6% - - - NULL KIF1A 547 genome.wustl.edu 37 2 241684863 241684863 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004321.4 -1 reviewed p.G1048D 1.000 218 0% 159 21.4% 3 66.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL AGXT 189 genome.wustl.edu 37 2 241810793 241810793 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000030.2 +1 reviewed p.L151 0.997 52 0% 41 14.6% 0 - - - - HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases AGXT 189 genome.wustl.edu 37 2 241816983 241816983 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000030.2 +1 reviewed p.R292 0.196 27 0% 18 38.9% 0 - - - - HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases MTERFD2 130916 genome.wustl.edu 37 2 242035461 242035461 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182501.3 -1 validated p.D366 0.086 1025 0% 798 25.2% 46 52.1% - - - NULL MTERFD2 130916 genome.wustl.edu 37 2 242038945 242038945 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182501.3 -1 validated p.S129L 0.740 168 0% 199 23.1% 10 30% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_mTERF PASK 23178 genome.wustl.edu 37 2 242051780 242051780 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015148.2 -1 validated p.I1136 0.012 149 0% 144 25.7% 11 100% - - - HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase HDLBP 3069 genome.wustl.edu 37 2 242174616 242174616 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005336.3 -1 validated p.G1022C 1.000 84 0% 73 19.2% 359 38.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791 HDLBP 3069 genome.wustl.edu 37 2 242196045 242196045 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373292 -1 known p.P87S 1.000 487 0% 292 18.8% 90 34.4% - - - HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) FARP2 9855 genome.wustl.edu 37 2 242422884 242422884 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014808.2 +1 validated p.F756Y 1.000 209 0% 93 18.3% 7 14.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like D2HGDH 728294 genome.wustl.edu 37 2 242695407 242695407 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000445308 +1 known p.T227M 0.677 12 0% 19 31.6% 44 36.3% - - - HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain PDCD1 5133 genome.wustl.edu 37 2 242794865 242794865 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005018.2 -1 reviewed p.R115H 0.398 59 0% 48 20.8% 13 0% probably_damaging(0.981) tolerated(0.06) deleterious(0.748) HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin LOC728323 728323 genome.wustl.edu 37 2 243056893 243056893 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024437.1 +1 validated NULL 1.000 121 0% 69 11.6% 0 - - - - - CHL1 10752 genome.wustl.edu 37 3 369897 369897 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006614.2 +1 reviewed p.R82Q 0.996 394 0% 213 45.5% 0 - benign(0.235) deleterious(0) neutral(0.468) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin CHL1 10752 genome.wustl.edu 37 3 383756 383756 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006614.2 +1 reviewed p.V224F 1.000 165 0% 103 18.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00409,superfamily_Immunoglobulin CNTN6 27255 genome.wustl.edu 37 3 1189744 1189744 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014461.2 +1 reviewed p.A18T 0.945 449 0% 232 15.9% 0 - benign(0.327) tolerated(0.06) neutral(0.425) NULL CNTN6 27255 genome.wustl.edu 37 3 1369156 1369156 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014461.2 +1 reviewed p.E367* 0.999 332 0% 50 16% 0 - - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 CNTN6 27255 genome.wustl.edu 37 3 1424985 1424985 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014461.2 +1 reviewed p.L804 0.951 361 0% 233 19.7% 0 - - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like CNTN4 152330 genome.wustl.edu 37 3 2787346 2787346 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175607.1 +1 reviewed p.T108I 1.000 305 0% 165 10.3% 0 - possibly_damaging(0.886) tolerated(0.06) deleterious(0.669) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin CNTN4 152330 genome.wustl.edu 37 3 2942455 2942455 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175607.1 +1 reviewed p.P343S 1.000 322 0.3% 209 21.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin CNTN4 152330 genome.wustl.edu 37 3 3078983 3078983 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175607.1 +1 reviewed p.P688H 1.000 141 0% 39 10.3% 0 - possibly_damaging(0.586) deleterious(0) deleterious(0.647) superfamily_Fibronectin type III CNTN4 152330 genome.wustl.edu 37 3 3081795 3081795 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175607.1 +1 reviewed p.I746 0.986 290 0% 91 18.7% 2 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CNTN4 152330 genome.wustl.edu 37 3 3081828 3081828 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175607.1 +1 reviewed p.A757 1.000 260 0.4% 69 14.5% 3 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III TRNT1 51095 genome.wustl.edu 37 3 3189343 3189343 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182916.2 +1 validated p.D338Y 0.943 126 0% 134 18.7% 10 20% possibly_damaging(0.785) deleterious(0.02) deleterious(0.677) superfamily_Poly A polymerase C-terminal region-like SUMF1 285362 genome.wustl.edu 37 3 4494673 4494673 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182760.3 -1 reviewed p.D111Y 1.000 213 0% 167 22.8% 18 44.4% possibly_damaging(0.721) deleterious(0) deleterious(0.706) HMMPfam_DUF323 ITPR1 3708 genome.wustl.edu 37 3 4726861 4726861 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099952.2 +1 reviewed p.L1216 1.000 102 0% 45 11.1% 1 0% - - - HMMPfam_RYDR_ITPR GRM7 2917 genome.wustl.edu 37 3 6903450 6903450 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181874.2 +1 reviewed p.A125 1.000 101 0% 126 27% 0 - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 GRM7 2917 genome.wustl.edu 37 3 7620310 7620310 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181874.2 +1 reviewed p.R573* 1.000 216 0.5% 109 22.9% 0 - - - - NULL LMCD1 29995 genome.wustl.edu 37 3 8590323 8590323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014583.2 +1 reviewed p.R153C 1.000 76 0% 37 18.9% 11 27.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PET OXTR 5021 genome.wustl.edu 37 3 8794732 8794732 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000916.3 -1 reviewed p.N367K 1.000 62 0% 46 28.3% 0 - unknown(0) tolerated(0.38) - superfamily_Family A G protein-coupled receptor-like SRGAP3 9901 genome.wustl.edu 37 3 9166519 9166519 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014850.2 -1 validated p.Q50H 1.000 97 0% 117 24.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_FCH,HMMSmart_SM00055 SETD5 55209 genome.wustl.edu 37 3 9486910 9486910 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080517.1 +1 provisional p.E456K 0.978 429 0% 164 20.1% 5 20% benign(0.025) tolerated(0.16) neutral(0.060) NULL SETD5 55209 genome.wustl.edu 37 3 9517666 9517666 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080517.1 +1 provisional p.A1407V 1.000 104 0% 48 29.2% 40 25% benign(0.001) deleterious(0) neutral(0.445) NULL MTMR14 64419 genome.wustl.edu 37 3 9730665 9730665 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077525.2 +1 reviewed p.S444 0.250 46 0% 70 21.4% 68 38.2% - - - NULL BRPF1 7862 genome.wustl.edu 37 3 9780979 9780979 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003694.1 +1 reviewed p.A299V 1.000 102 0% 76 28.9% 9 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD BRPF1 7862 genome.wustl.edu 37 3 9781215 9781215 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003694.1 +1 reviewed p.P378S 1.000 74 0% 62 22.6% 11 18.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL BRPF1 7862 genome.wustl.edu 37 3 9788073 9788073 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003694.1 +1 reviewed p.E1138 1.000 190 0% 216 26.9% 23 17.3% - - - HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748 CAMK1 8536 genome.wustl.edu 37 3 9803388 9803388 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000421120 -1 known p.R8* 0.434 242 0% 200 25% 44 36.3% - - - HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TTLL3 26140 genome.wustl.edu 37 3 9860507 9860507 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000310252 +1 known p.G100* 1.000 263 0% 164 22% 3 66.6% benign(0.032) tolerated(1) neutral(0.002) NULL JAGN1 84522 genome.wustl.edu 37 3 9934963 9934963 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032492.3 +1 validated p.L152 0.991 441 0.2% 294 18.4% 120 36.6% - - - HMMPfam_DUF1352 IL17RC 84818 genome.wustl.edu 37 3 9959183 9959183 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153461.2 +1 reviewed p.V62I 0.828 193 0% 252 19.4% 0 - benign(0.003) tolerated(0.1) neutral(0.286) NULL FANCD2 2177 genome.wustl.edu 37 3 10134990 10134990 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033084.3 +1 reviewed p.L1291M 1.000 839 0% 389 22.1% 20 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FANCD2 2177 genome.wustl.edu 37 3 10142924 10142924 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018115.1 +1 reviewed p.E1445A 0.929 587 0% 457 17.1% 27 22.2% possibly_damaging(0.875) - - NULL C3orf24 115795 genome.wustl.edu 37 3 10146027 10146027 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173472.1 -1 validated p.Q144 1.000 288 0% 272 21% 0 - - - - NULL IRAK2 3656 genome.wustl.edu 37 3 10268100 10268100 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001570.3 +1 reviewed p.R419* 0.582 280 0% 265 21.5% 1 0% - - - superfamily_Kinase_like SLC6A1 6529 genome.wustl.edu 37 3 11059079 11059079 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003042.3 +1 validated p.A61V 1.000 98 0% 109 14.7% 0 - probably_damaging(0.966) tolerated(0.86) neutral(0.408) HMMPfam_SNF SLC6A1 6529 genome.wustl.edu 37 3 11061987 11061987 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003042.3 +1 validated p.S187N 1.000 142 0% 124 26.6% 0 - benign(0.005) deleterious(0.02) neutral(0.383) HMMPfam_SNF TSEN2 80746 genome.wustl.edu 37 3 12533698 12533698 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145392.1 +1 reviewed p.L85M 0.976 313 0% 220 21.4% 9 33.3% probably_damaging(1) tolerated(0.2) deleterious(0.549) NULL RAF1 5894 genome.wustl.edu 37 3 12650274 12650274 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002880.3 -1 reviewed p.R191I 1.000 276 0% 203 26.6% 42 50% benign(0.286) tolerated(0.19) neutral(0.138) NULL CAND2 23066 genome.wustl.edu 37 3 12854863 12854863 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012298.2 +1 validated p.E235* 1.000 658 0% 487 21.6% 1 0% - - - superfamily_ARM-type_fold IQSEC1 9922 genome.wustl.edu 37 3 12956624 12956624 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014869.4 -1 validated p.L738M 0.998 99 0% 84 21.4% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_PH domain-like NUP210 23225 genome.wustl.edu 37 3 13363788 13363788 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024923.2 -1 reviewed p.T1607I 0.972 194 0% 108 16.7% 63 33.3% benign(0.159) deleterious(0.02) neutral(0.397) NULL FBLN2 2199 genome.wustl.edu 37 3 13659623 13659623 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004019.1 +1 reviewed p.E593* 0.857 42 0% 42 16.7% 14 7.1% - - - NULL FBLN2 2199 genome.wustl.edu 37 3 13663337 13663337 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004019.1 +1 reviewed p.L740M 0.905 180 0% 163 13.5% 1 0% probably_damaging(0.961) tolerated(0.13) deleterious(0.657) HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin FBLN2 2199 genome.wustl.edu 37 3 13679275 13679275 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004019.1 +1 reviewed p.A1184 1.000 50 0% 57 22.8% 27 0% - - - NULL TMEM43 79188 genome.wustl.edu 37 3 14180710 14180710 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024334.2 +1 reviewed p.S305T 0.935 156 0.6% 100 29% 39 56.4% benign(0) tolerated(0.6) neutral(0.004) HMMPfam_DUF1625 TMEM43 79188 genome.wustl.edu 37 3 14180779 14180779 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024334.2 +1 reviewed p.R328W 0.932 148 0% 119 26.1% 48 41.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_DUF1625 LSM3 27258 genome.wustl.edu 37 3 14239590 14239590 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000306024 +1 known p.V95I 0.817 459 0% 193 24.4% 259 38.2% possibly_damaging(0.532) tolerated(0.81) neutral(0.180) HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins GRIP2 80852 genome.wustl.edu 37 3 14537957 14537957 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080423.1 -1 provisional p.L1029M 1.000 57 0% 62 16.1% 0 - - - - superfamily_PDZ domain-like GRIP2 80852 genome.wustl.edu 37 3 14545152 14545152 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080423.1 -1 provisional p.E965D 1.000 32 0% 47 25.5% 0 - - - - NULL GRIP2 80852 genome.wustl.edu 37 3 14558622 14558622 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080423.1 -1 provisional p.R517Q 0.984 579 0% 369 22.5% 1 0% - - - NULL C3orf19 51244 genome.wustl.edu 37 3 14712430 14712430 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016474.4 +1 validated p.R378K 0.996 63 0% 38 36.8% 14 21.4% benign(0.08) tolerated(0.54) neutral(0.013) NULL C3orf20 84077 genome.wustl.edu 37 3 14725751 14725751 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032137.4 +1 validated p.G163C 0.970 346 0% 223 24.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FGD5 152273 genome.wustl.edu 37 3 14862067 14862067 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152536.3 +1 validated p.V497I 1.000 53 0% 59 23.7% 4 0% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL FGD5 152273 genome.wustl.edu 37 3 14863053 14863053 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000457774 +1 known p.L39F 1.000 60 0% 99 19.2% 1 0% - - - NULL FGD5 152273 genome.wustl.edu 37 3 14958761 14958761 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152536.3 +1 validated p.N1137 0.897 150 0% 125 16% 7 0% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like MRPS25 64432 genome.wustl.edu 37 3 15093974 15093974 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022497.3 -1 reviewed p.A166T 0.000 197 0% 142 23.2% 54 20.3% benign(0) tolerated(0.54) neutral(0.007) NULL MRPS25 64432 genome.wustl.edu 37 3 15094928 15094928 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022497.3 -1 reviewed p.K96N 0.712 446 0% 447 20.1% 49 55.1% benign(0.011) tolerated(0.17) neutral(0.059) NULL MRPS25 64432 genome.wustl.edu 37 3 15100934 15100934 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022497.3 -1 reviewed p.W61* 1.000 287 0.3% 305 23.3% 45 24.4% - - - HMMPfam_L51_S25_CI-B8 ZFYVE20 64145 genome.wustl.edu 37 3 15115883 15115883 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022340.2 -1 validated p.K587N 0.000 237 0% 154 22.7% 9 22.2% benign(0.026) tolerated(0.06) neutral(0.324) NULL CAPN7 23473 genome.wustl.edu 37 3 15262445 15262445 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014296.2 +1 reviewed p.A199T 0.998 193 0% 96 22.9% 15 40% benign(0.007) tolerated(0.43) neutral(0.013) NULL CAPN7 23473 genome.wustl.edu 37 3 15274172 15274172 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415565 +1 known p.Q131* 0.743 237 0% 115 17.4% 15 66.6% - - - HMMSmart_SM00230,superfamily_Cysteine proteinases METTL6 131965 genome.wustl.edu 37 3 15467851 15467851 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152396.2 -1 validated p.F56L 1.000 456 0% 415 13.5% 15 40% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_S-adenosyl-L-methionine-dependent methyltransferases HACL1 26061 genome.wustl.edu 37 3 15624437 15624437 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012260.2 -1 validated p.T205M 0.000 188 0.5% 93 20.4% 13 23% benign(0) tolerated(0.05) neutral(0.345) HMMPfam_TPP_enzyme_M,superfamily_SSF52467 BTD 686 genome.wustl.edu 37 3 15642991 15642991 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000417015 +1 known p.S27I 0.000 91 0% 114 21.1% 14 35.7% unknown(0) - - NULL BTD 686 genome.wustl.edu 37 3 15677129 15677129 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000060.2 +1 reviewed p.E81D 0.136 205 0% 75 20% 15 40% benign(0.009) tolerated(0.16) neutral(0.060) HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase BTD 686 genome.wustl.edu 37 3 15686740 15686740 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000060.2 +1 reviewed p.A459 0.998 272 0% 101 9.9% 13 38.4% - - - NULL ANKRD28 23243 genome.wustl.edu 37 3 15721007 15721007 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015199.2 -1 provisional p.A788D 1.000 359 0.3% 117 29.1% 17 41.1% benign(0.006) tolerated(0.08) neutral(0.300) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ANKRD28 23243 genome.wustl.edu 37 3 15755111 15755111 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015199.2 -1 provisional p.T341 0.427 235 0% 45 26.7% 8 25% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat GALNTL2 117248 genome.wustl.edu 37 3 16216835 16216835 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054110.4 +1 validated p.L59 1.000 216 0% 179 19% 0 - - - - NULL GALNTL2 117248 genome.wustl.edu 37 3 16216907 16216907 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054110.4 +1 validated p.G83 0.984 133 0% 129 15.5% 0 - - - - NULL DPH3 285381 genome.wustl.edu 37 3 16302333 16302333 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206831.2 -1 reviewed p.Q63* 1.000 411 0% 260 15.8% 32 18.7% - - - NULL RFTN1 23180 genome.wustl.edu 37 3 16419458 16419458 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015150.1 -1 validated p.A198V 0.001 197 0% 115 20.9% 16 18.7% benign(0.001) tolerated(0.6) neutral(0.004) NULL PLCL2 23228 genome.wustl.edu 37 3 17052197 17052197 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419842 +1 known p.P71H 1.000 274 0% 67 17.9% 4 0% - - - HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases PLCL2 23228 genome.wustl.edu 37 3 17056367 17056367 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419842 +1 known p.R612Q 0.021 416 0% 105 31.4% 7 57.1% - - - NULL TBC1D5 9779 genome.wustl.edu 37 3 17226642 17226642 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134381.1 -1 validated p.A626V 1.000 243 0% 55 10.9% 7 0% probably_damaging(0.999) tolerated(0.17) deleterious(0.549) NULL TBC1D5 9779 genome.wustl.edu 37 3 17550098 17550098 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134381.1 -1 validated e1-1 0.241 183 0% 83 26.5% 0 - - - - - KCNH8 131096 genome.wustl.edu 37 3 19492884 19492884 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144633.2 +1 reviewed p.L605 1.000 161 0% 61 23% 0 - - - - HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding EFHB 151651 genome.wustl.edu 37 3 19924193 19924193 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144715.3 -1 validated p.R726Q 0.998 277 0% 105 21.9% 0 - probably_damaging(1) tolerated(0.16) deleterious(0.559) superfamily_EF-hand EFHB 151651 genome.wustl.edu 37 3 19940338 19940338 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144715.3 -1 validated e8-1 1.000 348 0% 160 13.1% 0 - - - - - RAB5A 5868 genome.wustl.edu 37 3 19992491 19992491 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004162.4 +1 validated p.S34L 1.000 337 0% 355 23.9% 30 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases KAT2B 8850 genome.wustl.edu 37 3 20153107 20153107 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003884.4 +1 reviewed p.V291M 1.000 241 0% 91 22% 7 71.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PCAF_N ZNF385D 79750 genome.wustl.edu 37 3 21552505 21552505 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024697.2 -1 validated p.A96V 1.000 499 0% 128 19.5% 0 - benign(0.062) deleterious(0.02) neutral(0.387) HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2 RPL15 6138 genome.wustl.edu 37 3 23959375 23959375 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002948.2 +1 reviewed p.E9K 1.000 98 0% 77 19.5% 753 6.9% benign(0.185) deleterious(0.01) neutral(0.423) HMMPfam_Ribosomal_L15e,superfamily_Ribosomal proteins L23 and L15e RPL15 6138 genome.wustl.edu 37 3 23959935 23959935 + Nonsense_Mutation SNP C C A rs192491916 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002948.2 +1 reviewed p.Y59* 0.978 483 0% 345 21.2% 685 7.7% - - - HMMPfam_Ribosomal_L15e,PatternScan_RIBOSOMAL_L15E,superfamily_Ribosomal proteins L23 and L15e THRB 7068 genome.wustl.edu 37 3 24169179 24169179 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000461.4 -1 reviewed p.V319M 1.000 170 0% 55 21.8% 0 - benign(0.008) tolerated(0.11) neutral(0.272) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain TOP2B 7155 genome.wustl.edu 37 3 25656949 25656949 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001068.2 -1 reviewed p.E1155D 1.000 81 0% 62 19.4% 67 40.2% benign(0.002) tolerated(1) - HMMPfam_DNA_topoisoIV,HMMSmart_TOP4c,superfamily_Topo_IIA_cen NGLY1 55768 genome.wustl.edu 37 3 25770676 25770676 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018297.3 -1 reviewed p.G520D 1.000 478 0% 166 16.3% 37 35.1% probably_damaging(1) tolerated(0.2) deleterious(0.549) HMMSmart_SM00613 OXSM 54995 genome.wustl.edu 37 3 25831628 25831628 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026937.1 +1 reviewed NULL 0.000 7 0.000 15 0.400 4 75% - - - - OXSM 54995 genome.wustl.edu 37 3 25833439 25833439 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017897.2 +1 reviewed p.D310N 1.000 107 0% 87 19.5% 22 4.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ketoacyl-synt_C,superfamily_Thiolase-like LRRC3B 116135 genome.wustl.edu 37 3 26751178 26751178 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052953.2 +1 provisional p.D5 1.000 426 0% 116 26.7% 1 100% - - - NULL NEK10 152110 genome.wustl.edu 37 3 27157454 27157454 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000396636 -1 known p.G1149 1.000 216 0% 95 17.9% 2 0% - - - NULL NEK10 152110 genome.wustl.edu 37 3 27173423 27173423 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000396636 -1 known p.S1067F 1.000 373 0% 147 17.7% 0 - probably_damaging(0.995) tolerated(0.2) deleterious(0.507) NULL NEK10 152110 genome.wustl.edu 37 3 27297814 27297814 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199347.2 -1 validated p.S688F 1.000 416 0% 174 17.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SLC4A7 9497 genome.wustl.edu 37 3 27450933 27450933 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003615.3 -1 validated p.A610T 1.000 206 0% 92 29.3% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HCO3_cotransp SLC4A7 9497 genome.wustl.edu 37 3 27473161 27473161 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003615.3 -1 validated e7-1 1.000 117 0% 46 15.2% 0 - - - - - SLC4A7 9497 genome.wustl.edu 37 3 27478949 27478949 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003615.3 -1 validated p.D111Y 1.000 666 0% 245 20% 0 - possibly_damaging(0.908) deleterious(0.05) deleterious(0.707) superfamily_Phoshotransferase/anion transport protein RBMS3 27303 genome.wustl.edu 37 3 29476239 29476239 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003793.2 +1 reviewed p.S27 1.000 330 0% 116 19% 0 - - - - superfamily_RNA-binding domain RBD TGFBR2 7048 genome.wustl.edu 37 3 30713602 30713602 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024847.2 +1 reviewed p.T334 0.009 123 0% 59 20.3% 25 24% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZNF860 344787 genome.wustl.edu 37 3 32030839 32030839 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001137674.1 +1 provisional p.E90K 0.781 399 0% 269 20.4% 0 - benign(0.114) tolerated(0.43) neutral(0.022) NULL CCR4 1233 genome.wustl.edu 37 3 32995018 32995018 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005508.4 +1 reviewed p.K35T 0.575 570 0% 192 20.3% 0 - benign(0.302) deleterious(0.02) deleterious(0.477) superfamily_Family A G protein-coupled receptor-like GLB1 2720 genome.wustl.edu 37 3 33038809 33038809 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000404.2 -1 reviewed p.L588I 1.000 57 0% 24 29.2% 115 42.6% possibly_damaging(0.929) deleterious(0.04) deleterious(0.725) NULL SUSD5 26032 genome.wustl.edu 37 3 33195474 33195474 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015551.1 -1 validated p.S217Y 0.996 103 0% 57 24.6% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL FBXL2 25827 genome.wustl.edu 37 3 33414830 33414830 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012157.3 +1 reviewed p.S146 1.000 356 0% 130 20% 5 60% - - - superfamily_SSF52047 FBXL2 25827 genome.wustl.edu 37 3 33420200 33420200 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012157.3 +1 reviewed p.Q306H 1.000 432 0.2% 165 23.6% 9 33.3% benign(0.003) tolerated(0.87) neutral(0.001) superfamily_SSF52047 UBP1 7342 genome.wustl.edu 37 3 33451062 33451062 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128161.1 -1 validated p.R196Q 1.000 287 0% 90 27.8% 22 45.4% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_CP2 UBP1 7342 genome.wustl.edu 37 3 33453093 33453093 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128161.1 -1 validated p.R179C 1.000 378 0% 138 19.6% 28 46.4% benign(0.02) tolerated(0.16) neutral(0.060) HMMPfam_CP2 CLASP2 23122 genome.wustl.edu 37 3 33557525 33557525 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015097.1 -1 validated p.P1367H 1.000 485 0.4% 201 21.9% 11 9% benign(0.024) deleterious(0) neutral(0.446) superfamily_ARM repeat CLASP2 23122 genome.wustl.edu 37 3 33586203 33586203 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000480385 -1 known p.W158* 1.000 338 0% 191 10.5% 8 12.5% possibly_damaging(0.49) tolerated(0.06) deleterious(0.486) NULL CLASP2 23122 genome.wustl.edu 37 3 33602406 33602406 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015097.1 -1 validated p.L942I 1.000 506 0.2% 319 19.7% 2 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ARM repeat CLASP2 23122 genome.wustl.edu 37 3 33614671 33614671 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015097.1 -1 validated p.S877Y 1.000 425 0% 395 24.3% 4 50% possibly_damaging(0.946) deleterious(0) deleterious(0.835) superfamily_ARM repeat CLASP2 23122 genome.wustl.edu 37 3 33648900 33648900 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015097.1 -1 validated p.A501D 1.000 267 0% 128 22.7% 1 0% benign(0.406) tolerated(0.09) neutral(0.427) superfamily_ARM repeat CLASP2 23122 genome.wustl.edu 37 3 33650119 33650119 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015097.1 -1 validated e14-1 1.000 193 0% 71 22.5% 0 - - - - - ARPP21 10777 genome.wustl.edu 37 3 35763197 35763197 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016300.4 +1 validated p.D366Y 1.000 61 0% 31 35.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TRANK1 9881 genome.wustl.edu 37 3 36874840 36874840 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014831.2 -1 provisional p.E1484 0.005 36 0% 30 23.3% 5 0% - - - NULL MLH1 4292 genome.wustl.edu 37 3 37090094 37090094 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000249.3 +1 reviewed p.A661 1.000 291 0% 77 18.2% 68 39.7% - - - NULL GOLGA4 2803 genome.wustl.edu 37 3 37323500 37323500 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002078.4 +1 reviewed p.V72M 0.000 164 0% 241 19.9% 1 0% benign(0) tolerated(0.74) neutral(0.002) NULL GOLGA4 2803 genome.wustl.edu 37 3 37323542 37323542 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002078.4 +1 reviewed p.R86W 1.000 221 0.5% 279 26.5% 4 75% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GOLGA4 2803 genome.wustl.edu 37 3 37368527 37368527 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002078.4 +1 reviewed p.A1717V 0.000 123 0% 40 22.5% 17 29.4% benign(0.001) tolerated(0.33) neutral(0.024) NULL ITGA9 3680 genome.wustl.edu 37 3 37544778 37544778 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002207.2 +1 reviewed p.N241S 0.997 483 0% 181 11.6% 0 - benign(0) tolerated(0.54) neutral(0.007) superfamily_SSF69318 ITGA9 3680 genome.wustl.edu 37 3 37791984 37791984 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002207.2 +1 reviewed p.G822E 0.899 325 0% 246 22.8% 1 0% probably_damaging(0.999) tolerated(0.1) deleterious(0.777) HMMPfam_Integrin_alpha2,superfamily_SSF69179 CTDSPL 10217 genome.wustl.edu 37 3 37988590 37988590 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008392.1 +1 validated p.S41I 1.000 72 0% 61 11.5% 6 0% possibly_damaging(0.893) deleterious(0) deleterious(0.796) NULL DLEC1 9940 genome.wustl.edu 37 3 38138686 38138686 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007337.2 +1 reviewed p.S785N 1.000 141 0% 90 23.3% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL DLEC1 9940 genome.wustl.edu 37 3 38139319 38139319 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007337.2 +1 reviewed p.R884 0.008 83 0% 42 26.2% 1 100% - - - NULL DLEC1 9940 genome.wustl.edu 37 3 38156533 38156533 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007337.2 +1 reviewed p.S1282Y 1.000 122 0.8% 121 20.7% 0 - benign(0.114) deleterious(0.02) neutral(0.392) NULL DLEC1 9940 genome.wustl.edu 37 3 38163144 38163144 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007337.2 +1 reviewed p.A1631V 0.694 86 0% 48 20.8% 3 33.3% benign(0.014) tolerated(0.68) neutral(0.003) NULL ACAA1 30 genome.wustl.edu 37 3 38164585 38164585 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001607.3 -1 reviewed p.G410R 0.997 97 1% 83 14.5% 68 17.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Thiolase_C,PatternScan_THIOLASE_3,superfamily_Thiolase-like OXSR1 9943 genome.wustl.edu 37 3 38271862 38271862 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005109.2 +1 reviewed p.E298* 1.000 105 1% 51 21.6% 5 0% - - - superfamily_Kinase_like OXSR1 9943 genome.wustl.edu 37 3 38278368 38278368 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005109.2 +1 reviewed p.K330N 1.000 427 0% 104 29.8% 7 0% possibly_damaging(0.697) deleterious(0) deleterious(0.695) NULL SLC22A14 9389 genome.wustl.edu 37 3 38354513 38354513 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004803.3 +1 validated p.W323L 1.000 152 0% 228 25.4% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MFS_1,superfamily_MFS general substrate transporter SLC22A14 9389 genome.wustl.edu 37 3 38355250 38355250 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004803.3 +1 validated p.S399I 0.000 132 0% 157 21.7% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_MFS_1,superfamily_MFS general substrate transporter XYLB 9942 genome.wustl.edu 37 3 38454498 38454498 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005108.3 +1 reviewed p.P535 0.000 184 1.1% 101 19.8% 1 0% - - - NULL EXOG 9941 genome.wustl.edu 37 3 38537967 38537967 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005107.3 +1 reviewed p.Q37* 0.145 57 0% 60 23.3% 3 66.6% - - - NULL EXOG 9941 genome.wustl.edu 37 3 38565745 38565745 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005107.3 +1 reviewed p.K333N 0.973 141 0% 132 22.7% 3 33.3% possibly_damaging(0.904) deleterious(0.02) deleterious(0.742) NULL SCN5A 6331 genome.wustl.edu 37 3 38622738 38622738 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099404.1 -1 reviewed p.R971H 1.000 43 0% 61 37.7% 0 - benign(0.003) tolerated(0.18) neutral(0.056) HMMPfam_Na_trans_assoc SCN5A 6331 genome.wustl.edu 37 3 38627376 38627376 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099404.1 -1 reviewed p.Y865H 1.000 287 0% 217 10.1% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN5A 6331 genome.wustl.edu 37 3 38674544 38674544 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099404.1 -1 reviewed p.P85 0.997 99 0% 72 19.4% 0 - - - - NULL SCN10A 6336 genome.wustl.edu 37 3 38738860 38738860 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006514.2 -1 validated p.L1951M 0.001 249 0% 69 33.3% 0 - benign(0.01) tolerated(0.11) neutral(0.272) NULL SCN10A 6336 genome.wustl.edu 37 3 38755545 38755545 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006514.2 -1 validated p.K1236N 0.649 206 0% 89 21.3% 0 - benign(0.002) tolerated(1) - HMMPfam_Ion_trans,superfamily_SSF81324 SCN10A 6336 genome.wustl.edu 37 3 38798274 38798274 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006514.2 -1 validated p.A394D 1.000 374 0% 145 32.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_SSF81324 SCN10A 6336 genome.wustl.edu 37 3 38830528 38830528 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006514.2 -1 validated e3-1 0.999 353 0% 98 23.5% 0 - - - - - SCN11A 11280 genome.wustl.edu 37 3 38888478 38888478 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014139.2 -1 validated p.G1695S 1.000 351 0% 95 43.2% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SCN11A 11280 genome.wustl.edu 37 3 38946722 38946722 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014139.2 -1 validated p.A522S 0.996 378 0% 135 17% 1 0% benign(0.127) tolerated(0.22) neutral(0.053) NULL TTC21A 199223 genome.wustl.edu 37 3 39170391 39170391 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105513.2 +1 validated p.L630 1.000 93 0% 72 15.3% 2 0% - - - superfamily_TPR-like TTC21A 199223 genome.wustl.edu 37 3 39172228 39172228 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105513.2 +1 validated p.G794R 0.863 248 0% 140 14.3% 0 - probably_damaging(0.995) tolerated(0.46) deleterious(0.470) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like CSRNP1 64651 genome.wustl.edu 37 3 39185730 39185730 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033027.3 -1 reviewed p.E226 1.000 60 0% 66 10.6% 17 41.1% - - - NULL XIRP1 165904 genome.wustl.edu 37 3 39227818 39227818 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194293.2 -1 provisional p.T1040M 0.000 56 0% 66 25.8% 0 - benign(0.036) tolerated(0.23) neutral(0.044) NULL CCR8 1237 genome.wustl.edu 37 3 39374407 39374407 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005201.3 +1 reviewed p.K195N 0.428 366 0% 50 22% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZNF619 285267 genome.wustl.edu 37 3 40529299 40529299 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145082.2 +1 validated p.C473Y 1.000 295 0% 195 21.5% 1 100% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF620 253639 genome.wustl.edu 37 3 40558067 40558067 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175888.2 +1 validated p.R328* 0.841 254 0% 171 22.8% 3 100% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF620 253639 genome.wustl.edu 37 3 40558110 40558110 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175888.2 +1 validated p.G342V 0.997 262 0% 187 23.5% 4 25% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF620 253639 genome.wustl.edu 37 3 40558252 40558252 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175888.2 +1 validated p.E389D 1.000 288 0% 198 20.7% 3 66.6% possibly_damaging(0.745) deleterious(0.03) deleterious(0.638) superfamily_C2H2 and C2HC zinc fingers ZNF621 285268 genome.wustl.edu 37 3 40574507 40574507 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098414.1 +1 validated p.R416C 0.000 388 0% 275 22.5% 7 85.7% probably_damaging(0.984) deleterious(0.01) deleterious(0.836) NULL CTNNB1 1499 genome.wustl.edu 37 3 41266924 41266924 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098209.1 +1 reviewed p.V199I 1.000 270 0% 88 17% 152 44.7% benign(0.001) tolerated(0.41) neutral(0.015) HMMSmart_SM00185,superfamily_ARM repeat CTNNB1 1499 genome.wustl.edu 37 3 41267193 41267193 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098209.1 +1 reviewed p.L259 0.886 200 0% 85 24.7% 141 44.6% - - - HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat VIPR1 7433 genome.wustl.edu 37 3 42569501 42569501 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004624.3 +1 validated p.R174 1.000 165 0% 168 20.8% 1 100% - - - HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like SEC22C 9117 genome.wustl.edu 37 3 42605155 42605155 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032970.2 -1 reviewed p.A69V 1.000 117 0% 47 19.1% 31 32.2% unknown(0) - - superfamily_SNARE-like NKTR 4820 genome.wustl.edu 37 3 42679071 42679071 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005385.3 +1 reviewed p.P625 0.989 138 0% 65 27.7% 5 60% - - - NULL ZBTB47 92999 genome.wustl.edu 37 3 42705300 42705300 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145166.3 +1 validated p.E207D 1.000 230 0% 216 22.7% 9 22.2% possibly_damaging(0.741) deleterious(0) deleterious(0.716) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 KBTBD5 131377 genome.wustl.edu 37 3 42727964 42727964 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152393.2 +1 validated p.K285T 0.329 137 0% 143 18.2% 0 - benign(0) tolerated(0.55) neutral(0.007) NULL LOC100287203 100287203 genome.wustl.edu 37 3 42730228 42730228 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342329.1 -1 model p.T123A 0.000 106 0% 128 20.3% 0 - - - - NULL HHATL 57467 genome.wustl.edu 37 3 42741285 42741285 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020707.3 -1 validated p.V47M 0.988 45 2.2% 41 36.6% 0 - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL CCDC13 152206 genome.wustl.edu 37 3 42775102 42775102 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144719.3 -1 validated e10-1 0.992 92 0% 53 18.9% 0 - - - - - CCDC13 152206 genome.wustl.edu 37 3 42799748 42799748 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144719.3 -1 validated p.M30I 1.000 725 0.3% 483 21.9% 1 100% possibly_damaging(0.891) deleterious(0) deleterious(0.795) NULL CYP8B1 1582 genome.wustl.edu 37 3 42916587 42916587 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004391.2 -1 reviewed p.S241Y 0.972 12 0% 20 30% 0 - probably_damaging(1) tolerated(0.19) deleterious(0.549) superfamily_Cytochrome P450 CYP8B1 1582 genome.wustl.edu 37 3 42916813 42916813 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004391.2 -1 reviewed p.E166K 0.990 87 0% 65 30.8% 0 - possibly_damaging(0.919) tolerated(0.19) neutral(0.419) superfamily_Cytochrome P450 ZNF662 389114 genome.wustl.edu 37 3 42950329 42950329 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134656.1 +1 validated p.R87* 0.917 266 0% 342 12.6% 0 - - - - HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF662 389114 genome.wustl.edu 37 3 42956072 42956072 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134656.1 +1 validated p.S195R 0.760 296 0% 248 10.5% 0 - benign(0.303) tolerated(0.53) neutral(0.102) NULL ZNF662 389114 genome.wustl.edu 37 3 42956792 42956792 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134656.1 +1 validated p.R435 0.320 121 0% 114 27.2% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ENSG00000240747 0 genome.wustl.edu 37 3 42982844 42982844 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000383748 +1 known p.V55L 0.959 120 0% 59 20.3% 1 0% possibly_damaging(0.916) deleterious(0) deleterious(0.811) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) SNRK 54861 genome.wustl.edu 37 3 43389740 43389740 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100594.1 +1 validated p.K663N 0.288 96 0% 91 22% 4 50% benign(0.026) deleterious(0) neutral(0.446) NULL ANO10 55129 genome.wustl.edu 37 3 43591297 43591297 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018075.3 -1 validated p.C571Y 1.000 314 0% 144 22.2% 30 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_DUF590 C3orf77 375337 genome.wustl.edu 37 3 44286130 44286130 + Missense_Mutation SNP C C A rs192970448 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145030.1 +1 validated p.A711D 0.436 115 0% 139 12.9% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_PAZ ZNF445 353274 genome.wustl.edu 37 3 44488954 44488954 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181489.5 -1 validated p.P737S 0.000 244 0% 138 23.9% 2 100% probably_damaging(1) tolerated(0.88) deleterious(0.500) superfamily_SSF57667 ZNF445 353274 genome.wustl.edu 37 3 44489142 44489142 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181489.5 -1 validated p.A674D 0.000 182 0% 88 15.9% 4 0% probably_damaging(0.979) deleterious(0.01) deleterious(0.828) NULL ZNF445 353274 genome.wustl.edu 37 3 44496683 44496683 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181489.5 -1 validated p.P120H 0.647 159 0% 93 32.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SCAN,HMMSmart_SCAN ZNF197 10168 genome.wustl.edu 37 3 44670818 44670818 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006991.3 +1 reviewed p.E58K 1.000 109 0.9% 121 30.6% 1 0% possibly_damaging(0.866) deleterious(0.02) deleterious(0.719) HMMPfam_SCAN,HMMSmart_SM00431 ZNF197 10168 genome.wustl.edu 37 3 44673681 44673681 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006991.3 +1 reviewed p.Q212R 1.000 448 0% 282 16.3% 6 16.6% benign(0.34) tolerated(0.89) neutral(0.107) superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF197 10168 genome.wustl.edu 37 3 44684352 44684352 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006991.3 +1 reviewed p.R577Q 0.881 132 0% 99 22.2% 0 - probably_damaging(1) tolerated(1) deleterious(0.500) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF197 10168 genome.wustl.edu 37 3 44685661 44685661 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006991.3 +1 reviewed p.F1013L 0.007 176 0% 145 23.4% 3 33.3% benign(0.189) tolerated(1) neutral(0.018) NULL ZNF502 91392 genome.wustl.edu 37 3 44763712 44763712 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134440.1 +1 validated p.C468Y 1.000 348 0% 197 18.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 KIF15 56992 genome.wustl.edu 37 3 44827903 44827903 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020242.2 +1 validated p.S159N 1.000 366 0% 185 22.7% 1 100% possibly_damaging(0.714) tolerated(0.42) neutral(0.272) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF15 56992 genome.wustl.edu 37 3 44852418 44852418 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020242.2 +1 validated p.G684 0.000 282 0% 180 17.8% 8 62.5% - - - NULL TGM4 7047 genome.wustl.edu 37 3 44943341 44943341 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003241.3 +1 validated p.D297N 0.977 241 0% 174 12.1% 0 - probably_damaging(1) tolerated(0.17) deleterious(0.559) HMMPfam_Transglut_core,HMMSmart_TGc,superfamily_SSF54001 TGM4 7047 genome.wustl.edu 37 3 44948451 44948451 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003241.3 +1 validated p.C362* 1.000 125 0% 99 26.3% 0 - - - - superfamily_SSF54001 TGM4 7047 genome.wustl.edu 37 3 44951829 44951829 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003241.3 +1 validated p.D525 0.001 131 0% 79 17.7% 0 - - - - superfamily_Transglut_C CLEC3B 7123 genome.wustl.edu 37 3 45077068 45077068 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003278.2 +1 validated p.Q87H 0.052 47 0% 58 19% 5 0% benign(0.392) tolerated(0.12) neutral(0.386) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like CDCP1 64866 genome.wustl.edu 37 3 45127154 45127154 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022842.3 -1 reviewed p.Q829H 0.001 321 0% 118 22.9% 33 60.6% benign(0) tolerated(0.39) neutral(0.016) NULL CDCP1 64866 genome.wustl.edu 37 3 45159961 45159961 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022842.3 -1 reviewed p.T79A 0.015 379 0% 120 15.8% 9 33.3% benign(0.059) tolerated(0.5) neutral(0.014) NULL SLC6A20 54716 genome.wustl.edu 37 3 45804534 45804534 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020208.3 -1 reviewed p.G445D 0.999 116 0% 69 24.6% 5 80% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF CCR9 10803 genome.wustl.edu 37 3 45943297 45943297 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031200.1 +1 reviewed p.S339 0.997 240 0% 141 14.9% 0 - - - - superfamily_Family A G protein-coupled receptor-like FYCO1 79443 genome.wustl.edu 37 3 46000898 46000898 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024513.2 -1 validated p.R1192W 1.000 56 0% 37 27% 16 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger FYCO1 79443 genome.wustl.edu 37 3 46008045 46008045 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024513.2 -1 validated p.A927 0.233 43 0% 46 17.4% 4 25% - - - NULL FYCO1 79443 genome.wustl.edu 37 3 46009535 46009535 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024513.2 -1 validated p.L431M 0.002 139 0% 139 25.9% 2 0% probably_damaging(1) deleterious(0.05) deleterious(0.845) NULL FYCO1 79443 genome.wustl.edu 37 3 46011226 46011226 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024513.2 -1 validated p.L191M 0.068 71 0% 65 13.8% 9 44.4% benign(0.001) tolerated(0.53) neutral(0.007) NULL XCR1 2829 genome.wustl.edu 37 3 46063199 46063199 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024644.1 -1 reviewed p.A81T 0.998 364 0% 415 19.3% 0 - benign(0.024) tolerated(0.4) neutral(0.017) HMMPfam_7tm_1,superfamily_SSF81321 CCR5 1234 genome.wustl.edu 37 3 46414972 46414972 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000579.3 +1 reviewed p.F193 0.013 91 0% 41 22% 7 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LTF 4057 genome.wustl.edu 37 3 46497290 46497290 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002343.2 -1 reviewed p.E165D 0.825 82 0% 79 29.1% 2 50% benign(0.137) deleterious(0.01) neutral(0.417) HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850 ALS2CL 259173 genome.wustl.edu 37 3 46717115 46717115 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147129.2 -1 validated p.E750* 0.875 71 0% 57 14% 6 16.6% - - - superfamily_VPS9 domain (Pfam 02204) TMIE 259236 genome.wustl.edu 37 3 46750731 46750731 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147196.2 +1 reviewed p.V109 1.000 134 0% 161 24.2% 1 0% - - - NULL PRSS45 377047 genome.wustl.edu 37 3 46785497 46785497 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199183.2 -1 validated p.V83F 0.008 171 0% 153 23.5% 0 - possibly_damaging(0.902) deleterious(0) deleterious(0.801) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys NBEAL2 23218 genome.wustl.edu 37 3 47040917 47040917 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015175.1 +1 validated p.V1219A 0.000 67 1.5% 76 23.7% 11 27.2% benign(0) tolerated(0.24) neutral(0.037) NULL SETD2 29072 genome.wustl.edu 37 3 47058711 47058711 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014159.6 -1 reviewed p.Y2523H 1.000 634 0% 430 14.2% 55 9% benign(0.051) tolerated(0.19) neutral(0.053) HMMPfam_SRI_2 SETD2 29072 genome.wustl.edu 37 3 47161746 47161746 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014159.6 -1 reviewed p.W1460* 1.000 339 0% 143 21% 4 0% - - - NULL SETD2 29072 genome.wustl.edu 37 3 47161835 47161835 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014159.6 -1 reviewed p.V1431I 0.003 548 0% 291 23.4% 3 0% benign(0) tolerated(0.62) neutral(0.004) NULL KIF9 64147 genome.wustl.edu 37 3 47282434 47282434 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134878.1 -1 validated p.R594Q 1.000 330 0% 216 22.7% 1 0% probably_damaging(0.969) tolerated(0.43) neutral(0.425) NULL SCAP 22937 genome.wustl.edu 37 3 47455570 47455570 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012235.2 -1 reviewed p.S1205I 1.000 166 0% 174 24.1% 204 45% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMSmart_SM00320,superfamily_WD40 repeat-like SCAP 22937 genome.wustl.edu 37 3 47464015 47464015 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012235.2 -1 reviewed p.E388K 1.000 102 0% 104 23.1% 49 30.6% probably_damaging(0.999) tolerated(0.2) deleterious(0.539) superfamily_Multidrug efflux transporter AcrB transmembrane domain C3orf75 54859 genome.wustl.edu 37 3 47552637 47552637 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031703.2 -1 validated e2+1 1.000 355 0% 281 20.3% 0 - - - - - DHX30 22907 genome.wustl.edu 37 3 47887679 47887679 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138615.2 +1 reviewed p.A373T 0.994 47 0% 42 31% 41 34.1% benign(0.008) tolerated(0.35) neutral(0.021) NULL MAP4 4134 genome.wustl.edu 37 3 47951098 47951098 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030884.3 -1 reviewed p.H212Y 0.000 256 0% 143 18.9% 0 - possibly_damaging(0.448) deleterious(0.01) deleterious(0.552) NULL PLXNB1 5364 genome.wustl.edu 37 3 48450803 48450803 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130082.1 -1 validated p.A2007 0.021 110 0% 99 21.2% 70 24.2% - - - superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl PLXNB1 5364 genome.wustl.edu 37 3 48450873 48450873 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130082.1 -1 validated p.R1984K 1.000 112 0% 99 16.2% 54 64.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl PLXNB1 5364 genome.wustl.edu 37 3 48456749 48456749 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130082.1 -1 validated p.R1268C 0.998 64 0% 69 14.5% 30 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains PLXNB1 5364 genome.wustl.edu 37 3 48463083 48463083 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130082.1 -1 validated p.E551D 1.000 73 0% 120 20% 10 30% benign(0.122) tolerated(0.06) neutral(0.333) NULL ATRIP 84126 genome.wustl.edu 37 3 48501728 48501728 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130384.1 +1 reviewed p.F425L 0.898 125 0% 71 28.2% 14 42.8% possibly_damaging(0.808) tolerated(0.29) neutral(0.333) NULL PFKFB4 5210 genome.wustl.edu 37 3 48563004 48563004 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004567.2 -1 provisional p.K362N 0.999 70 0% 55 10.9% 4 0% benign(0.085) tolerated(0.12) neutral(0.267) HMMPfam_PGAM,superfamily_SSF53254 COL7A1 1294 genome.wustl.edu 37 3 48611138 48611138 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000094.3 -1 reviewed p.G2186 0.989 85 0% 87 17.2% 5 0% - - - HMMPfam_Collagen COL7A1 1294 genome.wustl.edu 37 3 48618768 48618768 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000094.3 -1 reviewed p.D1608E 0.400 78 0% 44 25% 3 0% possibly_damaging(0.825) tolerated(1) neutral(0.312) HMMPfam_Collagen COL7A1 1294 genome.wustl.edu 37 3 48629243 48629243 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000094.3 -1 reviewed p.P457Q 0.702 95 0% 80 13.8% 1 0% unknown(0) tolerated(0.09) - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CELSR3 1951 genome.wustl.edu 37 3 48689953 48689953 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001407.2 -1 reviewed p.L1890M 1.000 83 0% 102 23.5% 0 - possibly_damaging(0.952) tolerated(0.06) deleterious(0.718) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 CELSR3 1951 genome.wustl.edu 37 3 48696694 48696694 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001407.2 -1 reviewed p.T1125M 1.000 256 0.8% 244 25% 0 - probably_damaging(0.997) tolerated(0.11) deleterious(0.738) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CELSR3 1951 genome.wustl.edu 37 3 48697908 48697908 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001407.2 -1 reviewed p.E720 0.998 66 0% 83 24.1% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like NCKIPSD 51517 genome.wustl.edu 37 3 48712149 48712149 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000413374 -1 known p.C125* 0.989 270 0% 219 25.1% 62 37% - - - NULL PRKAR2A 5576 genome.wustl.edu 37 3 48845102 48845102 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004157.2 -1 reviewed p.R93I 1.000 363 0% 297 21.2% 2 50% possibly_damaging(0.865) deleterious(0.01) deleterious(0.741) superfamily_cNMP_binding ARIH2 10425 genome.wustl.edu 37 3 48965219 48965219 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006321.2 +1 provisional p.H76 1.000 204 0% 160 17.5% 25 44% - - - NULL P4HTM 54681 genome.wustl.edu 37 3 49042505 49042505 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177938.2 +1 reviewed p.P367S 0.000 76 0% 85 25.9% 7 57.1% benign(0.133) tolerated(0.8) neutral(0.011) HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc WDR6 11180 genome.wustl.edu 37 3 49049955 49049955 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018031.3 +1 reviewed p.R360C 0.909 159 0% 117 16.2% 25 32% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_WD40 repeat-like WDR6 11180 genome.wustl.edu 37 3 49052386 49052386 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018031.3 +1 reviewed p.V1041M 0.000 227 0% 214 23.8% 100 28% benign(0.032) tolerated(0.12) neutral(0.262) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 DALRD3 55152 genome.wustl.edu 37 3 49053774 49053774 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009996.1 -1 validated e9-1 0.997 130 0% 111 11.7% 4 50% - - - - QRICH1 54870 genome.wustl.edu 37 3 49095223 49095223 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000479449 -1 known NULL 1.000 581 0% 352 11.9% 30 23.3% - - - - USP19 10869 genome.wustl.edu 37 3 49153577 49153577 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006677.1 -1 provisional p.E357D 0.997 77 0% 85 12.9% 16 68.7% benign(0) tolerated(0.43) neutral(0.013) superfamily_HSP20-like chaperones,HMMPfam_DUF1872 LAMB2 3913 genome.wustl.edu 37 3 49159693 49159693 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002292.3 -1 reviewed p.R1562* 0.996 56 0% 66 24.2% 125 4% - - - NULL LAMB2 3913 genome.wustl.edu 37 3 49166175 49166175 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002292.3 -1 reviewed p.Q603 0.003 81 0% 76 23.7% 19 57.8% - - - NULL LAMB2 3913 genome.wustl.edu 37 3 49167361 49167361 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002292.3 -1 reviewed p.R439H 1.000 139 0% 99 19.2% 17 0% probably_damaging(0.996) tolerated(0.53) deleterious(0.469) HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_SSF57196 LAMB2 3913 genome.wustl.edu 37 3 49168459 49168459 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002292.3 -1 reviewed p.R280H 1.000 199 0.5% 155 26.5% 12 83.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_N,HMMSmart_LamNT CCDC71 64925 genome.wustl.edu 37 3 49200894 49200894 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022903.3 -1 validated p.R250* 0.000 189 0% 284 26.8% 26 23% - - - NULL KLHDC8B 200942 genome.wustl.edu 37 3 49212320 49212320 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173546.1 +1 provisional p.G229 1.000 67 0% 90 23.3% 25 40% - - - HMMPfam_Kelch_1,superfamily_Gal_oxid_central LOC646498 646498 genome.wustl.edu 37 3 49215384 49215384 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080528.2 -1 validated p.L100 0.097 38 0% 66 24.2% 0 - - - - NULL LOC646498 646498 genome.wustl.edu 37 3 49215425 49215425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080528.2 -1 validated p.R87W 0.342 18 0% 32 34.4% 0 - - - - NULL CCDC36 339834 genome.wustl.edu 37 3 49292916 49292916 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135197.1 +1 validated p.R209I 0.000 426 0% 179 20.1% 0 - possibly_damaging(0.861) tolerated(0.13) deleterious(0.586) NULL USP4 7375 genome.wustl.edu 37 3 49354742 49354742 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415188 -1 known p.E289* 1.000 20 0% 14 28.6% 0 - - - - NULL BSN 8927 genome.wustl.edu 37 3 49662521 49662521 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003458.3 +1 reviewed p.R113M 0.996 91 0% 41 17.1% 0 - possibly_damaging(0.612) - - NULL BSN 8927 genome.wustl.edu 37 3 49680455 49680455 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003458.3 +1 reviewed p.A463V 0.869 38 0% 28 17.9% 0 - benign(0.025) - - HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF BSN 8927 genome.wustl.edu 37 3 49691615 49691615 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003458.3 +1 reviewed p.T1542 0.003 131 0% 121 22.3% 0 - - - - NULL BSN 8927 genome.wustl.edu 37 3 49694790 49694790 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003458.3 +1 reviewed p.R2601* 0.984 42 0% 38 34.2% 0 - - - - NULL BSN 8927 genome.wustl.edu 37 3 49698268 49698268 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003458.3 +1 reviewed p.R2997H 1.000 22 0% 29 20.7% 0 - unknown(0) - - NULL APEH 327 genome.wustl.edu 37 3 49714448 49714448 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001640.3 +1 reviewed p.Q330 0.998 168 0% 143 23.8% 146 46.5% - - - superfamily_Peptidase_S9A_N MST1 4485 genome.wustl.edu 37 3 49721809 49721809 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020998.3 -1 reviewed p.G652* 1.000 111 0% 85 18.8% 27 40.7% - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases RNF123 63891 genome.wustl.edu 37 3 49742510 49742510 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022064.2 +1 reviewed p.L685I 1.000 41 0% 32 37.5% 5 0% probably_damaging(0.971) tolerated(0.37) neutral(0.432) NULL AMIGO3 386724 genome.wustl.edu 37 3 49756356 49756356 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198722.2 -1 validated p.S181 0.722 32 0% 33 24.2% 8 25% - - - superfamily_SSF52058 RNF123 63891 genome.wustl.edu 37 3 49758004 49758004 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022064.2 +1 reviewed p.C1187* 1.000 38 0% 64 31.2% 61 14.7% - - - NULL CDHR4 389118 genome.wustl.edu 37 3 49828881 49828881 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000487666 -1 known p.G131* 0.998 127 0% 135 24.4% 0 - possibly_damaging(0.677) deleterious(0) deleterious(0.685) NULL CDHR4 389118 genome.wustl.edu 37 3 49832787 49832787 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007540.2 -1 provisional p.T291 0.000 66 0% 79 21.5% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDHR4 389118 genome.wustl.edu 37 3 49836713 49836713 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007540.2 -1 provisional p.S69R 0.050 566 0% 476 20.6% 0 - possibly_damaging(0.913) deleterious(0) deleterious(0.809) NULL MST1R 4486 genome.wustl.edu 37 3 49940483 49940483 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002447.2 -1 validated p.T187N 0.212 19 0% 25 20% 14 35.7% probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain MON1A 84315 genome.wustl.edu 37 3 49947637 49947637 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032355.3 -1 validated p.T529A 1.000 61 0% 46 32.6% 26 57.6% benign(0.075) tolerated(0.81) neutral(0.005) HMMPfam_Mon1 RBM6 10180 genome.wustl.edu 37 3 50005863 50005863 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005777.2 +1 validated p.E335D 1.000 109 0% 80 13.8% 12 25% benign(0.414) tolerated(0.61) neutral(0.138) NULL RBM6 10180 genome.wustl.edu 37 3 50095878 50095878 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005777.2 +1 validated p.V671 1.000 264 0% 103 22.3% 45 31.1% - - - superfamily_SSF54928 GNAT1 2779 genome.wustl.edu 37 3 50230829 50230829 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000172.3 +1 reviewed p.S94Y 0.998 69 0% 83 16.9% 0 - benign(0.109) deleterious(0) neutral(0.453) HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540 SLC38A3 10991 genome.wustl.edu 37 3 50252887 50252887 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006841.4 +1 validated p.V123 0.994 201 0% 192 19.3% 0 - - - - HMMPfam_Aa_trans IFRD2 7866 genome.wustl.edu 37 3 50328001 50328001 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006764.4 -1 validated p.E120D 0.994 222 0% 266 16.9% 51 21.5% unknown(0) deleterious(0) - HMMPfam_IFRD RASSF1 11186 genome.wustl.edu 37 3 50368035 50368035 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170714.1 -1 reviewed p.L338M 0.998 129 0% 134 18.7% 41 12.1% benign(0.03) tolerated(0.22) neutral(0.044) NULL RASSF1 11186 genome.wustl.edu 37 3 50369104 50369104 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170714.1 -1 reviewed p.V220M 0.993 56 0% 72 15.3% 48 25% possibly_damaging(0.604) - - HMMPfam_RA,HMMSmart_SM00314 CACNA2D2 9254 genome.wustl.edu 37 3 50402108 50402108 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005505.1 -1 reviewed p.R1143C 0.020 28 0% 33 30.3% 0 - unknown(0) deleterious(0) - NULL CACNA2D2 9254 genome.wustl.edu 37 3 50413440 50413440 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005505.1 -1 reviewed p.T576N 1.000 165 0% 190 25.8% 0 - probably_damaging(0.965) tolerated(0.09) deleterious(0.704) NULL DOCK3 1795 genome.wustl.edu 37 3 50971505 50971505 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004947.3 +1 validated p.Y104 1.000 564 0.2% 449 20% 1 0% - - - NULL VPRBP 9730 genome.wustl.edu 37 3 51457713 51457713 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014703.2 -1 validated p.R851H 1.000 262 0% 115 20% 17 41.1% probably_damaging(0.987) tolerated(0.07) deleterious(0.756) NULL VPRBP 9730 genome.wustl.edu 37 3 51457860 51457860 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014703.2 -1 validated p.R802Q 1.000 463 0.2% 166 30.1% 15 53.3% probably_damaging(0.976) tolerated(0.14) deleterious(0.667) HMMSmart_SM00667,HMMPfam_LisH VPRBP 9730 genome.wustl.edu 37 3 51464969 51464969 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014703.2 -1 validated p.Q514H 1.000 109 0% 46 32.6% 7 42.8% possibly_damaging(0.913) tolerated(0.09) deleterious(0.661) superfamily_ARM repeat VPRBP 9730 genome.wustl.edu 37 3 51475897 51475897 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014703.2 -1 validated p.R177Q 1.000 54 0% 25 24% 3 0% benign(0.001) tolerated(0.53) neutral(0.007) superfamily_ARM repeat RAD54L2 23132 genome.wustl.edu 37 3 51671348 51671348 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015106.2 +1 validated p.C504Y 1.000 166 0% 49 12.2% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases RAD54L2 23132 genome.wustl.edu 37 3 51697213 51697213 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015106.2 +1 validated p.P1394L 0.999 401 0.2% 332 25% 3 0% possibly_damaging(0.887) deleterious(0.01) deleterious(0.752) NULL TEX264 51368 genome.wustl.edu 37 3 51733496 51733496 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129884.1 +1 validated p.A185 0.997 191 0% 193 11.9% 236 23.3% - - - NULL GRM2 2912 genome.wustl.edu 37 3 51746633 51746633 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000839.3 +1 reviewed p.L199I 1.000 256 0% 275 22.5% 0 - probably_damaging(0.966) tolerated(0.19) neutral(0.457) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I GRM2 2912 genome.wustl.edu 37 3 51749765 51749765 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000839.3 +1 reviewed p.R659H 1.000 113 0% 93 20.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_3 GRM2 2912 genome.wustl.edu 37 3 51752122 51752122 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000839.3 +1 reviewed p.S871 0.923 194 0.5% 199 22.6% 0 - - - - NULL IQCF1 132141 genome.wustl.edu 37 3 51937031 51937031 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152397.2 -1 validated p.H26 0.000 726 0% 359 19.8% 1 100% - - - NULL RRP9 9136 genome.wustl.edu 37 3 51969265 51969265 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004704.3 -1 provisional p.D328N 1.000 77 0% 55 20% 80 75% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 RRP9 9136 genome.wustl.edu 37 3 51969628 51969628 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004704.3 -1 provisional p.E272 1.000 330 0% 295 24.4% 61 1.6% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like RRP9 9136 genome.wustl.edu 37 3 51971581 51971581 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004704.3 -1 provisional p.Q124* 1.000 282 0% 214 24.8% 52 1.9% - - - superfamily_WD40 repeat-like PARP3 10039 genome.wustl.edu 37 3 51978570 51978570 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003931.2 +1 reviewed p.D166 0.000 180 0% 143 9.8% 32 34.3% - - - NULL PARP3 10039 genome.wustl.edu 37 3 51978832 51978832 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003931.2 +1 reviewed p.V187 0.004 51 0% 69 24.6% 29 55.1% - - - NULL ABHD14A 25864 genome.wustl.edu 37 3 52014987 52014987 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015407.4 +1 validated p.Q257* 0.000 325 0% 296 20.6% 51 27.4% - - - superfamily_SSF53474 RPL29 6159 genome.wustl.edu 37 3 52028040 52028040 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000992.2 -1 reviewed p.A69T 0.052 107 0% 113 24.8% 1872 41.5% benign(0.006) tolerated(0.19) neutral(0.050) NULL ALAS1 211 genome.wustl.edu 37 3 52242102 52242102 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000688.4 +1 validated p.A390V 0.999 214 0.9% 157 28.7% 102 40.1% possibly_damaging(0.842) deleterious(0.01) deleterious(0.728) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases TWF2 11344 genome.wustl.edu 37 3 52263754 52263754 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007284.3 -1 reviewed p.R269* 1.000 97 0% 125 12.8% 122 0% - - - HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753 WDR82 80335 genome.wustl.edu 37 3 52301021 52301021 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025222.3 -1 validated p.Y91* 1.000 550 0% 361 28.8% 20 15% - - - superfamily_WD40 repeat-like GLYCTK 132158 genome.wustl.edu 37 3 52326740 52326740 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145262.3 +1 reviewed p.E390D 0.416 53 0% 43 25.6% 8 50% benign(0.137) tolerated(0.32) neutral(0.036) superfamily_GckA/TtuD-like DNAH1 25981 genome.wustl.edu 37 3 52398658 52398658 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.H1750R 1.000 139 0% 132 22.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH1 25981 genome.wustl.edu 37 3 52404527 52404527 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.R2098H 0.140 125 0% 203 12.3% 0 - benign(0.007) tolerated(0.18) neutral(0.056) NULL DNAH1 25981 genome.wustl.edu 37 3 52404740 52404740 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.L2142 0.000 204 0% 185 25.4% 2 0% - - - NULL DNAH1 25981 genome.wustl.edu 37 3 52404784 52404784 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.E2156 1.000 166 0% 182 25.8% 1 0% - - - NULL DNAH1 25981 genome.wustl.edu 37 3 52409255 52409255 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated e44-1 1.000 56 0% 85 15.3% 0 - - - - - DNAH1 25981 genome.wustl.edu 37 3 52426627 52426627 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.S3400 1.000 91 0% 73 21.9% 1 100% - - - NULL DNAH1 25981 genome.wustl.edu 37 3 52429443 52429443 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.F3696 1.000 137 0% 96 18.8% 4 25% - - - HMMPfam_Dynein_heavy DNAH1 25981 genome.wustl.edu 37 3 52432119 52432119 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015512.4 +1 validated p.A4010 0.073 183 0.5% 180 23.9% 7 57.1% - - - HMMPfam_Dynein_heavy BAP1 8314 genome.wustl.edu 37 3 52436618 52436618 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004656.2 -1 reviewed p.G686C 1.000 350 0.3% 338 26.3% 66 31.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL BAP1 8314 genome.wustl.edu 37 3 52436834 52436834 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000469613 -1 known p.R48H 0.862 333 0% 304 19.7% 58 39.6% - - - NULL BAP1 8314 genome.wustl.edu 37 3 52438524 52438524 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004656.2 -1 reviewed p.D399N 1.000 224 0.4% 209 20.1% 32 37.5% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL BAP1 8314 genome.wustl.edu 37 3 52442616 52442616 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004656.2 -1 reviewed p.V43 0.950 124 0% 115 22.6% 23 21.7% - - - HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases TNNC1 7134 genome.wustl.edu 37 3 52485815 52485815 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003280.2 -1 reviewed p.D88N 1.000 258 0% 265 20.4% 56 48.2% benign(0.011) tolerated(0.06) neutral(0.323) superfamily_EF-hand NISCH 11188 genome.wustl.edu 37 3 52521557 52521557 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007184.3 +1 validated p.A683 0.003 40 0% 54 31.5% 19 21% - - - NULL NISCH 11188 genome.wustl.edu 37 3 52526123 52526123 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007184.3 +1 validated p.I1380 1.000 34 0% 22 36.4% 55 34.5% - - - NULL STAB1 23166 genome.wustl.edu 37 3 52542295 52542295 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015136.2 +1 reviewed p.G719S 0.991 218 0% 262 22.1% 5 0% probably_damaging(1) tolerated(0.11) deleterious(0.772) NULL STAB1 23166 genome.wustl.edu 37 3 52548195 52548195 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015136.2 +1 reviewed p.R1171H 0.000 76 0% 107 19.6% 5 0% benign(0) tolerated(0.37) neutral(0.019) HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain STAB1 23166 genome.wustl.edu 37 3 52551929 52551929 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015136.2 +1 reviewed p.C1557 1.000 19 0% 37 27% 15 0% - - - superfamily_FAS1 domain,HMMSmart_SM00181 STAB1 23166 genome.wustl.edu 37 3 52553388 52553388 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015136.2 +1 reviewed p.H1715Y 0.189 102 0% 127 26% 10 0% possibly_damaging(0.925) tolerated(0.29) neutral(0.403) superfamily_FAS1 domain STAB1 23166 genome.wustl.edu 37 3 52555008 52555008 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015136.2 +1 reviewed p.G1965 0.825 31 0% 48 20.8% 22 0% - - - NULL NT5DC2 64943 genome.wustl.edu 37 3 52562059 52562059 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134231.1 -1 validated p.L268F 1.000 70 0% 94 19.1% 78 24.3% benign(0.011) tolerated(0.73) neutral(0.002) HMMPfam_5_nucleotid NT5DC2 64943 genome.wustl.edu 37 3 52563178 52563178 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000489316 -1 known p.R67* 0.139 411 0% 469 14.3% 48 25% - - - NULL NT5DC2 64943 genome.wustl.edu 37 3 52563250 52563250 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000489316 -1 known p.R43* 0.127 540 0.2% 593 21.2% 50 46% - - - NULL NT5DC2 64943 genome.wustl.edu 37 3 52563283 52563283 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000498608 -1 known p.A44V 1.000 455 0.2% 498 22.5% 37 35.1% - - - NULL PBRM1 55193 genome.wustl.edu 37 3 52610695 52610695 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018165.4 -1 validated p.R1153* 0.999 435 0% 210 27.6% 3 0% - - - HMMPfam_BAH,HMMSmart_BAH GNL3 26354 genome.wustl.edu 37 3 52726986 52726986 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014366.4 +1 validated p.R323Q 1.000 262 0% 254 21.3% 139 51% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MMR_HSR1 ITIH1 3697 genome.wustl.edu 37 3 52818383 52818383 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002215.2 +1 reviewed p.L433M 1.000 150 0% 117 23.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like ITIH1 3697 genome.wustl.edu 37 3 52818481 52818481 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002215.2 +1 reviewed p.T465 0.470 167 0% 121 20.7% 0 - - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like ITIH3 3699 genome.wustl.edu 37 3 52828871 52828871 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002217.3 +1 validated p.A18T 0.624 170 0% 164 12.8% 0 - benign(0.139) tolerated(0.15) neutral(0.253) NULL ITIH3 3699 genome.wustl.edu 37 3 52836787 52836787 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002217.3 +1 validated p.W558C 1.000 148 0% 103 25.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRKCD 5580 genome.wustl.edu 37 3 53212455 53212455 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006254.3 +1 reviewed p.R6H 1.000 27 0% 37 16.2% 9 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_C2_CaLB PRKCD 5580 genome.wustl.edu 37 3 53220661 53220661 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006254.3 +1 reviewed p.D434 1.000 138 0% 114 26.3% 59 23.7% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PRKCD 5580 genome.wustl.edu 37 3 53220690 53220690 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006254.3 +1 reviewed p.R444H 1.000 103 0% 85 15.3% 81 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase TKT 7086 genome.wustl.edu 37 3 53259944 53259944 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001064.2 -1 validated p.G567D 1.000 80 0% 69 29% 870 44.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like ENSG00000113811 0 genome.wustl.edu 37 3 53922449 53922449 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000488746 -1 known p.F27L 0.982 483 0% 709 21.2% 79 26.5% possibly_damaging(0.775) deleterious(0) deleterious(0.733) NULL CACNA2D3 55799 genome.wustl.edu 37 3 54354486 54354486 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018398.2 +1 reviewed p.E74 0.998 280 0% 87 17.2% 0 - - - - NULL CACNA2D3 55799 genome.wustl.edu 37 3 54798290 54798290 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018398.2 +1 reviewed p.V431A 1.000 195 0% 54 25.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like CACNA2D3 55799 genome.wustl.edu 37 3 55018673 55018673 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018398.2 +1 reviewed p.I865 0.998 364 0% 127 15.7% 0 - - - - NULL WNT5A 7474 genome.wustl.edu 37 3 55514868 55514868 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003392.3 -1 reviewed p.A29S 1.000 210 0% 287 24.4% 7 71.4% benign(0) tolerated(0.44) neutral(0.013) NULL ERC2 26059 genome.wustl.edu 37 3 56114944 56114944 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015576.1 -1 validated p.Q514H 0.993 659 0% 156 20.5% 0 - possibly_damaging(0.609) deleterious(0.05) deleterious(0.556) superfamily_Prefoldin,HMMPfam_Cast FAM208A 23272 genome.wustl.edu 37 3 56661679 56661679 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112736.1 -1 validated p.E1321* 1.000 295 0% 116 19.8% 12 25% - - - NULL ARHGEF3 50650 genome.wustl.edu 37 3 56763323 56763323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128615.1 -1 reviewed p.S551N 1.000 326 0% 229 24.9% 42 47.6% benign(0) tolerated(0.34) neutral(0.023) NULL IL17RD 54756 genome.wustl.edu 37 3 57148844 57148844 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017563.3 -1 validated p.N62K 1.000 185 0% 77 22.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ASB14 142686 genome.wustl.edu 37 3 57312486 57312486 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142733.2 -1 reviewed p.C286W 0.989 259 0% 72 26.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Ankyrin repeat DNAH12 201625 genome.wustl.edu 37 3 57407351 57407351 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178504.4 -1 validated p.R1800Q 0.996 279 0% 177 24.3% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL DNAH12 201625 genome.wustl.edu 37 3 57445347 57445347 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178504.4 -1 validated p.I945N 1.000 290 0% 176 13.6% 0 - probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_DHC_N2 PDE12 201626 genome.wustl.edu 37 3 57542566 57542566 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177966.5 +1 validated p.K154E 1.000 38 0% 38 21.1% 7 57.1% benign(0.008) tolerated(0.83) neutral(0.001) NULL SLMAP 7871 genome.wustl.edu 37 3 57857370 57857370 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007159.2 +1 validated p.L381 1.000 427 0% 203 29.1% 5 40% - - - NULL SLMAP 7871 genome.wustl.edu 37 3 57882279 57882279 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007159.2 +1 validated p.L434M 1.000 242 0.4% 101 10.9% 25 0% probably_damaging(0.982) deleterious(0.04) deleterious(0.775) NULL FLNB 2317 genome.wustl.edu 37 3 58090816 58090816 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001457.3 +1 reviewed p.E540D 1.000 316 0% 134 22.4% 1 0% possibly_damaging(0.599) deleterious(0.04) deleterious(0.556) HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin FLNB 2317 genome.wustl.edu 37 3 58090931 58090931 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001457.3 +1 reviewed p.V579M 1.000 325 0% 141 29.1% 2 0% possibly_damaging(0.912) deleterious(0.03) deleterious(0.728) HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin FLNB 2317 genome.wustl.edu 37 3 58109014 58109014 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001457.3 +1 reviewed p.Y1107* 1.000 144 0% 110 24.5% 7 0% - - - HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin FLNB 2317 genome.wustl.edu 37 3 58109227 58109227 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001457.3 +1 reviewed p.A1178 0.002 28 0% 36 25% 5 20% - - - HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin FLNB 2317 genome.wustl.edu 37 3 58132548 58132548 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001457.3 +1 reviewed p.G1852 0.978 144 0% 122 27.9% 10 90% - - - HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin FLNB 2317 genome.wustl.edu 37 3 58140635 58140635 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001457.3 +1 reviewed p.S2251Y 1.000 260 0% 145 21.4% 16 0% probably_damaging(0.959) deleterious(0.02) deleterious(0.786) HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin ABHD6 57406 genome.wustl.edu 37 3 58260422 58260422 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020676.5 +1 validated p.R187 0.940 105 0% 68 11.8% 2 100% - - - HMMPfam_Abhydrolase_1,superfamily_SSF53474 PXK 54899 genome.wustl.edu 37 3 58383350 58383350 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017771.3 +1 provisional p.V335I 1.000 140 0% 81 17.3% 19 52.6% probably_damaging(0.991) deleterious(0) deleterious(0.889) superfamily_Protein kinase-like (PK-like) PDHB 5162 genome.wustl.edu 37 3 58413801 58413801 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000925.3 -1 reviewed p.K347T 1.000 274 0% 274 18.2% 203 35.9% benign(0.021) tolerated(0.21) neutral(0.045) HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like ACOX2 8309 genome.wustl.edu 37 3 58519214 58519214 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003500.3 -1 reviewed p.H181Y 0.986 425 0% 319 22.3% 0 - possibly_damaging(0.801) deleterious(0) deleterious(0.746) HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM C3orf67 200844 genome.wustl.edu 37 3 58852360 58852360 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198463.2 -1 validated p.T272I 0.000 404 0% 382 18.8% 0 - benign(0.261) deleterious(0.02) neutral(0.410) NULL FHIT 2272 genome.wustl.edu 37 3 59999787 59999787 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002012.2 -1 reviewed p.V65 0.000 156 0% 71 21.1% 20 40% - - - HMMPfam_HIT,superfamily_HIT-like PTPRG 5793 genome.wustl.edu 37 3 62177317 62177317 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002841.3 +1 reviewed p.D403G 1.000 259 0% 148 31.1% 6 33.3% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRG 5793 genome.wustl.edu 37 3 62268469 62268469 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002841.3 +1 reviewed p.S1327N 1.000 361 0% 79 21.5% 15 40% possibly_damaging(0.926) deleterious(0.03) deleterious(0.739) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II CADPS 8618 genome.wustl.edu 37 3 62385182 62385182 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003716.3 -1 reviewed p.R1321C 1.000 297 0.3% 121 14% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CADPS 8618 genome.wustl.edu 37 3 62631473 62631473 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003716.3 -1 reviewed p.R417C 1.000 487 0% 111 27.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_C2 ATXN7 6314 genome.wustl.edu 37 3 63975998 63975998 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128149.2 +1 reviewed p.S503Y 1.000 230 0% 197 20.3% 1 0% possibly_damaging(0.906) tolerated(0.34) neutral(0.383) NULL ADAMTS9 56999 genome.wustl.edu 37 3 64589764 64589764 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182920.1 -1 reviewed p.C1194Y 1.000 285 0% 91 15.4% 9 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat TMF1 7110 genome.wustl.edu 37 3 69096604 69096604 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007114.2 -1 validated p.N418D 0.032 244 0% 202 11.4% 6 33.3% benign(0) tolerated(0.78) neutral(0.001) NULL UBA3 9039 genome.wustl.edu 37 3 69112215 69112215 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003968.3 -1 reviewed p.E204A 1.000 208 0% 167 25.1% 38 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins LMOD3 56203 genome.wustl.edu 37 3 69168712 69168712 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198271.3 -1 validated p.N265S 1.000 496 0% 147 15.6% 0 - probably_damaging(1) tolerated(0.18) deleterious(0.556) HMMPfam_Tropomodulin,superfamily_RNI-like FRMD4B 23150 genome.wustl.edu 37 3 69221074 69221074 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015123.1 -1 validated p.L1015M 0.057 738 0.1% 246 26.4% 19 47.3% benign(0.001) tolerated(0.12) neutral(0.261) NULL FRMD4B 23150 genome.wustl.edu 37 3 69242999 69242999 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015123.1 -1 validated p.S505I 1.000 524 0% 449 12% 4 0% possibly_damaging(0.926) deleterious(0.02) deleterious(0.758) NULL FOXP1 27086 genome.wustl.edu 37 3 71026848 71026848 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032682.4 -1 reviewed p.F458L 1.000 590 0% 440 15.9% 17 29.4% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL GXYLT2 727936 genome.wustl.edu 37 3 73016845 73016845 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080393.1 +1 provisional p.R375I 0.763 293 0% 126 21.4% 1 0% possibly_damaging(0.946) deleterious(0.01) deleterious(0.796) superfamily_SSF53448 GXYLT2 727936 genome.wustl.edu 37 3 73024212 73024212 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080393.1 +1 provisional p.R412* 1.000 397 0% 208 25.5% 2 0% - - - NULL PDZRN3 23024 genome.wustl.edu 37 3 73432936 73432936 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000416926 -1 known p.R647* 1.000 33 0% 33 24.2% 4 0% - - - NULL CNTN3 5067 genome.wustl.edu 37 3 74334530 74334530 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020872.1 -1 validated p.T877M 0.945 161 0% 49 22.4% 0 - probably_damaging(0.968) deleterious(0.02) deleterious(0.793) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CNTN3 5067 genome.wustl.edu 37 3 74411082 74411082 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020872.1 -1 validated p.S441 0.000 194 0% 97 15.5% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin ROBO2 6092 genome.wustl.edu 37 3 77607110 77607110 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002942.3 +1 reviewed p.P416H 1.000 132 0% 36 13.9% 1 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) superfamily_Immunoglobulin ROBO2 6092 genome.wustl.edu 37 3 77651546 77651546 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002942.3 +1 reviewed p.D1014N 1.000 314 0% 312 24% 1 100% possibly_damaging(0.894) deleterious(0.01) deleterious(0.758) NULL ROBO1 6091 genome.wustl.edu 37 3 78685208 78685208 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002941.3 -1 reviewed p.L1030M 1.000 199 0% 75 20% 4 0% possibly_damaging(0.598) deleterious(0.02) deleterious(0.590) NULL ROBO1 6091 genome.wustl.edu 37 3 78717178 78717178 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002941.3 -1 reviewed p.W607* 1.000 229 0% 112 13.4% 3 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CADM2 253559 genome.wustl.edu 37 3 85851295 85851295 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153184.3 +1 validated p.L56I 1.000 168 0% 46 32.6% 0 - probably_damaging(0.999) tolerated(0.69) deleterious(0.492) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 CHMP2B 25978 genome.wustl.edu 37 3 87302614 87302614 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014043.3 +1 reviewed p.I162T 1.000 335 0% 136 20.6% 38 44.7% probably_damaging(0.978) deleterious(0) deleterious(0.865) HMMPfam_Snf7 CHMP2B 25978 genome.wustl.edu 37 3 87302638 87302638 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014043.3 +1 reviewed p.I170S 1.000 281 0% 125 20.8% 45 42.2% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Snf7 HTR1F 3355 genome.wustl.edu 37 3 88040117 88040117 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000866.3 +1 validated p.A73V 1.000 299 0% 134 31.3% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_7tm_1,superfamily_SSF81321 CRYBG3 131544 genome.wustl.edu 37 3 97596706 97596706 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153605.2 +1 validated p.S275Y 1.000 245 0% 85 21.2% 0 - possibly_damaging(0.92) deleterious(0) deleterious(0.816) NULL CRYBG3 131544 genome.wustl.edu 37 3 97611749 97611749 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153605.2 +1 validated p.F548V 0.997 180 0.6% 39 35.9% 2 0% possibly_damaging(0.83) tolerated(0.63) neutral(0.319) HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like CRYBG3 131544 genome.wustl.edu 37 3 97660077 97660077 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153605.2 +1 validated p.S916Y 0.983 247 0% 61 27.9% 5 40% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins MINA 84864 genome.wustl.edu 37 3 97686297 97686297 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042533.1 -1 validated p.S47 0.010 224 0% 290 15.2% 3 0% - - - superfamily_Clavaminate synthase-like GABRR3 200959 genome.wustl.edu 37 3 97705699 97705699 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329044 -1 known p.S183L 0.000 323 0% 227 18.5% 0 - benign(0.01) tolerated(0.31) neutral(0.028) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore GABRR3 200959 genome.wustl.edu 37 3 97720517 97720517 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329044 -1 known p.M55I 1.000 329 0% 99 24.2% 0 - benign(0.325) tolerated(0.41) neutral(0.117) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore OR5H1 26341 genome.wustl.edu 37 3 97851644 97851644 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005338.1 +1 provisional p.Y35H 0.684 456 0% 114 20.2% 0 - possibly_damaging(0.565) deleterious(0) deleterious(0.637) superfamily_SSF81321 OR5H6 79295 genome.wustl.edu 37 3 97983146 97983146 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005479.1 +1 provisional p.C6* 0.000 305 0% 93 12.9% 0 - - - - NULL OR5K3 403277 genome.wustl.edu 37 3 98109720 98109720 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005516.1 +1 provisional p.S71A 0.964 594 0% 177 11.9% 0 - benign(0.325) tolerated(0.62) neutral(0.106) HMMPfam_7tm_1,superfamily_SSF81321 OR5K3 403277 genome.wustl.edu 37 3 98110278 98110278 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005516.1 +1 provisional p.Y257H 0.165 473 0% 207 20.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_7tm_1,superfamily_SSF81321 GPR15 2838 genome.wustl.edu 37 3 98251440 98251440 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005290.1 +1 provisional p.A188V 0.085 324 0% 310 21.6% 0 - benign(0) tolerated(0.22) neutral(0.042) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ST3GAL6 10402 genome.wustl.edu 37 3 98506993 98506993 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006100.2 +1 provisional p.T182M 0.010 362 0% 125 18.4% 10 30% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Glyco_transf_29 COL8A1 1295 genome.wustl.edu 37 3 99514827 99514827 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001850.3 +1 reviewed p.K694N 1.000 56 0% 55 23.6% 0 - possibly_damaging(0.869) deleterious(0) deleterious(0.782) HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like FILIP1L 11259 genome.wustl.edu 37 3 99569425 99569425 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182909.2 -1 validated p.N365 0.003 571 0% 225 19.6% 3 0% - - - superfamily_Prefoldin,HMMPfam_CortBP2 C3orf26 84319 genome.wustl.edu 37 3 99891190 99891190 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032359.3 +1 validated p.R204C 1.000 380 0% 108 16.7% 70 30% probably_damaging(0.973) tolerated(0.05) deleterious(0.760) superfamily_SSF52540 GPR128 84873 genome.wustl.edu 37 3 100364806 100364806 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032787.2 +1 validated p.G322S 1.000 352 0.3% 160 18.1% 0 - probably_damaging(1) tolerated(0.13) deleterious(0.752) NULL TFG 10342 genome.wustl.edu 37 3 100432650 100432650 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007565.1 +1 validated p.Q41* 1.000 189 0% 217 18% 37 16.2% - - - HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277 ABI3BP 25890 genome.wustl.edu 37 3 100593706 100593706 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015429.3 -1 validated p.D304Y 0.950 546 0% 236 18.6% 3 0% possibly_damaging(0.843) deleterious(0.01) deleterious(0.729) NULL ABI3BP 25890 genome.wustl.edu 37 3 100595401 100595401 + Missense_Mutation SNP C C A rs75841780 byCluster;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015429.3 -1 validated p.A241S 0.729 499 0% 228 21.1% 0 - benign(0) tolerated(0.31) neutral(0.027) NULL IMPG2 50939 genome.wustl.edu 37 3 100949961 100949961 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016247.2 -1 validated p.R1088* 1.000 278 0% 142 31.7% 0 - - - - superfamily_EGF/Laminin IMPG2 50939 genome.wustl.edu 37 3 101038554 101038554 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016247.2 -1 validated p.E70* 0.204 385 0% 80 32.5% 0 - - - - NULL IMPG2 50939 genome.wustl.edu 37 3 101038604 101038604 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016247.2 -1 validated p.S53L 0.001 290 0% 75 20% 0 - probably_damaging(0.978) deleterious(0.01) deleterious(0.826) NULL SENP7 57337 genome.wustl.edu 37 3 101085535 101085535 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020654.3 -1 validated p.P353S 0.001 437 0% 170 18.8% 2 0% benign(0.039) tolerated(0.16) neutral(0.061) NULL RG9MTD1 54931 genome.wustl.edu 37 3 101284463 101284463 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017819.2 +1 provisional p.D280Y 0.998 214 0% 213 25.4% 39 53.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_tRNA_m1G_MT ZBTB11 27107 genome.wustl.edu 37 3 101378635 101378635 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014415.3 -1 validated p.A680T 1.000 412 0% 181 21% 5 20% probably_damaging(0.999) tolerated(0.19) deleterious(0.540) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 NFKBIZ 64332 genome.wustl.edu 37 3 101576173 101576173 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031419.2 +1 reviewed p.S658I 1.000 190 0% 141 22.7% 7 42.8% probably_damaging(0.999) tolerated(0.11) deleterious(0.762) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ZPLD1 131368 genome.wustl.edu 37 3 102175202 102175202 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175056.1 +1 provisional p.N181D 1.000 308 0% 186 21.5% 0 - probably_damaging(0.985) deleterious(0.04) deleterious(0.781) HMMPfam_Zona_pellucida,HMMSmart_ZP ALCAM 214 genome.wustl.edu 37 3 105238967 105238967 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001627.2 +1 validated p.R44* 0.976 393 0% 478 11.7% 4 25% - - - HMMSmart_SM00406,HMMSmart_SM00409,superfamily_Immunoglobulin CBLB 868 genome.wustl.edu 37 3 105377828 105377828 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170662.3 -1 validated p.R979C 0.970 254 0% 87 11.5% 40 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CD47 961 genome.wustl.edu 37 3 107776416 107776416 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001777.3 -1 reviewed p.A262V 0.978 187 0% 107 18.7% 412 47.5% benign(0.001) deleterious(0.05) neutral(0.345) HMMPfam_CD47 IFT57 55081 genome.wustl.edu 37 3 107910387 107910387 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018010.3 -1 validated p.T253M 1.000 357 0% 143 26.6% 156 46.7% benign(0.094) deleterious(0.02) neutral(0.390) HMMPfam_IFT57 IFT57 55081 genome.wustl.edu 37 3 107938277 107938277 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018010.3 -1 validated p.L119I 1.000 278 0% 294 23.8% 97 44.3% possibly_damaging(0.939) tolerated(0.18) neutral(0.441) HMMPfam_IFT57 MYH15 22989 genome.wustl.edu 37 3 108158702 108158702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014981.1 -1 validated p.R1006I 1.000 336 0.3% 116 14.7% 0 - probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_Prefoldin MYH15 22989 genome.wustl.edu 37 3 108211437 108211437 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014981.1 -1 validated p.L281I 0.961 324 0.3% 142 22.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases KIAA1524 57650 genome.wustl.edu 37 3 108298165 108298165 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020890.2 -1 validated p.L261F 1.000 187 0% 137 16.1% 7 57.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat KIAA1524 57650 genome.wustl.edu 37 3 108300983 108300983 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020890.2 -1 validated p.E142K 1.000 137 0% 201 21.9% 1 0% unknown(0) - - superfamily_ARM repeat DZIP3 9666 genome.wustl.edu 37 3 108326951 108326951 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014648.3 +1 validated p.E16D 0.411 372 0.3% 131 18.3% 3 66.6% possibly_damaging(0.653) deleterious(0) deleterious(0.674) NULL DZIP3 9666 genome.wustl.edu 37 3 108363063 108363063 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014648.3 +1 validated p.H398 1.000 128 0% 54 13% 3 0% - - - NULL MORC1 27136 genome.wustl.edu 37 3 108688527 108688527 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014429.3 -1 reviewed p.C865R 0.999 336 0% 126 12.7% 0 - probably_damaging(0.97) deleterious(0) deleterious(0.857) NULL MORC1 27136 genome.wustl.edu 37 3 108723664 108723664 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014429.3 -1 reviewed p.Q695 0.000 185 0% 166 25.9% 0 - - - - NULL PVRL3 25945 genome.wustl.edu 37 3 110845070 110845070 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000486596 +1 known p.Q220* 1.000 206 0% 229 24% 7 42.8% - - - superfamily_Immunoglobulin CD96 10225 genome.wustl.edu 37 3 111356968 111356968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198196.2 +1 reviewed p.P493H 0.014 374 0% 97 22.7% 8 0% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) NULL PHLDB2 90102 genome.wustl.edu 37 3 111658363 111658363 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134438.1 +1 validated p.D724E 1.000 276 0% 72 15.3% 1 0% possibly_damaging(0.772) tolerated(0.06) deleterious(0.609) NULL ABHD10 55347 genome.wustl.edu 37 3 111710295 111710295 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018394.2 +1 validated p.N216 0.000 294 0% 169 13% 20 10% - - - HMMPfam_Abhydrolase_1,superfamily_SSF53474 TMPRSS7 344805 genome.wustl.edu 37 3 111800034 111800034 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026734.1 +1 validated NULL 0.001 60 0% 52 32.7% 0 - - - - - C3orf52 79669 genome.wustl.edu 37 3 111835675 111835675 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431717 +1 known p.L195I 0.000 127 0% 45 15.6% 3 0% unknown(0) - - NULL CD200 4345 genome.wustl.edu 37 3 112063945 112063945 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004196.2 +1 reviewed p.T102 0.876 165 0% 85 20% 25 48% - - - HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 ATG3 64422 genome.wustl.edu 37 3 112267473 112267473 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022488.3 -1 provisional p.R84W 0.995 396 0% 310 16.8% 137 44.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Autophagy_N CCDC80 151887 genome.wustl.edu 37 3 112356969 112356969 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199511.1 -1 validated p.G595D 0.846 558 0% 476 21.8% 10 0% benign(0) tolerated(0.66) neutral(0.003) NULL CD200R1 131450 genome.wustl.edu 37 3 112648105 112648105 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138806.3 -1 reviewed p.G151V 0.484 497 0% 182 22% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Immunoglobulin CD200R1 131450 genome.wustl.edu 37 3 112648327 112648327 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138806.3 -1 reviewed p.A77V 0.000 217 0% 85 31.8% 1 0% benign(0.288) tolerated(0.07) neutral(0.407) superfamily_Immunoglobulin BOC 91653 genome.wustl.edu 37 3 112968673 112968673 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033254.2 +1 validated p.A8 0.000 162 0% 79 19% 10 40% - - - NULL WDR52 55779 genome.wustl.edu 37 3 113092331 113092331 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018338.3 -1 validated p.Q791* 0.110 324 0% 93 19.4% 0 - - - - superfamily_WD40_like WDR52 55779 genome.wustl.edu 37 3 113122860 113122860 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018338.3 -1 validated p.L337I 0.956 287 0% 156 22.4% 0 - benign(0.144) tolerated(0.08) neutral(0.312) superfamily_WD40_like SPICE1 152185 genome.wustl.edu 37 3 113184522 113184522 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144718.3 -1 validated p.R422K 0.997 325 0% 264 21.2% 7 71.4% possibly_damaging(0.942) tolerated(0.39) neutral(0.403) NULL SPICE1 152185 genome.wustl.edu 37 3 113187024 113187024 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144718.3 -1 validated p.V373M 1.000 185 0% 129 15.5% 10 40% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL SIDT1 54847 genome.wustl.edu 37 3 113323806 113323806 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017699.2 +1 validated p.V463I 1.000 160 0% 93 12.9% 0 - probably_damaging(0.958) tolerated(0.17) neutral(0.461) NULL KIAA2018 205717 genome.wustl.edu 37 3 113379008 113379008 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009899.2 -1 validated p.Q507H 1.000 224 0% 72 25% 0 - probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL KIAA2018 205717 genome.wustl.edu 37 3 113383224 113383224 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009899.2 -1 validated p.K64N 0.947 533 0% 213 23% 1 0% possibly_damaging(0.722) deleterious(0.01) deleterious(0.667) HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain ATP6V1A 523 genome.wustl.edu 37 3 113517264 113517264 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001690.2 +1 reviewed p.L489M 1.000 229 0% 74 12.2% 32 21.8% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase GRAMD1C 54762 genome.wustl.edu 37 3 113563360 113563360 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017577.4 +1 validated p.E13G 0.019 313 0% 477 24.5% 0 - possibly_damaging(0.586) deleterious(0.02) deleterious(0.585) NULL ZDHHC23 254887 genome.wustl.edu 37 3 113673126 113673126 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173570.3 +1 validated p.K247 0.000 152 0% 154 27.9% 3 33.3% - - - NULL KIAA1407 57577 genome.wustl.edu 37 3 113761601 113761601 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020817.1 -1 predicted p.V122I 0.000 328 0% 146 21.9% 3 66.6% benign(0) tolerated(0.87) neutral(0.001) NULL TIGIT 201633 genome.wustl.edu 37 3 114018495 114018495 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173799.3 +1 validated p.A148V 0.000 127 0.8% 70 20% 19 0% benign(0.195) tolerated(0.59) neutral(0.023) NULL ZBTB20 26137 genome.wustl.edu 37 3 114070277 114070277 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015642.4 -1 validated p.P143 0.130 46 0% 34 20.6% 0 - - - - NULL LSAMP 4045 genome.wustl.edu 37 3 116163854 116163854 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002338.3 -1 reviewed p.R9W 0.999 85 0% 68 23.5% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL ARHGAP31 57514 genome.wustl.edu 37 3 119102050 119102050 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020754.2 +1 reviewed p.A220V 0.065 266 0% 104 16.3% 0 - benign(0.036) deleterious(0) neutral(0.447) superfamily_GTPase activation domain GAP ARHGAP31 57514 genome.wustl.edu 37 3 119133307 119133307 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020754.2 +1 reviewed p.S844I 0.001 81 0% 29 13.8% 3 0% benign(0.242) deleterious(0) deleterious(0.469) NULL ARHGAP31 57514 genome.wustl.edu 37 3 119134618 119134618 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020754.2 +1 reviewed p.C1281Y 0.001 123 0% 49 14.3% 3 0% benign(0.006) deleterious(0.02) neutral(0.383) NULL TMEM39A 55254 genome.wustl.edu 37 3 119150946 119150946 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018266.1 -1 provisional p.S450Y 1.000 246 0% 46 30.4% 32 25% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Tmp39 C3orf15 89876 genome.wustl.edu 37 3 119426373 119426373 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033364.3 +1 validated p.K108N 0.001 166 0% 121 20.7% 0 - possibly_damaging(0.901) - - NULL NR1I2 8856 genome.wustl.edu 37 3 119531658 119531658 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022002.2 +1 reviewed p.L254 1.000 157 0% 177 23.2% 0 - - - - superfamily_Str_ncl_receptor STXBP5L 9515 genome.wustl.edu 37 3 121137342 121137342 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014980.2 +1 validated p.L1153 1.000 142 0% 49 14.3% 0 - - - - NULL POLQ 10721 genome.wustl.edu 37 3 121195392 121195392 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199420.3 -1 validated p.A2134T 1.000 234 0% 73 9.6% 4 0% probably_damaging(0.955) deleterious(0) deleterious(0.843) HMMPfam_DNA_pol_A,superfamily_DNA/RNA polymerases POLQ 10721 genome.wustl.edu 37 3 121208621 121208621 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199420.3 -1 validated p.D1053N 0.000 76 0% 43 18.6% 0 - benign(0.235) deleterious(0.04) neutral(0.372) NULL HCLS1 3059 genome.wustl.edu 37 3 121353130 121353130 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005335.4 -1 validated p.P276H 0.008 131 0.8% 75 33.3% 133 3% benign(0.001) tolerated(0.36) neutral(0.020) NULL HCLS1 3059 genome.wustl.edu 37 3 121355281 121355281 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000412597 -1 known p.R189K 1.000 256 0% 189 25.4% 130 0.7% unknown(0) - - NULL GOLGB1 2804 genome.wustl.edu 37 3 121409831 121409831 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004487.3 -1 validated p.A2789T 0.000 358 0% 427 26.9% 33 45.4% benign(0) deleterious(0.02) neutral(0.383) NULL GOLGB1 2804 genome.wustl.edu 37 3 121412694 121412694 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004487.3 -1 validated p.S2221R 1.000 570 0% 544 24.3% 16 25% benign(0) tolerated(0.26) neutral(0.034) NULL GOLGB1 2804 genome.wustl.edu 37 3 121414324 121414324 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004487.3 -1 validated p.K1677N 0.984 1049 0.2% 839 21.5% 6 66.6% probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL GOLGB1 2804 genome.wustl.edu 37 3 121414685 121414685 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004487.3 -1 validated p.R1557M 0.846 464 0% 366 22.7% 9 44.4% probably_damaging(0.965) deleterious(0) deleterious(0.851) NULL GOLGB1 2804 genome.wustl.edu 37 3 121415754 121415754 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004487.3 -1 validated p.L1201I 1.000 581 0% 448 21% 9 44.4% probably_damaging(0.982) deleterious(0.03) deleterious(0.791) superfamily_Prefoldin GOLGB1 2804 genome.wustl.edu 37 3 121415986 121415986 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000489400 -1 known p.R994K 0.999 513 0% 415 18.8% 4 25% - - - NULL GOLGB1 2804 genome.wustl.edu 37 3 121416964 121416964 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004487.3 -1 validated p.Q797H 1.000 575 0% 350 19.7% 4 50% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL IQCB1 9657 genome.wustl.edu 37 3 121489385 121489385 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001023570.2 -1 reviewed p.P535H 1.000 365 0% 154 26% 47 46.8% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) NULL SLC15A2 6565 genome.wustl.edu 37 3 121643826 121643826 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021082.3 +1 validated p.P357L 1.000 808 0% 378 18.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PTR2,superfamily_MFS_gen_substrate_transporter CASR 846 genome.wustl.edu 37 3 121980577 121980577 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000388.3 +1 reviewed p.E232G 1.000 211 0% 106 20.8% 0 - possibly_damaging(0.861) tolerated(0.28) neutral(0.365) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I CASR 846 genome.wustl.edu 37 3 122002903 122002903 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000388.3 +1 reviewed p.R701L 0.996 94 0% 83 24.1% 0 - possibly_damaging(0.853) tolerated(0.21) neutral(0.372) HMMPfam_7tm_3 CASR 846 genome.wustl.edu 37 3 122003737 122003737 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000388.3 +1 reviewed p.F979S 0.999 107 0% 167 21% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL CCDC58 131076 genome.wustl.edu 37 3 122090589 122090589 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017928.2 -1 validated p.T37M 1.000 404 0% 222 22.5% 57 24.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Cid2 FAM162A 26355 genome.wustl.edu 37 3 122128697 122128697 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440333 +1 known p.A149G 0.109 137 0% 56 33.9% 214 46.7% benign(0) tolerated(0.92) - NULL PARP9 83666 genome.wustl.edu 37 3 122274678 122274678 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031458.2 -1 validated p.L149M 1.000 300 0.3% 201 22.4% 40 35% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like DTX3L 151636 genome.wustl.edu 37 3 122287506 122287506 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138287.3 +1 validated p.E190 0.000 252 0% 252 19.8% 13 61.5% - - - NULL PARP14 54625 genome.wustl.edu 37 3 122418387 122418387 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017554.2 +1 validated p.P329L 0.001 236 0% 132 19.7% 8 25% benign(0.023) tolerated(0.51) neutral(0.010) NULL PARP14 54625 genome.wustl.edu 37 3 122447361 122447361 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017554.2 +1 validated p.D1775Y 0.999 284 0% 242 26.4% 85 50.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PARP,superfamily_ADP-ribosylation DIRC2 84925 genome.wustl.edu 37 3 122575187 122575187 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032839.2 +1 reviewed p.V326F 1.000 1073 0% 696 24.3% 30 43.3% possibly_damaging(0.867) deleterious(0.02) deleterious(0.720) superfamily_MFS general substrate transporter PDIA5 10954 genome.wustl.edu 37 3 122843131 122843131 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000316218 +1 known p.F238 1.000 262 0.4% 170 29.4% 31 35.4% - - - superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin PDIA5 10954 genome.wustl.edu 37 3 122849426 122849426 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000316218 +1 known p.K291N 1.000 189 0% 114 28.1% 24 41.6% benign(0.431) tolerated(0.13) neutral(0.393) superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin SEC22A 26984 genome.wustl.edu 37 3 122943992 122943992 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012430.4 +1 reviewed p.R130M 1.000 215 0% 114 26.3% 7 14.2% probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL ADCY5 111 genome.wustl.edu 37 3 123044184 123044184 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183357.1 -1 validated p.K691 1.000 137 0% 87 29.9% 1 0% - - - HMMPfam_DUF1053 KALRN 8997 genome.wustl.edu 37 3 124103695 124103695 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024660.3 +1 reviewed p.T590A 1.000 57 0% 59 22% 1 0% probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat KALRN 8997 genome.wustl.edu 37 3 124352735 124352735 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024660.3 +1 reviewed p.E1834* 1.000 315 0% 104 28.8% 1 0% - - - NULL UMPS 7372 genome.wustl.edu 37 3 124456473 124456473 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000373.3 +1 reviewed p.E123 0.990 295 0% 242 19.4% 36 50% - - - HMMPfam_Pribosyltran,superfamily_PRTase-like MUC13 56667 genome.wustl.edu 37 3 124646763 124646763 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033049.2 -1 validated p.A43S 0.000 449 0% 157 22.9% 0 - benign(0.001) tolerated(0.77) neutral(0.001) NULL HEG1 57493 genome.wustl.edu 37 3 124696757 124696757 + Missense_Mutation SNP G G A rs186214189 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020733.1 -1 validated p.A1256V 0.985 83 0% 26 30.8% 0 - probably_damaging(0.979) tolerated(0.96) neutral(0.422) NULL HEG1 57493 genome.wustl.edu 37 3 124731685 124731685 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020733.1 -1 validated p.G913E 0.000 418 0% 271 22.9% 0 - benign(0.026) tolerated(0.12) neutral(0.262) NULL HEG1 57493 genome.wustl.edu 37 3 124732330 124732330 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020733.1 -1 validated p.S698Y 0.019 554 0% 364 21.2% 1 0% possibly_damaging(0.926) deleterious(0) deleterious(0.819) NULL ZNF148 7707 genome.wustl.edu 37 3 124952107 124952107 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021964.2 -1 validated p.A488V 0.999 253 0% 75 32% 5 40% possibly_damaging(0.894) deleterious(0.01) deleterious(0.758) NULL SNX4 8723 genome.wustl.edu 37 3 125170262 125170262 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003794.2 -1 reviewed p.E398* 1.000 324 0% 190 18.4% 27 3.7% - - - NULL SNX4 8723 genome.wustl.edu 37 3 125208287 125208287 + Silent SNP C C T rs73862103 byCluster;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003794.2 -1 reviewed p.A206 1.000 398 0% 360 20% 17 5.8% - - - NULL SLC41A3 54946 genome.wustl.edu 37 3 125725258 125725258 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008485.1 -1 validated p.S506T 0.070 119 0% 93 22.6% 29 48.2% benign(0.382) deleterious(0) deleterious(0.567) NULL SLC41A3 54946 genome.wustl.edu 37 3 125734401 125734401 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008485.1 -1 validated p.I302 1.000 368 0% 197 15.7% 50 40% - - - NULL SLC41A3 54946 genome.wustl.edu 37 3 125775267 125775267 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008487.1 -1 validated p.V43 0.003 146 0% 86 18.6% 0 - - - - NULL ALDH1L1 10840 genome.wustl.edu 37 3 125855629 125855629 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012190.2 -1 reviewed p.T441I 1.000 255 0% 138 21% 0 - probably_damaging(0.991) tolerated(0.27) deleterious(0.478) HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH CCDC37 348807 genome.wustl.edu 37 3 126126042 126126042 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182628.2 +1 validated p.S26I 0.007 288 0% 237 10.5% 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL CCDC37 348807 genome.wustl.edu 37 3 126138607 126138607 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182628.2 +1 validated p.E287K 0.268 84 0% 82 18.3% 2 50% benign(0.02) tolerated(0.46) neutral(0.013) NULL UROC1 131669 genome.wustl.edu 37 3 126208141 126208141 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144639.2 -1 reviewed p.Y562 0.077 167 0% 135 23% 0 - - - - HMMPfam_Urocanase,superfamily_Urocanase UROC1 131669 genome.wustl.edu 37 3 126211274 126211274 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144639.2 -1 reviewed p.C532Y 0.005 85 0% 85 28.2% 0 - benign(0.001) deleterious(0) neutral(0.445) HMMPfam_Urocanase,superfamily_Urocanase UROC1 131669 genome.wustl.edu 37 3 126222857 126222857 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144639.2 -1 reviewed p.R295C 1.000 91 0% 105 25.7% 0 - possibly_damaging(0.938) deleterious(0.01) deleterious(0.789) HMMPfam_Urocanase,superfamily_Urocanase UROC1 131669 genome.wustl.edu 37 3 126236474 126236474 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144639.2 -1 reviewed p.P30H 0.990 24 0% 33 30.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PLXNA1 5361 genome.wustl.edu 37 3 126708351 126708351 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032242.3 +1 validated p.A282 0.140 34 0% 42 16.7% 4 50% - - - HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain PLXNA1 5361 genome.wustl.edu 37 3 126710272 126710272 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032242.3 +1 validated p.P391S 1.000 23 0% 40 20% 5 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain PLXNA1 5361 genome.wustl.edu 37 3 126710345 126710345 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032242.3 +1 validated p.A415V 1.000 17 0% 37 24.3% 1 100% benign(0.033) deleterious(0.04) neutral(0.350) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain PLXNA1 5361 genome.wustl.edu 37 3 126741655 126741655 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032242.3 +1 validated p.F1429 1.000 199 0% 240 22.9% 13 46.1% - - - superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl PLXNA1 5361 genome.wustl.edu 37 3 126747903 126747903 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032242.3 +1 validated p.N1556 0.991 126 0% 121 34.7% 19 57.8% - - - superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl PLXNA1 5361 genome.wustl.edu 37 3 126748852 126748852 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032242.3 +1 validated p.D1646G 1.000 72 0% 44 11.4% 41 41.4% probably_damaging(0.971) deleterious(0) deleterious(0.857) superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl C3orf56 285311 genome.wustl.edu 37 3 126915582 126915582 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398112 +1 known p.F18 0.000 56 0% 63 23.8% 0 - - - - NULL PODXL2 50512 genome.wustl.edu 37 3 127379340 127379340 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015720.2 +1 validated p.H157Y 0.827 198 0.5% 120 31.7% 29 68.9% unknown(0) deleterious(0) - NULL KBTBD12 166348 genome.wustl.edu 37 3 127642395 127642395 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207335.2 +1 validated p.S164I 1.000 141 0% 64 21.9% 0 - possibly_damaging(0.929) tolerated(0.13) deleterious(0.629) HMMPfam_BACK RUVBL1 8607 genome.wustl.edu 37 3 127806666 127806666 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000478892 -1 known p.N145K 0.001 300 0% 211 17.5% 69 100% unknown(0) tolerated(0.65) - HMMPfam_TIP49,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAJB8 165721 genome.wustl.edu 37 3 128181671 128181671 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153330.2 -1 validated p.E140* 0.285 73 0% 72 12.5% 0 - - - - NULL RAB7A 7879 genome.wustl.edu 37 3 128532244 128532244 + Silent SNP G G A rs61748098 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004637.5 +1 reviewed p.S201 0.074 177 0% 66 15.2% 391 36.5% - - - HMMSmart_SM00176 ACAD9 28976 genome.wustl.edu 37 3 128603565 128603565 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014049.4 +1 reviewed p.V74M 0.041 286 0% 315 21.3% 11 45.4% benign(0.127) tolerated(0.06) neutral(0.333) HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM ACAD9 28976 genome.wustl.edu 37 3 128627872 128627872 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014049.4 +1 reviewed p.R472Q 0.180 44 0% 55 20% 51 37.2% probably_damaging(0.987) tolerated(0.37) neutral(0.456) NULL RAB43 339122 genome.wustl.edu 37 3 128810091 128810091 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198490.1 -1 validated p.A163T 0.995 85 0% 97 20.6% 21 38% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases CNBP 7555 genome.wustl.edu 37 3 128889344 128889344 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127192.1 -1 reviewed p.G164 1.000 239 0% 151 28.5% 291 3.7% - - - HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains C3orf37 56941 genome.wustl.edu 37 3 129017317 129017317 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006109.1 +1 validated p.L192M 0.569 277 0% 128 25% 107 31.7% probably_damaging(1) tolerated(0.3) deleterious(0.528) HMMPfam_DUF159 C3orf37 56941 genome.wustl.edu 37 3 129023554 129023554 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006109.1 +1 validated p.Q317 0.972 284 0% 218 20.2% 100 35% - - - NULL C3orf25 90288 genome.wustl.edu 37 3 129137290 129137290 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000326085 -1 known p.K163R 0.004 107 0% 52 17.3% 0 - possibly_damaging(0.707) tolerated(0.29) neutral(0.284) NULL LOC100288961 100288961 genome.wustl.edu 37 3 129140492 129140492 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342397.1 +1 model p.L80M 0.000 305 0% 187 14.4% 0 - possibly_damaging(0.519) tolerated(0.12) neutral(0.435) NULL IFT122 55764 genome.wustl.edu 37 3 129226560 129226560 + Frame_Shift_Del DEL T T - novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052985.2 +1 reviewed p.L999fs 0.999 - - - - - - - - - NULL IFT122 55764 genome.wustl.edu 37 3 129236313 129236313 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052985.2 +1 reviewed p.D1140 1.000 172 0% 169 24.3% 24 62.5% - - - NULL PLXND1 23129 genome.wustl.edu 37 3 129285412 129285412 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015103.2 -1 validated p.S1383R 0.897 124 0% 164 28.7% 38 15.7% benign(0.01) tolerated(0.23) neutral(0.042) HMMPfam_Plexin_cytopl PLXND1 23129 genome.wustl.edu 37 3 129294312 129294312 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015103.2 -1 validated p.V844F 1.000 41 0% 43 11.6% 14 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL ALG1L2 644974 genome.wustl.edu 37 3 129812003 129812003 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136152.1 +1 validated p.G105C 1.000 338 0% 370 15.7% 0 - - - - HMMPfam_Glycos_transf_1 COL6A6 131873 genome.wustl.edu 37 3 130284398 130284398 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102608.1 +1 provisional p.R408W 0.408 131 0% 120 24.2% 0 - probably_damaging(1) - - superfamily_vWA-like COL6A6 131873 genome.wustl.edu 37 3 130300513 130300513 + Missense_Mutation SNP G G A rs141159632 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102608.1 +1 provisional p.R1219H 0.992 357 0% 140 11.4% 0 - benign(0.007) - - HMMSmart_SM00327,superfamily_vWA-like COL6A6 131873 genome.wustl.edu 37 3 130368383 130368383 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102608.1 +1 provisional p.P1904S 0.999 65 0% 39 28.2% 0 - possibly_damaging(0.643) - - HMMSmart_SM00327,superfamily_vWA-like COL6A6 131873 genome.wustl.edu 37 3 130394106 130394106 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102608.1 +1 provisional p.F2219 0.921 306 0% 85 16.5% 0 - - - - NULL PIK3R4 30849 genome.wustl.edu 37 3 130452904 130452904 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014602.2 -1 validated p.G313V 1.000 53 0% 45 13.3% 7 57.1% possibly_damaging(0.909) deleterious(0) deleterious(0.806) superfamily_ARM-type_fold PIK3R4 30849 genome.wustl.edu 37 3 130463488 130463488 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014602.2 -1 validated p.R192M 1.000 472 0% 239 25.1% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,superfamily_Kinase_like ATP2C1 27032 genome.wustl.edu 37 3 130686224 130686224 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000504612 +1 known p.G377E 0.998 315 0% 116 17.2% 29 24.1% - - - HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M ATP2C1 27032 genome.wustl.edu 37 3 130716497 130716497 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001486.1 +1 reviewed p.R764H 1.000 482 0% 165 21.2% 55 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M ASTE1 28990 genome.wustl.edu 37 3 130733028 130733028 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014065.2 -1 validated p.T638I 0.000 143 0% 90 17.8% 16 37.5% benign(0.001) tolerated(0.23) neutral(0.042) NULL LOC100289095 100289095 genome.wustl.edu 37 3 131245423 131245423 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342398.1 +1 model p.L41 0.462 79 0% 66 12.1% 7 0% - - - NULL LOC100289095 100289095 genome.wustl.edu 37 3 131245503 131245503 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342398.1 +1 model p.Q67H 0.275 144 0% 119 15.1% 2 0% - - - NULL ACPP 55 genome.wustl.edu 37 3 132086623 132086623 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134194.1 +1 reviewed p.R405H 0.289 692 0% 360 23.1% 2 50% benign(0.003) deleterious(0.03) neutral(0.364) NULL DNAJC13 23317 genome.wustl.edu 37 3 132218072 132218072 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015268.3 +1 validated p.P1420L 1.000 296 0% 59 33.9% 7 28.5% benign(0.221) tolerated(0.14) neutral(0.272) superfamily_ARM repeat DNAJC13 23317 genome.wustl.edu 37 3 132235294 132235294 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015268.3 +1 validated p.Y1838 1.000 506 0% 117 23.9% 20 45% - - - superfamily_ARM repeat DNAJC13 23317 genome.wustl.edu 37 3 132241775 132241775 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015268.3 +1 validated p.P1926H 1.000 132 0% 40 27.5% 19 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat CCRL1 51554 genome.wustl.edu 37 3 132319920 132319920 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016557.2 +1 reviewed p.L227F 0.981 139 0% 58 22.4% 7 57.1% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_7tm_1,superfamily_SSF81321 CCRL1 51554 genome.wustl.edu 37 3 132320115 132320115 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016557.2 +1 reviewed p.A292T 0.999 379 0% 120 19.2% 12 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_SSF81321 UBA5 79876 genome.wustl.edu 37 3 132390941 132390941 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024818.3 +1 reviewed p.L244 1.000 277 0% 127 23.6% 24 37.5% - - - superfamily_MoeB NPHP3 27031 genome.wustl.edu 37 3 132400931 132400931 + Nonstop_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000512094 -1 known p.*88R 1.000 312 0% 142 23.2% 6 50% - - - NULL NPHP3 27031 genome.wustl.edu 37 3 132405172 132405172 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153240.3 -1 reviewed p.K1087 1.000 303 0% 158 22.2% 8 37.5% - - - superfamily_TPR-like TMEM108 66000 genome.wustl.edu 37 3 133099057 133099057 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136469.1 +1 validated p.P168S 0.425 19 0% 35 28.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TOPBP1 11073 genome.wustl.edu 37 3 133368630 133368630 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007027.3 -1 reviewed p.A416V 0.011 259 0% 154 26% 5 40% benign(0) tolerated(0.28) neutral(0.032) HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain SRPRB 58477 genome.wustl.edu 37 3 133538578 133538578 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021203.3 +1 reviewed p.D262Y 1.000 138 0% 90 24.4% 103 32% possibly_damaging(0.617) deleterious(0.04) deleterious(0.564) superfamily_P-loop containing nucleoside triphosphate hydrolases KY 339855 genome.wustl.edu 37 3 134343959 134343959 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178554.4 -1 validated p.S140Y 0.997 231 0% 105 28.6% 0 - probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL EPHB1 2047 genome.wustl.edu 37 3 134670764 134670764 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004441.4 +1 reviewed p.C225 1.000 268 0% 68 20.6% 0 - - - - NULL EPHB1 2047 genome.wustl.edu 37 3 134911645 134911645 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004441.4 +1 reviewed p.A704T 0.998 376 0% 109 20.2% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) EPHB1 2047 genome.wustl.edu 37 3 134967276 134967276 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004441.4 +1 reviewed p.A872V 0.995 100 0% 23 26.1% 1 0% benign(0.028) tolerated(0.12) neutral(0.262) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) PPP2R3A 5523 genome.wustl.edu 37 3 135721536 135721536 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002718.3 +1 reviewed p.T399N 0.004 214 0% 72 19.4% 1 0% benign(0.009) deleterious(0.02) neutral(0.384) NULL MSL2 55167 genome.wustl.edu 37 3 135870274 135870274 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018133.3 -1 validated p.C483 1.000 135 0% 71 15.5% 13 30.7% - - - NULL STAG1 10274 genome.wustl.edu 37 3 136162174 136162174 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005862.2 -1 reviewed p.C501G 1.000 531 0% 252 15.5% 8 50% possibly_damaging(0.736) tolerated(0.17) neutral(0.328) superfamily_ARM-type_fold STAG1 10274 genome.wustl.edu 37 3 136196168 136196168 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005862.2 -1 reviewed p.S330N 1.000 494 0% 301 22.3% 4 75% probably_damaging(0.976) deleterious(0) deleterious(0.863) superfamily_ARM-type_fold NCK1 4690 genome.wustl.edu 37 3 136665108 136665108 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006153.3 +1 reviewed p.D304Y 1.000 134 0% 58 24.1% 46 43.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550 A4GNT 51146 genome.wustl.edu 37 3 137843221 137843221 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016161.2 -1 reviewed p.G303E 0.978 286 0.3% 502 21.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Gb3_synth A4GNT 51146 genome.wustl.edu 37 3 137843440 137843440 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016161.2 -1 reviewed p.R230M 0.842 256 0% 295 25.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Gb3_synth NME9 347736 genome.wustl.edu 37 3 138033192 138033192 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000474690 -1 known p.W78* 0.015 625 0% 299 22.4% 0 - benign(0.418) tolerated(0.54) neutral(0.143) NULL ESYT3 83850 genome.wustl.edu 37 3 138191404 138191404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031913.3 +1 validated p.T647I 0.001 198 0.5% 107 23.4% 0 - benign(0.001) tolerated(0.53) neutral(0.007) NULL CEP70 80321 genome.wustl.edu 37 3 138256090 138256090 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024491.2 -1 validated p.R189C 0.478 452 0% 312 18.6% 9 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PRR23A 729627 genome.wustl.edu 37 3 138724917 138724917 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134659.1 -1 validated p.A65V 0.001 12 0.000 9 0.444 0 - benign(0.328) deleterious(0.04) neutral(0.452) HMMPfam_DUF2476 MRPS22 56945 genome.wustl.edu 37 3 139071620 139071620 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020191.2 +1 reviewed p.Q288H 1.000 494 0% 207 20.3% 117 45.2% possibly_damaging(0.86) deleterious(0.03) deleterious(0.697) HMMPfam_MRP-S22 COPB2 9276 genome.wustl.edu 37 3 139077108 139077108 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000503326 -1 known p.*67R 1.000 328 0% 103 25.2% 231 41.1% - - - NULL TRIM42 287015 genome.wustl.edu 37 3 140397148 140397148 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152616.3 +1 reviewed p.C26Y 1.000 389 0% 263 17.9% 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL TRIM42 287015 genome.wustl.edu 37 3 140401946 140401946 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152616.3 +1 reviewed p.D328 0.566 245 0% 167 24.6% 0 - - - - NULL SLC25A36 55186 genome.wustl.edu 37 3 140692598 140692598 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001104647.1 +1 validated p.R165C 1.000 197 0% 86 16.3% 8 25% probably_damaging(0.989) deleterious(0) deleterious(0.884) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr ZBTB38 253461 genome.wustl.edu 37 3 141162656 141162656 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080412.2 +1 validated p.R476* 1.000 196 0% 75 25.3% 6 16.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZBTB38 253461 genome.wustl.edu 37 3 141164706 141164706 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080412.2 +1 validated p.G1159D 0.003 171 0% 84 26.2% 5 20% benign(0.001) tolerated(0.36) neutral(0.020) NULL RASA2 5922 genome.wustl.edu 37 3 141289844 141289844 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006506.2 +1 reviewed p.D318 0.994 118 0% 66 21.2% 1 100% - - - HMMSmart_RasGAP RASA2 5922 genome.wustl.edu 37 3 141327346 141327346 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006506.2 +1 reviewed p.H678Y 0.999 269 0% 68 27.9% 1 100% possibly_damaging(0.872) deleterious(0.02) deleterious(0.722) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 GK5 256356 genome.wustl.edu 37 3 141884613 141884613 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039547.2 -1 validated e16-1 1.000 359 0% 339 11.2% 0 - - - - - GK5 256356 genome.wustl.edu 37 3 141900339 141900339 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039547.2 -1 validated p.D338Y 1.000 189 0% 111 25.2% 3 66.6% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_FGGY_C,superfamily_Actin-like ATPase domain XRN1 54464 genome.wustl.edu 37 3 142095330 142095330 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019001.3 -1 validated p.S941Y 1.000 131 0% 97 23.7% 2 50% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL ATR 545 genome.wustl.edu 37 3 142171992 142171992 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001184.3 -1 reviewed p.T2580N 1.000 520 0% 552 20.3% 29 34.4% unknown(0) - - HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like) ATR 545 genome.wustl.edu 37 3 142215300 142215300 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001184.3 -1 reviewed p.A1934D 1.000 174 0% 94 19.1% 10 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FAT,superfamily_ARM repeat,superfamily_TPR-like ATR 545 genome.wustl.edu 37 3 142222256 142222256 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001184.3 -1 reviewed p.L1746I 1.000 115 0% 74 21.6% 2 50% probably_damaging(0.994) deleterious(0.02) deleterious(0.835) superfamily_ARM repeat,superfamily_TPR-like ATR 545 genome.wustl.edu 37 3 142268448 142268448 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001184.3 -1 reviewed p.R1015Q 1.000 165 0% 50 16% 1 100% possibly_damaging(0.946) tolerated(0.36) neutral(0.410) superfamily_ARM repeat ATR 545 genome.wustl.edu 37 3 142278203 142278203 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001184.3 -1 reviewed p.T541I 0.984 392 0% 300 16.3% 0 - probably_damaging(0.99) tolerated(0.48) neutral(0.452) superfamily_ARM repeat PCOLCE2 26577 genome.wustl.edu 37 3 142542389 142542389 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013363.3 -1 validated p.C312R 1.000 239 0% 160 24.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643 PAQR9 344838 genome.wustl.edu 37 3 142681791 142681791 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198504.2 -1 validated p.L130M 1.000 41 0% 47 31.9% 0 - possibly_damaging(0.826) tolerated(0.09) deleterious(0.610) HMMPfam_HlyIII PAQR9 344838 genome.wustl.edu 37 3 142681897 142681897 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198504.2 -1 validated p.L94 1.000 110 0% 136 12.5% 0 - - - - HMMPfam_HlyIII U2SURP 23350 genome.wustl.edu 37 3 142741830 142741830 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080415.1 +1 provisional p.A385V 1.000 194 0% 76 18.4% 19 52.6% probably_damaging(0.974) deleterious(0) deleterious(0.861) superfamily_RNA-binding domain RBD CHST2 9435 genome.wustl.edu 37 3 142840520 142840520 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004267.3 +1 validated p.L288M 1.000 25 0% 25 24% 18 33.3% probably_damaging(0.996) deleterious(0.05) deleterious(0.807) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC9A9 285195 genome.wustl.edu 37 3 143371135 143371135 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173653.3 -1 reviewed p.E239 0.996 156 0% 30 23.3% 1 0% - - - HMMPfam_Na_H_Exchanger C3orf58 205428 genome.wustl.edu 37 3 143708674 143708674 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173552.3 +1 validated p.N428 0.971 147 0% 122 15.6% 3 0% - - - NULL PLOD2 5352 genome.wustl.edu 37 3 145788560 145788560 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182943.2 -1 reviewed p.G741* 1.000 237 0% 53 13.2% 2 0% - - - HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc PLOD2 5352 genome.wustl.edu 37 3 145796908 145796908 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182943.2 -1 reviewed p.E499* 1.000 424 0% 154 25.3% 1 0% - - - NULL ZIC4 84107 genome.wustl.edu 37 3 147113887 147113887 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000383075 -1 known p.T147I 1.000 71 0% 65 32.3% 0 - benign(0.053) tolerated(0.07) neutral(0.323) HMMSmart_SM00355 ZIC1 7545 genome.wustl.edu 37 3 147131304 147131304 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003412.3 +1 reviewed p.A437V 1.000 423 0% 383 19.6% 1 0% benign(0) tolerated(0.2) neutral(0.049) NULL CPB1 1360 genome.wustl.edu 37 3 148545843 148545843 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001871.2 +1 reviewed p.R42 0.000 354 0% 116 31% 0 - - - - HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors CPA3 1359 genome.wustl.edu 37 3 148603900 148603900 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001870.2 +1 reviewed p.G334 0.133 384 0% 146 24.7% 2 0% - - - HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases HLTF 6596 genome.wustl.edu 37 3 148778437 148778437 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003071.3 -1 reviewed p.R426S 0.002 429 0% 384 11.5% 4 0% benign(0.269) tolerated(0.14) neutral(0.278) HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases HPS3 84343 genome.wustl.edu 37 3 148857833 148857833 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032383.3 +1 reviewed p.F87C 0.909 186 0% 108 25% 6 66.6% probably_damaging(0.989) tolerated(0.06) deleterious(0.762) NULL CP 1356 genome.wustl.edu 37 3 148905969 148905969 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000096.3 -1 reviewed p.F578L 1.000 291 0% 91 20.9% 47 51% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) superfamily_Cupredoxins CP 1356 genome.wustl.edu 37 3 148928166 148928166 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000096.3 -1 reviewed p.G132V 1.000 448 0% 205 23.9% 30 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Cupredoxins RNF13 11342 genome.wustl.edu 37 3 149638969 149638969 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007282.4 +1 reviewed p.R219C 1.000 123 0% 53 22.6% 34 14.7% possibly_damaging(0.541) tolerated(0.05) deleterious(0.529) NULL TSC22D2 9819 genome.wustl.edu 37 3 150127166 150127166 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014779.2 +1 provisional p.S10N 1.000 41 0% 65 16.9% 7 28.5% benign(0.119) deleterious(0) neutral(0.454) NULL EIF2A 83939 genome.wustl.edu 37 3 150290114 150290114 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032025.3 +1 validated p.G394D 1.000 287 0% 117 25.6% 66 42.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_eIF2A ENSG00000198843 0 genome.wustl.edu 37 3 150340841 150340841 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000361622 +1 known p.S87Y 1.000 341 0% 364 22.3% 74 31% probably_damaging(0.964) deleterious(0.02) deleterious(0.789) HMMPfam_SelT FAM194A 131831 genome.wustl.edu 37 3 150421596 150421596 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152394.3 -1 validated p.E30D 0.000 235 0% 218 17% 1 0% benign(0.071) tolerated(0.55) neutral(0.012) NULL MED12L 116931 genome.wustl.edu 37 3 150877665 150877665 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053002.4 +1 reviewed p.A295V 1.000 196 0% 131 22.1% 0 - probably_damaging(0.999) tolerated(0.14) deleterious(0.740) NULL MED12L 116931 genome.wustl.edu 37 3 150908597 150908597 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053002.4 +1 reviewed p.A616V 0.959 347 0.3% 89 20.2% 0 - benign(0.311) tolerated(0.42) neutral(0.111) NULL P2RY14 9934 genome.wustl.edu 37 3 150931158 150931158 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081455.1 -1 reviewed p.A316D 0.000 411 0% 129 20.9% 2 50% benign(0.006) tolerated(0.08) neutral(0.300) superfamily_Family A G protein-coupled receptor-like GPR87 53836 genome.wustl.edu 37 3 151012351 151012351 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023915.3 -1 validated p.A228V 1.000 227 0% 58 15.5% 0 - benign(0.008) tolerated(1) - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like IGSF10 285313 genome.wustl.edu 37 3 151154992 151154992 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178822.4 -1 validated p.H2453Y 1.000 274 0% 173 31.2% 0 - probably_damaging(0.993) tolerated(0.21) deleterious(0.494) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin MBNL1 4154 genome.wustl.edu 37 3 152177110 152177110 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207293.1 +1 validated p.Q387 1.000 199 0% 133 22.6% 20 25% - - - NULL C3orf79 152118 genome.wustl.edu 37 3 153202406 153202406 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101337.1 +1 provisional p.W21R 0.001 378 0.3% 130 12.3% 0 - unknown(0) - - NULL GPR149 344758 genome.wustl.edu 37 3 154138928 154138928 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001038705.1 -1 provisional p.S508Y 0.099 412 0% 298 13.8% 0 - benign(0) tolerated(0.08) neutral(0.300) NULL GPR149 344758 genome.wustl.edu 37 3 154147337 154147337 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001038705.1 -1 provisional p.T23M 1.000 157 0% 212 18.9% 0 - probably_damaging(0.997) tolerated(0.21) deleterious(0.510) NULL PLCH1 23007 genome.wustl.edu 37 3 155232616 155232616 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130960.1 -1 validated p.L498M 0.406 358 0% 232 12.9% 4 25% probably_damaging(0.987) deleterious(0.02) deleterious(0.820) superfamily_PLC-like phosphodiesterases KCNAB1 7881 genome.wustl.edu 37 3 155861167 155861167 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003471.3 +1 reviewed p.S67L 0.101 81 0% 41 22% 0 - benign(0.253) deleterious(0.02) neutral(0.409) NULL KCNAB1 7881 genome.wustl.edu 37 3 156249236 156249236 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172160.2 +1 reviewed p.L374 1.000 302 0% 103 28.2% 0 - - - - HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase LEKR1 389170 genome.wustl.edu 37 3 156710979 156710979 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004316.2 +1 validated p.R37I 0.862 243 0% 121 23.1% 0 - probably_damaging(0.959) deleterious(0.04) deleterious(0.752) NULL LEKR1 389170 genome.wustl.edu 37 3 156763153 156763153 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004316.2 +1 validated p.R261C 1.000 231 0% 48 10.4% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL PTX3 5806 genome.wustl.edu 37 3 157154762 157154762 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002852.3 +1 validated p.A14T 0.004 502 0% 659 18.7% 2 50% benign(0.026) tolerated(0.18) neutral(0.057) NULL C3orf55 152078 genome.wustl.edu 37 3 157318170 157318170 + Nonstop_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130001.1 +1 validated p.*134Y 0.004 209 0% 53 13.2% 1 100% - - - NULL SHOX2 6474 genome.wustl.edu 37 3 157818085 157818085 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006884.3 -1 reviewed p.R191* 1.000 458 0.2% 734 21.9% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 GFM1 85476 genome.wustl.edu 37 3 158402436 158402436 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024996.5 +1 reviewed p.G630R 1.000 208 0% 91 20.9% 55 25.4% unknown(0) - - HMMPfam_EFG_IV,superfamily_Ribosomal_S5_D2-typ_fold MFSD1 64747 genome.wustl.edu 37 3 158541309 158541309 + Nonsense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022736.2 +1 validated p.Y390* 1.000 655 0% 289 17.6% 55 10.9% - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter SMC4 10051 genome.wustl.edu 37 3 160141586 160141586 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002800.1 +1 validated p.G761 0.998 389 0% 252 19.8% 35 42.8% - - - HMMPfam_SMC_N,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases SMC4 10051 genome.wustl.edu 37 3 160146550 160146550 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002800.1 +1 validated p.A872D 0.000 225 0% 107 24.3% 27 37% benign(0) tolerated(0.37) neutral(0.019) HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases SMC4 10051 genome.wustl.edu 37 3 160150250 160150250 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002800.1 +1 validated p.A1159 0.910 80 0% 79 31.6% 64 45.3% - - - HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases KPNA4 3840 genome.wustl.edu 37 3 160227610 160227610 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002268.3 -1 reviewed p.T396I 1.000 562 0% 401 23.7% 34 23.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat ARL14 80117 genome.wustl.edu 37 3 160395467 160395467 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025047.2 +1 validated p.E111D 0.545 205 0% 100 21% 1 100% benign(0.095) tolerated(1) neutral(0.007) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases PPM1L 151742 genome.wustl.edu 37 3 160679678 160679678 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139245.2 +1 provisional p.T185N 1.000 217 0% 172 18% 0 - benign(0.011) tolerated(0.4) neutral(0.017) HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C B3GALNT1 8706 genome.wustl.edu 37 3 160803869 160803869 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001038628.1 -1 reviewed p.S225Y 0.999 69 0% 45 13.3% 12 41.6% probably_damaging(0.96) deleterious(0.03) deleterious(0.768) HMMPfam_Galactosyl_T B3GALNT1 8706 genome.wustl.edu 37 3 160804137 160804137 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001038628.1 -1 reviewed p.E136K 1.000 262 0% 152 24.3% 11 54.5% probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_Galactosyl_T SI 6476 genome.wustl.edu 37 3 164776849 164776849 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001041.3 -1 reviewed p.R434* 0.000 366 0% 116 17.2% 0 - - - - HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases SI 6476 genome.wustl.edu 37 3 164785184 164785184 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001041.3 -1 reviewed p.K193N 0.000 291 0% 112 17% 0 - benign(0.061) deleterious(0.04) neutral(0.353) NULL SLITRK3 22865 genome.wustl.edu 37 3 164906343 164906343 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014926.2 -1 validated p.R759H 0.951 162 0% 128 24.2% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL BCHE 590 genome.wustl.edu 37 3 165491178 165491178 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000055.2 -1 reviewed p.G601S 0.973 401 0.5% 144 29.9% 1 0% benign(0.002) tolerated(0.39) neutral(0.016) HMMPfam_AChE_tetra ZBBX 79740 genome.wustl.edu 37 3 167023537 167023537 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024687.2 -1 validated p.A540D 0.011 222 0% 149 24.8% 1 100% benign(0.004) tolerated(0.35) neutral(0.021) NULL ZBBX 79740 genome.wustl.edu 37 3 167023551 167023551 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024687.2 -1 validated p.R535S 0.001 228 0% 155 11.6% 0 - benign(0) tolerated(0.08) neutral(0.300) NULL SERPINI2 5276 genome.wustl.edu 37 3 167167147 167167147 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006217.3 -1 reviewed p.F336L 1.000 307 0% 220 24.5% 1 0% benign(0.236) deleterious(0.02) neutral(0.407) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin MECOM 2122 genome.wustl.edu 37 3 168830627 168830627 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000494292 -1 known p.A842D 1.000 590 0% 279 20.4% 45 46.6% possibly_damaging(0.906) tolerated(0.12) deleterious(0.620) NULL LRRC31 79782 genome.wustl.edu 37 3 169579529 169579529 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024727.2 -1 validated p.G83D 0.954 474 0.4% 254 20.1% 0 - probably_damaging(0.995) tolerated(0.36) deleterious(0.478) NULL SEC62 7095 genome.wustl.edu 37 3 169694783 169694783 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003262.3 +1 reviewed p.K65 1.000 228 0% 228 27.2% 35 28.5% - - - NULL SEC62 7095 genome.wustl.edu 37 3 169710756 169710756 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003262.3 +1 reviewed p.E369K 1.000 222 0% 69 27.5% 74 31% possibly_damaging(0.945) deleterious(0.03) deleterious(0.754) NULL PHC3 80012 genome.wustl.edu 37 3 169889124 169889124 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000497658 -1 known p.F139L 0.084 60 0% 75 13.3% 0 - benign(0.053) - - NULL PHC3 80012 genome.wustl.edu 37 3 169896637 169896637 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024947.3 -1 validated p.T35I 0.989 286 0% 354 24.9% 0 - possibly_damaging(0.922) deleterious(0) deleterious(0.816) NULL RPL22L1 200916 genome.wustl.edu 37 3 170585875 170585875 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099645.1 -1 validated p.L51I 1.000 342 0% 326 16.9% 138 39.8% possibly_damaging(0.773) deleterious(0) deleterious(0.732) HMMPfam_Ribosomal_L22e PLD1 5337 genome.wustl.edu 37 3 171330197 171330197 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000446289 -1 known p.A181V 1.000 230 0% 81 18.5% 2 0% - - - HMMPfam_PLDc,HMMSmart_SM00155,superfamily_Phospholipase D/nuclease GHSR 2693 genome.wustl.edu 37 3 172166029 172166029 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198407.2 -1 reviewed p.A59T 0.893 17 0% 23 30.4% 0 - benign(0.001) tolerated(1) - superfamily_Family A G protein-coupled receptor-like GHSR 2693 genome.wustl.edu 37 3 172166098 172166098 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198407.2 -1 reviewed p.Q36* 0.012 17 0% 21 33.3% 0 - - - - superfamily_Family A G protein-coupled receptor-like NLGN1 22871 genome.wustl.edu 37 3 173996697 173996697 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014932.2 +1 reviewed p.S302 1.000 211 0% 94 13.8% 0 - - - - HMMPfam_COesterase,superfamily_SSF53474 NAALADL2 254827 genome.wustl.edu 37 3 174814660 174814660 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207015.2 +1 validated p.Q42* 1.000 114 0% 64 20.3% 0 - - - - NULL TBL1XR1 79718 genome.wustl.edu 37 3 176767841 176767841 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024665.4 -1 reviewed p.R216 1.000 388 0% 152 26.3% 19 26.3% - - - HMMSmart_WD40 TBL1XR1 79718 genome.wustl.edu 37 3 176769462 176769462 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024665.4 -1 reviewed p.A86D 1.000 227 0% 108 23.1% 12 41.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ZMAT3 64393 genome.wustl.edu 37 3 178785519 178785519 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022470.3 -1 reviewed p.V8M 0.864 398 0% 408 20.6% 1 0% benign(0.003) tolerated(0.28) neutral(0.032) NULL PIK3CA 5290 genome.wustl.edu 37 3 178921544 178921544 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006218.2 +1 reviewed p.T342 0.733 153 0% 139 23% 3 100% - - - HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB KCNMB3 27094 genome.wustl.edu 37 3 178962304 178962304 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014407.3 -1 reviewed p.E146D 1.000 249 0% 129 9.3% 4 25% possibly_damaging(0.495) tolerated(0.29) neutral(0.194) HMMPfam_CaKB MFN1 55669 genome.wustl.edu 37 3 179107920 179107920 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033540.2 +1 reviewed p.L714R 0.039 173 0% 143 21.7% 18 55.5% possibly_damaging(0.951) tolerated(0.15) deleterious(0.635) HMMPfam_Fzo_mitofusin GNB4 59345 genome.wustl.edu 37 3 179138686 179138686 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021629.3 -1 reviewed p.T29 0.021 259 0.4% 71 25.4% 0 - - - - superfamily_WD40 repeat-like MRPL47 57129 genome.wustl.edu 37 3 179311580 179311580 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020409.2 -1 reviewed p.R169I 1.000 256 0% 172 24.4% 158 39.8% probably_damaging(0.996) tolerated(0.55) deleterious(0.469) NULL CCDC39 339829 genome.wustl.edu 37 3 180361935 180361935 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181426.1 -1 validated p.E546 1.000 642 0% 368 13% 0 - - - - NULL FXR1 8087 genome.wustl.edu 37 3 180671624 180671624 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005087.2 +1 reviewed p.L292 0.939 766 0% 280 25.7% 75 45.3% - - - HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) FXR1 8087 genome.wustl.edu 37 3 180687964 180687964 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005087.2 +1 reviewed p.S474N 1.000 216 0% 54 14.8% 191 45% benign(0.007) tolerated(0.11) neutral(0.272) NULL MCF2L2 23101 genome.wustl.edu 37 3 182948794 182948794 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015078.2 -1 validated p.R625H 0.006 539 0% 201 19.4% 1 0% benign(0.001) tolerated(0.14) neutral(0.249) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) B3GNT5 84002 genome.wustl.edu 37 3 182987968 182987968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032047.4 +1 reviewed p.L128M 0.996 204 0% 117 12.8% 4 0% possibly_damaging(0.882) tolerated(0.08) deleterious(0.644) HMMPfam_Galactosyl_T MCF2L2 23101 genome.wustl.edu 37 3 182994688 182994688 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015078.2 -1 validated p.A612S 0.000 45 0% 31 19.4% 1 0% benign(0.273) tolerated(0.48) neutral(0.040) superfamily_DBL homology domain (DH-domain) KLHL6 89857 genome.wustl.edu 37 3 183273167 183273167 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130446.2 -1 validated p.A92V 1.000 170 0% 104 20.2% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB PARL 55486 genome.wustl.edu 37 3 183580483 183580483 + Splice_Site SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000421484 -1 known e4+2 1.000 247 0% 86 19.8% 0 - - - - - ABCC5 10057 genome.wustl.edu 37 3 183639177 183639177 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005688.2 -1 reviewed p.D1409N 1.000 142 0% 95 22.1% 6 0% probably_damaging(1) deleterious(0.05) deleterious(0.845) superfamily_P-loop containing nucleoside triphosphate hydrolases ABCC5 10057 genome.wustl.edu 37 3 183643385 183643385 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005688.2 -1 reviewed p.T1390 0.058 385 0% 238 13% 7 14.2% - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCC5 10057 genome.wustl.edu 37 3 183700708 183700708 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005688.2 -1 reviewed p.L227 0.994 186 0% 57 26.3% 2 50% - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC5 10057 genome.wustl.edu 37 3 183707159 183707159 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005688.2 -1 reviewed p.D48Y 1.000 114 0% 39 23.1% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL HTR3D 200909 genome.wustl.edu 37 3 183754577 183754577 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145143.1 +1 reviewed p.H137Y 0.007 168 0% 95 22.1% 0 - benign(0.119) deleterious(0.04) neutral(0.358) NULL HTR3D 200909 genome.wustl.edu 37 3 183755837 183755837 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145143.1 +1 reviewed p.S182N 0.362 172 0% 93 19.4% 0 - benign(0.068) tolerated(0.19) neutral(0.054) superfamily_Neurotransmitter-gated ion-channel transmembrane pore HTR3C 170572 genome.wustl.edu 37 3 183774818 183774818 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130770.2 +1 reviewed p.S182Y 0.763 416 0% 207 15.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD EIF2B5 8893 genome.wustl.edu 37 3 183855751 183855751 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003907.2 +1 reviewed p.S191I 1.000 120 0% 108 20.4% 25 20% benign(0.219) tolerated(0.05) neutral(0.367) superfamily_SSF53448 AP2M1 1173 genome.wustl.edu 37 3 183898471 183898471 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431779 +1 known p.S154R 0.078 374 0% 451 19.3% 0 - unknown(0) deleterious(0.01) - NULL VWA5B2 90113 genome.wustl.edu 37 3 183952114 183952114 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138345.1 +1 provisional p.A250V 1.000 78 0% 120 23.3% 1 100% probably_damaging(0.99) tolerated(0.16) deleterious(0.501) NULL VWA5B2 90113 genome.wustl.edu 37 3 183956622 183956622 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138345.1 +1 provisional p.R721 0.091 26 0% 43 14% 0 - - - - NULL ECE2 9718 genome.wustl.edu 37 3 183976235 183976235 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032331.3 +1 validated p.G214S 1.000 83 0% 120 19.2% 90 43.3% possibly_damaging(0.94) tolerated(0.11) deleterious(0.657) superfamily_SSF53335 PSMD2 5708 genome.wustl.edu 37 3 184020548 184020548 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002808.3 +1 reviewed p.E315D 0.999 345 0% 343 15.7% 107 43.9% benign(0.001) tolerated(0.41) neutral(0.015) superfamily_ARM-type_fold EIF4G1 1981 genome.wustl.edu 37 3 184044716 184044716 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182917.3 +1 reviewed p.A1125S 1.000 314 0% 331 24.8% 189 41.2% probably_damaging(0.987) tolerated(0.07) deleterious(0.756) NULL CLCN2 1181 genome.wustl.edu 37 3 184071135 184071135 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004366.4 -1 reviewed p.R644H 1.000 58 0% 42 16.7% 7 57.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_CBS CLCN2 1181 genome.wustl.edu 37 3 184071983 184071983 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004366.4 -1 reviewed p.A543T 1.000 129 0% 82 9.8% 7 71.4% probably_damaging(0.987) tolerated(0.06) deleterious(0.759) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel THPO 7066 genome.wustl.edu 37 3 184090547 184090547 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452754 -1 known p.G267* 0.000 613 0.2% 522 23.2% 0 - - - - NULL CHRD 8646 genome.wustl.edu 37 3 184102473 184102473 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003741.2 +1 reviewed p.R530H 1.000 28 0% 44 29.5% 5 0% benign(0.364) deleterious(0.03) deleterious(0.480) NULL EPHB3 2049 genome.wustl.edu 37 3 184290849 184290849 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004443.3 +1 reviewed p.E247D 1.000 39 0% 59 30.5% 0 - probably_damaging(0.995) tolerated(0.05) deleterious(0.803) NULL EPHB3 2049 genome.wustl.edu 37 3 184297350 184297350 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004443.3 +1 reviewed p.D629 0.839 202 0% 227 25.6% 3 0% - - - superfamily_Kinase_like C3orf70 285382 genome.wustl.edu 37 3 184801072 184801072 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025266.1 -1 predicted p.P159L 1.000 290 0% 109 18.3% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL EHHADH 1962 genome.wustl.edu 37 3 184922307 184922307 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001966.3 -1 reviewed p.Q269 0.999 141 0% 43 16.3% 4 25% - - - superfamily_SSF52096 MAP3K13 9175 genome.wustl.edu 37 3 185184657 185184657 + Nonsense_Mutation SNP C C T rs56408536 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004721.3 +1 reviewed p.R517* 1.000 273 0.4% 70 22.9% 1 0% - - - NULL MAP3K13 9175 genome.wustl.edu 37 3 185191357 185191357 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004721.3 +1 reviewed p.P746 0.006 64 0% 30 16.7% 1 0% - - - NULL LIPH 200879 genome.wustl.edu 37 3 185232257 185232257 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000435679 -1 known p.G23E 0.068 1048 0% 464 10.6% 0 - - - - NULL LIPH 200879 genome.wustl.edu 37 3 185241934 185241934 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139248.2 -1 reviewed p.E215K 0.215 430 0% 223 26.5% 0 - benign(0.002) tolerated(0.69) neutral(0.002) HMMPfam_Lipase,superfamily_SSF53474 TBCCD1 55171 genome.wustl.edu 37 3 186274539 186274539 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134415.1 -1 validated p.A173D 0.093 162 0.6% 121 24% 5 40% benign(0.118) tolerated(0.65) neutral(0.013) NULL TBCCD1 55171 genome.wustl.edu 37 3 186276352 186276352 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134415.1 -1 validated p.D116Y 1.000 232 0% 189 20.6% 12 41.6% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL DNAJB11 51726 genome.wustl.edu 37 3 186289925 186289925 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016306.4 +1 validated p.S37Y 1.000 168 0% 303 20.8% 92 33.6% benign(0.241) deleterious(0.01) neutral(0.430) HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain HRG 3273 genome.wustl.edu 37 3 186386777 186386777 + Silent SNP G G A rs143118011 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000412.2 +1 reviewed p.S79 0.008 204 0% 63 20.6% 0 - - - - HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin ENSG00000200418 0 genome.wustl.edu 37 3 186504132 186504132 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000363548 +1 novel NULL 0.329 243 0% 236 26.7% 1 0% - - - - EIF4A2 1974 genome.wustl.edu 37 3 186504412 186504412 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001967.3 +1 validated p.F250C 1.000 472 0% 437 11.7% 350 26% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases EIF4A2 1974 genome.wustl.edu 37 3 186506991 186506991 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001967.3 +1 validated p.R386H 1.000 399 0% 334 21.3% 590 37.1% benign(0.222) deleterious(0.01) neutral(0.428) superfamily_P-loop containing nucleoside triphosphate hydrolases ADIPOQ 9370 genome.wustl.edu 37 3 186570917 186570917 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004797.3 +1 reviewed p.G24W 0.000 151 0% 93 20.4% 0 - possibly_damaging(0.952) deleterious(0.01) deleterious(0.801) NULL ST6GAL1 6480 genome.wustl.edu 37 3 186760543 186760543 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003032.2 +1 reviewed p.L18I 1.000 312 0% 106 16% 20 50% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL ST6GAL1 6480 genome.wustl.edu 37 3 186760790 186760790 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003032.2 +1 reviewed p.S100I 1.000 121 0% 54 16.7% 12 25% probably_damaging(0.991) tolerated(0.5) neutral(0.454) NULL RPL39L 116832 genome.wustl.edu 37 3 186838991 186838991 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052969.1 -1 reviewed p.S33N 1.000 160 0% 56 12.5% 110 46.3% benign(0) tolerated(1) - HMMPfam_Ribosomal_L39,superfamily_Ribosomal_L39,PatternScan_RIBOSOMAL_L39E MASP1 5648 genome.wustl.edu 37 3 186944288 186944288 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001879.5 -1 reviewed p.A488T 0.635 213 0% 133 26.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS BCL6 604 genome.wustl.edu 37 3 187443418 187443418 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130845.1 -1 reviewed e6-1 1.000 255 0% 278 19.8% 0 - - - - - LPP 4026 genome.wustl.edu 37 3 188584083 188584083 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005578.3 +1 reviewed p.C502 0.979 225 0% 93 26.9% 1 0% - - - HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) LEPREL1 55214 genome.wustl.edu 37 3 189706776 189706776 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018192.3 -1 validated p.A292V 1.000 156 0% 77 18.2% 12 16.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_TPR-like CLDN16 10686 genome.wustl.edu 37 3 190106119 190106119 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006580.3 +1 reviewed p.M71L 0.971 671 0% 205 17.6% 2 50% benign(0.002) deleterious(0.01) neutral(0.406) NULL TMEM207 131920 genome.wustl.edu 37 3 190158165 190158165 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207316.1 -1 provisional p.L58M 0.660 42 0% 95 14.7% 0 - probably_damaging(0.991) tolerated(0.09) deleterious(0.740) NULL IL1RAP 3556 genome.wustl.edu 37 3 190366168 190366168 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002182.3 +1 reviewed p.R463C 1.000 106 0% 66 18.2% 9 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain LOC647309 647309 genome.wustl.edu 37 3 190573293 190573293 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342387.1 -1 model p.L26I 0.009 344 0% 249 19.7% 1 100% benign(0.139) tolerated(0.15) neutral(0.253) NULL ATP13A5 344905 genome.wustl.edu 37 3 193002723 193002723 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198505.2 -1 provisional p.R1069Q 1.000 455 0% 125 27.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF81665 ATP13A4 84239 genome.wustl.edu 37 3 193272546 193272546 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032279.2 -1 validated p.G15* 1.000 354 0% 196 25% 0 - - - - NULL OPA1 4976 genome.wustl.edu 37 3 193355014 193355014 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130837.2 +1 reviewed p.L327I 1.000 276 0% 132 11.4% 6 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00053 HES1 3280 genome.wustl.edu 37 3 193855938 193855938 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005524.2 +1 reviewed p.G253 0.933 18 0% 19 36.8% 82 65.8% - - - NULL CPN2 1370 genome.wustl.edu 37 3 194062696 194062696 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080513.2 -1 validated p.L246M 1.000 68 0% 68 10.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like ATP13A3 79572 genome.wustl.edu 37 3 194174446 194174446 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024524.3 -1 validated p.R276K 1.000 491 0% 238 18.5% 3 66.6% probably_damaging(0.994) tolerated(0.74) neutral(0.454) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M ATP13A3 79572 genome.wustl.edu 37 3 194177834 194177834 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024524.3 -1 validated p.M183I 1.000 317 0% 127 16.5% 5 20% benign(0) deleterious(0.01) neutral(0.406) superfamily_Calcium ATPase transmembrane domain M ACAP2 23527 genome.wustl.edu 37 3 195009960 195009960 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012287.5 -1 validated p.G688 1.000 293 0% 167 19.2% 6 33.3% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ACAP2 23527 genome.wustl.edu 37 3 195012456 195012456 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012287.5 -1 validated p.A681V 1.000 273 0% 194 18.6% 6 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ACAP2 23527 genome.wustl.edu 37 3 195015468 195015468 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012287.5 -1 validated p.A582V 1.000 185 0% 113 20.4% 3 66.6% possibly_damaging(0.952) tolerated(0.31) neutral(0.423) NULL APOD 347 genome.wustl.edu 37 3 195300753 195300753 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001647.3 -1 reviewed p.N71 0.988 377 0% 189 25.9% 49 0% - - - superfamily_Lipocalins,HMMPfam_Lipocalin_2 MUC4 4585 genome.wustl.edu 37 3 195487853 195487853 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018406.5 -1 reviewed p.S4789N 0.000 273 0% 304 20.4% 4 100% unknown(0) tolerated(0.49) - NULL MUC4 4585 genome.wustl.edu 37 3 195506458 195506458 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018406.5 -1 reviewed p.A3870V 0.016 147 1.4% 131 6.9% 1 0% probably_damaging(0.959) - - NULL MUC4 4585 genome.wustl.edu 37 3 195514970 195514970 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018406.5 -1 reviewed p.A1161S 0.496 390 0% 190 24.7% 1 0% possibly_damaging(0.748) - - NULL MUC4 4585 genome.wustl.edu 37 3 195517635 195517635 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018406.5 -1 reviewed p.S272 0.000 747 0% 386 22.8% 0 - - - - NULL TNK2 10188 genome.wustl.edu 37 3 195593783 195593783 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010938.1 -1 reviewed p.G1077 0.973 27 0% 55 23.6% 48 14.5% - - - NULL TNK2 10188 genome.wustl.edu 37 3 195594305 195594305 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010938.1 -1 reviewed p.T1018N 0.000 39 0% 21 28.6% 4 25% benign(0.007) deleterious(0.02) neutral(0.383) NULL TFRC 7037 genome.wustl.edu 37 3 195778840 195778840 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128148.1 -1 validated p.D752 1.000 272 0% 187 15.5% 42 21.4% - - - HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain TFRC 7037 genome.wustl.edu 37 3 195800807 195800807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128148.1 -1 validated p.T143I 0.016 205 0% 145 19.3% 24 45.8% benign(0.009) deleterious(0.04) neutral(0.349) superfamily_Zn-dependent exopeptidases ZDHHC19 131540 genome.wustl.edu 37 3 195935287 195935287 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039617.1 -1 validated p.L185M 0.002 234 0% 226 22.6% 0 - probably_damaging(0.996) tolerated(0.11) deleterious(0.733) NULL UBXN7 26043 genome.wustl.edu 37 3 196083703 196083703 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015562.1 -1 validated p.H441 0.800 413 0% 174 21.8% 4 75% - - - HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like FBXO45 200933 genome.wustl.edu 37 3 196311117 196311117 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105573.1 +1 validated p.Y263* 0.998 509 0% 352 16.2% 4 50% - - - HMMPfam_SPRY,HMMSmart_SPRY LRRC33 375387 genome.wustl.edu 37 3 196381459 196381459 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198565.1 +1 provisional p.V17M 0.022 237 0% 251 21.9% 3 0% possibly_damaging(0.437) tolerated(0.05) deleterious(0.488) NULL LRRC33 375387 genome.wustl.edu 37 3 196387809 196387809 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198565.1 +1 provisional p.D432G 0.999 108 0% 88 17% 14 0% probably_damaging(1) tolerated(0.08) deleterious(0.800) superfamily_SSF52058 SENP5 205564 genome.wustl.edu 37 3 196612859 196612859 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152699.4 +1 validated p.Q269H 1.000 87 0% 59 23.7% 1 100% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL SENP5 205564 genome.wustl.edu 37 3 196626836 196626836 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152699.4 +1 validated p.R554I 0.989 255 0% 129 19.4% 6 0% possibly_damaging(0.78) deleterious(0.01) deleterious(0.697) superfamily_Cysteine proteinases PIGZ 80235 genome.wustl.edu 37 3 196674559 196674559 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025163.2 -1 reviewed p.C403 0.042 144 0% 106 23.6% 5 60% - - - HMMPfam_Glyco_transf_22 PIGZ 80235 genome.wustl.edu 37 3 196674708 196674708 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025163.2 -1 reviewed p.L354M 0.000 148 0% 84 25% 9 33.3% benign(0.267) tolerated(0.25) neutral(0.065) HMMPfam_Glyco_transf_22 MFI2 4241 genome.wustl.edu 37 3 196743977 196743977 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005929.4 -1 reviewed p.G299 1.000 24 0% 15 26.7% 6 66.6% - - - HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II KIAA0226 9711 genome.wustl.edu 37 3 197403774 197403774 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000413360 -1 known p.P838T 1.000 130 0% 139 24.5% 3 0% - - - NULL KIAA0226 9711 genome.wustl.edu 37 3 197422755 197422755 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415452 -1 known p.A244V 1.000 306 0% 123 29.3% 6 33.3% - - - NULL FYTTD1 84248 genome.wustl.edu 37 3 197508703 197508703 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032288.6 +1 validated p.R294W 1.000 117 0% 100 22% 36 41.6% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_FYTT LMLN 89782 genome.wustl.edu 37 3 197710884 197710884 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136049.2 +1 reviewed p.L267 1.000 421 0% 284 23.9% 1 100% - - - "HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain" ZNF721 170960 genome.wustl.edu 37 4 435492 435492 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133474.2 -1 validated p.Q922* 0.096 268 0% 141 19.9% 5 60% - - - superfamily_C2H2 and C2HC zinc fingers ZNF721 170960 genome.wustl.edu 37 4 435975 435975 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133474.2 -1 validated p.V761L 0.050 189 0% 99 17.2% 6 16.6% benign(0.222) tolerated(0.08) neutral(0.322) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF721 170960 genome.wustl.edu 37 4 436113 436113 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133474.2 -1 validated p.H715Y 0.478 326 0% 152 20.4% 5 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF721 170960 genome.wustl.edu 37 4 437956 437956 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133474.2 -1 validated p.K100N 0.000 439 0.2% 173 23.1% 0 - benign(0.021) tolerated(0.13) neutral(0.254) superfamily_C2H2 and C2HC zinc fingers MFSD7 84179 genome.wustl.edu 37 4 679887 679887 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032219.2 -1 provisional p.A167T 0.540 46 0% 59 23.7% 6 0% benign(0.395) tolerated(0.07) neutral(0.446) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter PCGF3 10336 genome.wustl.edu 37 4 728734 728734 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006315.4 +1 reviewed p.L42M 1.000 67 0% 100 13% 16 50% probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box PCGF3 10336 genome.wustl.edu 37 4 755105 755105 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006315.4 +1 reviewed p.R167 0.622 96 0% 101 15.8% 22 40.9% - - - NULL GAK 2580 genome.wustl.edu 37 4 862438 862438 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005255.2 -1 validated p.A762T 0.874 18 0% 54 27.8% 42 45.2% probably_damaging(0.992) tolerated(0.18) deleterious(0.504) NULL GAK 2580 genome.wustl.edu 37 4 884341 884341 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005255.2 -1 validated p.A354T 0.000 23 0% 27 25.9% 8 0% benign(0) tolerated(0.78) neutral(0.001) NULL GAK 2580 genome.wustl.edu 37 4 890301 890301 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005255.2 -1 validated p.E230* 1.000 240 0% 312 20.5% 19 15.7% - - - superfamily_Kinase_like,HMMPfam_Pkinase TMEM175 84286 genome.wustl.edu 37 4 945496 945496 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032326.2 +1 provisional p.L123 1.000 162 0% 259 24.3% 62 29% - - - HMMPfam_DUF1211 TMEM175 84286 genome.wustl.edu 37 4 949225 949225 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000505148 +1 known p.P57S 0.993 196 0% 176 10.2% 65 21.5% - - - NULL SLC26A1 10861 genome.wustl.edu 37 4 973201 973201 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134425.1 -1 reviewed p.S223Y 0.049 358 0% 483 21.7% 4 25% possibly_damaging(0.952) - - NULL FGFRL1 53834 genome.wustl.edu 37 4 1017640 1017640 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004356.2 +1 reviewed p.R157C 1.000 16 0% 12 58.3% 12 58.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_I-set,superfamily_SSF48726 FAM53A 152877 genome.wustl.edu 37 4 1643123 1643123 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013622.3 -1 validated p.R365H 0.003 104 0% 94 17% 4 50% benign(0.002) tolerated(0.23) neutral(0.042) NULL TACC3 10460 genome.wustl.edu 37 4 1725498 1725498 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006342.1 +1 reviewed p.I69S 0.018 157 0% 200 23% 48 37.5% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL TACC3 10460 genome.wustl.edu 37 4 1729758 1729758 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006342.1 +1 reviewed p.S210F 0.000 42 0% 50 38% 57 43.8% possibly_damaging(0.819) deleterious(0.04) deleterious(0.658) NULL TACC3 10460 genome.wustl.edu 37 4 1746487 1746487 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006342.1 +1 reviewed p.A793 0.000 30 0% 25 24% 219 44.2% - - - HMMPfam_TACC FGFR3 2261 genome.wustl.edu 37 4 1804671 1804671 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340107 +1 known p.V321M 1.000 22 0% 24 29.2% 0 - benign(0.058) tolerated(0.32) neutral(0.028) HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 FGFR3 2261 genome.wustl.edu 37 4 1807311 1807311 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000142.4 +1 reviewed p.S520 0.059 70 0% 42 14.3% 2 100% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) FGFR3 2261 genome.wustl.edu 37 4 1808652 1808652 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000481110 +1 known p.V733I 0.037 9 0.000 14 0.357 6 33.3% unknown(0) deleterious(0) - HMMSmart_SM00220 POLN 353497 genome.wustl.edu 37 4 2181051 2181051 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181808.2 -1 validated p.S388F 0.661 322 0% 239 19.2% 1 0% possibly_damaging(0.848) deleterious(0.04) deleterious(0.674) superfamily_Ribonuclease H-like POLN 353497 genome.wustl.edu 37 4 2200274 2200274 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181808.2 -1 validated p.Q295H 0.115 113 0% 44 22.7% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_Ribonuclease H-like TNIP2 79155 genome.wustl.edu 37 4 2746219 2746219 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024309.3 -1 validated p.K307N 1.000 255 0% 257 18.7% 73 35.6% possibly_damaging(0.952) tolerated(0.5) neutral(0.406) NULL ADD1 118 genome.wustl.edu 37 4 2916675 2916675 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014189.2 +1 reviewed p.S588N 1.000 211 0% 157 21% 80 35% benign(0.084) tolerated(0.16) neutral(0.066) NULL NOP14 8602 genome.wustl.edu 37 4 2940652 2940652 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003703.1 -1 validated p.A827V 0.954 292 0.3% 462 23.8% 60 41.6% benign(0.389) tolerated(0.23) neutral(0.166) HMMPfam_Nop14 HTT 3064 genome.wustl.edu 37 4 3107155 3107155 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002111.6 +1 reviewed p.Q200H 1.000 343 0% 277 22.4% 2 50% probably_damaging(0.999) tolerated(0.17) deleterious(0.549) superfamily_ARM repeat HTT 3064 genome.wustl.edu 37 4 3131704 3131704 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002111.6 +1 reviewed p.Q599H 0.998 149 0.7% 78 33.3% 2 50% possibly_damaging(0.583) tolerated(0.07) deleterious(0.520) superfamily_ARM repeat HTT 3064 genome.wustl.edu 37 4 3174100 3174100 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002111.6 +1 reviewed p.M1306I 0.606 448 0% 234 25.6% 1 100% benign(0.002) deleterious(0.01) neutral(0.406) superfamily_ARM repeat RGS12 6002 genome.wustl.edu 37 4 3416529 3416529 + Silent SNP C C A rs112156709 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198229.2 +1 reviewed p.A747 1.000 315 0% 475 22.7% 4 50% - - - HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS RGS12 6002 genome.wustl.edu 37 4 3417745 3417745 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198229.2 +1 reviewed p.C775Y 1.000 199 0% 277 19.1% 7 0% benign(0.253) deleterious(0.01) neutral(0.432) HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS RGS12 6002 genome.wustl.edu 37 4 3424132 3424132 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198229.2 +1 reviewed p.E956 0.039 47 0% 51 35.3% 12 58.3% - - - NULL RGS12 6002 genome.wustl.edu 37 4 3424244 3424244 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198229.2 +1 reviewed p.R994W 1.000 42 0% 63 19% 9 0% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_RBD,HMMSmart_SM00455,superfamily_Ubiquitin-like RGS12 6002 genome.wustl.edu 37 4 3430417 3430417 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198229.2 +1 reviewed p.I1182L 1.000 114 0% 170 18.8% 6 50% benign(0.021) tolerated(0.57) neutral(0.007) NULL DOK7 285489 genome.wustl.edu 37 4 3487292 3487292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173660.4 +1 reviewed p.A187T 0.927 38 0% 73 20.5% 39 33.3% benign(0.164) deleterious(0) neutral(0.460) superfamily_PH domain-like ZBTB49 166793 genome.wustl.edu 37 4 4317547 4317547 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145291.3 +1 validated p.F491L 1.000 332 0% 191 17.8% 2 50% benign(0.044) tolerated(0.61) neutral(0.007) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZBTB49 166793 genome.wustl.edu 37 4 4322727 4322727 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145291.3 +1 validated p.P661H 0.023 71 0% 55 16.4% 3 0% benign(0.026) tolerated(0.8) neutral(0.002) NULL STX18 53407 genome.wustl.edu 37 4 4422604 4422604 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016930.2 -1 validated p.E300V 1.000 531 0% 381 22% 484 50.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CRMP1 1400 genome.wustl.edu 37 4 5837779 5837779 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014809.1 -1 reviewed p.A496T 0.997 119 0% 115 18.3% 4 0% benign(0.166) deleterious(0.01) neutral(0.421) HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556 CRMP1 1400 genome.wustl.edu 37 4 5837811 5837811 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014809.1 -1 reviewed p.A485V 1.000 108 0% 83 26.5% 7 14.2% benign(0) tolerated(0.67) neutral(0.003) HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556 CRMP1 1400 genome.wustl.edu 37 4 5844832 5844832 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014809.1 -1 reviewed p.S340 1.000 225 0% 189 16.9% 3 0% - - - HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556 CRMP1 1400 genome.wustl.edu 37 4 5853195 5853195 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014809.1 -1 reviewed p.G274 0.980 278 0.4% 114 21.1% 2 0% - - - HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556 JAKMIP1 152789 genome.wustl.edu 37 4 6055751 6055751 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144720.3 -1 validated p.L611R 1.000 453 0.2% 393 16.3% 8 0% probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL JAKMIP1 152789 genome.wustl.edu 37 4 6062165 6062165 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099433.1 -1 validated p.V544I 0.737 246 0% 189 19% 17 0% benign(0) tolerated(0.35) neutral(0.021) NULL JAKMIP1 152789 genome.wustl.edu 37 4 6081955 6081955 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099433.1 -1 validated p.E396K 1.000 93 0% 45 24.4% 5 0% probably_damaging(0.99) tolerated(0.23) deleterious(0.483) NULL WFS1 7466 genome.wustl.edu 37 4 6303100 6303100 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006005.3 +1 reviewed p.G526 1.000 57 0% 44 11.4% 34 8.8% - - - NULL S100P 6286 genome.wustl.edu 37 4 6695679 6695679 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005980.2 +1 reviewed p.A7V 1.000 54 0% 29 27.6% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_S_100,superfamily_SSF47473 TBC1D14 57533 genome.wustl.edu 37 4 6925709 6925709 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113361.1 +1 validated p.P198L 0.631 71 0% 78 21.8% 7 28.5% benign(0) tolerated(0.23) neutral(0.042) NULL AFAP1 60312 genome.wustl.edu 37 4 7774651 7774651 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134647.1 -1 reviewed p.E717* 1.000 82 0% 74 24.3% 5 40% - - - NULL ABLIM2 84448 genome.wustl.edu 37 4 7986603 7986603 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130083.1 -1 validated p.P566 0.995 146 0% 175 24.6% 0 - - - - superfamily_VHP Villin headpiece domain ABLIM2 84448 genome.wustl.edu 37 4 8037938 8037938 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130083.1 -1 validated p.D329N 1.000 287 0.3% 209 23.4% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SH3TC1 54436 genome.wustl.edu 37 4 8216220 8216220 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018986.3 +1 validated p.L132 1.000 235 0% 258 24% 2 100% - - - NULL SH3TC1 54436 genome.wustl.edu 37 4 8217962 8217962 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000382516 +1 known p.T2M 0.053 127 0% 88 12.5% 4 50% unknown(0) - - NULL CPZ 8532 genome.wustl.edu 37 4 8607763 8607763 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014447.1 +1 reviewed p.A253T 0.999 140 0% 177 13.6% 16 0% benign(0.001) tolerated(0.11) neutral(0.272) HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases LOC100288554 100288554 genome.wustl.edu 37 4 9431280 9431280 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342446.1 +1 model p.C80Y 0.670 753 0% 471 20.4% 0 - - - - HMMPfam_Defensin_beta,superfamily_Defensin-like DRD5 1816 genome.wustl.edu 37 4 9783954 9783954 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000798.4 +1 reviewed p.A101T 0.983 79 0% 111 23.4% 0 - benign(0.036) tolerated(1) neutral(0.002) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like DRD5 1816 genome.wustl.edu 37 4 9784325 9784325 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000798.4 +1 reviewed p.T224 0.989 83 1.2% 79 24.1% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SLC2A9 56606 genome.wustl.edu 37 4 9828145 9828145 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020041.2 -1 reviewed p.P500H 1.000 370 0% 122 13.9% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter SLC2A9 56606 genome.wustl.edu 37 4 10022921 10022921 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020041.2 -1 reviewed p.G45C 0.000 394 0% 308 23.4% 0 - benign(0.233) deleterious(0.01) neutral(0.429) superfamily_MFS general substrate transporter WDR1 9948 genome.wustl.edu 37 4 10090252 10090252 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000443592 -1 known e4-2 0.000 102 0% 70 20% 0 - - - - - WDR1 9948 genome.wustl.edu 37 4 10100688 10100688 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017491.3 -1 reviewed p.A102V 0.999 150 0% 156 17.3% 177 11.8% benign(0.004) tolerated(0.1) neutral(0.286) HMMSmart_SM00320,superfamily_WD40 repeat-like BOD1L 259282 genome.wustl.edu 37 4 13582792 13582792 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148894.2 -1 validated p.P2878S 1.000 338 0% 195 21% 24 58.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AT_hook,HMMSmart_AT_hook BOD1L 259282 genome.wustl.edu 37 4 13605777 13605777 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148894.2 -1 validated p.T916I 1.000 539 0% 375 12.8% 3 0% benign(0.013) tolerated(0.07) neutral(0.320) superfamily_SSF81995 BOD1L 259282 genome.wustl.edu 37 4 13606217 13606217 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148894.2 -1 validated p.E769D 0.346 609 0% 435 19.5% 1 100% benign(0.003) tolerated(0.82) neutral(0.001) superfamily_SSF81995 CPEB2 132864 genome.wustl.edu 37 4 15054200 15054200 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182485.2 +1 reviewed p.I343S 1.000 282 0% 216 26.4% 1 100% possibly_damaging(0.827) deleterious(0) deleterious(0.758) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD CC2D2A 57545 genome.wustl.edu 37 4 15542572 15542572 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080522.2 +1 reviewed p.R706* 1.000 194 0% 108 24.1% 0 - - - - NULL FBXL5 26234 genome.wustl.edu 37 4 15627271 15627271 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012161.2 -1 reviewed p.E485A 0.998 415 0% 265 10.2% 81 11.1% benign(0.117) tolerated(0.7) neutral(0.011) superfamily_RNI-like FBXL5 26234 genome.wustl.edu 37 4 15640237 15640237 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000513163 -1 known p.L80F 1.000 362 0% 201 21.9% 20 40% - - - NULL BST1 683 genome.wustl.edu 37 4 15707183 15707183 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004334.2 +1 validated p.L78 1.000 282 0% 404 20.5% 1 0% - - - HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like CD38 952 genome.wustl.edu 37 4 15850217 15850217 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001775.2 +1 validated p.E299K 0.000 428 0% 314 20.7% 91 25.2% benign(0) tolerated(0.6) neutral(0.004) superfamily_ADP ribosyl cyclase-like FGFBP2 83888 genome.wustl.edu 37 4 15964249 15964249 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031950.3 -1 reviewed p.S168 0.000 144 0% 102 25.5% 1 0% - - - HMMPfam_FGF-BP1 PROM1 8842 genome.wustl.edu 37 4 15987451 15987451 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006017.2 -1 reviewed p.E738K 1.000 280 0% 120 21.7% 63 31.7% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Prominin PROM1 8842 genome.wustl.edu 37 4 16077489 16077489 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006017.2 -1 reviewed p.C14Y 0.000 150 0% 122 20.5% 13 61.5% unknown(0) deleterious(0) - HMMPfam_Prominin TAPT1 202018 genome.wustl.edu 37 4 16188159 16188159 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000513782 -1 known p.R98* 0.732 309 0% 233 18.9% 3 66.6% - - - HMMPfam_DUF747 LAP3 51056 genome.wustl.edu 37 4 17609138 17609138 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015907.2 +1 validated p.R496W 0.159 296 0.7% 116 20.7% 450 38.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases DCAF16 54876 genome.wustl.edu 37 4 17805504 17805504 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017741.3 -1 provisional p.V87 0.990 140 0% 133 30.1% 19 31.5% - - - NULL NCAPG 64151 genome.wustl.edu 37 4 17814564 17814564 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022346.3 +1 validated p.V114L 1.000 298 0% 315 21.9% 4 100% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) superfamily_ARM-type_fold LCORL 254251 genome.wustl.edu 37 4 17885872 17885872 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000382226 -1 known p.P427L 1.000 323 0% 98 13.3% 1 0% benign(0) tolerated(0.26) neutral(0.034) NULL LCORL 254251 genome.wustl.edu 37 4 17886186 17886186 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000382226 -1 known p.S322 1.000 289 0% 81 27.2% 0 - - - - NULL SLIT2 9353 genome.wustl.edu 37 4 20530587 20530587 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004787.1 +1 provisional p.R493Q 1.000 226 0% 147 18.4% 3 100% probably_damaging(0.994) tolerated(0.17) deleterious(0.511) NULL SLIT2 9353 genome.wustl.edu 37 4 20550171 20550171 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004787.1 +1 provisional p.Q802H 1.000 250 0% 71 28.2% 4 25% benign(0.009) tolerated(0.18) neutral(0.057) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like GPR125 166647 genome.wustl.edu 37 4 22414948 22414948 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145290.2 -1 validated p.A697S 1.000 247 0% 69 15.9% 6 33.3% benign(0) tolerated(0.87) neutral(0.001) HMMPfam_GPS,HMMSmart_SM00303 GPR125 166647 genome.wustl.edu 37 4 22444479 22444479 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145290.2 -1 validated p.P238 0.902 244 0% 100 15% 6 50% - - - superfamily_L domain-like DHX15 1665 genome.wustl.edu 37 4 24534618 24534618 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001358.2 -1 reviewed p.A657T 1.000 185 0.5% 138 24.6% 187 36.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CCDC149 91050 genome.wustl.edu 37 4 24878171 24878171 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130726.1 -1 validated p.Y71C 1.000 229 0% 91 23.1% 2 50% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_DUF2353 LGI2 55203 genome.wustl.edu 37 4 25005228 25005228 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018176.3 -1 validated p.E495* 1.000 270 0% 96 31.2% 2 0% - - - NULL LGI2 55203 genome.wustl.edu 37 4 25019660 25019660 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018176.3 -1 validated p.E202D 0.650 348 0% 202 17.8% 1 0% benign(0) tolerated(0.58) neutral(0.005) HMMSmart_SM00082,superfamily_L domain-like SEPSECS 51091 genome.wustl.edu 37 4 25128919 25128919 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016955.3 -1 validated p.L284M 1.000 519 0% 129 23.3% 9 44.4% probably_damaging(0.995) tolerated(0.08) deleterious(0.758) HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases ZCCHC4 29063 genome.wustl.edu 37 4 25335046 25335046 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024936.2 +1 validated p.G191R 1.000 275 0% 102 28.4% 4 100% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) NULL SLC34A2 10568 genome.wustl.edu 37 4 25669570 25669570 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006424.2 +1 reviewed p.I198F 0.997 318 0% 213 19.2% 58 43.1% probably_damaging(0.953) deleterious(0.01) deleterious(0.802) HMMPfam_Na_Pi_cotrans SEL1L3 23231 genome.wustl.edu 37 4 25783928 25783928 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015187.3 -1 validated p.A798V 0.996 467 0% 142 27.5% 38 23.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like TBC1D19 55296 genome.wustl.edu 37 4 26668017 26668017 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018317.2 +1 validated p.Q218 1.000 397 0% 133 12.8% 9 11.1% - - - NULL STIM2 57620 genome.wustl.edu 37 4 27000970 27000970 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020860.3 +1 reviewed e5+1 1.000 176 0% 51 21.6% 0 - - - - - ARAP2 116984 genome.wustl.edu 37 4 36069784 36069784 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015230.2 -1 reviewed p.D1620 0.085 217 0% 77 23.4% 6 16.6% - - - NULL ARAP2 116984 genome.wustl.edu 37 4 36168670 36168670 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015230.2 -1 reviewed e9-1 1.000 184 0% 133 22.6% 0 - - - - - ARAP2 116984 genome.wustl.edu 37 4 36214942 36214942 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015230.2 -1 reviewed e3-1 1.000 158 0% 81 19.8% 0 - - - - - ARAP2 116984 genome.wustl.edu 37 4 36230796 36230796 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015230.2 -1 reviewed p.E105* 0.000 244 0% 146 20.5% 4 25% - - - NULL DTHD1 401124 genome.wustl.edu 37 4 36345317 36345317 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136536.3 +1 validated p.D574 0.979 116 0% 36 19.4% 0 - - - - HMMPfam_Death,superfamily_DEATH domain KIAA1239 57495 genome.wustl.edu 37 4 37432305 37432305 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144990.1 +1 validated p.L157 0.922 332 0% 76 18.4% 0 - - - - NULL TBC1D1 23216 genome.wustl.edu 37 4 38138888 38138888 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015173.2 +1 validated p.R1147W 0.324 26 0% 22 40.9% 114 50.8% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) NULL TLR1 7096 genome.wustl.edu 37 4 38798140 38798140 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003263.3 -1 reviewed p.N771K 0.978 286 0% 146 19.9% 22 9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain TLR1 7096 genome.wustl.edu 37 4 38798541 38798541 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003263.3 -1 reviewed p.H638Y 1.000 246 0% 187 24.1% 7 14.2% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain ENSG00000248412 0 genome.wustl.edu 37 4 38828566 38828566 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508542 +1 novel NULL 0.000 61 0% 73 16.4% 1 0% - - - - TLR6 10333 genome.wustl.edu 37 4 38830588 38830588 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006068.3 -1 validated p.L169 0.285 97 0% 131 25.2% 0 - - - - superfamily_SSF52058 FAM114A1 92689 genome.wustl.edu 37 4 38945103 38945103 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138389.2 +1 validated p.Q539H 1.000 194 0% 89 19.1% 9 11.1% benign(0.013) tolerated(0.08) neutral(0.300) NULL TMEM156 80008 genome.wustl.edu 37 4 38988018 38988018 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024943.1 -1 provisional p.S254F 0.055 342 0% 76 13.2% 1 0% probably_damaging(0.996) tolerated(0.12) deleterious(0.722) NULL TMEM156 80008 genome.wustl.edu 37 4 38990512 38990512 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024943.1 -1 provisional p.R233H 0.652 428 0.2% 188 14.9% 1 0% benign(0) tolerated(0.57) neutral(0.006) NULL RFC1 5981 genome.wustl.edu 37 4 39293387 39293387 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002913.3 -1 reviewed p.V1014L 0.224 404 0% 124 20.2% 48 35.4% benign(0.001) tolerated(0.4) neutral(0.016) HMMPfam_RFC1 RFC1 5981 genome.wustl.edu 37 4 39314460 39314460 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002913.3 -1 reviewed p.R432H 1.000 410 0% 223 26.9% 17 41.1% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT RFC1 5981 genome.wustl.edu 37 4 39328214 39328214 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002913.3 -1 reviewed p.A204V 1.000 495 0% 228 20.2% 5 0% probably_damaging(1) deleterious(0.05) deleterious(0.845) NULL KLB 152831 genome.wustl.edu 37 4 39436051 39436051 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175737.3 +1 validated p.F349L 0.000 287 0% 128 21.9% 0 - benign(0) tolerated(0.85) neutral(0.001) HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat N4BP2 55728 genome.wustl.edu 37 4 40122924 40122924 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018177.3 +1 reviewed p.A1065S 0.998 247 0% 126 24.6% 0 - benign(0.024) deleterious(0.04) neutral(0.350) NULL N4BP2 55728 genome.wustl.edu 37 4 40124821 40124821 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018177.3 +1 reviewed p.E1425* 1.000 529 0% 310 24.2% 1 100% - - - NULL N4BP2 55728 genome.wustl.edu 37 4 40146308 40146308 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000513269 +1 known p.L1307I 1.000 318 0.6% 452 24.6% 4 25% - - - HMMPfam_DUF1771 CHRNA9 55584 genome.wustl.edu 37 4 40356292 40356292 + Missense_Mutation SNP C C T rs55962300 byCluster;byFrequency TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017581.2 +1 reviewed p.R399C 0.026 176 0.6% 50 30% 0 - benign(0.003) tolerated(0.19) neutral(0.050) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore RBM47 54502 genome.wustl.edu 37 4 40440443 40440443 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098634.1 -1 validated p.G156 0.035 21 4.8% 29 17.2% 25 48% - - - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD NSUN7 79730 genome.wustl.edu 37 4 40778234 40778234 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024677.4 +1 validated p.D332N 0.999 215 0% 183 18% 13 53.8% benign(0.157) tolerated(0.56) neutral(0.021) superfamily_S-adenosyl-L-methionine-dependent methyltransferases APBB2 323 genome.wustl.edu 37 4 40818132 40818132 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173075.4 -1 reviewed p.R730C 1.000 655 0% 201 17.4% 9 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LIMCH1 22998 genome.wustl.edu 37 4 41648885 41648885 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014988.2 +1 validated p.S547F 1.000 156 0% 173 10.4% 9 22.2% probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL BEND4 389206 genome.wustl.edu 37 4 42127653 42127653 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207406.3 -1 validated p.L365M 0.996 516 0% 356 23.3% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL ATP8A1 10396 genome.wustl.edu 37 4 42415026 42415026 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006095.2 -1 reviewed p.G1134 0.991 285 0% 137 23.4% 2 0% - - - NULL KCTD8 386617 genome.wustl.edu 37 4 44176835 44176835 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198353.2 -1 validated p.S465Y 0.993 282 0% 371 18.6% 0 - possibly_damaging(0.69) deleterious(0) deleterious(0.692) NULL GUF1 60558 genome.wustl.edu 37 4 44684423 44684423 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021927.2 +1 validated p.N194H 1.000 236 0% 305 19.7% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GTP_EFTU,superfamily_SSF52540 GUF1 60558 genome.wustl.edu 37 4 44688041 44688041 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021927.2 +1 validated e7+1 1.000 550 0% 530 20% 0 - - - - - GNPDA2 132789 genome.wustl.edu 37 4 44713035 44713035 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138335.1 -1 provisional p.D177Y 1.000 298 0% 116 19% 14 35.7% possibly_damaging(0.946) deleterious(0) deleterious(0.835) HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like GABRG1 2565 genome.wustl.edu 37 4 46067526 46067526 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173536.3 -1 reviewed p.L133I 0.997 246 0% 169 20.1% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD GABRA2 2555 genome.wustl.edu 37 4 46388147 46388147 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000807.2 -1 reviewed p.R44I 1.000 249 0% 314 19.7% 0 - - - - HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like COX7B2 170712 genome.wustl.edu 37 4 46736993 46736993 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130902.2 -1 validated p.V73I 0.806 265 0% 155 20.6% 0 - possibly_damaging(0.653) tolerated(0.26) neutral(0.264) HMMPfam_COX7B,superfamily_SSF81423 COX7B2 170712 genome.wustl.edu 37 4 46737011 46737011 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130902.2 -1 validated p.L67I 0.705 293 0% 185 25.4% 0 - benign(0.327) tolerated(0.07) neutral(0.421) HMMPfam_COX7B,superfamily_SSF81423 GABRB1 2560 genome.wustl.edu 37 4 47034482 47034482 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000812.3 +1 reviewed p.M74T 1.000 34 0% 50 34% 0 - benign(0.004) tolerated(0.22) neutral(0.042) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD ATP10D 57205 genome.wustl.edu 37 4 47559685 47559685 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020453.3 +1 validated p.R610K 0.088 78 0% 49 16.3% 1 0% benign(0.024) tolerated(0.97) neutral(0.001) superfamily_HAD-like CORIN 10699 genome.wustl.edu 37 4 47808953 47808953 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006587.2 -1 reviewed p.V59I 0.000 318 0% 137 22.6% 0 - possibly_damaging(0.539) tolerated(1) neutral(0.182) NULL NFXL1 152518 genome.wustl.edu 37 4 47905269 47905269 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152995.4 -1 validated p.Q196 0.997 290 0% 160 11.3% 4 50% - - - PatternScan_ZF_PHD_1,superfamily_RING/U-box CNGA1 1259 genome.wustl.edu 37 4 47939228 47939228 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142564.1 -1 reviewed p.K497I 1.000 234 0% 82 18.3% 0 - probably_damaging(0.963) deleterious(0.01) deleterious(0.811) superfamily_cAMP-binding domain-like NIPAL1 152519 genome.wustl.edu 37 4 48037903 48037903 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207330.1 +1 provisional p.S316F 0.998 424 0% 211 21.3% 0 - possibly_damaging(0.789) deleterious(0) deleterious(0.740) HMMPfam_DUF803 SLAIN2 57606 genome.wustl.edu 37 4 48381793 48381793 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020846.1 +1 validated p.D264Y 1.000 350 0% 307 20.5% 11 72.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FRYL 285527 genome.wustl.edu 37 4 48507569 48507569 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015030.1 -1 validated p.A2820T 1.000 291 0% 106 17.9% 11 45.4% possibly_damaging(0.659) tolerated(0.58) neutral(0.238) superfamily_ARM repeat FRYL 285527 genome.wustl.edu 37 4 48591794 48591794 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015030.1 -1 validated p.Q536H 1.000 379 0% 177 25.4% 0 - benign(0.208) tolerated(0.08) neutral(0.320) superfamily_ARM repeat CWH43 80157 genome.wustl.edu 37 4 49005952 49005952 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025087.2 +1 validated p.A335T 1.000 226 0% 101 23.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL LRRC66 339977 genome.wustl.edu 37 4 52861616 52861616 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024611.1 -1 provisional p.A524 0.000 89 0% 37 27% 0 - - - - NULL SGCB 6443 genome.wustl.edu 37 4 52894953 52894953 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000232.4 -1 reviewed p.E188 1.000 198 0% 265 22.6% 34 32.3% - - - HMMPfam_Sarcoglycan_1 USP46 64854 genome.wustl.edu 37 4 53463866 53463866 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022832.3 -1 validated p.T347 0.121 247 0.4% 127 20.5% 6 83.3% - - - HMMPfam_UCH,superfamily_Cysteine proteinases SCFD2 152579 genome.wustl.edu 37 4 53773665 53773665 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152540.3 -1 validated p.L601F 1.000 341 0% 131 20.6% 39 38.4% probably_damaging(1) tolerated(0.18) deleterious(0.556) superfamily_Sec1/munc18-like (SM) proteins SCFD2 152579 genome.wustl.edu 37 4 54231781 54231781 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152540.3 -1 validated p.A110T 1.000 80 0% 61 21.3% 15 33.3% benign(0.167) tolerated(1) neutral(0.015) NULL LNX1 84708 genome.wustl.edu 37 4 54364894 54364894 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126328.1 -1 reviewed p.L298 0.177 183 0% 72 31.9% 1 100% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like LNX1 84708 genome.wustl.edu 37 4 54374223 54374223 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126328.1 -1 reviewed p.Y184 1.000 55 0% 14 28.6% 1 0% - - - NULL LNX1 84708 genome.wustl.edu 37 4 54439998 54439998 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126328.1 -1 reviewed p.H58Y 1.000 108 0% 64 18.8% 1 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box PDGFRA 5156 genome.wustl.edu 37 4 55127488 55127488 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006206.4 +1 reviewed p.A92 0.006 159 0% 74 23% 1 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin KIT 3815 genome.wustl.edu 37 4 55597513 55597513 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000222.2 +1 reviewed p.Y721H 1.000 277 0% 53 28.3% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like KIT 3815 genome.wustl.edu 37 4 55598117 55598117 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000222.2 +1 reviewed p.F772V 1.000 162 0% 56 23.2% 0 - possibly_damaging(0.952) deleterious(0) deleterious(0.840) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like KDR 3791 genome.wustl.edu 37 4 55970834 55970834 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002253.2 -1 reviewed p.V655M 0.985 159 0% 47 23.4% 5 0% possibly_damaging(0.682) tolerated(0.22) neutral(0.285) HMMSmart_IG,superfamily_SSF48726 NMU 10874 genome.wustl.edu 37 4 56471490 56471490 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006681.2 -1 validated p.Q129H 1.000 236 0% 182 20.3% 7 42.8% possibly_damaging(0.892) tolerated(0.1) deleterious(0.638) NULL EXOC1 55763 genome.wustl.edu 37 4 56768532 56768532 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024924.1 +1 reviewed p.A787D 1.000 278 0% 94 21.3% 36 41.6% possibly_damaging(0.676) tolerated(0.11) deleterious(0.512) HMMPfam_Sec3 CEP135 9662 genome.wustl.edu 37 4 56884001 56884001 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025009.3 +1 validated p.S997L 0.983 122 0% 38 23.7% 7 42.8% possibly_damaging(0.659) tolerated(0.31) neutral(0.260) NULL KIAA1211 57482 genome.wustl.edu 37 4 57182337 57182337 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020722.1 +1 validated p.R890H 0.000 63 0% 54 14.8% 0 - benign(0.06) tolerated(0.07) neutral(0.323) NULL KIAA1211 57482 genome.wustl.edu 37 4 57182706 57182706 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020722.1 +1 validated p.R1013H 0.000 45 0% 58 31% 1 0% probably_damaging(0.988) tolerated(0.12) deleterious(0.698) NULL PPAT 5471 genome.wustl.edu 37 4 57261558 57261558 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002703.3 -1 reviewed p.A505V 1.000 777 0% 462 20.1% 13 53.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_PRTase-like PPAT 5471 genome.wustl.edu 37 4 57269319 57269319 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002703.3 -1 reviewed p.A183V 1.000 353 0% 234 17.5% 17 29.4% possibly_damaging(0.439) deleterious(0) deleterious(0.588) HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) SRP72 6731 genome.wustl.edu 37 4 57340281 57340281 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006947.3 +1 validated p.S139Y 1.000 379 0% 291 26.1% 27 48.1% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_SSF48452 REST 5978 genome.wustl.edu 37 4 57776812 57776812 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005612.3 +1 reviewed p.T3I 1.000 145 0% 196 35.2% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL REST 5978 genome.wustl.edu 37 4 57785958 57785958 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005612.3 +1 reviewed p.R302C 1.000 261 0% 229 21% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF57667 REST 5978 genome.wustl.edu 37 4 57797317 57797317 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005612.3 +1 reviewed p.L765M 0.002 107 0% 49 24.5% 12 41.6% possibly_damaging(0.531) deleterious(0.03) deleterious(0.543) NULL NOA1 84273 genome.wustl.edu 37 4 57834567 57834567 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032313.2 -1 provisional p.R544C 1.000 237 0% 222 21.6% 62 40.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL POLR2B 5431 genome.wustl.edu 37 4 57889620 57889620 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000938.1 +1 reviewed p.L880 1.000 314 0% 85 31.8% 99 45.4% - - - HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase POLR2B 5431 genome.wustl.edu 37 4 57889831 57889831 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000938.1 +1 reviewed p.R924C 1.000 154 0% 44 15.9% 116 43.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase POLR2B 5431 genome.wustl.edu 37 4 57897126 57897126 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000938.1 +1 reviewed p.S1166I 1.000 507 0% 252 17.5% 150 48.6% benign(0.127) deleterious(0.02) neutral(0.394) HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase LPHN3 23284 genome.wustl.edu 37 4 62542646 62542646 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015236.4 +1 reviewed p.V124 1.000 417 0% 165 20% 0 - - - - NULL LPHN3 23284 genome.wustl.edu 37 4 62935835 62935835 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015236.4 +1 reviewed p.L1207M 1.000 46 0% 29 13.8% 1 0% benign(0.012) deleterious(0) neutral(0.445) HMMPfam_Latrophilin EPHA5 2044 genome.wustl.edu 37 4 66242749 66242749 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004439.5 -1 reviewed p.S608Y 1.000 146 0% 50 26% 0 - possibly_damaging(0.449) tolerated(1) neutral(0.147) NULL EPHA5 2044 genome.wustl.edu 37 4 66280050 66280050 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004439.5 -1 reviewed p.G547C 1.000 311 0% 70 22.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CENPC1 1060 genome.wustl.edu 37 4 68338349 68338349 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001812.2 -1 reviewed p.L936I 1.000 232 0% 125 20% 17 17.6% possibly_damaging(0.893) tolerated(0.1) deleterious(0.638) superfamily_RmlC-like cupins,HMMPfam_Cupin_2 STAP1 26228 genome.wustl.edu 37 4 68441106 68441106 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012108.2 +1 reviewed p.V66I 0.902 413 0% 103 21.4% 1 0% benign(0) tolerated(0.37) neutral(0.019) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like UBA6 55236 genome.wustl.edu 37 4 68514815 68514815 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018227.5 -1 validated p.T407A 1.000 219 0% 217 19.8% 5 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Activating enzymes of the ubiquitin-like proteins TMPRSS11D 9407 genome.wustl.edu 37 4 68691452 68691452 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004262.2 -1 reviewed p.Q365* 1.000 298 0% 102 21.6% 0 - - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER TMPRSS11D 9407 genome.wustl.edu 37 4 68719813 68719813 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004262.2 -1 reviewed p.R74 0.000 264 0% 146 17.1% 0 - - - - HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671 TMPRSS11A 339967 genome.wustl.edu 37 4 68812258 68812258 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182606.3 -1 validated p.L15M 0.350 91 0% 34 20.6% 0 - possibly_damaging(0.828) tolerated(0.2) neutral(0.363) NULL TMPRSS11B 132724 genome.wustl.edu 37 4 69100239 69100239 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182502.3 -1 validated p.Q137H 0.009 243 0% 91 17.6% 0 - benign(0.148) deleterious(0.01) neutral(0.419) HMMPfam_SEA,superfamily_SEA domain YTHDC1 91746 genome.wustl.edu 37 4 69202853 69202853 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031732.2 -1 validated p.E259* 1.000 254 0% 139 10.8% 9 0% - - - NULL YTHDC1 91746 genome.wustl.edu 37 4 69203096 69203096 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031732.2 -1 validated p.E178K 1.000 495 0% 198 14.1% 33 6% probably_damaging(0.971) tolerated(0.13) deleterious(0.665) NULL UGT2B17 7367 genome.wustl.edu 37 4 69433501 69433501 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077.3 -1 reviewed p.D234 0.108 85 0% 38 63.2% 3 66.6% - - - HMMPfam_UDPGT,superfamily_SSF53756 UGT2B15 7366 genome.wustl.edu 37 4 69535816 69535816 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076.2 -1 validated p.R174Q 0.901 333 0% 113 16.8% 0 - probably_damaging(0.992) deleterious(0.04) deleterious(0.796) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT2B11 10720 genome.wustl.edu 37 4 69885701 69885701 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381096 -1 known p.K134N 0.001 328 0% 85 18.8% 0 - - - - HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT2B11 10720 genome.wustl.edu 37 4 70070328 70070328 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001073.1 -1 provisional p.A377V 1.000 380 0% 59 11.9% 1 0% benign(0.123) deleterious(0) neutral(0.455) HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_SSF53756 UGT2B28 54490 genome.wustl.edu 37 4 70148379 70148379 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053039.1 +1 provisional p.K290R 1.000 374 0% 79 20.3% 0 - benign(0.162) deleterious(0.05) neutral(0.360) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT2B4 7363 genome.wustl.edu 37 4 70361460 70361460 + Missense_Mutation SNP C C A rs41299974 byCluster;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021139.2 -1 validated p.K40N 0.047 402 0% 85 14.1% 0 - probably_damaging(0.993) deleterious(0.01) deleterious(0.856) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase SULT1E1 6783 genome.wustl.edu 37 4 70715265 70715265 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005420.2 -1 reviewed p.R129Q 1.000 154 0% 96 25% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases CSN2 1447 genome.wustl.edu 37 4 70823382 70823382 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001891.2 -1 validated p.Q95 0.000 340 0% 93 21.5% 0 - - - - NULL AMBN 258 genome.wustl.edu 37 4 71469597 71469597 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016519.4 +1 reviewed p.A253T 0.993 238 0% 54 22.2% 0 - benign(0.02) tolerated(0.23) neutral(0.043) HMMPfam_Amelin,HMMSmart_SM00817 AMBN 258 genome.wustl.edu 37 4 71472423 71472423 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016519.4 +1 reviewed p.D440 0.000 68 0% 27 29.6% 0 - - - - HMMPfam_Amelin,HMMSmart_SM00817 GRSF1 2926 genome.wustl.edu 37 4 71698864 71698864 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002092.3 -1 reviewed p.R214H 0.997 452 0.4% 341 23.8% 153 45% benign(0.019) deleterious(0) neutral(0.446) HMMSmart_SM00360,superfamily_RNA-binding domain RBD DCK 1633 genome.wustl.edu 37 4 71888144 71888144 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000788.2 +1 reviewed p.E90K 1.000 299 0% 307 19.5% 26 19.2% benign(0.001) tolerated(0.75) neutral(0.002) superfamily_SSF52540 NPFFR2 10886 genome.wustl.edu 37 4 72897714 72897714 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004885.2 +1 reviewed p.R32S 0.014 23 0% 20 30% 0 - possibly_damaging(0.444) - - NULL ADAMTS3 9508 genome.wustl.edu 37 4 73184295 73184295 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014243.1 -1 reviewed p.C493 1.000 180 0% 48 33.3% 0 - - - - NULL ADAMTS3 9508 genome.wustl.edu 37 4 73205384 73205384 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014243.1 -1 reviewed p.L230I 0.968 291 0% 67 25.4% 0 - benign(0.3) tolerated(0.1) neutral(0.379) NULL ADAMTS3 9508 genome.wustl.edu 37 4 73433118 73433118 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014243.1 -1 reviewed p.A24T 1.000 251 0% 344 21.2% 0 - benign(0.002) tolerated(0.23) neutral(0.042) HMMPfam_Pep_M12B_propep ANKRD17 26057 genome.wustl.edu 37 4 73984479 73984479 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032217.3 -1 reviewed p.L1372M 1.000 328 0% 149 21.5% 10 30% possibly_damaging(0.885) deleterious(0) deleterious(0.790) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ANKRD17 26057 genome.wustl.edu 37 4 74005789 74005789 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032217.3 -1 reviewed p.I848 0.536 707 0.3% 361 13.6% 6 16.6% - - - superfamily_Ankyrin repeat ANKRD17 26057 genome.wustl.edu 37 4 74010521 74010521 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032217.3 -1 reviewed p.P633L 1.000 264 0.4% 160 25% 5 60% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ALB 213 genome.wustl.edu 37 4 74276041 74276041 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000477.5 +1 reviewed p.R210W 0.021 120 0% 85 22.4% 0 - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) superfamily_Serum albumin-like PF4 5196 genome.wustl.edu 37 4 74847586 74847586 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002619.2 -1 validated p.A29T 0.022 33 0% 39 10.3% 3 0% possibly_damaging(0.484) tolerated(0.31) neutral(0.188) NULL CXCL3 2921 genome.wustl.edu 37 4 74904126 74904126 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002090.2 -1 validated p.A35 0.035 73 0% 98 20.4% 7 14.2% - - - HMMPfam_IL8,superfamily_Chemokine_IL8 CXCL2 2920 genome.wustl.edu 37 4 74964591 74964591 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002089.3 -1 validated p.Q50R 0.001 138 0% 230 19.1% 7 57.1% benign(0.003) tolerated(0.53) neutral(0.007) HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC RCHY1 25898 genome.wustl.edu 37 4 76434089 76434089 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015436.2 -1 reviewed p.I89M 0.993 281 0% 267 14.6% 8 37.5% benign(0.064) tolerated(0.08) neutral(0.304) HMMPfam_zf-CHY USO1 8615 genome.wustl.edu 37 4 76733490 76733490 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441296 +1 known p.Y596* 0.003 182 0% 76 27.6% 55 38.1% possibly_damaging(0.502) tolerated(0.22) neutral(0.210) HMMPfam_Uso1_p115_C,superfamily_ARM repeat PPEF2 5470 genome.wustl.edu 37 4 76794279 76794279 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006239.2 -1 reviewed e11+1 1.000 464 0% 288 25% 0 - - - - - NUP54 53371 genome.wustl.edu 37 4 77053839 77053839 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017426.2 -1 reviewed p.S248 1.000 402 0% 239 27.6% 20 60% - - - NULL SCARB2 950 genome.wustl.edu 37 4 77100813 77100813 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005506.2 -1 reviewed p.E157K 0.983 168 0.6% 64 25% 38 26.3% benign(0.361) tolerated(0.38) neutral(0.132) HMMPfam_CD36 SCARB2 950 genome.wustl.edu 37 4 77134596 77134596 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005506.2 -1 reviewed p.D34G 0.995 93 0% 134 19.4% 27 44.4% possibly_damaging(0.663) tolerated(0.28) neutral(0.266) HMMPfam_CD36 CCDC158 339965 genome.wustl.edu 37 4 77272192 77272192 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042784.1 -1 validated p.S874F 0.693 324 0% 101 19.8% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) NULL CCDC158 339965 genome.wustl.edu 37 4 77290673 77290673 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042784.1 -1 validated p.R418Q 1.000 168 0% 110 22.7% 0 - probably_damaging(0.999) tolerated(0.26) deleterious(0.524) NULL SHROOM3 57619 genome.wustl.edu 37 4 77661744 77661744 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020859.3 +1 validated p.G806 0.004 62 0% 115 27% 15 33.3% - - - NULL SEPT11 55752 genome.wustl.edu 37 4 77940334 77940334 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018243.2 +1 validated p.A235V 1.000 268 0% 86 27.9% 27 22.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Septin,superfamily_SSF52540 CCNI 10983 genome.wustl.edu 37 4 77969661 77969661 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006835.2 -1 reviewed p.S282F 1.000 318 0% 118 23.7% 278 34.8% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL CCNI 10983 genome.wustl.edu 37 4 77976515 77976515 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006835.2 -1 reviewed p.S160P 1.000 273 0% 121 25.6% 241 27.8% benign(0.179) deleterious(0.02) neutral(0.400) NULL CNOT6L 246175 genome.wustl.edu 37 4 78678051 78678051 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144571.2 -1 validated p.R152Q 1.000 508 0% 268 21.6% 10 50% benign(0.046) tolerated(0.63) neutral(0.006) NULL MRPL1 65008 genome.wustl.edu 37 4 78804528 78804528 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502384 +1 known p.P46S 0.997 265 0% 95 12.6% 48 31.2% - - - superfamily_Ribosomal protein L1 FRAS1 80144 genome.wustl.edu 37 4 79351537 79351537 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000510944 +1 known p.A95T 0.780 104 0% 54 31.5% 0 - - - - NULL FRAS1 80144 genome.wustl.edu 37 4 79394642 79394642 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025074.6 +1 reviewed p.R2524C 1.000 679 0% 246 28.5% 1 100% possibly_damaging(0.598) deleterious(0.03) deleterious(0.572) NULL FRAS1 80144 genome.wustl.edu 37 4 79460550 79460550 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025074.6 +1 reviewed p.P3800T 1.000 341 0% 197 19.3% 6 83.3% benign(0.196) deleterious(0.01) neutral(0.424) NULL ANXA3 306 genome.wustl.edu 37 4 79522686 79522686 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005139.2 +1 reviewed p.P251 0.969 441 0% 124 22.6% 128 57% - - - superfamily_Annexin BMP2K 55589 genome.wustl.edu 37 4 79832311 79832311 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198892.1 +1 reviewed p.Q870H 0.003 209 0% 71 22.5% 3 33.3% unknown(0) deleterious(0) - NULL PAQR3 152559 genome.wustl.edu 37 4 79856325 79856325 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040202.1 -1 validated p.A100S 1.000 317 0% 323 24.1% 6 66.6% possibly_damaging(0.555) tolerated(0.21) neutral(0.233) HMMPfam_HlyIII GK2 2712 genome.wustl.edu 37 4 80328855 80328855 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033214.2 -1 validated p.A167D 0.997 395 0.3% 335 15.8% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_FGGY_N,superfamily_SSF53067 GK2 2712 genome.wustl.edu 37 4 80329176 80329176 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033214.2 -1 validated p.I60S 1.000 479 0.4% 516 20.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FGGY_N,superfamily_SSF53067 FGF5 2250 genome.wustl.edu 37 4 81196135 81196135 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004464.3 +1 reviewed p.A143V 1.000 334 0% 308 23.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine HNRNPD 3184 genome.wustl.edu 37 4 83278594 83278594 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031370.2 -1 reviewed p.E209K 1.000 445 0% 257 20.2% 322 39.7% possibly_damaging(0.546) deleterious(0.05) deleterious(0.531) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD ENOPH1 58478 genome.wustl.edu 37 4 83369072 83369072 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021204.3 +1 validated e2-1 1.000 356 0% 328 22.6% 0 - - - - - TMEM150C 441027 genome.wustl.edu 37 4 83425743 83425743 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080506.1 -1 provisional p.G23E 0.998 335 0% 147 11.6% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Frag1 SEC31A 22872 genome.wustl.edu 37 4 83795793 83795793 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077207.1 -1 reviewed p.I204L 1.000 271 0% 128 13.3% 21 19% benign(0.259) deleterious(0.01) neutral(0.433) HMMSmart_SM00320,superfamily_WD40 repeat-like THAP9 79725 genome.wustl.edu 37 4 83826058 83826058 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024672.4 +1 validated p.A84T 0.989 149 0% 193 20.7% 2 50% probably_damaging(0.977) deleterious(0.02) deleterious(0.802) HMMPfam_THAP,HMMSmart_DM3 THAP9 79725 genome.wustl.edu 37 4 83839996 83839996 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024672.4 +1 validated p.Q877H 0.000 139 0% 58 13.8% 1 0% possibly_damaging(0.861) deleterious(0) deleterious(0.778) NULL COPS4 51138 genome.wustl.edu 37 4 83987686 83987686 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016129.2 +1 reviewed p.L328V 0.901 163 0% 84 10.7% 72 25% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) "HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain" PLAC8 51316 genome.wustl.edu 37 4 84015850 84015850 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130715.1 -1 validated p.R113H 0.000 381 0.3% 183 23% 12 16.6% benign(0.007) tolerated(0.24) neutral(0.037) NULL COQ2 27235 genome.wustl.edu 37 4 84185391 84185391 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015697.7 -1 reviewed p.D372 0.000 296 0% 170 17.6% 24 20.8% - - - NULL HELQ 113510 genome.wustl.edu 37 4 84348820 84348820 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133636.2 -1 validated p.L858I 0.995 331 0% 117 13.7% 0 - probably_damaging(0.969) tolerated(0.08) deleterious(0.712) NULL HELQ 113510 genome.wustl.edu 37 4 84376766 84376766 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133636.2 -1 validated p.G27 0.000 78 0% 69 18.8% 7 42.8% - - - NULL FAM175A 84142 genome.wustl.edu 37 4 84390212 84390212 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139076.2 -1 validated p.G190D 0.987 263 0% 145 22.1% 3 33.3% probably_damaging(0.982) tolerated(0.29) neutral(0.456) NULL NKX6-1 4825 genome.wustl.edu 37 4 85416924 85416924 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006168.2 -1 validated p.I248 0.997 329 0% 410 21% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like WDFY3 23001 genome.wustl.edu 37 4 85609357 85609357 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014991.4 -1 reviewed p.I3142S 0.988 280 0% 153 11.8% 9 22.2% possibly_damaging(0.691) deleterious(0) deleterious(0.692) HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 WDFY3 23001 genome.wustl.edu 37 4 85617254 85617254 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014991.4 -1 reviewed p.A2924T 1.000 186 0% 107 16.8% 11 27.2% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like WDFY3 23001 genome.wustl.edu 37 4 85661544 85661544 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014991.4 -1 reviewed p.S2087L 1.000 447 0% 327 28.7% 2 100% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL WDFY3 23001 genome.wustl.edu 37 4 85701277 85701277 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014991.4 -1 reviewed p.R1450I 1.000 191 0% 104 24% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL WDFY3 23001 genome.wustl.edu 37 4 85724513 85724513 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014991.4 -1 reviewed p.I846T 1.000 231 0% 148 29.7% 0 - benign(0.031) deleterious(0.01) neutral(0.407) superfamily_ARM repeat ARHGAP24 83478 genome.wustl.edu 37 4 86844806 86844806 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025616.2 +1 validated p.D92N 1.000 165 0% 75 21.3% 1 0% benign(0.364) tolerated(0.52) neutral(0.124) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ARHGAP24 83478 genome.wustl.edu 37 4 86916073 86916073 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025616.2 +1 validated p.K422N 1.000 159 0.6% 68 19.1% 1 100% possibly_damaging(0.872) tolerated(0.27) neutral(0.373) NULL PTPN13 5783 genome.wustl.edu 37 4 87610236 87610236 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080685.2 +1 reviewed p.R147W 0.994 446 0% 230 22.2% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_KIND,superfamily_SSF101690 PTPN13 5783 genome.wustl.edu 37 4 87622510 87622510 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080685.2 +1 reviewed p.D251N 0.999 175 0% 138 15.2% 0 - benign(0.177) deleterious(0) neutral(0.461) NULL PTPN13 5783 genome.wustl.edu 37 4 87691042 87691042 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080685.2 +1 reviewed p.F1542C 1.000 272 0% 124 25.8% 4 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ PTPN13 5783 genome.wustl.edu 37 4 87731132 87731132 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080685.2 +1 reviewed p.L2437I 1.000 243 0% 177 20.3% 31 45.1% probably_damaging(0.96) tolerated(0.08) deleterious(0.703) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 AFF1 4299 genome.wustl.edu 37 4 88055752 88055752 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005935.2 +1 validated p.Q1139 0.995 270 0% 90 16.7% 12 58.3% - - - HMMPfam_AF-4 KLHL8 57563 genome.wustl.edu 37 4 88091267 88091267 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020803.3 -1 validated p.G501* 1.000 231 0% 145 22.1% 2 50% - - - HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain KLHL8 57563 genome.wustl.edu 37 4 88097982 88097982 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020803.3 -1 validated p.H379Y 1.000 400 0% 243 12.3% 3 0% probably_damaging(0.998) tolerated(0.47) deleterious(0.485) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain DSPP 1834 genome.wustl.edu 37 4 88533912 88533912 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014208.3 +1 reviewed p.S192G 0.001 374 0% 143 10.5% 0 - possibly_damaging(0.888) - - NULL DSPP 1834 genome.wustl.edu 37 4 88535069 88535069 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014208.3 +1 reviewed p.E419* 0.146 532 0% 185 19.5% 0 - - - - NULL DSPP 1834 genome.wustl.edu 37 4 88536718 88536718 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000432448 +1 known p.A480V 0.001 553 0% 226 25.7% 0 - - - - HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339 DMP1 1758 genome.wustl.edu 37 4 88580374 88580374 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004407.3 +1 reviewed p.G35 0.008 311 0% 298 22.5% 0 - - - - HMMPfam_DMP1 DMP1 1758 genome.wustl.edu 37 4 88583147 88583147 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004407.3 +1 reviewed p.E73* 0.654 251 0% 124 13.7% 0 - - - - HMMPfam_DMP1 MEPE 56955 genome.wustl.edu 37 4 88767342 88767342 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020203.3 +1 validated p.R441H 0.000 233 0% 107 28% 0 - benign(0.021) tolerated(0.88) neutral(0.001) NULL SPP1 6696 genome.wustl.edu 37 4 88902666 88902666 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040058.1 +1 validated p.D86N 0.853 296 0% 155 27.1% 64 9.3% possibly_damaging(0.921) tolerated(0.65) neutral(0.374) HMMPfam_Osteopontin,HMMSmart_SM00017 ABCG2 9429 genome.wustl.edu 37 4 89036199 89036199 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004827.2 -1 reviewed p.E285K 1.000 384 0% 120 29.2% 12 0% probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL ABCG2 9429 genome.wustl.edu 37 4 89061130 89061130 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004827.2 -1 reviewed p.V6 0.000 169 0% 88 26.1% 4 0% - - - NULL PPM1K 152926 genome.wustl.edu 37 4 89198353 89198353 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152542.3 -1 validated p.T161 0.991 261 0% 209 20.6% 3 33.3% - - - HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C HERC6 55008 genome.wustl.edu 37 4 89306693 89306693 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502870 +1 known p.P99H 1.000 150 0% 139 23% 4 50% - - - HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II HERC6 55008 genome.wustl.edu 37 4 89338711 89338711 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017912.3 +1 validated p.M565V 0.002 244 0% 57 17.5% 7 28.5% benign(0) tolerated(0.92) - NULL HERC5 51191 genome.wustl.edu 37 4 89383492 89383492 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016323.2 +1 reviewed p.L225M 1.000 145 0% 151 27.2% 12 16.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_RCC1,superfamily_RCC1/BLIP-II HERC5 51191 genome.wustl.edu 37 4 89391791 89391791 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016323.2 +1 reviewed p.P422H 0.999 255 0% 235 12.8% 5 0% possibly_damaging(0.486) tolerated(0.14) neutral(0.411) NULL HERC5 51191 genome.wustl.edu 37 4 89407361 89407361 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016323.2 +1 reviewed p.Y611 0.000 513 0% 249 23.7% 14 14.2% - - - NULL HERC3 8916 genome.wustl.edu 37 4 89577183 89577183 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014606.1 +1 provisional p.A356S 1.000 281 0.4% 67 22.4% 4 25% benign(0.001) tolerated(0.98) - superfamily_RCC1/BLIP-II FAM13A 10144 genome.wustl.edu 37 4 89668099 89668099 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014883.2 -1 validated p.S817I 1.000 421 0% 191 24.1% 3 33.3% possibly_damaging(0.948) deleterious(0) deleterious(0.836) NULL TIGD2 166815 genome.wustl.edu 37 4 90034933 90034933 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145715.2 +1 reviewed p.F270V 0.976 201 0% 270 14.4% 9 33.3% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_DDE GPRIN3 285513 genome.wustl.edu 37 4 90169359 90169359 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198281.2 -1 validated p.P635S 0.999 89 0% 65 16.9% 1 0% benign(0.018) tolerated(0.48) neutral(0.011) NULL FAM190A 401145 genome.wustl.edu 37 4 91230231 91230231 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145065.1 +1 validated p.D266Y 1.000 268 0% 82 31.7% 5 80% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TMSB4XP8 7117 genome.wustl.edu 37 4 91760087 91760087 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183049.2 -1 validated p.T34 1.000 69 0% 50 22% 4494 0.1% - - - HMMPfam_Thymosin,HMMSmart_THY BMPR1B 658 genome.wustl.edu 37 4 96052423 96052423 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001203.2 +1 reviewed p.T279I 1.000 196 0% 78 19.2% 11 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase BMPR1B 658 genome.wustl.edu 37 4 96052638 96052638 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001203.2 +1 reviewed p.L351M 1.000 183 0% 75 13.3% 4 25% possibly_damaging(0.949) tolerated(0.05) deleterious(0.738) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase UNC5C 8633 genome.wustl.edu 37 4 96104160 96104160 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003728.2 -1 reviewed p.T780I 1.000 422 0% 265 20.8% 0 - possibly_damaging(0.733) deleterious(0.01) deleterious(0.673) NULL PDHA2 5161 genome.wustl.edu 37 4 96761938 96761938 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005390.4 +1 validated p.K213Q 1.000 170 0% 179 21.8% 0 - possibly_damaging(0.472) tolerated(0.08) neutral(0.456) HMMPfam_E1_dh,superfamily_SSF52518 EIF4E 1977 genome.wustl.edu 37 4 99802209 99802209 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130679.1 -1 validated p.G239 1.000 447 0% 255 11.8% 61 55.7% - - - HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e ADH6 130 genome.wustl.edu 37 4 100137333 100137333 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102470.1 -1 reviewed p.K35N 0.805 122 0% 77 13% 0 - possibly_damaging(0.452) tolerated(0.19) neutral(0.198) superfamily_GroES_like,HMMPfam_ADH_N ADH1C 126 genome.wustl.edu 37 4 100266019 100266019 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000669.3 -1 reviewed p.K189N 1.000 247 0% 132 23.5% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_NAD(P)-binding Rossmann-fold domains C4orf17 84103 genome.wustl.edu 37 4 100460497 100460497 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032149.2 +1 validated p.T269I 0.000 335 0% 100 16% 0 - probably_damaging(0.99) deleterious(0.03) deleterious(0.806) NULL C4orf17 84103 genome.wustl.edu 37 4 100463192 100463192 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032149.2 +1 validated p.V336M 0.000 209 0% 59 22% 0 - benign(0) tolerated(0.23) neutral(0.042) NULL EMCN 51705 genome.wustl.edu 37 4 101337095 101337095 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016242.3 -1 validated p.S237 1.000 129 0% 32 18.8% 6 0% - - - HMMPfam_Endomucin EMCN 51705 genome.wustl.edu 37 4 101337108 101337108 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016242.3 -1 validated p.S233Y 0.993 118 0% 29 13.8% 3 0% probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_Endomucin EMCN 51705 genome.wustl.edu 37 4 101342495 101342495 + Missense_Mutation SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016242.3 -1 validated p.T203R 1.000 345 0% 88 20.5% 4 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Endomucin SLC39A8 64116 genome.wustl.edu 37 4 103189135 103189135 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135146.1 -1 reviewed p.H314 1.000 297 0% 120 20% 37 29.7% - - - HMMPfam_Zip NFKB1 4790 genome.wustl.edu 37 4 103500070 103500070 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003998.3 +1 reviewed p.L202M 0.014 183 0.5% 73 12.3% 23 17.3% benign(0) tolerated(0.1) neutral(0.286) superfamily_ANK,superfamily_P53_like_DNA_bnd,HMMPfam_RHD NFKB1 4790 genome.wustl.edu 37 4 103533675 103533675 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003998.3 +1 reviewed p.T835N 0.350 221 0% 77 15.6% 39 28.2% possibly_damaging(0.461) tolerated(0.07) deleterious(0.470) HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like MANBA 4126 genome.wustl.edu 37 4 103595175 103595175 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005908.3 -1 reviewed p.G338D 1.000 174 0% 167 24% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_hydro_2_C,superfamily_Glyco_hydro_cat SLC9B1 150159 genome.wustl.edu 37 4 103866476 103866476 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139173.2 -1 reviewed p.A176V 0.990 364 0% 100 19% 0 - possibly_damaging(0.705) tolerated(0.09) deleterious(0.550) HMMPfam_Na_H_Exchanger SLC9B2 133308 genome.wustl.edu 37 4 103987551 103987551 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178833.4 -1 validated p.H68 0.000 740 0% 567 15% 1 0% - - - NULL CENPE 1062 genome.wustl.edu 37 4 104030046 104030046 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001813.2 -1 validated p.S2642Y 0.071 586 0% 236 21.2% 17 17.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CENPE 1062 genome.wustl.edu 37 4 104061411 104061411 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001813.2 -1 validated e37+2 0.700 294 0% 334 17.1% 0 - - - - - TACR3 6870 genome.wustl.edu 37 4 104577437 104577437 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001059.1 -1 reviewed p.T268A 1.000 211 0% 51 31.4% 0 - benign(0.01) tolerated(0.22) neutral(0.043) HMMPfam_7tm_1,superfamily_SSF81321 TACR3 6870 genome.wustl.edu 37 4 104640489 104640489 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001059.1 -1 reviewed p.R115H 1.000 163 0% 152 24.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 TET2 54790 genome.wustl.edu 37 4 106156672 106156672 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127208.1 +1 validated p.L525I 0.000 144 0% 76 23.7% 1 100% benign(0.012) tolerated(0.3) neutral(0.029) NULL TET2 54790 genome.wustl.edu 37 4 106158144 106158144 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127208.1 +1 validated p.S1015 0.152 170 0% 60 18.3% 3 33.3% - - - NULL GSTCD 79807 genome.wustl.edu 37 4 106759038 106759038 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031720.2 +1 validated p.S563A 1.000 240 0% 205 23.4% 7 42.8% possibly_damaging(0.935) tolerated(0.35) neutral(0.401) NULL NPNT 255743 genome.wustl.edu 37 4 106863529 106863529 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033047.2 +1 validated p.L277V 0.016 220 0% 45 28.9% 10 40% benign(0.079) tolerated(0.3) neutral(0.034) NULL TBCK 93627 genome.wustl.edu 37 4 107169419 107169419 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033115.3 -1 validated p.T192 0.970 180 0% 126 12.7% 5 0% - - - superfamily_Kinase_like,HMMPfam_Pkinase TBCK 93627 genome.wustl.edu 37 4 107183304 107183304 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000273980 -1 known p.G111D 0.999 380 0% 278 25.2% 6 16.6% benign(0.001) tolerated(0.71) neutral(0.002) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase AIMP1 9255 genome.wustl.edu 37 4 107268735 107268735 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142416.1 +1 reviewed p.Q299H 1.000 295 0% 60 21.7% 85 50.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Nucleic acid-binding proteins PAPSS1 9061 genome.wustl.edu 37 4 108581209 108581209 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005443.4 -1 validated p.A230V 0.995 445 0% 106 12.3% 23 0% benign(0) tolerated(0.21) neutral(0.044) superfamily_PUA domain-like PAPSS1 9061 genome.wustl.edu 37 4 108614925 108614925 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005443.4 -1 validated e3+2 0.998 152 0% 22 27.3% 0 - - - - - SGMS2 166929 genome.wustl.edu 37 4 108824398 108824398 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136257.1 +1 reviewed p.D195Y 1.000 337 0.3% 78 25.6% 11 36.3% possibly_damaging(0.867) deleterious(0.02) deleterious(0.720) NULL OSTC 58505 genome.wustl.edu 37 4 109576775 109576775 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021227.2 +1 validated p.E65 1.000 391 0% 228 17.5% 202 22.7% - - - HMMPfam_DUF2055 AGXT2L1 64850 genome.wustl.edu 37 4 109670610 109670610 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031279.3 -1 validated p.H237 0.000 342 0% 210 22.9% 0 - - - - HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases SEC24B 10427 genome.wustl.edu 37 4 110394200 110394200 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006323.2 +1 reviewed p.Q306 0.977 346 0% 302 17.2% 13 61.5% - - - NULL SEC24B 10427 genome.wustl.edu 37 4 110433113 110433113 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006323.2 +1 reviewed p.Q593* 1.000 368 0% 426 12% 13 7.6% - - - superfamily_Zn-finger domain of Sec23/24,superfamily_beta-sandwich domain of Sec23/24 CCDC109B 55013 genome.wustl.edu 37 4 110585478 110585478 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017918.4 +1 validated p.D127N 0.995 612 0% 304 16.1% 32 46.8% benign(0.194) deleterious(0.02) neutral(0.401) HMMPfam_DUF607 CASP6 839 genome.wustl.edu 37 4 110610710 110610710 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001226.3 -1 reviewed p.R220W 1.000 183 0% 188 15.4% 84 47.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like GAR1 54433 genome.wustl.edu 37 4 110740292 110740292 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000503671 +1 known p.A169S 0.000 183 0% 178 27% 0 - - - - NULL LRIT3 345193 genome.wustl.edu 37 4 110791038 110791038 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198506.2 +1 validated p.S333Y 0.004 613 0% 149 22.8% 0 - possibly_damaging(0.604) tolerated(1) neutral(0.209) NULL EGF 1950 genome.wustl.edu 37 4 110834591 110834591 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001963.4 +1 reviewed p.A34T 0.000 244 0% 80 23.7% 0 - benign(0.001) tolerated(0.56) neutral(0.006) NULL EGF 1950 genome.wustl.edu 37 4 110865006 110865006 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001963.4 +1 reviewed p.F173C 1.000 624 0% 339 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_LY,superfamily_SSF63825 EGF 1950 genome.wustl.edu 37 4 110897275 110897275 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001963.4 +1 reviewed p.G646E 1.000 356 0% 105 19% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 ENPEP 2028 genome.wustl.edu 37 4 111409837 111409837 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001977.3 +1 validated p.A262V 1.000 362 0% 196 18.4% 2 0% benign(0.03) tolerated(0.18) neutral(0.058) HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain ENPEP 2028 genome.wustl.edu 37 4 111470692 111470692 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001977.3 +1 validated p.R745H 1.000 399 0% 131 11.5% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ENPEP 2028 genome.wustl.edu 37 4 111482586 111482586 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001977.3 +1 validated p.P916T 1.000 400 0.3% 153 30.1% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PITX2 5308 genome.wustl.edu 37 4 111539513 111539513 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000325.5 -1 reviewed p.S248I 1.000 138 0% 193 23.8% 24 37.5% benign(0.026) deleterious(0.03) neutral(0.365) NULL PITX2 5308 genome.wustl.edu 37 4 111553537 111553537 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153426.1 -1 reviewed p.S49N 0.983 116 0% 104 25% 2 0% benign(0.003) deleterious(0.01) neutral(0.406) NULL TIFA 92610 genome.wustl.edu 37 4 113199269 113199269 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052864.2 -1 validated p.E102* 0.984 134 0% 89 28.1% 15 13.3% - - - HMMPfam_FHA,HMMSmart_FHA ALPK1 80216 genome.wustl.edu 37 4 113356353 113356353 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102406.1 +1 validated p.Q1028H 1.000 207 0% 70 10% 15 6.6% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like) C4orf21 55345 genome.wustl.edu 37 4 113461229 113461229 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000505019 -1 known p.V1988M 1.000 237 0% 137 30.7% 5 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_P-loop containing nucleoside triphosphate hydrolases LARP7 51574 genome.wustl.edu 37 4 113568208 113568208 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000503316 +1 known NULL 1.000 244 0% 223 16.6% 46 50% - - - - ARSJ 79642 genome.wustl.edu 37 4 114899961 114899961 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024590.3 -1 validated p.P10 0.950 40 0% 59 13.6% 6 50% - - - NULL UGT8 7368 genome.wustl.edu 37 4 115544571 115544571 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128174.1 +1 validated p.E179* 1.000 306 0% 176 17.6% 3 0% - - - HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT8 7368 genome.wustl.edu 37 4 115597395 115597395 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128174.1 +1 validated p.G526D 1.000 211 0% 163 22.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NDST4 64579 genome.wustl.edu 37 4 115856418 115856418 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022569.1 -1 provisional p.E494K 1.000 647 0% 449 20.3% 0 - benign(0.001) tolerated(1) - NULL NDST3 9348 genome.wustl.edu 37 4 119026230 119026230 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004784.2 +1 reviewed p.L347M 1.000 256 0% 165 15.2% 0 - probably_damaging(0.989) tolerated(0.1) deleterious(0.726) NULL NDST3 9348 genome.wustl.edu 37 4 119036027 119036027 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004784.2 +1 reviewed p.P379H 1.000 469 0% 168 23.8% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL PRSS12 8492 genome.wustl.edu 37 4 119239704 119239704 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003619.2 -1 reviewed p.A327T 1.000 221 0% 90 21.1% 2 0% possibly_damaging(0.935) tolerated(0.35) neutral(0.401) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like SEC24D 9871 genome.wustl.edu 37 4 119652450 119652450 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419654 -1 known p.A125 0.006 158 0% 50 28% 0 - - - - NULL SEC24D 9871 genome.wustl.edu 37 4 119652613 119652613 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014822.2 -1 reviewed p.S909F 1.000 244 0% 88 21.6% 38 26.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24 SEC24D 9871 genome.wustl.edu 37 4 119678945 119678945 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014822.2 -1 reviewed p.S451N 1.000 602 0% 162 21.6% 8 12.5% benign(0) tolerated(1) - HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24 SYNPO2 171024 genome.wustl.edu 37 4 119947837 119947837 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133477.2 +1 validated p.E105K 0.004 176 0% 71 22.5% 1 0% benign(0.026) deleterious(0.05) neutral(0.346) NULL SYNPO2 171024 genome.wustl.edu 37 4 119951821 119951821 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133477.2 +1 validated p.A631T 0.002 184 0.5% 83 18.1% 4 0% benign(0) tolerated(0.14) neutral(0.249) NULL SYNPO2 171024 genome.wustl.edu 37 4 119951913 119951913 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000504178 +1 known p.R613* 0.002 236 0.4% 79 13.9% 1 0% - - - NULL SYNPO2 171024 genome.wustl.edu 37 4 119952570 119952570 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000504178 +1 known p.V832I 1.000 184 0% 70 21.4% 4 0% - - - NULL SYNPO2 171024 genome.wustl.edu 37 4 119978645 119978645 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133477.2 +1 validated p.Y1114* 0.153 228 0% 188 21.8% 2 0% - - - NULL MYOZ2 51778 genome.wustl.edu 37 4 120072131 120072131 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016599.3 +1 validated p.R61C 1.000 338 0% 84 15.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Calsarcin MYOZ2 51778 genome.wustl.edu 37 4 120107206 120107206 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016599.3 +1 validated p.D216N 1.000 308 0% 231 23.8% 0 - probably_damaging(0.998) tolerated(0.39) deleterious(0.490) HMMPfam_Calsarcin USP53 54532 genome.wustl.edu 37 4 120214088 120214088 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019050.2 +1 validated p.H982Y 0.002 152 0.7% 158 21.5% 9 22.2% benign(0) tolerated(0.1) neutral(0.286) NULL PDE5A 8654 genome.wustl.edu 37 4 120425696 120425696 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083.3 -1 reviewed p.Q776* 1.000 324 0% 70 14.3% 0 - - - - HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like PRDM5 11107 genome.wustl.edu 37 4 121616348 121616348 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018699.2 -1 reviewed p.C604Y 1.000 379 0% 89 27% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PRDM5 11107 genome.wustl.edu 37 4 121702334 121702334 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018699.2 -1 reviewed p.A469 0.011 315 0% 70 15.7% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PRDM5 11107 genome.wustl.edu 37 4 121706204 121706204 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018699.2 -1 reviewed p.A411S 1.000 276 0% 65 18.5% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers NDNF 79625 genome.wustl.edu 37 4 121958221 121958221 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024574.3 -1 validated p.S302F 1.000 391 0% 108 21.3% 1 0% possibly_damaging(0.783) deleterious(0.02) deleterious(0.676) HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_DUF2369 TNIP3 79931 genome.wustl.edu 37 4 122059836 122059836 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128843.1 -1 validated p.D297Y 1.000 430 0.2% 134 17.9% 2 0% possibly_damaging(0.882) tolerated(0.06) deleterious(0.667) NULL TNIP3 79931 genome.wustl.edu 37 4 122063004 122063004 + Missense_Mutation SNP G G T rs35858395 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000322647 -1 known p.A283D 0.000 251 0% 70 34.3% 1 0% - - - NULL QRFPR 84109 genome.wustl.edu 37 4 122254182 122254182 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198179.2 -1 validated p.E197 0.972 187 0% 91 25.3% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 BBS7 55212 genome.wustl.edu 37 4 122780277 122780277 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176824.1 -1 reviewed p.C133Y 1.000 204 0% 136 13.2% 6 16.6% benign(0.326) tolerated(0.43) neutral(0.115) NULL BBS7 55212 genome.wustl.edu 37 4 122784427 122784427 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176824.1 -1 reviewed p.I37T 0.996 456 0% 392 10.7% 16 0% benign(0.007) deleterious(0.01) neutral(0.406) NULL TRPC3 7222 genome.wustl.edu 37 4 122828636 122828636 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130698.1 -1 validated p.A627T 1.000 126 0% 46 32.6% 0 - benign(0.217) tolerated(0.16) neutral(0.081) HMMPfam_Ion_trans TRPC3 7222 genome.wustl.edu 37 4 122831398 122831398 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130698.1 -1 validated p.T568M 0.226 365 0.3% 117 20.5% 0 - benign(0.008) deleterious(0.02) neutral(0.383) HMMPfam_Ion_trans TRPC3 7222 genome.wustl.edu 37 4 122833042 122833042 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130698.1 -1 validated p.V516 0.996 158 0.6% 92 18.5% 0 - - - - HMMPfam_Ion_trans KIAA1109 84162 genome.wustl.edu 37 4 123236821 123236821 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015312.3 +1 reviewed p.T3506I 1.000 199 0% 45 11.1% 1 0% possibly_damaging(0.607) deleterious(0.03) deleterious(0.575) NULL ADAD1 132612 genome.wustl.edu 37 4 123301256 123301256 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139243.3 +1 validated p.S11L 0.998 122 0% 175 24.6% 0 - benign(0.167) deleterious(0) neutral(0.460) NULL BBS12 166379 genome.wustl.edu 37 4 123664339 123664339 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152618.2 +1 reviewed p.R431Q 0.003 124 0% 105 21% 5 60% benign(0) tolerated(0.23) neutral(0.042) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like SPATA5 166378 genome.wustl.edu 37 4 123855498 123855498 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145207.2 +1 validated p.T251N 1.000 124 0% 105 21% 3 66.6% possibly_damaging(0.901) deleterious(0.01) deleterious(0.762) NULL SPATA5 166378 genome.wustl.edu 37 4 124177291 124177291 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145207.2 +1 validated p.L821 0.987 353 0% 96 16.7% 3 33.3% - - - HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases SPRY1 10252 genome.wustl.edu 37 4 124322691 124322691 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005841.1 +1 validated e1-1 1.000 187 0% 217 20.3% 1 0% - - - - ANKRD50 57182 genome.wustl.edu 37 4 125591197 125591197 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020337.2 -1 validated p.R1079C 1.000 118 0% 67 22.4% 3 33.3% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK ANKRD50 57182 genome.wustl.edu 37 4 125631293 125631293 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020337.2 -1 validated p.G125V 1.000 144 0.7% 221 22.6% 1 100% benign(0.014) tolerated(0.19) neutral(0.050) NULL FAT4 79633 genome.wustl.edu 37 4 126240133 126240133 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024582.4 +1 validated p.R856K 1.000 226 0% 189 20.6% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT4 79633 genome.wustl.edu 37 4 126242264 126242264 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024582.4 +1 validated p.E1566D 1.000 179 0% 135 27.4% 0 - probably_damaging(0.985) tolerated(0.09) deleterious(0.728) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT4 79633 genome.wustl.edu 37 4 126371652 126371652 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024582.4 +1 validated p.E3161K 1.000 140 0% 67 28.4% 0 - benign(0.042) tolerated(1) neutral(0.003) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT4 79633 genome.wustl.edu 37 4 126398514 126398514 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000457801 +1 known p.C4131 0.003 193 0% 103 24.3% 0 - - - - superfamily_ConA_like_lec_gl FAT4 79633 genome.wustl.edu 37 4 126412412 126412412 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024582.4 +1 validated p.R4812M 0.999 85 0% 62 24.2% 0 - probably_damaging(0.999) tolerated(0.14) deleterious(0.740) NULL INTU 27152 genome.wustl.edu 37 4 128608910 128608910 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015693.3 +1 validated p.A446V 0.002 430 0% 113 20.4% 3 0% benign(0.077) tolerated(0.22) neutral(0.048) NULL PLK4 10733 genome.wustl.edu 37 4 128804640 128804640 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014264.3 +1 reviewed p.E90A 1.000 301 0% 342 11.1% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PLK4 10733 genome.wustl.edu 37 4 128815017 128815017 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014264.3 +1 reviewed p.A848V 0.423 139 0% 66 27.3% 7 0% benign(0) tolerated(0.51) neutral(0.009) superfamily_Kinase_like,HMMPfam_Sak_Polo MFSD8 256471 genome.wustl.edu 37 4 128842718 128842718 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152778.2 -1 reviewed p.S437 0.999 192 0.5% 98 20.4% 10 60% - - - HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter MFSD8 256471 genome.wustl.edu 37 4 128863229 128863229 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152778.2 -1 reviewed p.C175Y 1.000 411 0% 159 20.8% 5 0% possibly_damaging(0.731) deleterious(0.02) deleterious(0.650) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter MFSD8 256471 genome.wustl.edu 37 4 128886237 128886237 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152778.2 -1 reviewed p.P18T 0.086 57 0% 100 24% 5 60% probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL C4orf29 80167 genome.wustl.edu 37 4 128904141 128904141 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039717.1 +1 predicted p.R11W 1.000 402 0% 200 20% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C4orf29 80167 genome.wustl.edu 37 4 128949986 128949986 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039717.1 +1 predicted p.C352 1.000 67 0% 38 13.2% 5 60% - - - HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases LARP1B 55132 genome.wustl.edu 37 4 129043185 129043185 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018078.2 +1 reviewed p.P456S 1.000 271 0% 108 18.5% 3 0% possibly_damaging(0.712) tolerated(0.15) deleterious(0.498) NULL SCLT1 132320 genome.wustl.edu 37 4 130014223 130014223 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144643.2 -1 validated e1+2 1.000 340 0% 302 19.2% 0 - - - - - PCDH10 57575 genome.wustl.edu 37 4 134071798 134071798 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032961.1 +1 reviewed p.S168F 0.983 23 0% 30 16.7% 0 - benign(0.122) tolerated(0.67) neutral(0.013) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH18 54510 genome.wustl.edu 37 4 138442614 138442614 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019035.3 -1 reviewed p.D993N 0.898 103 0% 46 23.9% 15 0% benign(0.005) tolerated(0.15) neutral(0.241) NULL SLC7A11 23657 genome.wustl.edu 37 4 139153522 139153522 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014331.3 -1 validated p.A140D 1.000 160 0% 73 17.8% 1 0% probably_damaging(0.955) deleterious(0) deleterious(0.843) HMMPfam_AA_permease ELF2 1998 genome.wustl.edu 37 4 139980708 139980708 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201999.1 -1 validated p.K392T 1.000 188 0% 128 28.9% 20 50% probably_damaging(0.996) deleterious(0.05) deleterious(0.807) NULL NAA15 80155 genome.wustl.edu 37 4 140265403 140265403 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057175.3 +1 validated p.R201W 1.000 350 0% 316 22.5% 11 54.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_TPR-like NAA15 80155 genome.wustl.edu 37 4 140270622 140270622 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057175.3 +1 validated p.L233R 1.000 83 0% 116 10.3% 8 12.5% probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMSmart_SM00028,superfamily_TPR-like RAB33B 83452 genome.wustl.edu 37 4 140375402 140375402 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031296.1 +1 provisional p.A18V 0.000 100 0% 148 18.9% 3 33.3% unknown(0) tolerated(0.39) - NULL SETD7 80854 genome.wustl.edu 37 4 140450328 140450328 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030648.2 -1 validated p.T140N 1.000 347 0% 147 19% 3 66.6% probably_damaging(0.953) tolerated(0.29) neutral(0.426) superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain MAML3 55534 genome.wustl.edu 37 4 140646965 140646965 + Missense_Mutation SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018717.4 -1 validated p.R781G 1.000 305 0.3% 215 23.3% 3 33.3% probably_damaging(1) tolerated(0.31) deleterious(0.527) NULL CLGN 1047 genome.wustl.edu 37 4 141317276 141317276 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130675.1 -1 reviewed p.P323H 0.498 486 0.2% 294 19.4% 3 0% possibly_damaging(0.607) tolerated(0.07) deleterious(0.529) HMMPfam_Calreticulin,superfamily_P-domain of calnexin/calreticulin,PatternScan_CALRETICULIN_REPEAT ELMOD2 255520 genome.wustl.edu 37 4 141456900 141456900 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153702.2 +1 validated p.A62V 0.997 410 0% 344 23.5% 15 26.6% probably_damaging(0.998) tolerated(0.4) deleterious(0.490) NULL TBC1D9 23158 genome.wustl.edu 37 4 141590148 141590148 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015130.2 -1 validated p.R504H 1.000 106 0% 116 24.1% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Ypt/Rab-GAP domain of gyp1p TBC1D9 23158 genome.wustl.edu 37 4 141590942 141590942 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015130.2 -1 validated p.S428I 1.000 103 0% 68 23.5% 13 53.8% benign(0.168) tolerated(0.17) neutral(0.074) NULL ZNF330 27309 genome.wustl.edu 37 4 142153678 142153678 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014487.4 +1 validated e8-1 1.000 149 0% 72 23.6% 0 - - - - - GAB1 2549 genome.wustl.edu 37 4 144359272 144359272 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207123.2 +1 reviewed p.Q238H 0.998 268 0% 96 16.7% 2 0% probably_damaging(0.988) tolerated(0.11) deleterious(0.709) NULL GAB1 2549 genome.wustl.edu 37 4 144361037 144361037 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207123.2 +1 reviewed p.H426Q 1.000 494 0% 178 17.4% 0 - benign(0) tolerated(0.4) neutral(0.016) NULL SMARCA5 8467 genome.wustl.edu 37 4 144459854 144459854 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003601.2 +1 reviewed p.D536A 1.000 294 0% 143 21% 62 45.1% benign(0) deleterious(0.05) neutral(0.345) HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 SMARCA5 8467 genome.wustl.edu 37 4 144467147 144467147 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003601.2 +1 reviewed p.A823T 1.000 196 0% 78 20.5% 73 45.2% possibly_damaging(0.799) deleterious(0.02) deleterious(0.684) HMMPfam_HAND,superfamily_Nucl_remodel_ATPase_ISWI_HAND,superfamily_SSF52540 SMARCA5 8467 genome.wustl.edu 37 4 144471240 144471240 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003601.2 +1 reviewed p.R1026* 1.000 278 0% 154 22.7% 155 32.2% - - - NULL FREM3 166752 genome.wustl.edu 37 4 144542291 144542291 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329798 -1 known p.A1893V 0.990 251 0.4% 158 22.2% 0 - possibly_damaging(0.864) tolerated(0.07) deleterious(0.653) HMMPfam_Calx-beta,HMMSmart_SM00237 FREM3 166752 genome.wustl.edu 37 4 144548800 144548800 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329798 -1 known p.R1797C 0.994 530 0% 264 19.3% 0 - benign(0.2) deleterious(0) neutral(0.464) HMMPfam_Calx-beta,HMMSmart_SM00237 FREM3 166752 genome.wustl.edu 37 4 144617398 144617398 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329798 -1 known p.D1477E 0.988 322 0% 278 20.1% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL FREM3 166752 genome.wustl.edu 37 4 144617618 144617618 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329798 -1 known p.T1404N 1.000 354 0% 297 26.3% 0 - probably_damaging(1) tolerated(0.2) deleterious(0.549) NULL FREM3 166752 genome.wustl.edu 37 4 144618552 144618552 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329798 -1 known p.L1093I 0.970 165 0% 140 24.3% 0 - benign(0.325) tolerated(0.55) neutral(0.109) NULL ABCE1 6059 genome.wustl.edu 37 4 146029243 146029243 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040876.1 +1 reviewed p.A89V 1.000 353 0% 281 22.1% 37 43.2% benign(0.002) tolerated(0.36) neutral(0.020) superfamily_P-loop containing nucleoside triphosphate hydrolases OTUD4 54726 genome.wustl.edu 37 4 146067564 146067564 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102653.1 -1 reviewed p.R361I 1.000 247 0% 117 23.1% 9 55.5% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL MMAA 166785 genome.wustl.edu 37 4 146575237 146575237 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172250.2 +1 reviewed p.A304V 0.983 389 0% 246 24.4% 24 66.6% benign(0.014) tolerated(0.1) neutral(0.287) HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF827 152485 genome.wustl.edu 37 4 146744579 146744579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178835.3 -1 validated p.A793V 0.414 510 0% 260 20.8% 5 40% benign(0) tolerated(0.17) neutral(0.059) NULL ZNF827 152485 genome.wustl.edu 37 4 146806856 146806856 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178835.3 -1 validated p.A574V 1.000 172 0% 76 10.5% 1 100% benign(0.178) deleterious(0) neutral(0.461) NULL LSM6 11157 genome.wustl.edu 37 4 147108497 147108497 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007080.2 +1 validated p.L56 1.000 305 0% 202 11.4% 68 22% - - - HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins POU4F2 5458 genome.wustl.edu 37 4 147561858 147561858 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004575.2 +1 validated p.A376 1.000 47 0% 87 14.9% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like TMEM184C 55751 genome.wustl.edu 37 4 148555323 148555323 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018241.2 +1 validated p.R352Q 1.000 87 0% 36 22.2% 30 36.6% possibly_damaging(0.901) deleterious(0.04) deleterious(0.706) NULL PRMT10 90826 genome.wustl.edu 37 4 148575522 148575522 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138364.2 -1 provisional p.S509I 0.984 380 0% 138 19.6% 13 30.7% benign(0.11) tolerated(0.11) neutral(0.280) NULL NR3C2 4306 genome.wustl.edu 37 4 149035299 149035299 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000901.4 -1 reviewed p.Q919* 1.000 381 0% 124 16.1% 1 100% - - - HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor NR3C2 4306 genome.wustl.edu 37 4 149356524 149356524 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000901.4 -1 reviewed p.P497S 0.999 199 0% 125 25.6% 1 100% benign(0.005) tolerated(0.3) neutral(0.029) NULL NR3C2 4306 genome.wustl.edu 37 4 149357802 149357802 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000901.4 -1 reviewed p.L71I 1.000 167 0% 169 23.1% 0 - possibly_damaging(0.853) deleterious(0.01) deleterious(0.734) NULL LRBA 987 genome.wustl.edu 37 4 151388831 151388831 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000509835 -1 known p.C911Y 1.000 205 0% 49 18.4% 14 50% - - - HMMPfam_Beach,superfamily_BEACH domain SH3D19 152503 genome.wustl.edu 37 4 152069121 152069121 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009555.3 -1 validated p.L399 1.000 364 0% 206 20.9% 7 28.5% - - - superfamily_SH3-domain SH3D19 152503 genome.wustl.edu 37 4 152096028 152096028 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009555.3 -1 validated p.P163H 0.984 268 0% 194 21.1% 4 25% probably_damaging(0.984) deleterious(0.04) deleterious(0.779) NULL TIGD4 201798 genome.wustl.edu 37 4 153690845 153690845 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145720.2 -1 reviewed p.S438P 0.000 313 0% 300 23% 1 0% benign(0) tolerated(0.33) neutral(0.024) NULL FHDC1 85462 genome.wustl.edu 37 4 153896981 153896981 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033393.2 +1 validated p.G846 0.000 40 0% 41 24.4% 2 100% - - - NULL TRIM2 23321 genome.wustl.edu 37 4 154215568 154215568 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015271.3 +1 validated p.Q239 1.000 408 0% 336 22% 3 66.6% - - - HMMSmart_SM00502 TRIM2 23321 genome.wustl.edu 37 4 154216885 154216885 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015271.3 +1 validated p.V403M 1.000 107 0% 86 30.2% 8 62.5% possibly_damaging(0.625) tolerated(0.25) neutral(0.255) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin KIAA0922 23240 genome.wustl.edu 37 4 154523428 154523428 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015196.3 +1 validated p.F796 0.705 390 0% 95 25.3% 6 16.6% - - - NULL KIAA0922 23240 genome.wustl.edu 37 4 154557563 154557563 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015196.3 +1 validated p.T1555 0.952 208 0% 134 20.9% 44 31.8% - - - NULL RNF175 285533 genome.wustl.edu 37 4 154636799 154636799 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173662.2 -1 validated p.R216W 0.994 190 0% 128 22.7% 1 0% benign(0.219) deleterious(0.04) neutral(0.370) superfamily_RING/U-box DCHS2 54798 genome.wustl.edu 37 4 155219735 155219735 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017639.3 -1 validated p.P1456S 0.895 271 0% 76 21.1% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DCHS2 54798 genome.wustl.edu 37 4 155241810 155241810 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017639.3 -1 validated p.P1126S 0.029 592 0% 218 23.9% 0 - probably_damaging(0.955) tolerated(1) neutral(0.399) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DCHS2 54798 genome.wustl.edu 37 4 155243574 155243574 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017639.3 -1 validated p.S907L 0.279 437 0% 200 23% 0 - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DCHS2 54798 genome.wustl.edu 37 4 155254352 155254352 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017639.3 -1 validated p.A504E 0.998 110 0% 93 33.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DCHS2 54798 genome.wustl.edu 37 4 155256154 155256154 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017639.3 -1 validated p.A361V 0.999 319 0% 317 25.2% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_Cadherin-like PLRG1 5356 genome.wustl.edu 37 4 155463411 155463411 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002669.2 -1 provisional p.G205 1.000 292 0% 149 18.8% 32 43.7% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 FGB 2244 genome.wustl.edu 37 4 155491739 155491739 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005141.4 +1 reviewed p.K471N 1.000 349 0% 101 27.7% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like FGA 2243 genome.wustl.edu 37 4 155505313 155505313 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000508.3 -1 reviewed p.A855D 0.002 117 0.9% 51 23.5% 0 - probably_damaging(0.986) tolerated(0.26) deleterious(0.469) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like FGA 2243 genome.wustl.edu 37 4 155510004 155510004 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000508.3 -1 reviewed p.S102Y 0.986 501 0% 213 12.7% 0 - possibly_damaging(0.733) deleterious(0.02) deleterious(0.651) HMMPfam_Fib_alpha NPY2R 4887 genome.wustl.edu 37 4 156135606 156135606 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000910.2 +1 provisional p.A172V 1.000 35 0% 49 20.4% 0 - benign(0.144) tolerated(0.4) neutral(0.029) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NPY2R 4887 genome.wustl.edu 37 4 156136177 156136177 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000910.2 +1 provisional p.N362 0.996 187 0% 165 16.4% 0 - - - - NULL MAP9 79884 genome.wustl.edu 37 4 156274077 156274077 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039580.1 -1 validated p.A559T 0.997 274 0% 176 18.2% 2 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL MAP9 79884 genome.wustl.edu 37 4 156278657 156278657 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039580.1 -1 validated p.D355 0.935 367 0% 164 20.1% 2 50% - - - NULL CTSO 1519 genome.wustl.edu 37 4 156850724 156850724 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001334.2 -1 reviewed p.A270T 1.000 198 0% 66 16.7% 16 43.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001 CTSO 1519 genome.wustl.edu 37 4 156863605 156863605 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001334.2 -1 reviewed p.I83N 0.999 275 0% 169 17.8% 18 33.3% possibly_damaging(0.585) tolerated(0.48) neutral(0.212) superfamily_SSF54001 GRIA2 2891 genome.wustl.edu 37 4 158282224 158282224 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083619.1 +1 reviewed p.N785S 1.000 423 0% 151 21.2% 0 - probably_damaging(0.974) tolerated(0.06) deleterious(0.738) HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II FAM198B 51313 genome.wustl.edu 37 4 159091963 159091963 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031700.2 -1 validated p.R189* 0.000 66 0% 56 25% 4 0% - - - NULL RXFP1 59350 genome.wustl.edu 37 4 159533502 159533502 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021634.2 +1 provisional p.S223Y 1.000 350 0% 182 22.5% 1 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_L domain-like RXFP1 59350 genome.wustl.edu 37 4 159568147 159568147 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021634.2 +1 provisional p.P517H 1.000 426 0% 206 23.3% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like C4orf46 201725 genome.wustl.edu 37 4 159590812 159590812 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008393.2 -1 validated p.R99W 0.950 276 0.7% 299 26.1% 12 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ETFDH 2110 genome.wustl.edu 37 4 159603419 159603419 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004453.2 +1 reviewed p.A83V 1.000 310 0% 175 18.3% 9 22.2% possibly_damaging(0.821) deleterious(0) deleterious(0.755) HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain FNIP2 57600 genome.wustl.edu 37 4 159750356 159750356 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020840.1 +1 validated p.K120N 0.995 240 0% 220 16.8% 1 100% probably_damaging(0.994) tolerated(0.12) deleterious(0.713) NULL FNIP2 57600 genome.wustl.edu 37 4 159789962 159789962 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020840.1 +1 validated p.A725V 0.001 21 0% 17 29.4% 3 66.6% benign(0) tolerated(0.71) neutral(0.002) NULL FNIP2 57600 genome.wustl.edu 37 4 159791585 159791585 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020840.1 +1 validated p.K971N 1.000 167 0% 128 17.2% 3 66.6% probably_damaging(0.971) deleterious(0.04) deleterious(0.762) NULL RAPGEF2 9693 genome.wustl.edu 37 4 160273838 160273838 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000510253 +1 known p.A185V 0.986 187 0% 166 21.7% 8 87.5% - - - NULL FSTL5 56884 genome.wustl.edu 37 4 162421226 162421226 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020116.3 -1 validated p.P467L 1.000 450 0% 162 21% 0 - probably_damaging(0.975) deleterious(0) deleterious(0.861) superfamily_Amine_DH_B_like NAF1 92345 genome.wustl.edu 37 4 164048258 164048258 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128931.1 -1 validated p.I348T 0.002 133 0% 81 13.6% 1 0% benign(0) tolerated(0.15) neutral(0.241) NULL NAF1 92345 genome.wustl.edu 37 4 164054353 164054353 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138386.2 -1 validated p.S329Y 0.960 680 0% 399 20.3% 21 33.3% benign(0.377) deleterious(0.02) deleterious(0.504) HMMPfam_NAF1 NPY1R 4886 genome.wustl.edu 37 4 164246499 164246499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000909.4 -1 validated p.A371T 0.007 328 0% 235 18.7% 0 - benign(0) deleterious(0.03) neutral(0.364) NULL NPY5R 4889 genome.wustl.edu 37 4 164271440 164271440 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006174.2 +1 provisional p.L5 0.940 138 0.7% 205 21% 0 - - - - superfamily_SSF81321 TRIM60 166655 genome.wustl.edu 37 4 165962177 165962177 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152620.2 +1 reviewed p.R318Q 0.000 262 0% 250 21.6% 0 - benign(0.04) tolerated(0.3) neutral(0.031) HMMSmart_PRY TRIM75 391714 genome.wustl.edu 37 4 165981094 165981094 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000322402 +1 known p.S265 0.000 83 1.2% 50 32% 0 - - - - NULL TMEM192 201931 genome.wustl.edu 37 4 166024249 166024249 + Splice_Site SNP C C A rs112288743 byCluster TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100389.1 -1 validated e2-1 1.000 336 0.3% 185 23.8% 0 - - - - - CPE 1363 genome.wustl.edu 37 4 166385567 166385567 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001873.2 +1 reviewed p.G111 1.000 373 0% 108 25% 6 33.3% - - - HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases CPE 1363 genome.wustl.edu 37 4 166405592 166405592 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001873.2 +1 reviewed p.S270N 1.000 415 0% 193 11.4% 18 0% probably_damaging(0.993) tolerated(0.1) deleterious(0.736) HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases TLL1 7092 genome.wustl.edu 37 4 166910580 166910580 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012464.3 +1 reviewed p.F73V 1.000 428 0% 215 16.7% 0 - benign(0.314) deleterious(0.02) deleterious(0.481) NULL TLL1 7092 genome.wustl.edu 37 4 166963202 166963202 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012464.3 +1 reviewed p.P429S 1.000 467 0% 119 15.1% 0 - possibly_damaging(0.755) deleterious(0.05) deleterious(0.624) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain TLL1 7092 genome.wustl.edu 37 4 166996043 166996043 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012464.3 +1 reviewed p.C734* 1.000 311 0% 54 11.1% 0 - - - - superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin SPOCK3 50859 genome.wustl.edu 37 4 167658640 167658640 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016950.2 -1 validated p.R373S 0.999 694 0% 131 12.2% 0 - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,superfamily_Thyroglobulin type-1 domain ANXA10 11199 genome.wustl.edu 37 4 169049272 169049272 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007193.3 +1 reviewed p.P19H 0.958 446 0% 157 17.8% 2 100% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_Annexin DDX60L 91351 genome.wustl.edu 37 4 169379042 169379042 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012967.1 -1 validated e5+1 0.958 206 0% 183 24% 0 - - - - - DDX60L 91351 genome.wustl.edu 37 4 169392897 169392897 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012967.1 -1 validated e3+1 1.000 194 0% 116 28.4% 0 - - - - - PALLD 23022 genome.wustl.edu 37 4 169432836 169432836 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016081.3 +1 reviewed p.E61K 0.186 70 1.4% 27 25.9% 0 - possibly_damaging(0.811) tolerated(0.17) neutral(0.364) NULL PALLD 23022 genome.wustl.edu 37 4 169432957 169432957 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016081.3 +1 reviewed p.P101H 0.000 43 0% 23 30.4% 0 - possibly_damaging(0.46) deleterious(0) deleterious(0.596) NULL NEK1 4750 genome.wustl.edu 37 4 170321776 170321776 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012224.1 -1 validated p.E1176K 1.000 298 0% 165 18.8% 12 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL NEK1 4750 genome.wustl.edu 37 4 170429434 170429434 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012224.1 -1 validated p.R572C 1.000 475 0% 319 18.8% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CLCN3 1182 genome.wustl.edu 37 4 170616784 170616784 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173872.2 +1 validated p.A320T 1.000 189 0% 81 13.6% 8 62.5% probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_Voltage_CLC,superfamily_Cl-channel_core CLCN3 1182 genome.wustl.edu 37 4 170625282 170625282 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173872.2 +1 validated p.A566V 1.000 589 0% 212 23.1% 28 46.4% benign(0) tolerated(0.45) neutral(0.012) HMMPfam_Voltage_CLC,superfamily_Cl-channel_core AADAT 51166 genome.wustl.edu 37 4 170999712 170999712 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016228.3 -1 reviewed p.P131H 1.000 266 0% 160 24.4% 3 66.6% probably_damaging(0.989) deleterious(0.03) deleterious(0.804) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases GALNTL6 442117 genome.wustl.edu 37 4 172735833 172735833 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001034845.2 +1 validated p.K34N 1.000 337 0% 492 20.3% 0 - possibly_damaging(0.888) deleterious(0.03) deleterious(0.712) NULL SAP30 8819 genome.wustl.edu 37 4 174295169 174295169 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003864.3 +1 reviewed p.N174T 1.000 350 0% 406 21.2% 58 56.8% benign(0) tolerated(0.35) neutral(0.021) NULL FBXO8 26269 genome.wustl.edu 37 4 175158594 175158594 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012180.2 -1 reviewed p.N310S 1.000 223 0% 99 16.2% 18 16.6% probably_damaging(0.987) tolerated(0.28) neutral(0.468) HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain HPGD 3248 genome.wustl.edu 37 4 175413214 175413214 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000860.4 -1 reviewed p.L232F 1.000 390 0% 244 23.8% 0 - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) superfamily_NAD(P)-bd GLRA3 8001 genome.wustl.edu 37 4 175598318 175598318 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006529.2 -1 validated p.D280N 1.000 231 0% 93 25.8% 0 - benign(0.422) tolerated(0.26) neutral(0.171) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore ADAM29 11086 genome.wustl.edu 37 4 175897402 175897402 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130703.1 +1 reviewed p.K242N 0.000 220 0.5% 56 19.6% 0 - benign(0.081) tolerated(0.62) neutral(0.010) "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" GPM6A 2823 genome.wustl.edu 37 4 176573098 176573098 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005277.3 -1 validated p.G143V 1.000 197 0% 88 21.6% 0 - probably_damaging(1) tolerated(0.26) deleterious(0.534) HMMPfam_Myelin_PLP GPM6A 2823 genome.wustl.edu 37 4 176622762 176622762 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005277.3 -1 validated p.A65V 1.000 165 0% 73 21.9% 0 - benign(0) tolerated(0.45) neutral(0.012) HMMPfam_Myelin_PLP SPATA4 132851 genome.wustl.edu 37 4 177113888 177113888 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144644.2 -1 provisional p.R193M 0.814 266 0% 247 19% 1 0% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) HMMPfam_DUF1042 ASB5 140458 genome.wustl.edu 37 4 177138038 177138038 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080874.2 -1 reviewed p.E265* 1.000 544 0% 231 28.6% 0 - - - - superfamily_Ankyrin repeat ASB5 140458 genome.wustl.edu 37 4 177146493 177146493 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080874.2 -1 reviewed e2-1 1.000 184 0% 115 27.8% 0 - - - - - NEIL3 55247 genome.wustl.edu 37 4 178260995 178260995 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018248.2 +1 validated p.S229I 1.000 284 0.4% 125 15.2% 5 20% probably_damaging(0.992) deleterious(0.04) deleterious(0.796) superfamily_S13-like H2TH domain,HMMPfam_H2TH AGA 175 genome.wustl.edu 37 4 178358577 178358577 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000027.3 -1 reviewed p.R202C 0.000 444 0% 461 20.4% 26 23% benign(0.016) tolerated(0.06) neutral(0.323) HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) ODZ3 55714 genome.wustl.edu 37 4 183650143 183650143 + Silent SNP C C T rs181078136 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080477.1 +1 provisional p.P798 0.980 213 0% 96 24% 0 - - - - superfamily_ConA_like_lec_gl ODZ3 55714 genome.wustl.edu 37 4 183713427 183713427 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080477.1 +1 provisional p.S1868T 1.000 84 0% 141 22% 0 - benign(0.002) tolerated(0.16) neutral(0.059) NULL ODZ3 55714 genome.wustl.edu 37 4 183714417 183714417 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080477.1 +1 provisional p.R2198C 1.000 296 0% 300 23.7% 0 - benign(0.044) tolerated(0.11) neutral(0.274) NULL DCTD 1635 genome.wustl.edu 37 4 183836077 183836077 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012732.1 -1 reviewed p.Y92 0.840 325 0% 336 28% 85 10.5% - - - HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like LOC391722 391722 genome.wustl.edu 37 4 185220693 185220693 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_373042.2 -1 model p.E241D 1.000 371 0% 170 21.8% 2 0% - - - HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand IRF2 3660 genome.wustl.edu 37 4 185329365 185329365 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002199.3 -1 reviewed p.A159V 1.000 383 0.5% 196 23.5% 34 2.9% benign(0.1) tolerated(0.28) neutral(0.039) NULL CASP3 836 genome.wustl.edu 37 4 185550641 185550641 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004346.3 -1 reviewed p.R207* 1.000 135 0% 63 27% 60 46.6% - - - HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like ACSL1 2180 genome.wustl.edu 37 4 185697653 185697653 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001995.2 -1 reviewed p.S247R 0.867 207 0% 85 23.5% 9 44.4% probably_damaging(0.976) tolerated(0.08) deleterious(0.718) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ACSL1 2180 genome.wustl.edu 37 4 185724543 185724543 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001995.2 -1 reviewed p.F42L 1.000 191 0% 98 23.5% 9 66.6% possibly_damaging(0.819) tolerated(0.39) neutral(0.326) NULL SLC25A4 291 genome.wustl.edu 37 4 186066045 186066045 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001151.3 +1 reviewed p.R80H 1.000 321 0% 385 25.7% 68 27.9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Mitoch_carrier,HMMPfam_Mito_carr SLC25A4 291 genome.wustl.edu 37 4 186066328 186066328 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001151.3 +1 reviewed p.Y174 1.000 100 0% 158 24.1% 82 42.6% - - - superfamily_Mitoch_carrier,HMMPfam_Mito_carr SNX25 83891 genome.wustl.edu 37 4 186231801 186231801 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031953.2 +1 validated p.A228V 1.000 257 0% 109 20.2% 13 30.7% benign(0.056) tolerated(0.1) neutral(0.290) NULL SNX25 83891 genome.wustl.edu 37 4 186241934 186241934 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031953.2 +1 validated p.H300 0.994 440 0% 196 20.4% 6 50% - - - HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam SNX25 83891 genome.wustl.edu 37 4 186260646 186260646 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031953.2 +1 validated p.A512 0.581 125 0% 63 27% 7 57.1% - - - HMMPfam_PX,HMMSmart_PX,superfamily_PX SNX25 83891 genome.wustl.edu 37 4 186263165 186263165 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031953.2 +1 validated p.Y530* 1.000 363 0% 192 18.8% 11 27.2% - - - HMMPfam_PX,HMMSmart_PX,superfamily_PX LRP2BP 55805 genome.wustl.edu 37 4 186294141 186294141 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018409.3 -1 validated p.R224 0.772 213 0.5% 116 12.9% 1 0% - - - HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like LRP2BP 55805 genome.wustl.edu 37 4 186298144 186298144 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018409.3 -1 validated p.K45N 0.770 432 0% 220 20.5% 0 - possibly_damaging(0.546) tolerated(0.27) neutral(0.219) NULL UFSP2 55325 genome.wustl.edu 37 4 186336957 186336957 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018359.3 -1 validated p.I133T 1.000 270 0% 180 25% 23 52.1% benign(0) tolerated(0.51) neutral(0.009) NULL FAM149A 25854 genome.wustl.edu 37 4 187075773 187075773 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006655.2 +1 validated p.A122T 1.000 369 0% 414 20% 15 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM149A 25854 genome.wustl.edu 37 4 187088146 187088146 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006655.2 +1 validated p.R397C 0.005 132 0% 106 22.6% 29 51.7% benign(0.007) deleterious(0.02) neutral(0.383) NULL CYP4V2 285440 genome.wustl.edu 37 4 187118184 187118184 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207352.3 +1 reviewed p.E168 1.000 363 0% 385 20% 5 40% - - - HMMPfam_p450,superfamily_Cytochrome P450 KLKB1 3818 genome.wustl.edu 37 4 187179181 187179181 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000892.3 +1 reviewed p.S578A 1.000 166 0% 92 28.3% 1 100% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER F11 2160 genome.wustl.edu 37 4 187205291 187205291 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000128.3 +1 reviewed p.S394Y 0.612 188 0% 159 11.9% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases FAT1 2195 genome.wustl.edu 37 4 187510244 187510244 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.D4423E 1.000 238 0% 149 22.1% 177 51.9% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL FAT1 2195 genome.wustl.edu 37 4 187517826 187517826 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.E4290K 1.000 203 0.5% 138 29% 109 40.3% benign(0.196) deleterious(0.04) neutral(0.367) NULL FAT1 2195 genome.wustl.edu 37 4 187518042 187518042 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.D4218Y 1.000 274 0% 166 15.1% 85 25.8% benign(0.015) tolerated(0.06) neutral(0.323) NULL FAT1 2195 genome.wustl.edu 37 4 187532735 187532735 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.V3220I 0.994 126 0% 65 15.4% 18 55.5% possibly_damaging(0.447) tolerated(0.48) neutral(0.157) HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187541018 187541018 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.P2241H 0.986 219 0% 75 17.3% 3 66.6% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187554940 187554940 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.G1407 0.998 415 0% 188 22.9% 1 100% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187557292 187557292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.S1357L 0.090 214 0% 109 16.5% 2 50% benign(0.026) tolerated(0.35) neutral(0.022) superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187627791 187627791 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.R1064I 1.000 196 0% 160 29.4% 4 25% benign(0) deleterious(0.01) neutral(0.406) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187628079 187628079 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.D968G 1.000 194 0% 143 29.4% 4 75% probably_damaging(0.968) deleterious(0.04) deleterious(0.759) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187629167 187629167 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.Q605H 0.997 188 0% 137 23.4% 2 50% possibly_damaging(0.753) deleterious(0.02) deleterious(0.659) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT1 2195 genome.wustl.edu 37 4 187629862 187629862 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005245.3 -1 reviewed p.A374S 1.000 325 0% 308 23.4% 2 50% benign(0.022) deleterious(0) neutral(0.446) HMMPfam_Cadherin,superfamily_Cadherin-like TUBB7P 56604 genome.wustl.edu 37 4 190905636 190905636 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020040.3 -1 validated p.Q43H 1.000 62 0% 56 25% 2 0% - - - HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like PLEKHG4B 153478 genome.wustl.edu 37 5 161898 161898 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052909.3 +1 validated p.Q474* 0.750 79 0% 68 30.9% 0 - - - - NULL PLEKHG4B 153478 genome.wustl.edu 37 5 169626 169626 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052909.3 +1 validated p.D860 1.000 82 0% 81 21% 0 - - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) SDHA 6389 genome.wustl.edu 37 5 226018 226018 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004168.2 +1 reviewed p.P159 0.152 244 0% 212 20.8% 97 32.9% - - - HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain SDHA 6389 genome.wustl.edu 37 5 228384 228384 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004168.2 +1 reviewed p.A236T 1.000 363 0% 383 12.3% 206 20.8% probably_damaging(0.983) deleterious(0.02) deleterious(0.812) HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain SDHA 6389 genome.wustl.edu 37 5 235284 235284 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004168.2 +1 reviewed p.V364I 1.000 78 0% 57 21.1% 211 42.6% benign(0.003) tolerated(1) - HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein catalytic domain SDHA 6389 genome.wustl.edu 37 5 240475 240475 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004168.2 +1 reviewed p.D479N 1.000 150 0% 158 15.2% 169 40.8% benign(0.343) tolerated(0.1) neutral(0.394) superfamily_FAD/NAD(P)-binding domain AHRR 57491 genome.wustl.edu 37 5 423956 423956 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020731.3 +1 reviewed p.G195E 1.000 46 0% 29 20.7% 1 0% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL AHRR 57491 genome.wustl.edu 37 5 434249 434249 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020731.3 +1 reviewed p.S487I 0.699 40 0% 56 12.5% 0 - benign(0.009) deleterious(0.01) neutral(0.406) NULL EXOC3 11336 genome.wustl.edu 37 5 453896 453896 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007277.4 +1 reviewed p.R259K 1.000 204 0% 151 22.5% 35 37.1% probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_Sec6 CEP72 55722 genome.wustl.edu 37 5 620290 620290 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018140.3 +1 reviewed p.V106A 0.999 200 0% 198 15.2% 11 54.5% possibly_damaging(0.917) deleterious(0.01) deleterious(0.774) superfamily_SSF52058 CEP72 55722 genome.wustl.edu 37 5 624597 624597 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018140.3 +1 reviewed p.V139M 0.997 81 0% 69 17.4% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52058 CEP72 55722 genome.wustl.edu 37 5 637688 637688 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018140.3 +1 reviewed p.M321L 0.002 94 0% 113 18.6% 10 20% benign(0.093) tolerated(0.09) neutral(0.303) NULL TPPP 11076 genome.wustl.edu 37 5 665308 665308 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007030.2 -1 validated p.A190V 0.994 111 0% 97 26.8% 4 25% benign(0.263) deleterious(0.03) neutral(0.392) HMMPfam_p25-alpha TPPP 11076 genome.wustl.edu 37 5 677980 677980 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007030.2 -1 validated p.A66T 1.000 28 0% 27 14.8% 2 50% benign(0.014) tolerated(0.08) neutral(0.300) HMMPfam_p25-alpha TRIP13 9319 genome.wustl.edu 37 5 912006 912006 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004237.3 +1 reviewed p.I305 1.000 144 0% 162 25.9% 45 33.3% - - - HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC12A7 10723 genome.wustl.edu 37 5 1060510 1060510 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006598.2 -1 validated p.R932 0.999 197 0% 300 17% 45 35.5% - - - NULL TERT 7015 genome.wustl.edu 37 5 1255478 1255478 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198253.2 -1 reviewed p.K1027N 0.028 260 0% 198 25.8% 3 66.6% benign(0.201) tolerated(0.53) neutral(0.026) NULL CLPTM1L 81037 genome.wustl.edu 37 5 1335227 1335227 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030782.3 -1 provisional p.G247 0.575 60 0% 61 21.3% 99 32.3% - - - HMMPfam_CLPTM1 CLPTM1L 81037 genome.wustl.edu 37 5 1341901 1341901 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030782.3 -1 provisional p.A113D 0.994 232 0% 289 21.5% 86 43% benign(0.009) tolerated(0.51) neutral(0.009) HMMPfam_CLPTM1 SLC6A3 6531 genome.wustl.edu 37 5 1401090 1401090 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001044.4 -1 reviewed p.Y593 0.947 90 0% 143 29.4% 0 - - - - HMMPfam_SNF SLC6A3 6531 genome.wustl.edu 37 5 1411361 1411361 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001044.4 -1 reviewed p.S422 0.118 41 0% 51 25.5% 0 - - - - HMMPfam_SNF SLC6A3 6531 genome.wustl.edu 37 5 1411428 1411428 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001044.4 -1 reviewed p.T400M 0.998 50 0% 65 21.5% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_SNF IRX4 50805 genome.wustl.edu 37 5 1879664 1879664 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016358.2 -1 validated p.G230 0.000 69 0% 78 35.9% 0 - - - - NULL IRX2 153572 genome.wustl.edu 37 5 2749749 2749749 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134222.1 -1 validated p.N134 1.000 343 0% 332 25.6% 0 - - - - HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like C5orf38 153571 genome.wustl.edu 37 5 2752465 2752465 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178569.2 +1 provisional p.A29 0.004 19 0% 22 40.9% 1 0% - - - NULL C5orf38 153571 genome.wustl.edu 37 5 2752557 2752557 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178569.2 +1 provisional p.R60Q 0.001 27 0% 30 20% 0 - unknown(0) - - NULL IRX1 79192 genome.wustl.edu 37 5 3599686 3599686 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024337.3 +1 validated p.S208 1.000 110 0% 135 27.4% 0 - - - - NULL IRX1 79192 genome.wustl.edu 37 5 3600227 3600227 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024337.3 +1 validated p.R389C 1.000 27 0% 35 37.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ADAMTS16 170690 genome.wustl.edu 37 5 5191886 5191886 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139056.2 +1 reviewed p.A432 0.984 276 0% 117 17.1% 2 100% - - - "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" ADAMTS16 170690 genome.wustl.edu 37 5 5235133 5235133 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139056.2 +1 reviewed p.S619 0.004 48 0% 58 19% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ADAMTS16 170690 genome.wustl.edu 37 5 5239298 5239298 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139056.2 +1 reviewed p.A730V 0.998 511 0% 252 25.4% 1 100% probably_damaging(0.997) tolerated(0.07) deleterious(0.785) NULL KIAA0947 23379 genome.wustl.edu 37 5 5462444 5462444 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015325.1 +1 validated p.G999 0.000 95 1.1% 67 26.9% 3 66.6% - - - NULL KIAA0947 23379 genome.wustl.edu 37 5 5463952 5463952 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015325.1 +1 validated p.S1502N 0.006 114 0% 67 25.4% 1 100% possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL KIAA0947 23379 genome.wustl.edu 37 5 5466585 5466585 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015325.1 +1 validated p.R2011C 0.990 587 0% 424 21.7% 11 18.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL UBE2QL1 134111 genome.wustl.edu 37 5 6491416 6491416 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145161.1 +1 provisional p.T147M 1.000 162 0% 66 21.2% 1 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like NSUN2 54888 genome.wustl.edu 37 5 6620217 6620217 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017755.4 -1 validated e7+2 1.000 251 0% 138 17.4% 0 - - - - - LOC442132 442132 genome.wustl.edu 37 5 7302387 7302387 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_040018.2 -1 model NULL 0.025 181 0% 152 19.1% 0 - - - - - ADCY2 108 genome.wustl.edu 37 5 7757687 7757687 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020546.2 +1 reviewed p.A694 0.294 91 0% 60 26.7% 0 - - - - NULL MTRR 4552 genome.wustl.edu 37 5 7878283 7878283 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024010.2 +1 reviewed p.N237Y 0.035 289 0% 224 21% 11 18.1% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL MTRR 4552 genome.wustl.edu 37 5 7900042 7900042 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024010.2 +1 reviewed p.M683I 1.000 257 0% 76 17.1% 16 31.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain MTRR 4552 genome.wustl.edu 37 5 7900125 7900125 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024010.2 +1 reviewed p.A711V 0.998 260 0% 73 17.8% 14 50% probably_damaging(0.999) tolerated(0.44) deleterious(0.503) superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain SEMA5A 9037 genome.wustl.edu 37 5 9066649 9066649 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003966.2 -1 reviewed p.R728Q 1.000 187 0% 75 20% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SEMA5A 9037 genome.wustl.edu 37 5 9224912 9224912 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003966.2 -1 reviewed p.T174A 1.000 198 0.5% 100 17% 0 - benign(0.003) tolerated(0.15) neutral(0.241) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema CCT5 22948 genome.wustl.edu 37 5 10262641 10262641 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012073.3 +1 reviewed p.R410 1.000 471 0.2% 143 21% 451 31.4% - - - HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like MARCH6 10299 genome.wustl.edu 37 5 10414578 10414578 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005885.2 +1 provisional p.L644V 0.746 828 0% 256 14.8% 35 28.5% benign(0.166) tolerated(0.43) neutral(0.028) NULL ROPN1L 83853 genome.wustl.edu 37 5 10442411 10442411 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031916.3 +1 reviewed e1+1 1.000 30 0% 22 36.4% 0 - - - - - CTNND2 1501 genome.wustl.edu 37 5 10973708 10973708 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001332.2 -1 validated p.R1179C 1.000 197 0% 84 14.3% 1 0% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) NULL CTNND2 1501 genome.wustl.edu 37 5 11346502 11346502 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001332.2 -1 validated p.S537I 1.000 217 0% 189 22.2% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) superfamily_ARM repeat CTNND2 1501 genome.wustl.edu 37 5 11346684 11346684 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001332.2 -1 validated p.H476 0.778 91 0% 48 35.4% 0 - - - - NULL DNAH5 1767 genome.wustl.edu 37 5 13714703 13714703 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001369.2 -1 reviewed p.E4312D 1.000 91 0% 23 26.1% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Dynein_heavy DNAH5 1767 genome.wustl.edu 37 5 13729569 13729569 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001369.2 -1 reviewed p.Q3954H 1.000 239 0% 66 10.6% 1 0% benign(0.006) tolerated(0.15) neutral(0.241) HMMPfam_Dynein_heavy DNAH5 1767 genome.wustl.edu 37 5 13792282 13792282 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001369.2 -1 reviewed p.E2757K 0.997 257 0% 116 16.4% 0 - benign(0) tolerated(0.68) neutral(0.002) HMMSmart_AAA,superfamily_SSF52540 DNAH5 1767 genome.wustl.edu 37 5 13811853 13811853 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001369.2 -1 reviewed p.R2437H 1.000 174 0% 258 20.5% 0 - benign(0.006) tolerated(0.13) neutral(0.253) NULL DNAH5 1767 genome.wustl.edu 37 5 13865886 13865886 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001369.2 -1 reviewed p.Y1416H 1.000 238 0% 59 22% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DHC_N2 DNAH5 1767 genome.wustl.edu 37 5 13883102 13883102 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001369.2 -1 reviewed p.D1029Y 1.000 349 0.3% 168 19.6% 0 - possibly_damaging(0.768) deleterious(0.01) deleterious(0.691) NULL LOC100289578 100289578 genome.wustl.edu 37 5 14297252 14297252 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342489.1 -1 model p.R73* 0.590 142 0% 69 21.7% 2 0% - - - NULL TRIO 7204 genome.wustl.edu 37 5 14364800 14364800 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007118.2 +1 validated p.R877W 0.992 186 0% 136 21.3% 1 100% unknown(0) deleterious(0) - superfamily_Spectrin repeat TRIO 7204 genome.wustl.edu 37 5 14387715 14387715 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007118.2 +1 validated p.G1247R 1.000 315 0% 356 23% 8 50% unknown(0) tolerated(0.05) - NULL TRIO 7204 genome.wustl.edu 37 5 14397162 14397162 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007118.2 +1 validated p.T1441M 1.000 433 0% 229 23.1% 5 20% unknown(0) deleterious(0.03) - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) TRIO 7204 genome.wustl.edu 37 5 14406051 14406051 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007118.2 +1 validated p.P1604L 1.000 46 0% 21 33.3% 1 0% unknown(0) deleterious(0) - NULL TRIO 7204 genome.wustl.edu 37 5 14508111 14508111 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007118.2 +1 validated p.F2958 0.993 226 0% 199 22.1% 28 46.4% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase FAM105B 90268 genome.wustl.edu 37 5 14693038 14693038 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138348.4 +1 validated p.E314* 1.000 230 0% 87 16.1% 18 44.4% - - - NULL ANKH 56172 genome.wustl.edu 37 5 14711333 14711333 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054027.4 -1 reviewed p.I484 0.992 190 0% 144 19.4% 21 0% - - - NULL ANKH 56172 genome.wustl.edu 37 5 14713076 14713076 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054027.4 -1 reviewed p.H424 0.216 24 0% 30 16.7% 7 0% - - - NULL FBXL7 23194 genome.wustl.edu 37 5 15928122 15928122 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012304.3 +1 reviewed p.T84M 1.000 23 0% 40 27.5% 1 0% probably_damaging(0.987) deleterious(0.04) deleterious(0.785) NULL FBXL7 23194 genome.wustl.edu 37 5 15928534 15928534 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012304.3 +1 reviewed p.G221 1.000 144 0% 156 25% 1 0% - - - HMMSmart_SM00367,superfamily_RNI-like ZNF622 90441 genome.wustl.edu 37 5 16451822 16451822 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033414.2 -1 provisional p.G460* 1.000 481 0% 264 19.7% 73 46.5% - - - NULL MYO10 4651 genome.wustl.edu 37 5 16668435 16668435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012334.2 -1 validated p.T2009M 0.869 212 0% 117 21.4% 24 12.5% possibly_damaging(0.874) deleterious(0) deleterious(0.784) NULL MYO10 4651 genome.wustl.edu 37 5 16675213 16675213 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012334.2 -1 validated p.K1571N 1.000 339 0% 157 24.2% 10 80% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMSmart_MyTH4 MYO10 4651 genome.wustl.edu 37 5 16676255 16676255 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012334.2 -1 validated p.C1517* 1.000 479 0% 332 22.3% 15 6.6% - - - superfamily_SSF50729 MYO10 4651 genome.wustl.edu 37 5 16694687 16694687 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012334.2 -1 validated p.V1198A 1.000 126 0% 63 33.3% 8 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF50729 MYO10 4651 genome.wustl.edu 37 5 16769225 16769225 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012334.2 -1 validated p.E340* 1.000 319 0% 131 15.3% 0 - - - - HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 CDH18 1016 genome.wustl.edu 37 5 19571773 19571773 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004934.3 -1 reviewed p.M390V 0.996 303 0% 107 17.8% 0 - benign(0.001) tolerated(0.17) neutral(0.059) HMMPfam_Cadherin,superfamily_Cadherin CDH12 1010 genome.wustl.edu 37 5 21751896 21751896 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004061.3 -1 reviewed p.A779T 1.000 312 0% 147 25.9% 1 100% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Cadherin_C PRDM9 56979 genome.wustl.edu 37 5 23527470 23527470 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020227.2 +1 provisional p.R758H 0.007 243 0% 64 12.5% 0 - possibly_damaging(0.693) deleterious(0.04) deleterious(0.597) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CDH10 1008 genome.wustl.edu 37 5 24488023 24488023 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006727.2 -1 reviewed p.D706N 0.986 265 0% 88 20.5% 0 - probably_damaging(0.957) tolerated(0.39) neutral(0.417) HMMPfam_Cadherin_C CDH10 1008 genome.wustl.edu 37 5 24493011 24493011 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006727.2 -1 reviewed p.V513 0.974 304 0% 137 12.4% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH10 1008 genome.wustl.edu 37 5 24511480 24511480 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006727.2 -1 reviewed p.V320M 0.002 306 0% 122 12.3% 0 - benign(0) tolerated(0.22) neutral(0.042) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH10 1008 genome.wustl.edu 37 5 24535300 24535300 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006727.2 -1 reviewed p.Q245H 1.000 454 0% 180 23.3% 0 - probably_damaging(0.979) tolerated(0.39) neutral(0.438) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH9 1007 genome.wustl.edu 37 5 26881547 26881547 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016279.3 -1 reviewed p.R690W 0.901 403 0% 186 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin_C CDH9 1007 genome.wustl.edu 37 5 26881722 26881722 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016279.3 -1 reviewed p.V631 0.998 129 0% 111 24.3% 0 - - - - NULL CDH9 1007 genome.wustl.edu 37 5 26885735 26885735 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016279.3 -1 reviewed p.L624I 0.690 80 1.3% 34 17.6% 0 - benign(0) tolerated(0.76) neutral(0.001) NULL CDH9 1007 genome.wustl.edu 37 5 26915851 26915851 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016279.3 -1 reviewed p.R137Q 0.129 249 0% 135 20.7% 0 - benign(0.164) tolerated(0.16) neutral(0.074) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH6 1004 genome.wustl.edu 37 5 31299656 31299656 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004932.2 +1 reviewed p.G243 1.000 336 0% 74 14.9% 9 44.4% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH6 1004 genome.wustl.edu 37 5 31322997 31322997 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004932.2 +1 reviewed p.I652S 1.000 234 0% 172 18% 8 37.5% possibly_damaging(0.596) deleterious(0) deleterious(0.650) HMMPfam_Cadherin_C DROSHA 29102 genome.wustl.edu 37 5 31526936 31526936 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013235.4 -1 validated p.R35M 0.997 130 0% 84 28.6% 5 40% unknown(0) deleterious(0) - NULL PDZD2 23037 genome.wustl.edu 37 5 32000346 32000346 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178140.2 +1 reviewed p.T408M 0.981 244 0.8% 160 21.9% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like PDZD2 23037 genome.wustl.edu 37 5 32087468 32087468 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178140.2 +1 reviewed p.T1305I 0.000 61 0% 43 20.9% 0 - benign(0.327) deleterious(0) deleterious(0.547) NULL MTMR12 54545 genome.wustl.edu 37 5 32239137 32239137 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040446.1 -1 reviewed p.C438 1.000 191 0% 110 25.5% 10 20% - - - superfamily_(Phosphotyrosine protein) phosphatases II MTMR12 54545 genome.wustl.edu 37 5 32239257 32239257 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040446.1 -1 reviewed p.C398 1.000 154 0% 95 20% 13 53.8% - - - superfamily_(Phosphotyrosine protein) phosphatases II MTMR12 54545 genome.wustl.edu 37 5 32239270 32239270 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040446.1 -1 reviewed p.A394V 0.976 139 0% 84 23.8% 10 40% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_(Phosphotyrosine protein) phosphatases II ZFR 51663 genome.wustl.edu 37 5 32385755 32385755 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016107.3 -1 validated p.V834I 1.000 404 0.2% 151 23.2% 31 32.2% possibly_damaging(0.643) tolerated(0.2) neutral(0.275) HMMPfam_DZF,HMMSmart_DZF TARS 6897 genome.wustl.edu 37 5 33441204 33441204 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152295.3 +1 reviewed p.E4D 0.151 93 0% 108 29.6% 18 33.3% possibly_damaging(0.938) deleterious(0) deleterious(0.828) NULL ADAMTS12 81792 genome.wustl.edu 37 5 33549441 33549441 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030955.2 -1 reviewed p.C1391 0.982 77 0% 40 22.5% 0 - - - - HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ADAMTS12 81792 genome.wustl.edu 37 5 33616101 33616101 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030955.2 -1 reviewed p.F740L 1.000 368 0% 129 24% 0 - possibly_damaging(0.694) deleterious(0.02) deleterious(0.632) HMMPfam_ADAM_spacer1 RXFP3 51289 genome.wustl.edu 37 5 33938066 33938066 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016568.3 +1 validated p.I407 0.913 35 0% 31 16.1% 0 - - - - superfamily_SSF81321 RAI14 26064 genome.wustl.edu 37 5 34824168 34824168 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145525.1 +1 validated p.R744W 1.000 220 0% 139 22.3% 49 40.8% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TTC23L 153657 genome.wustl.edu 37 5 34896883 34896883 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144725.3 +1 validated p.*362 0.003 194 0% 57 15.8% 0 - - - - NULL RAD1 5810 genome.wustl.edu 37 5 34913579 34913579 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002853.3 -1 reviewed p.M101I 0.746 172 0% 170 17.1% 11 45.4% benign(0) tolerated(0.23) neutral(0.042) superfamily_DNA clamp DNAJC21 134218 genome.wustl.edu 37 5 34937665 34937665 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194283.3 +1 validated p.E225* 1.000 88 0% 106 27.4% 14 7.1% - - - NULL SPEF2 79925 genome.wustl.edu 37 5 35704717 35704717 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024867.3 +1 validated p.N820 0.000 362 0% 154 23.4% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases IL7R 3575 genome.wustl.edu 37 5 35867627 35867627 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000511982 +1 known p.L147 0.010 116 0.9% 21 28.6% 0 - - - - NULL IL7R 3575 genome.wustl.edu 37 5 35876396 35876396 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002185.2 +1 reviewed p.N396 0.000 199 0% 112 17% 1 0% - - - NULL CAPSL 133690 genome.wustl.edu 37 5 35910605 35910605 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042625.1 -1 validated p.D60N 1.000 285 0% 224 19.2% 2 0% benign(0.014) tolerated(0.89) neutral(0.001) HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand UGT3A1 133688 genome.wustl.edu 37 5 35965553 35965553 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152404.3 -1 validated p.P260S 0.994 333 0% 169 18.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase SKP2 6502 genome.wustl.edu 37 5 36170448 36170448 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005983.2 +1 reviewed p.T225I 0.954 634 0% 204 24.5% 9 66.6% possibly_damaging(0.851) tolerated(0.28) neutral(0.359) HMMSmart_SM00367,superfamily_RNI-like NADKD1 133686 genome.wustl.edu 37 5 36195337 36195337 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502355 -1 known p.E108* 1.000 762 0% 273 25.3% 12 33.3% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL SLC1A3 6507 genome.wustl.edu 37 5 36677225 36677225 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004172.4 +1 reviewed p.L267M 0.995 487 0% 231 16.9% 3 0% probably_damaging(1) tolerated(0.34) deleterious(0.523) HMMPfam_SDF NIPBL 25836 genome.wustl.edu 37 5 36985963 36985963 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133433.3 +1 reviewed p.R894H 1.000 108 0% 71 28.2% 3 66.6% probably_damaging(0.972) deleterious(0) deleterious(0.859) superfamily_ARM repeat C5orf42 65250 genome.wustl.edu 37 5 37153878 37153878 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023073.3 -1 predicted p.F1623L 0.983 201 0% 139 23.7% 3 0% benign(0.282) tolerated(0.17) neutral(0.145) NULL C5orf42 65250 genome.wustl.edu 37 5 37221295 37221295 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399674 -1 known e15-1 0.009 12 0% 24 37.5% 0 - - - - - C5orf42 65250 genome.wustl.edu 37 5 37238988 37238988 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508244 -1 known p.K303N 1.000 199 0% 209 20.1% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL C5orf42 65250 genome.wustl.edu 37 5 37244687 37244687 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508244 -1 known p.L120 0.655 171 0% 190 25.3% 0 - - - - NULL NUP155 9631 genome.wustl.edu 37 5 37310816 37310816 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153485.1 -1 reviewed p.T822 0.998 213 0% 123 15.4% 9 11.1% - - - HMMPfam_Nucleoporin WDR70 55100 genome.wustl.edu 37 5 37727060 37727060 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018034.2 +1 provisional p.T597I 1.000 183 0% 55 30.9% 47 46.8% benign(0.044) tolerated(0.2) neutral(0.052) NULL EGFLAM 133584 genome.wustl.edu 37 5 38418224 38418224 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152403.2 +1 validated p.S517 0.824 256 0% 92 19.6% 2 0% - - - HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1 EGFLAM 133584 genome.wustl.edu 37 5 38451481 38451481 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152403.2 +1 validated p.L870 0.965 384 0% 276 20.7% 3 0% - - - HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 LIFR 3977 genome.wustl.edu 37 5 38523529 38523529 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127671.1 -1 reviewed p.V185I 0.017 277 0% 110 16.4% 0 - possibly_damaging(0.849) tolerated(0.34) neutral(0.349) NULL RICTOR 253260 genome.wustl.edu 37 5 39021230 39021230 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152756.3 -1 validated p.D36N 1.000 345 0% 236 22.5% 0 - benign(0.215) deleterious(0.01) neutral(0.427) superfamily_ARM repeat FYB 2533 genome.wustl.edu 37 5 39201985 39201985 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001465.3 -1 validated p.P360S 1.000 627 0% 279 24.7% 11 0% probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL FYB 2533 genome.wustl.edu 37 5 39202599 39202599 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001465.3 -1 validated p.S155Y 0.682 349 0% 194 25.8% 12 0% unknown(0) deleterious(0.02) - NULL C9 735 genome.wustl.edu 37 5 39311424 39311424 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001737.3 -1 reviewed p.R309I 1.000 440 0% 112 22.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MACPF,HMMSmart_MACPF C9 735 genome.wustl.edu 37 5 39315907 39315907 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001737.3 -1 reviewed p.Y280 0.003 311 0% 91 13.2% 0 - - - - HMMPfam_MACPF DAB2 1601 genome.wustl.edu 37 5 39377263 39377263 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001343.2 -1 validated p.Q542 0.964 112 0% 52 15.4% 17 0% - - - NULL DAB2 1601 genome.wustl.edu 37 5 39390578 39390578 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001343.2 -1 validated p.H144Y 1.000 184 0% 73 24.7% 9 0% possibly_damaging(0.935) tolerated(0.11) deleterious(0.652) HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like PTGER4 5734 genome.wustl.edu 37 5 40681528 40681528 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000958.2 +1 reviewed p.A145T 0.375 30 0% 39 41% 2 0% benign(0.007) tolerated(0.19) neutral(0.050) HMMPfam_7tm_1,superfamily_SSF81321 CARD6 84674 genome.wustl.edu 37 5 40843580 40843580 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032587.3 +1 reviewed p.D204N 1.000 122 0% 81 17.3% 0 - benign(0.025) deleterious(0) neutral(0.446) NULL CARD6 84674 genome.wustl.edu 37 5 40853667 40853667 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032587.3 +1 reviewed p.V745I 0.000 144 0% 33 12.1% 3 0% possibly_damaging(0.892) deleterious(0) deleterious(0.796) NULL HEATR7B2 133558 genome.wustl.edu 37 5 41004951 41004951 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173489.4 -1 validated p.A1312 0.999 283 0% 78 10.3% 0 - - - - superfamily_ARM repeat HEATR7B2 133558 genome.wustl.edu 37 5 41018843 41018843 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173489.4 -1 validated p.T875A 0.625 355 0% 132 22.7% 0 - benign(0.307) tolerated(0.51) neutral(0.104) superfamily_ARM repeat OXCT1 5019 genome.wustl.edu 37 5 41850134 41850134 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000436.3 -1 reviewed p.E188* 1.000 339 0% 79 21.5% 2 0% - - - HMMPfam_CoA_trans,superfamily_SSF100950 FBXO4 26272 genome.wustl.edu 37 5 41934123 41934123 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012176.2 +1 reviewed p.R241I 1.000 470 0% 459 26.6% 27 29.6% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL SEPP1 6414 genome.wustl.edu 37 5 42807075 42807075 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093726.1 -1 reviewed p.V143 0.995 435 0% 320 20.3% 27 37% - - - HMMPfam_SelP_N ANXA2R 389289 genome.wustl.edu 37 5 43039778 43039778 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014279.2 -1 validated p.S124I 0.000 159 0% 168 24.4% 25 24% benign(0.003) deleterious(0) neutral(0.445) NULL HMGCS1 3157 genome.wustl.edu 37 5 43295938 43295938 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098272.1 -1 validated p.S274F 1.000 362 0% 104 17.3% 18 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like HMGCS1 3157 genome.wustl.edu 37 5 43297114 43297114 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098272.1 -1 validated p.Q243 0.995 341 0% 116 21.6% 11 27.2% - - - HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like PAIP1 10605 genome.wustl.edu 37 5 43527543 43527543 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000514514 -1 known p.W348* 1.000 534 0% 614 17.9% 43 4.6% - - - NULL PAIP1 10605 genome.wustl.edu 37 5 43535703 43535703 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006451.4 -1 reviewed p.G338* 1.000 815 0% 615 19.3% 42 2.3% - - - HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat NNT 23530 genome.wustl.edu 37 5 43653190 43653190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012343.3 +1 reviewed p.R645H 1.000 194 0% 144 18.8% 27 59.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PNTB MRPS30 10884 genome.wustl.edu 37 5 44815294 44815294 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016640.3 +1 reviewed p.L437S 0.549 126 0% 106 28.3% 85 41.1% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL HCN1 348980 genome.wustl.edu 37 5 45645385 45645385 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021072.2 -1 validated p.A251S 1.000 148 0% 65 10.8% 0 - benign(0.149) tolerated(0.11) neutral(0.285) HMMPfam_Ion_trans,superfamily_SSF81324 EMB 133418 genome.wustl.edu 37 5 49699156 49699156 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198449.2 -1 reviewed p.E245K 0.997 365 0% 101 25.7% 15 6.6% benign(0.111) tolerated(0.66) neutral(0.011) HMMSmart_SM00409,superfamily_Immunoglobulin PARP8 79668 genome.wustl.edu 37 5 50091088 50091088 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024615.3 +1 validated p.G422E 0.991 184 0% 128 26.6% 18 44.4% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PARP8 79668 genome.wustl.edu 37 5 50091162 50091162 + Nonsense_Mutation SNP G G T rs182814465 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024615.3 +1 validated p.E447* 1.000 159 0% 113 23% 28 14.2% - - - NULL ITGA1 3672 genome.wustl.edu 37 5 52206122 52206122 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181501.1 +1 reviewed p.A577V 1.000 172 0% 97 21.6% 3 0% probably_damaging(0.955) tolerated(0.09) deleterious(0.695) HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318 FST 10468 genome.wustl.edu 37 5 52779410 52779410 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013409.1 +1 reviewed p.C118 0.930 194 0% 168 28.6% 0 - - - - HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors MIR581 693166 genome.wustl.edu 37 5 53247414 53247414 + RNA SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000384895 -1 known NULL 0.000 163 0% 55 25.5% 0 - - - - - ARL15 54622 genome.wustl.edu 37 5 53450419 53450419 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019087.2 -1 validated p.E82K 1.000 212 0% 128 15.6% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Arf,superfamily_SSF52540 SNX18 112574 genome.wustl.edu 37 5 53814861 53814861 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052870.2 +1 reviewed p.M360T 1.000 29 0% 29 24.1% 5 40% probably_damaging(0.959) deleterious(0.01) deleterious(0.808) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain GZMK 3003 genome.wustl.edu 37 5 54320601 54320601 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002104.2 +1 reviewed p.Q60* 0.466 86 0% 45 28.9% 42 0% - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases CCNO 10309 genome.wustl.edu 37 5 54527311 54527311 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021147.3 -1 validated p.D315 1.000 62 0% 72 18.1% 43 55.8% - - - HMMSmart_SM00385,superfamily_Cyclin-like LOC100288375 100288375 genome.wustl.edu 37 5 54528231 54528231 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342533.1 +1 model p.E39* 1.000 69 0% 86 10.5% 60 8.3% probably_damaging(0.999) tolerated(1) deleterious(0.490) NULL SKIV2L2 23517 genome.wustl.edu 37 5 54649009 54649009 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015360.4 +1 validated p.T482M 1.000 201 0% 62 24.2% 15 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 PPAP2A 8611 genome.wustl.edu 37 5 54786889 54786889 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176895.1 -1 reviewed p.G38C 1.000 232 0% 74 16.2% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase IL31RA 133396 genome.wustl.edu 37 5 55178965 55178965 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139017.4 +1 validated p.P183L 0.002 378 0% 169 18.3% 1 0% possibly_damaging(0.811) tolerated(0.08) deleterious(0.605) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like ANKRD55 79722 genome.wustl.edu 37 5 55407499 55407499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024669.2 -1 validated p.R359K 0.427 425 0% 230 21.7% 0 - benign(0.001) tolerated(1) - NULL MAP3K1 4214 genome.wustl.edu 37 5 56176590 56176590 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005921.1 +1 validated p.A714T 1.000 365 0% 147 15% 9 33.3% benign(0) tolerated(0.19) neutral(0.050) NULL MAP3K1 4214 genome.wustl.edu 37 5 56179442 56179442 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005921.1 +1 validated p.G1252E 1.000 472 0% 161 22.4% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase GPBP1 65056 genome.wustl.edu 37 5 56542200 56542200 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127235.2 +1 validated p.Q204H 1.000 242 0% 164 17.1% 54 46.2% possibly_damaging(0.91) tolerated(0.13) deleterious(0.615) NULL GAPT 202309 genome.wustl.edu 37 5 57790631 57790631 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152687.2 +1 provisional p.H90Y 0.000 184 0% 60 20% 1 0% possibly_damaging(0.846) deleterious(0) deleterious(0.770) NULL GAPT 202309 genome.wustl.edu 37 5 57790782 57790782 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152687.2 +1 provisional p.R140H 0.000 66 1.5% 20 35% 0 - benign(0) tolerated(0.12) neutral(0.261) NULL PDE4D 5144 genome.wustl.edu 37 5 58287699 58287699 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001104631.1 -1 validated p.R383M 1.000 418 0.2% 165 23.6% 0 - benign(0.028) tolerated(0.07) neutral(0.321) superfamily_HD-domain/PDEase-like PDE4D 5144 genome.wustl.edu 37 5 59284472 59284472 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502484 -1 known p.R39W 0.883 342 0.3% 91 24.2% 1 100% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL DEPDC1B 55789 genome.wustl.edu 37 5 59940620 59940620 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018369.2 -1 validated p.V221I 0.887 355 0% 162 18.5% 5 0% benign(0.004) tolerated(0.6) neutral(0.004) superfamily_GTPase activation domain GAP NDUFAF2 91942 genome.wustl.edu 37 5 60448575 60448575 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174889.4 +1 reviewed p.K101N 0.995 55 0% 57 12.3% 68 33.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_NDUFA12 ZSWIM6 57688 genome.wustl.edu 37 5 60839364 60839364 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020928.1 +1 provisional p.T956 0.570 121 0% 42 16.7% 7 57.1% - - - NULL HTR1A 3350 genome.wustl.edu 37 5 63256621 63256621 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000524.2 -1 validated p.S309I 1.000 37 0% 43 18.6% 0 - benign(0.121) tolerated(0.2) neutral(0.059) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like RNF180 285671 genome.wustl.edu 37 5 63509662 63509662 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113561.1 +1 validated p.R170Q 0.975 134 0% 71 16.9% 0 - benign(0.001) tolerated(0.47) neutral(0.011) NULL CWC27 10283 genome.wustl.edu 37 5 64079759 64079759 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005869.2 +1 validated p.L117M 0.037 202 0% 114 22.8% 39 43.5% probably_damaging(0.992) tolerated(0.13) deleterious(0.700) HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like ERBB2IP 55914 genome.wustl.edu 37 5 65349668 65349668 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018695.2 +1 reviewed p.S841N 0.001 108 0% 27 29.6% 18 38.8% benign(0.007) deleterious(0.01) neutral(0.406) NULL SREK1 140890 genome.wustl.edu 37 5 65466736 65466736 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077199.1 +1 validated p.R482M 1.000 276 0% 66 22.7% 12 33.3% - - - superfamily_SSF54928 MAST4 375449 genome.wustl.edu 37 5 66459541 66459541 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015183.2 +1 validated p.R1323C 1.000 28 0% 22 18.2% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MAST4 375449 genome.wustl.edu 37 5 66460008 66460008 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000443808 +1 known p.L724I 0.000 30 0% 42 16.7% 1 0% - - - NULL MAST4 375449 genome.wustl.edu 37 5 66460565 66460565 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015183.2 +1 validated p.T1664I 0.000 123 0% 166 22.3% 2 0% benign(0.006) deleterious(0) neutral(0.445) NULL MAST4 375449 genome.wustl.edu 37 5 66461336 66461336 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015183.2 +1 validated p.S1921Y 0.060 56 0% 60 33.3% 5 20% possibly_damaging(0.887) deleterious(0) deleterious(0.791) NULL CD180 4064 genome.wustl.edu 37 5 66478967 66478967 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005582.2 -1 validated p.Q568H 1.000 254 0% 95 15.8% 12 0% benign(0.002) tolerated(0.28) neutral(0.032) superfamily_L domain-like PIK3R1 5295 genome.wustl.edu 37 5 67588951 67588951 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181523.1 +1 reviewed p.R348* 1.000 344 0% 332 46.4% 4 75% - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain SLC30A5 64924 genome.wustl.edu 37 5 68419214 68419214 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022902.2 +1 provisional p.P654S 1.000 248 0% 169 21.3% 47 46.8% benign(0.418) deleterious(0.04) deleterious(0.484) HMMPfam_Cation_efflux CCNB1 891 genome.wustl.edu 37 5 68471358 68471358 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031966.2 +1 reviewed p.G359 1.000 316 0% 270 23% 321 48.2% - - - HMMPfam_Cyclin_C,HMMSmart_CYCLIN,superfamily_Cyclin_like CDK7 1022 genome.wustl.edu 37 5 68572518 68572518 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001799.3 +1 validated e11+1 1.000 202 0% 120 30% 13 100% - - - - RAD17 5884 genome.wustl.edu 37 5 68687730 68687730 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133339.1 +1 reviewed p.R371Q 0.682 117 0.9% 114 20.2% 8 75% benign(0.001) tolerated(0.48) neutral(0.011) HMMPfam_Rad17 MARVELD2 153562 genome.wustl.edu 37 5 68715620 68715620 + Silent SNP C C A rs34291091 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001038603.2 +1 validated p.P136 0.000 117 0% 116 19.8% 6 83.3% - - - NULL GTF2H2D 730394 genome.wustl.edu 37 5 68874889 68874889 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042490.3 +1 provisional p.L201 1.000 339 0% 210 16.7% 17 29.4% - - - HMMSmart_SM00327,HMMPfam_Ssl1,superfamily_vWA-like BDP1 55814 genome.wustl.edu 37 5 70782445 70782445 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018429.2 +1 reviewed p.N402Y 0.960 178 0% 109 14.7% 1 0% probably_damaging(0.983) deleterious(0.02) deleterious(0.812) NULL BDP1 55814 genome.wustl.edu 37 5 70818603 70818603 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018429.2 +1 reviewed p.T1738 0.002 168 0% 214 23.4% 1 0% - - - NULL MAP1B 4131 genome.wustl.edu 37 5 71491521 71491521 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005909.3 +1 validated p.G780V 0.982 61 0% 30 26.7% 0 - unknown(0) deleterious(0.03) - NULL MAP1B 4131 genome.wustl.edu 37 5 71493590 71493590 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005909.3 +1 validated p.E1470* 1.000 164 0% 74 16.2% 0 - - - - NULL MAP1B 4131 genome.wustl.edu 37 5 71494131 71494131 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005909.3 +1 validated p.G1650D 1.000 230 0% 101 17.8% 0 - unknown(0) deleterious(0.02) - NULL MAP1B 4131 genome.wustl.edu 37 5 71495575 71495575 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005909.3 +1 validated p.P2131 0.861 94 1.1% 57 17.5% 0 - - - - NULL MAP1B 4131 genome.wustl.edu 37 5 71495815 71495815 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005909.3 +1 validated p.S2211 0.902 108 0% 47 21.3% 1 0% - - - NULL MAP1B 4131 genome.wustl.edu 37 5 71496127 71496127 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005909.3 +1 validated p.E2315 1.000 205 0% 60 21.7% 0 - - - - NULL MRPS27 23107 genome.wustl.edu 37 5 71528354 71528354 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015084.2 -1 reviewed p.M169I 0.998 289 0% 58 29.3% 31 38.7% benign(0.001) deleterious(0.03) neutral(0.364) HMMPfam_MRP-S27 ZNF366 167465 genome.wustl.edu 37 5 71752337 71752337 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152625.1 -1 provisional p.N473T 1.000 398 0.3% 310 20% 0 - possibly_damaging(0.773) deleterious(0.02) deleterious(0.670) superfamily_C2H2 and C2HC zinc fingers ZNF366 167465 genome.wustl.edu 37 5 71756435 71756435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152625.1 -1 provisional p.H297Y 1.000 67 0% 70 25.7% 0 - possibly_damaging(0.948) tolerated(0.22) neutral(0.433) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TNPO1 3842 genome.wustl.edu 37 5 72178958 72178958 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002270.3 +1 reviewed p.S350L 1.000 205 0% 94 17% 22 31.8% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) superfamily_ARM repeat TNPO1 3842 genome.wustl.edu 37 5 72192302 72192302 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002270.3 +1 reviewed p.L721 1.000 262 0% 86 20.9% 27 48.1% - - - superfamily_ARM repeat TNPO1 3842 genome.wustl.edu 37 5 72201175 72201175 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002270.3 +1 reviewed p.R879C 1.000 507 0% 198 19.2% 13 38.4% possibly_damaging(0.781) deleterious(0.05) deleterious(0.638) superfamily_ARM repeat RGNEF 64283 genome.wustl.edu 37 5 73048987 73048987 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080479.2 +1 reviewed p.L145F 1.000 112 0% 70 12.9% 1 100% possibly_damaging(0.938) deleterious(0) deleterious(0.828) NULL RGNEF 64283 genome.wustl.edu 37 5 73069713 73069713 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080479.2 +1 reviewed p.A170D 0.523 318 0% 141 24.1% 0 - probably_damaging(0.96) deleterious(0) deleterious(0.848) NULL RGNEF 64283 genome.wustl.edu 37 5 73181735 73181735 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080479.2 +1 reviewed p.A1039V 1.000 212 0% 104 25% 4 0% probably_damaging(0.991) tolerated(0.16) deleterious(0.504) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) RGNEF 64283 genome.wustl.edu 37 5 73189114 73189114 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080479.2 +1 reviewed e27+1 1.000 272 0% 145 24.1% 1 0% - - - - ENC1 8507 genome.wustl.edu 37 5 73930855 73930855 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003633.2 -1 validated p.A486S 0.998 55 0% 56 26.8% 15 33.3% benign(0.048) tolerated(0.36) neutral(0.023) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain FAM169A 26049 genome.wustl.edu 37 5 74091944 74091944 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015566.1 -1 validated p.G391W 0.699 623 0% 483 17% 1 100% possibly_damaging(0.626) deleterious(0.03) deleterious(0.583) NULL ANKRD31 256006 genome.wustl.edu 37 5 74491503 74491503 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000274361 -1 known p.E324K 0.001 420 0.2% 112 23.2% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL POLK 51426 genome.wustl.edu 37 5 74892378 74892378 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016218.2 +1 validated p.Q620H 0.391 150 0% 66 19.7% 14 21.4% unknown(0) deleterious(0) - NULL POLK 51426 genome.wustl.edu 37 5 74892932 74892932 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016218.2 +1 validated p.S805N 0.625 181 0% 107 22.4% 10 70% unknown(0) deleterious(0) - NULL SV2C 22987 genome.wustl.edu 37 5 75490838 75490838 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014979.1 +1 provisional p.M225I 1.000 920 0.1% 528 22% 0 - benign(0.406) deleterious(0.02) deleterious(0.514) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter IQGAP2 10788 genome.wustl.edu 37 5 75932870 75932870 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006633.2 +1 validated p.G598S 0.999 490 0% 160 19.4% 2 50% benign(0.002) tolerated(1) - NULL IQGAP2 10788 genome.wustl.edu 37 5 75936928 75936928 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006633.2 +1 validated p.Q698H 1.000 162 0% 52 17.3% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases IQGAP2 10788 genome.wustl.edu 37 5 75998377 75998377 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006633.2 +1 validated p.L1526I 1.000 593 0% 315 26.3% 25 36% probably_damaging(0.989) tolerated(0.15) deleterious(0.680) NULL F2R 2149 genome.wustl.edu 37 5 76028608 76028608 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001992.3 +1 reviewed p.M186I 1.000 203 0% 111 27.9% 13 15.3% possibly_damaging(0.749) deleterious(0) deleterious(0.720) HMMPfam_7tm_1,superfamily_SSF81321 LOC100287744 100287744 genome.wustl.edu 37 5 76128606 76128606 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342529.1 -1 model p.D170Y 0.103 376 0% 181 13.3% 5 0% - - - NULL CRHBP 1393 genome.wustl.edu 37 5 76251570 76251570 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001882.3 +1 reviewed p.E142 0.979 230 0% 228 20.6% 0 - - - - superfamily_Spermadhesin CUB domain,HMMPfam_CRF-BP PDE8B 8622 genome.wustl.edu 37 5 76649185 76649185 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003719.2 +1 validated p.F374C 1.000 443 0% 151 26.5% 0 - benign(0.027) tolerated(0.13) neutral(0.254) HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain) AP3B1 8546 genome.wustl.edu 37 5 77523196 77523196 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003664.3 -1 reviewed p.S179N 1.000 315 0% 124 23.4% 8 0% benign(0.176) deleterious(0.04) neutral(0.365) HMMPfam_Adaptin_N,superfamily_ARM repeat SCAMP1 9522 genome.wustl.edu 37 5 77684700 77684700 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000509998 +1 known p.G33R 1.000 209 0% 399 20.3% 13 69.2% - - - NULL BHMT2 23743 genome.wustl.edu 37 5 78379054 78379054 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017614.4 +1 reviewed p.D213G 0.000 99 0% 85 20% 0 - benign(0.016) tolerated(0.35) neutral(0.021) HMMPfam_S-methyl_trans,superfamily_S_methyl_trans JMY 133746 genome.wustl.edu 37 5 78573877 78573877 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152405.4 +1 validated p.L393I 1.000 160 0% 83 25.3% 3 33.3% possibly_damaging(0.88) deleterious(0.04) deleterious(0.692) NULL JMY 133746 genome.wustl.edu 37 5 78608310 78608310 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152405.4 +1 validated p.T685A 0.940 223 0% 91 18.7% 3 33.3% benign(0.081) tolerated(0.37) neutral(0.025) NULL CMYA5 202333 genome.wustl.edu 37 5 79025258 79025258 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153610.3 +1 validated p.T224A 1.000 139 0% 45 24.4% 0 - probably_damaging(0.971) deleterious(0) deleterious(0.857) NULL CMYA5 202333 genome.wustl.edu 37 5 79027746 79027746 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153610.3 +1 validated p.P1053H 0.036 123 0% 43 34.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL CMYA5 202333 genome.wustl.edu 37 5 79031112 79031112 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153610.3 +1 validated p.I2175T 1.000 78 0% 16 25% 0 - benign(0.042) deleterious(0) neutral(0.447) NULL THBS4 7060 genome.wustl.edu 37 5 79366161 79366161 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003248.4 +1 reviewed p.I460 0.998 212 0% 144 23.6% 5 20% - - - HMMSmart_EGF,PatternScan_EGF_2 THBS4 7060 genome.wustl.edu 37 5 79366562 79366562 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003248.4 +1 reviewed p.L517M 0.101 130 0% 104 28.8% 6 0% benign(0.245) tolerated(0.13) neutral(0.278) HMMPfam_TSP_3,superfamily_SSF103647 THBS4 7060 genome.wustl.edu 37 5 79369116 79369116 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003248.4 +1 reviewed p.L620 1.000 313 0% 180 26.1% 11 9% - - - HMMPfam_TSP_3,superfamily_SSF103647 SPZ1 84654 genome.wustl.edu 37 5 79617289 79617289 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032567.3 +1 validated p.L419I 0.022 73 0% 64 23.4% 0 - probably_damaging(0.996) tolerated(0.3) deleterious(0.490) NULL RASGRF2 5924 genome.wustl.edu 37 5 80508286 80508286 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006909.1 +1 validated p.C1086 1.000 128 0% 46 28.3% 2 0% - - - HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF RASGRF2 5924 genome.wustl.edu 37 5 80521539 80521539 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006909.1 +1 validated p.D1222Y 1.000 282 0% 154 29.9% 1 0% possibly_damaging(0.872) deleterious(0) deleterious(0.784) HMMSmart_SM00147,superfamily_Ras GEF ZCCHC9 84240 genome.wustl.edu 37 5 80600941 80600941 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001131035.1 +1 validated p.A122V 0.306 96 0% 99 23.2% 27 29.6% benign(0.055) tolerated(0.29) neutral(0.033) superfamily_Retrovirus zinc finger-like domains ACOT12 134526 genome.wustl.edu 37 5 80640015 80640015 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130767.2 -1 validated p.R315Q 0.173 149 0% 104 15.4% 0 - benign(0.012) tolerated(0.83) neutral(0.001) superfamily_Thioesterase/thiol ester dehydrase-isomerase ACOT12 134526 genome.wustl.edu 37 5 80643593 80643593 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130767.2 -1 validated p.S218I 1.000 150 0% 59 28.8% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase SSBP2 23635 genome.wustl.edu 37 5 80736402 80736402 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012446.2 -1 validated p.E301D 1.000 300 0% 322 11.2% 27 18.5% benign(0.059) tolerated(0.19) neutral(0.054) NULL XRCC4 7518 genome.wustl.edu 37 5 82406986 82406986 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022406.2 +1 reviewed p.C93 0.765 305 0% 214 21% 7 28.5% - - - superfamily_XRCC4 N-terminal domain,HMMPfam_XRCC4 VCAN 1462 genome.wustl.edu 37 5 82786060 82786060 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.D72N 1.000 150 0% 46 19.6% 0 - possibly_damaging(0.671) tolerated(0.06) deleterious(0.560) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin VCAN 1462 genome.wustl.edu 37 5 82815656 82815656 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.K511E 0.601 250 0% 132 22% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) NULL VCAN 1462 genome.wustl.edu 37 5 82816982 82816982 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.A953S 0.027 162 0% 81 18.5% 2 0% benign(0.039) tolerated(0.05) neutral(0.347) NULL VCAN 1462 genome.wustl.edu 37 5 82833114 82833114 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.R1431H 1.000 86 0% 27 29.6% 0 - probably_damaging(1) - - NULL VCAN 1462 genome.wustl.edu 37 5 82833247 82833247 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.E1475D 0.007 147 0% 47 19.1% 0 - probably_damaging(0.985) - - NULL VCAN 1462 genome.wustl.edu 37 5 82834425 82834425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.G1868D 0.009 124 0% 36 13.9% 1 0% probably_damaging(1) - - NULL VCAN 1462 genome.wustl.edu 37 5 82838073 82838073 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.A3084E 1.000 316 0% 71 15.5% 7 0% probably_damaging(0.997) - - NULL VCAN 1462 genome.wustl.edu 37 5 82876131 82876131 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004385.4 +1 reviewed p.A3357T 1.000 271 0% 73 19.2% 16 6.2% possibly_damaging(0.842) tolerated(1) neutral(0.322) NULL NBPF22P 285622 genome.wustl.edu 37 5 85578762 85578762 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000380134 +1 known NULL 0.463 652 0% 159 24.5% 0 - - - - - RASA1 5921 genome.wustl.edu 37 5 86633867 86633867 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002890.1 +1 reviewed p.D326Y 1.000 496 0% 110 25.5% 4 25% possibly_damaging(0.932) deleterious(0) deleterious(0.823) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain RASA1 5921 genome.wustl.edu 37 5 86681180 86681180 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002890.1 +1 reviewed p.A941S 1.000 386 0% 109 19.3% 18 44.4% possibly_damaging(0.838) deleterious(0) deleterious(0.764) HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP TMEM161B 153396 genome.wustl.edu 37 5 87536683 87536683 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153354.3 -1 provisional p.M18I 1.000 203 0% 72 29.2% 6 50% benign(0) tolerated(0.99) - HMMPfam_Tmemb_161AB MEF2C 4208 genome.wustl.edu 37 5 88047683 88047683 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002397.3 -1 validated p.G194C 1.000 320 0% 196 22.4% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CETN3 1070 genome.wustl.edu 37 5 89695262 89695262 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004365.2 -1 reviewed p.R125C 1.000 589 0% 356 18% 49 48.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473 GPR98 84059 genome.wustl.edu 37 5 89913743 89913743 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032119.3 +1 reviewed p.E110D 1.000 310 0% 126 20.6% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMSmart_SM00237 GPR98 84059 genome.wustl.edu 37 5 89923523 89923523 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032119.3 +1 reviewed p.Y390H 0.931 133 0% 75 14.7% 0 - benign(0.002) tolerated(0.49) neutral(0.011) NULL GPR98 84059 genome.wustl.edu 37 5 89990146 89990146 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032119.3 +1 reviewed p.S2525P 0.994 317 0% 115 25.2% 1 0% benign(0.001) tolerated(0.73) neutral(0.002) NULL GPR98 84059 genome.wustl.edu 37 5 90087023 90087023 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032119.3 +1 reviewed p.T4793S 0.012 321 0% 69 21.7% 0 - benign(0.228) tolerated(0.35) neutral(0.043) NULL GPR98 84059 genome.wustl.edu 37 5 90261339 90261339 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032119.3 +1 reviewed p.M5988I 1.000 299 0% 200 21.5% 0 - possibly_damaging(0.865) deleterious(0.04) deleterious(0.684) NULL GPR98 84059 genome.wustl.edu 37 5 90368279 90368279 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032119.3 +1 reviewed p.N6056 0.993 618 0% 201 16.4% 0 - - - - NULL KIAA0825 285600 genome.wustl.edu 37 5 93489755 93489755 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145678.1 -1 validated p.T1262I 0.153 1209 0% 1056 19.6% 0 - possibly_damaging(0.919) deleterious(0) deleterious(0.814) NULL KIAA0825 285600 genome.wustl.edu 37 5 93732010 93732010 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145678.1 -1 validated p.T1031I 1.000 235 0% 82 29.3% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ANKRD32 84250 genome.wustl.edu 37 5 94030537 94030537 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032290.3 +1 validated p.G899 1.000 260 0% 124 24.2% 15 40% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK MCTP1 79772 genome.wustl.edu 37 5 94206652 94206652 + Silent SNP G G A rs137979343 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024717.4 -1 validated p.Y722 1.000 433 0% 101 13.9% 2 0% - - - HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) MCTP1 79772 genome.wustl.edu 37 5 94248638 94248638 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024717.4 -1 validated p.S465L 1.000 357 0.6% 106 19.8% 0 - benign(0.11) deleterious(0.01) neutral(0.414) superfamily_C2 domain (Calcium/lipid-binding domain CaLB) FAM81B 153643 genome.wustl.edu 37 5 94756051 94756051 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152548.2 +1 validated p.E201K 1.000 204 0% 103 21.4% 9 11.1% benign(0.026) tolerated(0.52) neutral(0.010) NULL FAM81B 153643 genome.wustl.edu 37 5 94772588 94772588 + Missense_Mutation SNP G G A rs148381850 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152548.2 +1 validated p.E291K 0.995 174 0% 66 16.7% 6 33.3% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) NULL TTC37 9652 genome.wustl.edu 37 5 94877552 94877552 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014639.2 -1 provisional p.G98D 0.975 319 0% 314 21.3% 6 50% benign(0.002) tolerated(0.75) neutral(0.002) superfamily_SSF48452 ARSK 153642 genome.wustl.edu 37 5 94918775 94918775 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198150.2 +1 validated p.A191V 0.914 265 0% 135 18.5% 2 0% possibly_damaging(0.869) deleterious(0.01) deleterious(0.743) HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core ARSK 153642 genome.wustl.edu 37 5 94939059 94939059 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198150.2 +1 validated p.V480 1.000 104 0% 55 18.2% 4 100% - - - NULL RHOBTB3 22836 genome.wustl.edu 37 5 95116114 95116114 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014899.3 +1 validated p.D481N 1.000 222 0% 110 19.1% 1 0% probably_damaging(0.998) tolerated(0.08) deleterious(0.774) HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB ELL2 22936 genome.wustl.edu 37 5 95234447 95234447 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012081.5 -1 validated p.T341M 0.999 155 0% 109 23.9% 10 10% probably_damaging(0.986) tolerated(0.09) deleterious(0.731) NULL ELL2 22936 genome.wustl.edu 37 5 95242453 95242453 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012081.5 -1 validated p.A172V 0.909 425 0% 100 15% 3 33.3% benign(0.001) deleterious(0.02) neutral(0.383) HMMPfam_ELL PCSK1 5122 genome.wustl.edu 37 5 95761522 95761522 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000439.4 -1 reviewed e3+2 1.000 373 0% 243 10.7% 0 - - - - - CAST 831 genome.wustl.edu 37 5 96093315 96093315 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001750.5 +1 reviewed p.A597V 1.000 468 0% 200 25.5% 61 34.4% possibly_damaging(0.882) tolerated(0.06) deleterious(0.667) HMMPfam_Calpain_inhib ERAP1 51752 genome.wustl.edu 37 5 96139106 96139106 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016442.3 -1 validated p.R175K 1.000 111 0% 119 18.5% 10 30% probably_damaging(1) tolerated(0.21) deleterious(0.544) HMMPfam_Peptidase_M1,superfamily_SSF63737 ERAP2 64167 genome.wustl.edu 37 5 96239149 96239149 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130140.1 +1 validated p.V633I 0.998 365 0% 137 21.9% 46 73.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL LNPEP 4012 genome.wustl.edu 37 5 96315350 96315350 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005575.2 +1 reviewed p.R176 0.738 220 0% 48 22.9% 5 0% - - - HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain LIX1 167410 genome.wustl.edu 37 5 96460290 96460290 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153234.4 -1 validated p.Q42H 1.000 195 0% 46 13% 0 - possibly_damaging(0.66) deleterious(0.01) deleterious(0.639) NULL RIOK2 55781 genome.wustl.edu 37 5 96504510 96504510 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018343.2 -1 validated p.R276C 1.000 218 0% 95 18.9% 10 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RIO1 CHD1 1105 genome.wustl.edu 37 5 98192370 98192370 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001270.2 -1 reviewed p.R1616M 1.000 363 0% 300 22% 39 48.7% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL CHD1 1105 genome.wustl.edu 37 5 98215376 98215376 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001270.2 -1 reviewed p.N1039K 1.000 458 0% 356 14.6% 11 9% benign(0.124) tolerated(0.31) neutral(0.037) NULL CHD1 1105 genome.wustl.edu 37 5 98239613 98239613 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001270.2 -1 reviewed e3-1 1.000 240 0% 142 23.9% 0 - - - - - ST8SIA4 7903 genome.wustl.edu 37 5 100147586 100147586 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005668.4 -1 reviewed p.L349 1.000 663 0% 389 20.3% 9 11.1% - - - HMMPfam_Glyco_transf_29 SLCO4C1 353189 genome.wustl.edu 37 5 101575093 101575093 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_180991.4 -1 validated e12-1 1.000 208 0% 77 31.2% 0 - - - - - SLCO4C1 353189 genome.wustl.edu 37 5 101599457 101599457 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_180991.4 -1 validated p.G277D 1.000 245 0% 98 19.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter SLCO4C1 353189 genome.wustl.edu 37 5 101606376 101606376 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_180991.4 -1 validated p.A252S 1.000 152 0% 49 22.4% 0 - benign(0.338) tolerated(0.13) neutral(0.359) HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter SLCO4C1 353189 genome.wustl.edu 37 5 101606511 101606511 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_180991.4 -1 validated e3-1 1.000 129 0% 42 23.8% 0 - - - - - SLCO4C1 353189 genome.wustl.edu 37 5 101631702 101631702 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_180991.4 -1 validated p.G89S 1.000 133 0% 225 26.7% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL SLCO6A1 133482 genome.wustl.edu 37 5 101774336 101774336 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173488.3 -1 validated p.A421T 0.181 104 0% 41 9.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_OATP,superfamily_MFS general substrate transporter NUDT12 83594 genome.wustl.edu 37 5 102890459 102890459 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031438.2 -1 validated p.A354T 1.000 124 0% 115 24.3% 15 26.6% probably_damaging(0.99) deleterious(0.03) deleterious(0.806) HMMPfam_NUDIX,superfamily_Nudix FER 2241 genome.wustl.edu 37 5 108207101 108207101 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005246.2 +1 reviewed p.S234N 1.000 224 0% 75 14.7% 3 33.3% probably_damaging(1) tolerated(0.29) deleterious(0.529) NULL FER 2241 genome.wustl.edu 37 5 108290508 108290508 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005246.2 +1 reviewed p.A470S 1.000 292 0% 70 22.9% 1 0% benign(0.047) deleterious(0.02) neutral(0.386) HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain PJA2 9867 genome.wustl.edu 37 5 108714327 108714327 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014819.4 -1 validated p.A287 0.004 507 0% 205 25.9% 14 35.7% - - - NULL MAN2A1 4124 genome.wustl.edu 37 5 109106195 109106195 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002372.2 +1 reviewed p.P383 1.000 230 0% 53 13.2% 2 50% - - - HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl MAN2A1 4124 genome.wustl.edu 37 5 109155562 109155562 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002372.2 +1 reviewed p.R768W 0.000 110 0% 70 25.7% 7 42.8% benign(0) deleterious(0.03) neutral(0.364) superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C MAN2A1 4124 genome.wustl.edu 37 5 109178108 109178108 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002372.2 +1 reviewed p.I882M 1.000 194 0% 140 22.9% 6 16.6% possibly_damaging(0.494) deleterious(0.03) deleterious(0.529) superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C SLC25A46 91137 genome.wustl.edu 37 5 110075036 110075036 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000509442 +1 known e1-1 0.242 21 0% 35 17.1% 6 33.3% - - - - WDR36 134430 genome.wustl.edu 37 5 110441782 110441782 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139281.2 +1 reviewed p.R430C 1.000 301 0.7% 104 20.2% 6 83.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_WD40_like WDR36 134430 genome.wustl.edu 37 5 110443080 110443080 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139281.2 +1 reviewed p.T479I 1.000 218 0% 69 15.9% 6 0% probably_damaging(0.984) tolerated(0.19) deleterious(0.480) superfamily_WD40_like STARD4 134429 genome.wustl.edu 37 5 110836711 110836711 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139164.1 -1 provisional p.L129P 1.000 261 0% 218 14.2% 4 75% probably_damaging(1) tolerated(0.12) deleterious(0.760) HMMPfam_START,superfamily_SSF55961 STARD4 134429 genome.wustl.edu 37 5 110843044 110843044 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139164.1 -1 provisional p.R30* 0.978 647 0% 524 22.1% 1 0% - - - HMMPfam_START,superfamily_SSF55961 APC 324 genome.wustl.edu 37 5 112177901 112177901 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000038.4 +1 reviewed p.R2204* 0.999 127 0% 69 20.3% 3 33.3% - - - NULL APC 324 genome.wustl.edu 37 5 112178827 112178827 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000038.4 +1 reviewed p.S2512R 0.998 138 0% 48 31.2% 11 36.3% benign(0.159) tolerated(0.15) neutral(0.255) HMMPfam_APC_basic ZRSR1 7310 genome.wustl.edu 37 5 112227360 112227360 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000391338 +1 known p.T8 0.002 152 0% 125 21.6% 2 50% - - - NULL ZRSR1 7310 genome.wustl.edu 37 5 112227868 112227868 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000391338 +1 known p.P178S 1.000 696 0% 475 23.2% 6 0% possibly_damaging(0.744) deleterious(0.03) deleterious(0.637) HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1 ZRSR1 7310 genome.wustl.edu 37 5 112228397 112228397 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000391338 +1 known p.S354Y 1.000 185 0% 136 25.7% 1 0% probably_damaging(0.992) tolerated(0.07) deleterious(0.766) NULL MCC 4163 genome.wustl.edu 37 5 112399837 112399837 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085377.1 -1 reviewed p.T686N 1.000 81 0% 45 26.7% 1 0% benign(0.013) tolerated(0.11) neutral(0.272) NULL MCC 4163 genome.wustl.edu 37 5 112406815 112406815 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085377.1 -1 reviewed p.A634V 0.996 315 0% 285 12.6% 0 - benign(0.05) tolerated(0.06) neutral(0.326) HMMPfam_MCC-bdg_PDZ YTHDC2 64848 genome.wustl.edu 37 5 112851020 112851020 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022828.3 +1 validated p.R80Q 1.000 472 0.2% 871 19.7% 0 - possibly_damaging(0.568) tolerated(0.51) neutral(0.204) HMMPfam_R3H,superfamily_SSF82708 YTHDC2 64848 genome.wustl.edu 37 5 112862360 112862360 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022828.3 +1 validated p.E185K 1.000 173 0% 125 27.2% 2 50% benign(0) tolerated(0.43) neutral(0.013) NULL KCNN2 3781 genome.wustl.edu 37 5 113831667 113831667 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021614.2 +1 reviewed p.L510 1.000 211 0.5% 45 11.1% 1 100% - - - NULL FEM1C 56929 genome.wustl.edu 37 5 114860309 114860309 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020177.2 -1 validated p.C517Y 1.000 350 0% 106 28.3% 14 42.8% possibly_damaging(0.929) deleterious(0) deleterious(0.821) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK TMED7 51014 genome.wustl.edu 37 5 114951979 114951979 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181836.5 -1 validated p.S201N 1.000 289 0% 290 20.3% 48 39.5% possibly_damaging(0.768) deleterious(0.04) deleterious(0.634) HMMPfam_EMP24_GP25L AP3S1 1176 genome.wustl.edu 37 5 115205761 115205761 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001284.2 +1 validated p.T70M 1.000 593 0% 252 12.3% 58 25.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like AQPEP 206338 genome.wustl.edu 37 5 115336134 115336134 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173800.4 +1 validated p.A507V 0.995 417 0% 324 21.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) "superfamily_Metalloproteases (""zincins"") catalytic domain" AQPEP 206338 genome.wustl.edu 37 5 115350225 115350225 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173800.4 +1 validated e16+1 0.999 303 0% 113 17.7% 0 - - - - - SEMA6A 57556 genome.wustl.edu 37 5 115783183 115783183 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020796.3 -1 validated p.K740R 1.000 129 0% 116 12.1% 7 42.8% benign(0.204) tolerated(0.53) neutral(0.027) NULL DTWD2 285605 genome.wustl.edu 37 5 118264291 118264291 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173666.2 -1 validated p.T180A 1.000 134 0% 47 17% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DTW DMXL1 1657 genome.wustl.edu 37 5 118574725 118574725 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005509.4 +1 validated p.F2846 1.000 358 0% 75 21.3% 8 0% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like TNFAIP8 25816 genome.wustl.edu 37 5 118728594 118728594 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014350.2 +1 validated p.A39T 1.000 162 0% 42 19% 9 0% probably_damaging(0.978) deleterious(0.01) deleterious(0.826) HMMPfam_DUF758 TNFAIP8 25816 genome.wustl.edu 37 5 118728896 118728896 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014350.2 +1 validated p.L139 0.012 223 0% 69 18.8% 12 33.3% - - - HMMPfam_DUF758 FTMT 94033 genome.wustl.edu 37 5 121188359 121188359 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177478.1 +1 validated p.T234I 0.999 140 0% 180 19.4% 0 - probably_damaging(0.973) deleterious(0) deleterious(0.859) superfamily_Ferritin/RR_like LOX 4015 genome.wustl.edu 37 5 121405775 121405775 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002317.5 -1 reviewed p.A407V 1.000 209 0% 144 18.8% 15 46.6% benign(0.006) tolerated(0.52) neutral(0.009) HMMPfam_Lysyl_oxidase ZNF474 133923 genome.wustl.edu 37 5 121488290 121488290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207317.1 +1 provisional p.S202F 0.001 184 0% 78 25.6% 3 33.3% possibly_damaging(0.92) deleterious(0.02) deleterious(0.754) NULL ZNF474 133923 genome.wustl.edu 37 5 121488579 121488579 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207317.1 +1 provisional p.R298 0.008 195 0% 77 18.2% 1 0% - - - NULL SNX2 6643 genome.wustl.edu 37 5 122110871 122110871 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003100.2 +1 reviewed p.E25K 1.000 43 0% 58 20.7% 46 43.4% possibly_damaging(0.653) deleterious(0.01) deleterious(0.635) HMMPfam_Sorting_nexin PRDM6 93166 genome.wustl.edu 37 5 122506476 122506476 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136239.1 +1 validated p.T390 0.990 100 0% 85 17.6% 2 50% - - - NULL ZNF608 57507 genome.wustl.edu 37 5 123983756 123983756 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020747.2 -1 validated p.T774I 0.989 390 0% 377 19.4% 2 100% probably_damaging(0.99) deleterious(0.03) deleterious(0.806) NULL GRAMD3 65983 genome.wustl.edu 37 5 125822592 125822592 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023927.2 +1 validated p.F362L 1.000 307 0% 71 16.9% 40 30% benign(0.043) tolerated(0.93) neutral(0.003) NULL MEGF10 84466 genome.wustl.edu 37 5 126774244 126774244 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032446.2 +1 validated p.L740I 1.000 113 0% 50 14% 0 - probably_damaging(0.995) tolerated(0.2) deleterious(0.507) HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin SLC12A2 6558 genome.wustl.edu 37 5 127503519 127503519 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001046.2 +1 validated p.A895T 1.000 444 0% 116 25% 6 33.3% benign(0.005) tolerated(0.16) neutral(0.059) NULL FBN2 2201 genome.wustl.edu 37 5 127595425 127595425 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001999.3 -1 reviewed p.L2821I 0.998 395 0% 132 15.9% 13 53.8% possibly_damaging(0.618) tolerated(0.17) neutral(0.274) NULL FBN2 2201 genome.wustl.edu 37 5 127610334 127610334 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001999.3 -1 reviewed p.L2546I 1.000 172 0% 58 13.8% 12 41.6% benign(0.184) tolerated(0.41) neutral(0.032) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA FBN2 2201 genome.wustl.edu 37 5 127637154 127637154 + Missense_Mutation SNP C C T rs189964478 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001999.3 -1 reviewed p.R1989H 0.993 350 0% 219 14.6% 1 0% benign(0.005) tolerated(0.33) neutral(0.024) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin FBN2 2201 genome.wustl.edu 37 5 127653922 127653922 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001999.3 -1 reviewed p.L1546I 0.169 352 0% 87 26.4% 1 0% benign(0.004) tolerated(0.41) neutral(0.015) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin FBN2 2201 genome.wustl.edu 37 5 127654578 127654578 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001999.3 -1 reviewed p.N1529 1.000 144 0% 39 20.5% 1 0% - - - HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,superfamily_EGF/Laminin SLC27A6 28965 genome.wustl.edu 37 5 128351750 128351750 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017372.1 +1 reviewed p.G381V 0.995 444 0% 225 16% 8 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AMP-binding,superfamily_SSF56801 SLC27A6 28965 genome.wustl.edu 37 5 128362859 128362859 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017372.1 +1 reviewed p.A430V 0.000 258 0% 94 18.1% 8 75% benign(0.025) tolerated(0.2) neutral(0.050) HMMPfam_AMP-binding,superfamily_SSF56801 ADAMTS19 171019 genome.wustl.edu 37 5 129001191 129001191 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133638.3 +1 reviewed e16-1 1.000 379 0% 138 25.4% 0 - - - - - ADAMTS19 171019 genome.wustl.edu 37 5 129030517 129030517 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133638.3 +1 reviewed p.R969* 1.000 309 0% 165 20.6% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat CHSY3 337876 genome.wustl.edu 37 5 129244016 129244016 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175856.4 +1 validated p.R350H 1.000 459 0.2% 493 17.6% 3 33.3% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_CHGN RAPGEF6 51735 genome.wustl.edu 37 5 130764613 130764613 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016340.5 -1 validated p.A1588T 0.997 250 0.4% 164 24.4% 8 37.5% benign(0.086) deleterious(0.01) neutral(0.412) NULL RAPGEF6 51735 genome.wustl.edu 37 5 130970666 130970666 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016340.5 -1 validated p.R20W 1.000 85 0% 71 15.5% 1 100% probably_damaging(0.99) deleterious(0) deleterious(0.886) superfamily_cAMP-binding domain-like ACSL6 23305 genome.wustl.edu 37 5 131290004 131290004 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009185.1 -1 validated p.T698S 1.000 455 0% 296 25.7% 1 0% possibly_damaging(0.934) deleterious(0) deleterious(0.825) superfamily_SSF56801 ACSL6 23305 genome.wustl.edu 37 5 131326566 131326566 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009185.1 -1 validated p.R122H 1.000 114 0% 87 17.2% 0 - benign(0.006) tolerated(0.19) neutral(0.050) superfamily_SSF56801 RAD50 10111 genome.wustl.edu 37 5 131939624 131939624 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005732.3 +1 reviewed p.D804Y 1.000 183 0% 56 28.6% 16 62.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases RAD50 10111 genome.wustl.edu 37 5 131953817 131953817 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005732.3 +1 reviewed p.A1074T 1.000 303 0% 146 28.8% 14 64.2% probably_damaging(0.998) tolerated(0.2) deleterious(0.523) HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF3A 11127 genome.wustl.edu 37 5 132037846 132037846 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007054.5 -1 validated p.R579Q 1.000 279 0% 146 26.7% 5 40% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL SHROOM1 134549 genome.wustl.edu 37 5 132161022 132161022 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133456.2 -1 validated p.H271Y 0.002 76 0% 102 18.6% 3 33.3% possibly_damaging(0.916) tolerated(0.06) deleterious(0.690) NULL GDF9 2661 genome.wustl.edu 37 5 132197317 132197317 + Silent SNP G G A rs191882278 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005260.3 -1 reviewed p.Y443 0.998 240 0.8% 174 18.4% 1 0% - - - HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501 GDF9 2661 genome.wustl.edu 37 5 132200119 132200119 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005260.3 -1 reviewed p.A36V 0.000 187 0.5% 127 22.8% 0 - benign(0.004) deleterious(0.01) neutral(0.406) NULL AFF4 27125 genome.wustl.edu 37 5 132269971 132269971 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014423.3 -1 validated p.G262 1.000 437 0.2% 257 22.6% 4 25% - - - HMMPfam_AF-4 FSTL4 23105 genome.wustl.edu 37 5 132535381 132535381 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015082.1 -1 validated p.Q645H 0.004 57 1.8% 27 18.5% 0 - benign(0.005) tolerated(0.13) neutral(0.253) superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase CDKN2AIPNL 91368 genome.wustl.edu 37 5 133745592 133745592 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080656.2 -1 validated e2+2 1.000 564 0% 593 15.2% 0 - - - - - PHF15 23338 genome.wustl.edu 37 5 133887801 133887801 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015288.4 +1 provisional p.P71 0.121 128 2.3% 78 29.5% 7 28.5% - - - HMMPfam_EPL1 PHF15 23338 genome.wustl.edu 37 5 133901967 133901967 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015288.4 +1 provisional p.P377 0.000 77 0% 47 21.3% 8 25% - - - NULL PHF15 23338 genome.wustl.edu 37 5 133914189 133914189 + Missense_Mutation SNP C C A rs190789514 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015288.4 +1 provisional p.L519M 0.998 98 0% 88 21.6% 15 40% benign(0.009) tolerated(0.11) neutral(0.272) NULL SAR1B 51128 genome.wustl.edu 37 5 133956708 133956708 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033503.2 -1 reviewed p.L31 1.000 704 0% 328 23.8% 34 67.6% - - - HMMSmart_SAR,HMMPfam_Arf,superfamily_SSF52540 SEC24A 10802 genome.wustl.edu 37 5 133984775 133984775 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021982.1 +1 validated p.Q3H 1.000 25 0% 42 14.3% 5 20% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL SEC24A 10802 genome.wustl.edu 37 5 133997025 133997025 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021982.1 +1 validated p.A105V 0.832 402 0% 238 23.9% 5 20% benign(0) tolerated(1) - NULL SEC24A 10802 genome.wustl.edu 37 5 134032891 134032891 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021982.1 +1 validated p.D688N 1.000 607 0% 314 21.7% 2 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Sec23_trunk,superfamily_vWA-like DDX46 9879 genome.wustl.edu 37 5 134152264 134152264 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014829.2 +1 reviewed p.A861T 1.000 158 0% 79 26.6% 33 54.5% benign(0) tolerated(0.58) neutral(0.005) NULL ENSG00000145832 0 genome.wustl.edu 37 5 135207516 135207516 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000274513 +1 known p.R263M 0.000 93 0% 94 27.7% 0 - benign(0.001) - - NULL TGFBI 7045 genome.wustl.edu 37 5 135394869 135394869 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000358.2 +1 reviewed p.K590T 1.000 152 0% 51 23.5% 85 0% benign(0.002) deleterious(0.01) neutral(0.406) HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain SMAD5 4090 genome.wustl.edu 37 5 135489530 135489530 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398807 +1 known p.E27D 1.000 438 0% 153 25.5% 4 0% benign(0.038) tolerated(0.19) neutral(0.052) HMMSmart_SM00523,superfamily_SMAD MH1 domain SPOCK1 6695 genome.wustl.edu 37 5 136448205 136448205 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004598.3 -1 reviewed p.S131 0.684 179 0% 57 19.3% 4 0% - - - superfamily_SSF100895 MYOT 9499 genome.wustl.edu 37 5 137223040 137223040 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006790.2 +1 reviewed p.A488V 1.000 203 0% 311 21.2% 0 - benign(0.323) tolerated(0.41) neutral(0.116) NULL PKD2L2 27039 genome.wustl.edu 37 5 137257383 137257383 + Missense_Mutation SNP A A G rs184406759 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014386.2 +1 validated p.N463D 0.997 885 0% 364 21.2% 0 - probably_damaging(0.998) tolerated(0.05) deleterious(0.820) HMMPfam_PKD_channel FAM13B 51306 genome.wustl.edu 37 5 137275968 137275968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016603.2 -1 validated p.K898N 1.000 452 0% 195 23.1% 4 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL FAM13B 51306 genome.wustl.edu 37 5 137346763 137346763 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016603.2 -1 validated p.Y208 1.000 448 0% 320 20% 1 0% - - - HMMSmart_RhoGAP,superfamily_Rho_GAP FAM13B 51306 genome.wustl.edu 37 5 137347509 137347509 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016603.2 -1 validated p.E166* 1.000 186 0% 165 18.8% 2 0% - - - HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP FAM13B 51306 genome.wustl.edu 37 5 137354001 137354001 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016603.2 -1 validated p.Q120H 0.997 230 0% 156 25.6% 0 - probably_damaging(0.99) deleterious(0.04) deleterious(0.790) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP NME5 8382 genome.wustl.edu 37 5 137474399 137474399 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003551.2 -1 validated p.V24A 0.998 587 0% 655 22.6% 21 66.6% benign(0.003) tolerated(0.08) neutral(0.300) HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases BRD8 10902 genome.wustl.edu 37 5 137496699 137496699 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139199.1 -1 reviewed p.A770T 1.000 287 0% 100 18% 31 19.3% benign(0.264) tolerated(0.08) neutral(0.328) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain BRD8 10902 genome.wustl.edu 37 5 137502262 137502262 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139199.1 -1 reviewed p.A314 1.000 107 0% 33 36.4% 21 42.8% - - - NULL BRD8 10902 genome.wustl.edu 37 5 137506842 137506842 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139199.1 -1 reviewed p.R82* 1.000 408 0% 210 19.5% 6 16.6% - - - NULL KIF20A 10112 genome.wustl.edu 37 5 137517149 137517149 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005733.2 +1 validated p.Y68* 0.986 298 0% 78 20.5% 7 14.2% - - - HMMSmart_KISc,superfamily_SSF52540 CDC23 8697 genome.wustl.edu 37 5 137533968 137533968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004661.3 -1 reviewed p.S311I 1.000 132 0% 85 23.5% 10 0% benign(0.025) deleterious(0.04) neutral(0.350) superfamily_TPR-like CDC23 8697 genome.wustl.edu 37 5 137534408 137534408 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004661.3 -1 reviewed p.E240* 1.000 226 0% 123 28.5% 5 0% - - - superfamily_TPR-like KDM3B 51780 genome.wustl.edu 37 5 137722158 137722158 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016604.3 +1 validated p.L410M 1.000 212 0.5% 104 41.3% 10 30% probably_damaging(0.996) tolerated(0.19) deleterious(0.511) NULL KDM3B 51780 genome.wustl.edu 37 5 137750859 137750859 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016604.3 +1 validated p.L1080 1.000 279 0% 148 17.6% 17 17.6% - - - NULL KDM3B 51780 genome.wustl.edu 37 5 137756565 137756565 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016604.3 +1 validated p.L1296I 1.000 185 0% 106 22.6% 32 37.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL KDM3B 51780 genome.wustl.edu 37 5 137765625 137765625 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016604.3 +1 validated p.A1622T 1.000 178 0% 136 18.4% 60 46.6% benign(0.086) tolerated(0.35) neutral(0.027) HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like EGR1 1958 genome.wustl.edu 37 5 137801495 137801495 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001964.2 +1 reviewed p.Q15 1.000 40 0% 52 28.8% 11 36.3% - - - NULL EGR1 1958 genome.wustl.edu 37 5 137802531 137802531 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001964.2 +1 reviewed p.I131 0.980 93 0% 101 10.9% 62 38.7% - - - NULL ETF1 2107 genome.wustl.edu 37 5 137854413 137854413 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004730.2 -1 validated p.S77F 1.000 580 0% 177 16.9% 41 31.7% probably_damaging(0.984) deleterious(0.01) deleterious(0.836) HMMPfam_eRF1_1,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1 ETF1 2107 genome.wustl.edu 37 5 137878589 137878589 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004730.2 -1 validated p.A7T 1.000 35 0% 33 21.2% 11 36.3% benign(0) tolerated(0.33) neutral(0.024) HMMPfam_eRF1_1,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1 CTNNA1 1495 genome.wustl.edu 37 5 138147923 138147923 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001903.2 +1 validated p.G174* 1.000 538 0% 638 13.5% 99 1% - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin LRRTM2 26045 genome.wustl.edu 37 5 138209199 138209199 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015564.2 -1 validated p.L351I 1.000 348 0% 197 10.7% 0 - probably_damaging(0.998) tolerated(0.35) deleterious(0.495) NULL CTNNA1 1495 genome.wustl.edu 37 5 138268294 138268294 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001903.2 +1 validated p.L776M 1.000 82 0% 59 23.7% 365 57.5% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin SLC23A1 9963 genome.wustl.edu 37 5 138713749 138713749 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152685.3 -1 reviewed p.R460 0.859 148 0% 128 18.8% 1 0% - - - HMMPfam_Xan_ur_permease SLC23A1 9963 genome.wustl.edu 37 5 138717705 138717705 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152685.3 -1 reviewed p.V62M 1.000 93 0% 93 23.7% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Xan_ur_permease UBE2D2 7322 genome.wustl.edu 37 5 139006340 139006340 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003339.2 +1 reviewed e7-1 1.000 525 0% 296 10.8% 79 97.4% - - - - UBE2D2 7322 genome.wustl.edu 37 5 139006355 139006355 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003339.2 +1 reviewed p.A138V 1.000 518 0% 307 21.2% 251 39.4% benign(0.253) deleterious(0.02) neutral(0.409) HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like HBEGF 1839 genome.wustl.edu 37 5 139725556 139725556 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001945.2 -1 validated p.G54R 0.153 76 0% 109 13.8% 2 0% benign(0.005) tolerated(0.1) neutral(0.286) NULL ANKHD1 54882 genome.wustl.edu 37 5 139907829 139907829 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000435794 +1 known p.C257S 1.000 178 0% 91 22% 35 48.5% - - - NULL APBB3 10307 genome.wustl.edu 37 5 139941585 139941585 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419006 -1 known p.T211I 1.000 107 0% 116 20.7% 3 0% unknown(0) - - NULL TMCO6 55374 genome.wustl.edu 37 5 140021294 140021294 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000515653 +1 known p.G86* 1.000 69 0% 60 31.7% 9 55.5% - - - NULL WDR55 54853 genome.wustl.edu 37 5 140048485 140048485 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017706.4 +1 validated p.G190 0.998 209 0% 209 17.7% 20 35% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 ENSG00000249821 0 genome.wustl.edu 37 5 140165855 140165855 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508944 -1 known NULL 0.000 62 0% 87 28.7% 1 0% - - - - PCDHA1 56147 genome.wustl.edu 37 5 140166008 140166008 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018900.2 +1 reviewed p.V45I 1.000 64 0% 94 31.9% 0 - possibly_damaging(0.92) deleterious(0.03) deleterious(0.736) HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHA1 56147 genome.wustl.edu 37 5 140167326 140167326 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018900.2 +1 reviewed p.A484G 0.988 79 0% 45 24.4% 0 - possibly_damaging(0.585) tolerated(0.14) neutral(0.451) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA2 56146 genome.wustl.edu 37 5 140174795 140174795 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018905.2 +1 reviewed p.G82 0.974 118 0% 142 19.7% 0 - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHA3 56145 genome.wustl.edu 37 5 140181469 140181469 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018906.2 +1 reviewed p.K229N 0.037 79 0% 115 13% 0 - benign(0.001) tolerated(0.14) neutral(0.249) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA4 56144 genome.wustl.edu 37 5 140187070 140187070 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018907.2 +1 reviewed p.A100T 0.000 76 0% 120 21.7% 2 50% benign(0) tolerated(0.24) neutral(0.037) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHA4 56144 genome.wustl.edu 37 5 140188182 140188182 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018907.2 +1 reviewed p.P470 0.116 57 1.8% 88 33% 4 25% - - - HMMPfam_Cadherin,superfamily_Cadherin-like PCDHA4 56144 genome.wustl.edu 37 5 140189083 140189083 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018907.2 +1 reviewed p.A771S 0.996 142 0% 243 27.2% 3 33.3% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) NULL PCDHA6 56142 genome.wustl.edu 37 5 140207893 140207893 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018909.2 +1 reviewed p.D73Y 0.459 115 0.9% 111 21.6% 1 0% possibly_damaging(0.926) deleterious(0) deleterious(0.819) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHA6 56142 genome.wustl.edu 37 5 140208978 140208978 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018909.2 +1 reviewed p.S434 0.000 47 2.1% 60 15% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA6 56142 genome.wustl.edu 37 5 140209126 140209126 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018909.2 +1 reviewed p.A484T 0.072 53 0% 49 22.4% 0 - benign(0.002) tolerated(0.5) neutral(0.010) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA9 9752 genome.wustl.edu 37 5 140229286 140229286 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031857.1 +1 reviewed p.K402N 0.471 143 0% 200 17.5% 0 - probably_damaging(0.998) tolerated(0.06) deleterious(0.797) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA9 9752 genome.wustl.edu 37 5 140229667 140229667 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031857.1 +1 reviewed p.E529D 1.000 34 0% 35 28.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA9 9752 genome.wustl.edu 37 5 140230172 140230172 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031857.1 +1 reviewed p.V698M 0.998 55 0% 44 15.9% 0 - possibly_damaging(0.432) deleterious(0.03) deleterious(0.505) NULL PCDHA10 56139 genome.wustl.edu 37 5 140237435 140237435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018901.2 +1 reviewed p.G601E 1.000 165 0% 152 26.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA10 56139 genome.wustl.edu 37 5 140237701 140237701 + Missense_Mutation SNP G G A rs140097524 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018901.2 +1 reviewed p.A690T 0.000 39 0% 40 35% 2 0% benign(0) tolerated(0.18) neutral(0.056) NULL PCDHA11 56138 genome.wustl.edu 37 5 140248833 140248833 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018902.3 +1 reviewed p.A49T 1.000 92 0% 123 24.4% 2 50% possibly_damaging(0.633) deleterious(0) deleterious(0.665) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHA12 56137 genome.wustl.edu 37 5 140256582 140256582 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018903.2 +1 reviewed p.S509P 0.998 38 0% 32 18.8% 9 88.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA12 56137 genome.wustl.edu 37 5 140256758 140256758 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018903.2 +1 reviewed p.A567 0.012 118 0% 88 22.7% 8 75% - - - superfamily_Cadherin-like PCDHA13 56136 genome.wustl.edu 37 5 140263757 140263757 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018904.2 +1 reviewed p.R635H 0.864 24 0% 21 28.6% 0 - possibly_damaging(0.921) deleterious(0.01) deleterious(0.776) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA13 56136 genome.wustl.edu 37 5 140264050 140264050 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018904.2 +1 reviewed p.A733T 0.012 74 0% 60 23.3% 0 - benign(0) tolerated(0.14) neutral(0.249) NULL PCDHAC1 56135 genome.wustl.edu 37 5 140308646 140308646 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018898.3 +1 reviewed p.E723D 0.022 188 0% 269 21.2% 1 0% possibly_damaging(0.685) tolerated(0.6) neutral(0.249) NULL PCDHB2 56133 genome.wustl.edu 37 5 140475574 140475574 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018936.2 +1 reviewed p.E400D 0.841 238 0% 299 22.1% 30 50% benign(0.001) tolerated(0.39) neutral(0.016) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB2 56133 genome.wustl.edu 37 5 140476015 140476015 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018936.2 +1 reviewed p.A547 0.364 56 0% 25 40% 6 33.3% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB3 56132 genome.wustl.edu 37 5 140482304 140482304 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018937.2 +1 reviewed p.V691M 0.993 54 0% 33 12.1% 1 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL PCDHB5 26167 genome.wustl.edu 37 5 140516495 140516495 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015669.2 +1 reviewed p.Q493 0.000 74 0% 95 24.2% 5 0% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB5 26167 genome.wustl.edu 37 5 140516576 140516576 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015669.2 +1 reviewed p.Y520 0.993 64 0% 84 17.9% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB6 56130 genome.wustl.edu 37 5 140530609 140530609 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018939.2 +1 reviewed p.G257 0.001 148 0% 219 21.9% 1 0% - - - HMMPfam_Cadherin,superfamily_Cadherin PCDHB7 56129 genome.wustl.edu 37 5 140553052 140553052 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018940.2 +1 reviewed p.L212 0.996 99 0% 173 24.3% 2 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB8 56128 genome.wustl.edu 37 5 140558172 140558172 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019120.2 +1 reviewed p.R186H 0.006 162 0% 234 12.4% 7 28.5% benign(0.036) tolerated(0.14) neutral(0.252) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB8 56128 genome.wustl.edu 37 5 140558213 140558213 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019120.2 +1 reviewed p.A200T 0.328 180 0% 243 21.8% 8 12.5% benign(0.01) tolerated(0.13) neutral(0.253) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB16 57717 genome.wustl.edu 37 5 140562319 140562319 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020957.1 +1 reviewed p.R62H 0.118 196 0% 272 27.2% 2 50% possibly_damaging(0.808) deleterious(0.01) deleterious(0.710) HMMPfam_Cadherin_2,superfamily_Cadherin PCDHB16 57717 genome.wustl.edu 37 5 140562479 140562479 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020957.1 +1 reviewed p.E115 0.324 108 0% 130 25.4% 6 33.3% - - - superfamily_Cadherin PCDHB10 56126 genome.wustl.edu 37 5 140573011 140573011 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018930.3 +1 reviewed p.P296T 0.011 200 0% 325 24.3% 1 0% benign(0.002) tolerated(0.08) neutral(0.300) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB11 56125 genome.wustl.edu 37 5 140580944 140580944 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018931.2 +1 reviewed p.A533T 0.973 109 0% 100 19% 3 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB12 56124 genome.wustl.edu 37 5 140590590 140590590 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018932.3 +1 reviewed p.S704L 0.000 57 0% 65 23.1% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL ENSG00000250800 0 genome.wustl.edu 37 5 140593536 140593536 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000507840 -1 novel NULL 0.000 60 0% 73 24.7% 0 - - - - - PCDHB14 56122 genome.wustl.edu 37 5 140603765 140603765 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018934.2 +1 reviewed p.I230V 0.157 79 0% 100 26% 9 66.6% benign(0.017) tolerated(0.34) neutral(0.024) HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin PCDHB15 56121 genome.wustl.edu 37 5 140626263 140626263 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018935.2 +1 reviewed p.R373* 0.556 244 0% 339 20.9% 1 100% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB15 56121 genome.wustl.edu 37 5 140627243 140627243 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018935.2 +1 reviewed p.S699 0.315 63 0% 62 9.7% 3 33.3% - - - NULL SLC25A2 83884 genome.wustl.edu 37 5 140682798 140682798 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031947.2 -1 reviewed p.L212S 0.991 315 0% 389 21.1% 0 - probably_damaging(0.969) deleterious(0.03) deleterious(0.776) superfamily_Mitoch_carrier,HMMPfam_Mito_carr SLC25A2 83884 genome.wustl.edu 37 5 140683143 140683143 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031947.2 -1 reviewed p.G97V 0.800 109 0.9% 118 16.9% 0 - possibly_damaging(0.939) deleterious(0.01) deleterious(0.790) superfamily_Mitoch_carrier PCDHGA2 56113 genome.wustl.edu 37 5 140718989 140718989 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018915.2 +1 reviewed p.R151W 0.000 155 0% 154 19.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Cadherin,superfamily_Cadherin-like PCDHGA2 56113 genome.wustl.edu 37 5 140719281 140719281 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018915.2 +1 reviewed p.R248H 0.023 68 0% 99 10.1% 0 - benign(0.015) tolerated(0.08) neutral(0.300) HMMPfam_Cadherin,superfamily_Cadherin-like PCDHGA2 56113 genome.wustl.edu 37 5 140719710 140719710 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018915.2 +1 reviewed p.P391H 1.000 190 0% 290 25.2% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA2 56113 genome.wustl.edu 37 5 140720013 140720013 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018915.2 +1 reviewed p.A492V 0.000 257 0% 248 21.4% 0 - benign(0) tolerated(0.51) neutral(0.009) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA2 56113 genome.wustl.edu 37 5 140720379 140720379 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018915.2 +1 reviewed p.P614L 0.961 50 0% 44 25% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA2 56113 genome.wustl.edu 37 5 140720625 140720625 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018915.2 +1 reviewed p.A696V 1.000 130 0% 151 24.5% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) NULL PCDHGA4 56111 genome.wustl.edu 37 5 140735534 140735534 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018917.2 +1 reviewed p.P256H 0.949 81 0% 106 17.9% 0 - - - - HMMPfam_Cadherin,superfamily_Cadherin-like PCDHGB2 56103 genome.wustl.edu 37 5 140740094 140740094 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018923.2 +1 reviewed p.P131L 1.000 77 0% 97 21.6% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDHGB2 56103 genome.wustl.edu 37 5 140740990 140740990 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018923.2 +1 reviewed p.P430S 0.936 82 0% 89 29.2% 10 40% possibly_damaging(0.946) deleterious(0.01) deleterious(0.796) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB3 56102 genome.wustl.edu 37 5 140750728 140750728 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018924.2 +1 reviewed p.P256L 0.965 69 0% 130 26.9% 0 - - - - HMMPfam_Cadherin,superfamily_Cadherin-like PCDHGB3 56102 genome.wustl.edu 37 5 140751107 140751107 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018924.2 +1 reviewed p.I382 0.000 210 0% 192 16.7% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB3 56102 genome.wustl.edu 37 5 140751750 140751750 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018924.2 +1 reviewed p.D597N 0.995 31 0% 30 33.3% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA6 56109 genome.wustl.edu 37 5 140755255 140755255 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018919.2 +1 reviewed p.S535 0.007 108 0% 131 26% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA6 56109 genome.wustl.edu 37 5 140755529 140755529 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018919.2 +1 reviewed p.R627C 0.988 48 0% 29 34.5% 2 100% possibly_damaging(0.931) deleterious(0.01) deleterious(0.783) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB4 8641 genome.wustl.edu 37 5 140769155 140769155 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003736.2 +1 reviewed p.D568 0.922 23 0% 28 32.1% 0 - - - - superfamily_Cadherin-like PCDHGB5 56101 genome.wustl.edu 37 5 140779581 140779581 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018925.2 +1 reviewed p.G629 0.404 65 0% 32 37.5% 7 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA9 56107 genome.wustl.edu 37 5 140782718 140782718 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018921.2 +1 reviewed p.V67I 0.099 76 0% 115 18.3% 1 100% - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGA9 56107 genome.wustl.edu 37 5 140783327 140783327 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018921.2 +1 reviewed p.D270N 1.000 90 0% 106 29.2% 1 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB6 56100 genome.wustl.edu 37 5 140787977 140787977 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018926.2 +1 reviewed p.A70T 0.000 274 0.4% 328 26.2% 0 - benign(0.017) tolerated(0.57) neutral(0.007) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGB6 56100 genome.wustl.edu 37 5 140789189 140789189 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018926.2 +1 reviewed p.V474M 0.122 67 0% 75 24% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB6 56100 genome.wustl.edu 37 5 140789399 140789399 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018926.2 +1 reviewed p.A544T 1.000 27 0% 16 25% 0 - benign(0.033) tolerated(0.11) neutral(0.273) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB6 56100 genome.wustl.edu 37 5 140789740 140789740 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018926.2 +1 reviewed p.T657 0.436 91 1.1% 152 28.9% 1 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB6 56100 genome.wustl.edu 37 5 140790102 140790102 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018926.2 +1 reviewed p.D778G 0.899 356 0% 534 24.5% 0 - benign(0.077) tolerated(0.12) neutral(0.266) NULL PCDHGA10 56106 genome.wustl.edu 37 5 140794487 140794487 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018913.2 +1 reviewed p.A582V 0.990 98 0% 108 23.1% 7 85.7% benign(0.199) tolerated(1) neutral(0.019) superfamily_Cadherin-like PCDHGA10 56106 genome.wustl.edu 37 5 140794831 140794831 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018913.2 +1 reviewed p.L697M 0.995 128 0% 124 25% 6 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PCDHGA11 56105 genome.wustl.edu 37 5 140801022 140801022 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018914.2 +1 reviewed p.F76 0.966 87 0% 112 30.4% 1 0% - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGA11 56105 genome.wustl.edu 37 5 140801517 140801517 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018914.2 +1 reviewed p.P241 0.010 82 0% 129 23.3% 0 - - - - HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDHGA11 56105 genome.wustl.edu 37 5 140803131 140803131 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018914.2 +1 reviewed p.T779 0.029 145 0.7% 223 24.2% 0 - - - - NULL PCDHGA12 26025 genome.wustl.edu 37 5 140810631 140810631 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003735.2 +1 reviewed p.C102Y 0.991 89 0% 111 23.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGA12 26025 genome.wustl.edu 37 5 140810727 140810727 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003735.2 +1 reviewed p.R134H 0.000 86 0% 87 19.5% 0 - benign(0.006) tolerated(0.16) neutral(0.059) superfamily_Cadherin-like PCDHGC4 56098 genome.wustl.edu 37 5 140864898 140864898 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018928.2 +1 reviewed p.L53R 1.000 75 0% 104 13.5% 0 - benign(0.001) tolerated(0.24) neutral(0.037) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGC4 56098 genome.wustl.edu 37 5 140867194 140867194 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032406.1 +1 reviewed p.L818 0.208 164 0% 223 21.5% 0 - - - - NULL PCDHGC5 56097 genome.wustl.edu 37 5 140869501 140869501 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018929.2 +1 reviewed p.V232M 0.996 169 0.6% 177 29.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDHGC5 56097 genome.wustl.edu 37 5 140871248 140871248 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018929.2 +1 reviewed p.T814M 0.016 17 0% 23 21.7% 0 - probably_damaging(0.989) tolerated(0.1) deleterious(0.726) NULL DIAPH1 1729 genome.wustl.edu 37 5 140905950 140905950 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005219.4 -1 reviewed p.L1118 1.000 216 0% 118 22.9% 78 50% - - - HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain) HDAC3 8841 genome.wustl.edu 37 5 141005766 141005766 + Silent SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003883.3 -1 reviewed p.R305 0.824 408 0% 356 20.5% 58 48.2% - - - HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase FCHSD1 89848 genome.wustl.edu 37 5 141027540 141027540 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033449.1 -1 provisional p.L234F 0.998 229 0% 200 20% 17 29.4% benign(0.001) deleterious(0.03) neutral(0.364) NULL PCDH1 5097 genome.wustl.edu 37 5 141233768 141233768 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032420.2 -1 reviewed p.V1185M 1.000 44 0% 61 26.2% 6 33.3% possibly_damaging(0.44) tolerated(0.17) neutral(0.202) NULL PCDH1 5097 genome.wustl.edu 37 5 141243347 141243347 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032420.2 -1 reviewed p.R850H 1.000 134 0% 110 25.5% 16 18.7% probably_damaging(1) tolerated(0.2) deleterious(0.549) HMMPfam_Protocadherin PCDH12 51294 genome.wustl.edu 37 5 141335626 141335626 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016580.2 -1 reviewed p.G597 0.003 63 0% 38 10.5% 3 0% - - - superfamily_Cadherin PCDH12 51294 genome.wustl.edu 37 5 141337216 141337216 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016580.2 -1 reviewed p.Q67H 0.998 25 0% 36 33.3% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin ARHGAP26 23092 genome.wustl.edu 37 5 142292822 142292822 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015071.4 +1 reviewed p.E331V 1.000 310 0% 99 23.2% 44 36.3% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like SH3RF2 153769 genome.wustl.edu 37 5 145442060 145442060 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152550.3 +1 validated p.S662 0.014 380 0% 146 17.8% 8 50% - - - NULL PLAC8L1 153770 genome.wustl.edu 37 5 145465160 145465160 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029869.1 -1 provisional p.C86Y 1.000 275 0% 151 23.8% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_PLAC8 LARS 51520 genome.wustl.edu 37 5 145500060 145500060 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020117.9 -1 reviewed p.V1067M 1.000 205 0% 61 31.1% 89 15.7% possibly_damaging(0.935) deleterious(0) deleterious(0.825) NULL LARS 51520 genome.wustl.edu 37 5 145508266 145508266 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020117.9 -1 reviewed p.T950I 0.596 647 0% 169 19.5% 88 73.8% benign(0) tolerated(0.55) neutral(0.007) superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases POU4F3 5459 genome.wustl.edu 37 5 145719807 145719807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002700.2 +1 reviewed p.E273K 1.000 31 0% 34 14.7% 0 - probably_damaging(0.992) tolerated(0.09) deleterious(0.744) superfamily_Homeodomain_like TCERG1 10915 genome.wustl.edu 37 5 145883448 145883448 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006706.3 +1 reviewed p.R870Q 1.000 298 0% 138 20.3% 16 31.2% unknown(0) deleterious(0.05) - NULL PPP2R2B 5521 genome.wustl.edu 37 5 146030151 146030151 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181676.2 -1 reviewed p.R198M 1.000 575 0% 120 19.2% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_subs_rcg,PatternScan_WD_REPEATS_1 PPP2R2B 5521 genome.wustl.edu 37 5 146080702 146080702 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181676.2 -1 reviewed p.D28G 1.000 438 0% 245 22% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like STK32A 202374 genome.wustl.edu 37 5 146750242 146750242 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112724.1 +1 validated p.T229N 1.000 348 0% 131 20.6% 0 - benign(0.038) tolerated(0.21) neutral(0.046) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase DPYSL3 1809 genome.wustl.edu 37 5 146795370 146795370 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001387.2 -1 validated p.A127D 1.000 316 0% 129 24.8% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556 JAKMIP2 9832 genome.wustl.edu 37 5 146997524 146997524 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014790.3 -1 provisional p.D766Y 1.000 385 0.5% 144 12.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL JAKMIP2 9832 genome.wustl.edu 37 5 147040561 147040561 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014790.3 -1 provisional p.E193* 1.000 265 0% 175 21.7% 0 - - - - NULL JAKMIP2 9832 genome.wustl.edu 37 5 147040784 147040784 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014790.3 -1 provisional p.L118 0.964 128 0% 93 29% 2 0% - - - NULL JAKMIP2 9832 genome.wustl.edu 37 5 147040924 147040924 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014790.3 -1 provisional p.E72* 1.000 115 0% 86 24.4% 0 - - - - NULL JAKMIP2 9832 genome.wustl.edu 37 5 147051354 147051354 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014790.3 -1 provisional p.R6* 1.000 334 0% 281 18.1% 1 0% - - - NULL SPINK5 11005 genome.wustl.edu 37 5 147449981 147449981 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127698.1 +1 reviewed p.F59L 0.009 173 0% 75 18.7% 0 - benign(0) deleterious(0) neutral(0.445) HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors SPINK5 11005 genome.wustl.edu 37 5 147492435 147492435 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127698.1 +1 reviewed p.Q609* 0.982 786 0% 267 16.5% 3 0% - - - HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors SPINK13 153218 genome.wustl.edu 37 5 147665608 147665608 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040129.2 +1 provisional p.D94E 0.000 522 0% 302 21.9% 0 - possibly_damaging(0.509) tolerated(0.88) neutral(0.171) NULL SH3TC2 79628 genome.wustl.edu 37 5 148388414 148388414 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024577.3 -1 reviewed p.G1160* 1.000 207 0% 82 19.5% 0 - - - - superfamily_TPR-like ABLIM3 22885 genome.wustl.edu 37 5 148577861 148577861 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014945.2 +1 validated p.L77 1.000 129 0% 82 28% 0 - - - - HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain) ABLIM3 22885 genome.wustl.edu 37 5 148627416 148627416 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014945.2 +1 validated p.P541 0.998 86 0% 32 25% 0 - - - - NULL IL17B 27190 genome.wustl.edu 37 5 148754106 148754106 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014443.2 -1 reviewed p.C123 1.000 11 0% 14 35.7% 1 0% - - - HMMPfam_IL17,superfamily_SSF57501 ARHGEF37 389337 genome.wustl.edu 37 5 148997782 148997782 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001669.2 +1 validated p.R234 0.987 111 0% 47 23.4% 2 100% - - - NULL ARHGEF37 389337 genome.wustl.edu 37 5 148998550 148998550 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001669.2 +1 validated p.S280F 0.987 408 0.2% 268 28.7% 0 - probably_damaging(0.968) deleterious(0) deleterious(0.855) HMMPfam_BAR PPARGC1B 133522 genome.wustl.edu 37 5 149210419 149210419 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133263.3 +1 reviewed p.R185S 1.000 191 0% 101 19.8% 0 - benign(0.002) tolerated(0.52) neutral(0.009) NULL PDE6A 5145 genome.wustl.edu 37 5 149240513 149240513 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000440.2 -1 reviewed p.G843E 0.000 155 0% 56 23.2% 0 - possibly_damaging(0.915) tolerated(0.48) neutral(0.377) superfamily_SSF109604 SLC26A2 1836 genome.wustl.edu 37 5 149357801 149357801 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000112.3 +1 reviewed p.M196L 0.000 323 0% 115 20.9% 11 36.3% benign(0) tolerated(0.71) neutral(0.002) NULL HMGXB3 22993 genome.wustl.edu 37 5 149416301 149416301 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014983.2 +1 validated p.V696F 0.994 114 0% 49 16.3% 16 50% probably_damaging(0.991) deleterious(0.03) deleterious(0.808) NULL CSF1R 1436 genome.wustl.edu 37 5 149457727 149457727 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005211.3 -1 reviewed p.A226V 0.991 219 0% 180 23.9% 11 0% probably_damaging(1) tolerated(0.18) deleterious(0.556) HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 CSF1R 1436 genome.wustl.edu 37 5 149460470 149460470 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005211.3 -1 reviewed p.P56H 0.000 90 0% 93 22.6% 9 0% possibly_damaging(0.931) tolerated(0.09) deleterious(0.674) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 PDGFRB 5159 genome.wustl.edu 37 5 149500492 149500492 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002609.3 -1 reviewed p.R849* 1.000 227 0% 241 24.9% 32 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like PDGFRB 5159 genome.wustl.edu 37 5 149501462 149501462 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002609.3 -1 reviewed p.Y775 0.892 317 0% 411 20.2% 29 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like PDGFRB 5159 genome.wustl.edu 37 5 149511577 149511577 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002609.3 -1 reviewed p.A403V 0.032 162 0% 158 14.6% 11 0% benign(0.196) tolerated(0.26) neutral(0.053) HMMSmart_IG,superfamily_SSF48726 SLC6A7 6534 genome.wustl.edu 37 5 149576316 149576316 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014228.3 +1 validated p.I85 1.000 147 0% 181 14.9% 0 - - - - HMMPfam_SNF TCOF1 6949 genome.wustl.edu 37 5 149753825 149753825 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135243.1 +1 reviewed p.P320H 0.005 30 0% 16 25% 28 46.4% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) HMMPfam_Treacle SYNPO 11346 genome.wustl.edu 37 5 150027891 150027891 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007286.5 +1 validated p.A18 1.000 94 0% 76 15.8% 11 9% - - - NULL SYNPO 11346 genome.wustl.edu 37 5 150028034 150028034 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007286.5 +1 validated p.A66V 0.000 115 0% 119 26.1% 11 27.2% benign(0.06) deleterious(0) neutral(0.449) NULL SYNPO 11346 genome.wustl.edu 37 5 150028062 150028062 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007286.5 +1 validated p.S75 0.000 121 0% 136 16.9% 7 0% - - - NULL SYNPO 11346 genome.wustl.edu 37 5 150028314 150028314 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007286.5 +1 validated p.K159N 0.003 174 0% 182 18.7% 6 0% benign(0.312) deleterious(0) deleterious(0.542) NULL SYNPO 11346 genome.wustl.edu 37 5 150028387 150028387 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007286.5 +1 validated p.A184S 0.000 180 0% 213 21.6% 12 16.6% benign(0.141) deleterious(0.02) neutral(0.395) NULL SYNPO 11346 genome.wustl.edu 37 5 150029478 150029478 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007286.5 +1 validated p.G547 1.000 32 0% 46 26.1% 17 23.5% - - - NULL ZNF300 91975 genome.wustl.edu 37 5 150275788 150275788 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052860.2 -1 reviewed p.S338L 0.008 211 0% 85 24.7% 3 66.6% probably_damaging(0.999) tolerated(0.13) deleterious(0.743) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF300 91975 genome.wustl.edu 37 5 150277624 150277624 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052860.2 -1 reviewed e3+2 0.999 613 0% 251 14.3% 0 - benign(0.139) deleterious(0.02) neutral(0.395) - ANXA6 309 genome.wustl.edu 37 5 150519741 150519741 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001155.3 -1 reviewed p.A28T 1.000 149 0% 74 21.6% 58 13.7% benign(0) tolerated(0.75) neutral(0.002) superfamily_Annexin,HMMPfam_Annexin SLC36A2 153201 genome.wustl.edu 37 5 150715077 150715077 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181776.2 -1 validated p.N186S 0.653 514 0% 169 13% 0 - benign(0) tolerated(0.46) neutral(0.012) HMMPfam_Aa_trans SLC36A1 206358 genome.wustl.edu 37 5 150844114 150844114 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_078483.2 +1 reviewed p.V92M 0.988 127 0% 69 24.6% 0 - probably_damaging(0.981) deleterious(0.02) deleterious(0.808) HMMPfam_Aa_trans SLC36A1 206358 genome.wustl.edu 37 5 150856248 150856248 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_078483.2 +1 reviewed p.G307V 1.000 392 0% 160 16.3% 3 66.6% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) HMMPfam_Aa_trans FAT2 2196 genome.wustl.edu 37 5 150917362 150917362 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001447.2 -1 reviewed p.P3062H 0.996 287 0% 184 23.4% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT2 2196 genome.wustl.edu 37 5 150925085 150925085 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001447.2 -1 reviewed p.S1868Y 0.997 151 0% 82 12.2% 0 - possibly_damaging(0.708) deleterious(0.02) deleterious(0.639) HMMSmart_SM00112,superfamily_Cadherin-like FAT2 2196 genome.wustl.edu 37 5 150933922 150933922 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001447.2 -1 reviewed e4+1 1.000 128 0% 42 19% 0 - - - - - SPARC 6678 genome.wustl.edu 37 5 151052741 151052741 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003118.2 -1 provisional p.G53* 1.000 392 0% 188 25% 300 0% - - - NULL NMUR2 56923 genome.wustl.edu 37 5 151775110 151775110 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020167.4 -1 reviewed p.P283S 1.000 410 0% 204 16.2% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NMUR2 56923 genome.wustl.edu 37 5 151784066 151784066 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020167.4 -1 reviewed p.T203 0.993 254 0% 210 18.6% 1 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like FAM114A2 10827 genome.wustl.edu 37 5 153372560 153372560 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018691.2 -1 validated p.G498 0.002 404 0% 97 27.8% 20 30% - - - NULL FAM114A2 10827 genome.wustl.edu 37 5 153381906 153381906 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018691.2 -1 validated p.A387 1.000 433 0% 97 21.6% 20 45% - - - NULL FAM114A2 10827 genome.wustl.edu 37 5 153390813 153390813 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018691.2 -1 validated p.E327D 1.000 232 0% 81 21% 7 28.5% benign(0.003) tolerated(1) - NULL FAM114A2 10827 genome.wustl.edu 37 5 153406788 153406788 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018691.2 -1 validated p.G246D 1.000 394 0.3% 209 20.1% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF719 LARP1 23367 genome.wustl.edu 37 5 154179434 154179434 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015315.3 +1 validated p.E439 0.810 188 0% 169 27.8% 34 44.1% - - - NULL KIF4B 285643 genome.wustl.edu 37 5 154394581 154394581 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099293.1 +1 provisional p.L388M 0.915 381 0% 505 21.6% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL KIF4B 285643 genome.wustl.edu 37 5 154396290 154396290 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099293.1 +1 provisional p.Q957H 0.992 360 0% 394 24.6% 0 - benign(0.355) tolerated(0.07) neutral(0.431) NULL SGCD 6444 genome.wustl.edu 37 5 155771627 155771627 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000337.5 +1 reviewed p.I44M 1.000 256 0% 99 15.2% 1 0% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) HMMPfam_Sarcoglycan_1 SGCD 6444 genome.wustl.edu 37 5 156074491 156074491 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000337.5 +1 reviewed p.F174L 1.000 397 0% 70 31.4% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_Sarcoglycan_1 HAVCR1 26762 genome.wustl.edu 37 5 156464288 156464288 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099414.1 -1 reviewed p.L308I 0.000 309 0% 133 10.5% 6 16.6% possibly_damaging(0.936) deleterious(0) deleterious(0.826) NULL HAVCR2 84868 genome.wustl.edu 37 5 156522443 156522443 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032782.3 -1 validated p.R184W 0.001 188 0.5% 63 14.3% 28 0% probably_damaging(0.959) deleterious(0.02) deleterious(0.786) NULL HAVCR2 84868 genome.wustl.edu 37 5 156533711 156533711 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032782.3 -1 validated p.I107 0.389 285 0% 105 25.7% 18 0% - - - HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin MED7 9443 genome.wustl.edu 37 5 156565792 156565792 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100816.1 -1 reviewed p.E217 0.992 324 0% 180 18.9% 39 43.5% - - - NULL CYFIP2 26999 genome.wustl.edu 37 5 156731326 156731326 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037332.2 +1 validated p.Y249 0.808 138 0% 111 22.5% 7 28.5% - - - HMMPfam_FragX_IP CYFIP2 26999 genome.wustl.edu 37 5 156746874 156746874 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037332.2 +1 validated p.A487 1.000 150 0% 102 21.6% 17 23.5% - - - HMMPfam_FragX_IP CYFIP2 26999 genome.wustl.edu 37 5 156747788 156747788 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037332.2 +1 validated p.A550D 1.000 75 0% 55 14.5% 9 0% benign(0.052) tolerated(0.65) neutral(0.006) HMMPfam_FragX_IP FNDC9 408263 genome.wustl.edu 37 5 156770303 156770303 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001343.3 -1 validated p.A81V 0.526 202 0% 70 15.7% 0 - benign(0.001) deleterious(0) neutral(0.445) superfamily_FN_III-like ADAM19 8728 genome.wustl.edu 37 5 156916182 156916182 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033274.2 -1 reviewed p.R751S 1.000 143 0% 141 22.7% 1 0% possibly_damaging(0.521) deleterious(0.02) deleterious(0.558) NULL EBF1 1879 genome.wustl.edu 37 5 158141187 158141187 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024007.3 -1 validated p.V377L 1.000 319 0% 139 23% 0 - benign(0.003) tolerated(0.13) neutral(0.253) NULL EBF1 1879 genome.wustl.edu 37 5 158204531 158204531 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024007.3 -1 validated p.A309V 1.000 255 0% 55 14.5% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains UBLCP1 134510 genome.wustl.edu 37 5 158695984 158695984 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145049.3 +1 validated p.E21K 1.000 297 0% 300 14.7% 25 40% benign(0.001) tolerated(0.67) neutral(0.003) HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like UBLCP1 134510 genome.wustl.edu 37 5 158701598 158701598 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145049.3 +1 validated p.T185A 1.000 271 0% 317 19.2% 37 40.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like ADRA1B 147 genome.wustl.edu 37 5 159344196 159344196 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000679.3 +1 reviewed p.S95I 1.000 80 0% 117 17.1% 1 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PWWP2A 114825 genome.wustl.edu 37 5 159507685 159507685 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052927.2 -1 validated p.A548S 1.000 69 0% 49 18.4% 1 0% possibly_damaging(0.753) deleterious(0) deleterious(0.721) NULL PWWP2A 114825 genome.wustl.edu 37 5 159520243 159520243 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130864.1 -1 validated p.P472S 0.997 257 0% 134 17.9% 7 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CCNJL 79616 genome.wustl.edu 37 5 159682676 159682676 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024565.5 -1 validated p.A256V 1.000 124 0% 107 22.4% 0 - probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like CCNJL 79616 genome.wustl.edu 37 5 159686664 159686664 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024565.5 -1 validated p.L180P 1.000 378 0% 191 19.4% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like C5orf54 63920 genome.wustl.edu 37 5 159821179 159821179 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022090.3 -1 validated p.G440D 0.402 150 0% 113 31% 3 66.6% benign(0) tolerated(0.18) neutral(0.056) NULL C5orf54 63920 genome.wustl.edu 37 5 159821692 159821692 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022090.3 -1 validated p.T269K 0.999 242 0% 139 21.6% 6 66.6% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL PTTG1 9232 genome.wustl.edu 37 5 159849389 159849389 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004219.2 +1 reviewed p.L24 0.349 216 0% 246 28.5% 186 40.8% - - - HMMPfam_Securin ATP10B 23120 genome.wustl.edu 37 5 160016701 160016701 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025153.2 -1 validated p.A1216 1.000 449 0% 128 18% 0 - - - - NULL GABRB2 2561 genome.wustl.edu 37 5 160758009 160758009 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021911.2 -1 reviewed p.L320I 1.000 348 0% 335 20% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM GABRB2 2561 genome.wustl.edu 37 5 160972294 160972294 + Missense_Mutation SNP G G T rs75142291 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021911.2 -1 reviewed p.P59H 1.000 136 0% 191 15.2% 0 - possibly_damaging(0.705) tolerated(0.05) deleterious(0.599) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD GABRA1 2554 genome.wustl.edu 37 5 161322685 161322685 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000806.5 +1 reviewed p.V290 1.000 340 0% 143 21% 0 - - - - HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM GABRG2 2566 genome.wustl.edu 37 5 161524828 161524828 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198903.2 +1 reviewed p.R171I 1.000 176 0% 69 18.8% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like GABRG2 2566 genome.wustl.edu 37 5 161530940 161530940 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198903.2 +1 reviewed p.S266Y 1.000 429 0% 91 15.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like HMMR 3161 genome.wustl.edu 37 5 162900416 162900416 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142556.1 +1 reviewed p.L253 0.500 245 0% 155 24.5% 7 28.5% - - - NULL HMMR 3161 genome.wustl.edu 37 5 162901101 162901101 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142556.1 +1 reviewed p.L315I 0.095 290 0% 159 12.6% 9 22.2% probably_damaging(0.998) tolerated(0.1) deleterious(0.761) NULL ENSG00000251018 0 genome.wustl.edu 37 5 162910263 162910263 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000514724 -1 known NULL 0.426 88 0% 29 27.6% 0 - - - - - HMMR 3161 genome.wustl.edu 37 5 162911239 162911239 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142556.1 +1 reviewed p.S650 1.000 155 0% 116 12.1% 18 44.4% - - - NULL MAT2B 27430 genome.wustl.edu 37 5 162945230 162945230 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013283.3 +1 reviewed p.R289H 1.000 251 0% 204 12.7% 177 18.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains ODZ2 57451 genome.wustl.edu 37 5 166711919 166711919 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122679.1 +1 inferred p.S26Y 1.000 73 0% 45 24.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Ten_N ODZ2 57451 genome.wustl.edu 37 5 167645508 167645508 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122679.1 +1 inferred p.A1529T 1.000 214 0.5% 99 24.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat ODZ2 57451 genome.wustl.edu 37 5 167645681 167645681 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122679.1 +1 inferred p.V1586 0.992 197 0% 107 29.9% 0 - - - - superfamily_Concanavalin A-like lectins/glucanases ODZ2 57451 genome.wustl.edu 37 5 167674052 167674052 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122679.1 +1 inferred p.T2027 0.039 93 0% 61 24.6% 0 - - - - HMMPfam_RHS_repeat,superfamily_Concanavalin A-like lectins/glucanases ODZ2 57451 genome.wustl.edu 37 5 167687378 167687378 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122679.1 +1 inferred p.P2499L 1.000 384 0% 242 13.2% 0 - possibly_damaging(0.476) tolerated(0.08) neutral(0.457) NULL ODZ2 57451 genome.wustl.edu 37 5 167689500 167689500 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122679.1 +1 inferred p.F2661 1.000 27 0% 18 22.2% 1 100% - - - NULL WWC1 23286 genome.wustl.edu 37 5 167850783 167850783 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015238.2 +1 reviewed p.A507D 0.574 72 0% 45 17.8% 48 22.9% benign(0.219) tolerated(0.34) neutral(0.044) NULL RARS 5917 genome.wustl.edu 37 5 167920968 167920968 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002887.3 +1 reviewed p.D147N 0.529 412 0% 230 24.8% 37 54% benign(0) tolerated(0.49) neutral(0.011) HMMPfam_Arg_tRNA_synt_N,superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain PANK3 79646 genome.wustl.edu 37 5 167988459 167988459 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024594.2 -1 reviewed p.A292D 1.000 284 0% 262 14.1% 7 57.1% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Fumble,superfamily_SSF53067 ENSG00000233913 0 genome.wustl.edu 37 5 168043964 168043964 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000421908 +1 known p.R203H 0.983 16 0% 19 21.1% 981 0% - - - NULL CCDC99 54908 genome.wustl.edu 37 5 169020467 169020467 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017785.4 +1 validated p.R149H 0.026 214 0% 123 15.4% 16 50% benign(0) tolerated(0.47) neutral(0.011) NULL CCDC99 54908 genome.wustl.edu 37 5 169023691 169023691 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017785.4 +1 validated p.L340M 1.000 132 0% 78 17.9% 19 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CCDC99 54908 genome.wustl.edu 37 5 169026083 169026083 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017785.4 +1 validated p.R415I 0.999 191 0% 85 15.3% 22 40.9% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CCDC99 54908 genome.wustl.edu 37 5 169031139 169031139 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017785.4 +1 validated p.T582 0.063 214 0% 76 25% 22 50% - - - NULL FBXW11 23291 genome.wustl.edu 37 5 171337627 171337627 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012300.2 -1 reviewed p.N108D 1.000 158 0% 61 31.1% 9 44.4% benign(0.152) tolerated(0.23) neutral(0.055) NULL UBTD2 92181 genome.wustl.edu 37 5 171661194 171661194 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152277.2 -1 validated p.A80V 1.000 404 0% 166 21.1% 10 20% probably_damaging(1) tolerated(0.1) deleterious(0.786) NULL SH3PXD2B 285590 genome.wustl.edu 37 5 171765883 171765883 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017995.2 -1 validated p.S742 0.000 112 0% 66 15.2% 3 33.3% - - - NULL SH3PXD2B 285590 genome.wustl.edu 37 5 171766897 171766897 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017995.2 -1 validated p.G404 1.000 172 0% 133 23.3% 2 50% - - - HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 SH3PXD2B 285590 genome.wustl.edu 37 5 171833281 171833281 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017995.2 -1 validated p.G78C 1.000 300 0% 196 23% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PX,HMMSmart_PX,superfamily_PX CREBRF 153222 genome.wustl.edu 37 5 172513604 172513604 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153607.2 +1 validated p.S37L 1.000 247 0% 112 15.2% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL CPEB4 80315 genome.wustl.edu 37 5 173317032 173317032 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030627.2 +1 validated p.S99N 0.997 228 0% 286 21% 1 0% benign(0.004) tolerated(0.31) neutral(0.027) NULL CPEB4 80315 genome.wustl.edu 37 5 173372016 173372016 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030627.2 +1 validated p.G443 0.998 424 0% 149 28.9% 2 50% - - - NULL CPEB4 80315 genome.wustl.edu 37 5 173377042 173377042 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030627.2 +1 validated p.L542 1.000 500 0% 186 12.4% 3 33.3% - - - HMMSmart_SM00360 CPLX2 10814 genome.wustl.edu 37 5 175307224 175307224 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000393746 +1 known p.Q175H 0.570 13 0% 16 25% 0 - unknown(0) - - NULL THOC3 84321 genome.wustl.edu 37 5 175388403 175388403 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032361.2 -1 validated p.A222T 1.000 431 0% 211 18% 171 18.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 THOC3 84321 genome.wustl.edu 37 5 175394164 175394164 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032361.2 -1 validated p.R125H 1.000 897 0.1% 827 10.9% 101 11.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 C5orf25 375484 genome.wustl.edu 37 5 175717398 175717398 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000420396 +1 known p.G272W 0.388 275 0% 204 19.1% 11 45.4% possibly_damaging(0.885) deleterious(0.01) deleterious(0.752) NULL ARL10 285598 genome.wustl.edu 37 5 175798733 175798733 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173664.4 +1 validated p.S190 0.965 177 0% 185 20.5% 0 - - - - HMMPfam_Arf,superfamily_SSF52540 CLTB 1212 genome.wustl.edu 37 5 175819910 175819910 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000310418 -1 known p.E185D 0.991 401 0% 332 21.4% 419 40.5% benign(0.002) tolerated(0.19) neutral(0.050) HMMPfam_Clathrin_lg_ch FAF2 23197 genome.wustl.edu 37 5 175927122 175927122 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014613.2 +1 reviewed p.R377Q 1.000 257 0.4% 65 21.5% 23 52.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_UBX,superfamily_SSF54236 FAF2 23197 genome.wustl.edu 37 5 175933835 175933835 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014613.2 +1 reviewed p.P408S 1.000 320 0% 146 26% 32 43.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UBX,superfamily_SSF54236 RNF44 22838 genome.wustl.edu 37 5 175958554 175958554 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014901.4 -1 reviewed p.Q125H 0.994 62 0% 72 13.9% 45 13.3% probably_damaging(0.997) tolerated(0.25) deleterious(0.503) NULL CDHR2 54825 genome.wustl.edu 37 5 175998280 175998280 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017675.4 +1 reviewed p.A128T 0.000 171 0% 157 14% 0 - benign(0) tolerated(0.15) neutral(0.241) superfamily_Cadherin CDHR2 54825 genome.wustl.edu 37 5 176004399 176004399 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017675.4 +1 reviewed e12-1 1.000 50 0% 35 11.4% 0 - - - - - CDHR2 54825 genome.wustl.edu 37 5 176005062 176005062 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017675.4 +1 reviewed p.G514S 0.975 69 0% 40 25% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin HK3 3101 genome.wustl.edu 37 5 176314302 176314302 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002115.2 -1 reviewed p.T546M 1.000 90 0% 106 20.8% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hexokinase_1,superfamily_SSF53067 HK3 3101 genome.wustl.edu 37 5 176315834 176315834 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002115.2 -1 reviewed p.G316S 1.000 146 0% 95 21.1% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hexokinase_2,superfamily_SSF53067 UIMC1 51720 genome.wustl.edu 37 5 176333019 176333019 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016290.3 -1 provisional p.A648S 0.992 155 0% 78 14.1% 35 25.7% benign(0.015) tolerated(0.55) neutral(0.007) NULL FGFR4 2264 genome.wustl.edu 37 5 176517828 176517828 + Splice_Site SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002011.3 +1 reviewed e3+2 1.000 214 0% 209 12.4% 0 - - - - - FGFR4 2264 genome.wustl.edu 37 5 176520506 176520506 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002011.3 +1 reviewed p.S451G 1.000 54 0% 60 10% 7 0% benign(0.053) deleterious(0) neutral(0.448) NULL FGFR4 2264 genome.wustl.edu 37 5 176522608 176522608 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002011.3 +1 reviewed p.G569C 0.967 48 0% 40 12.5% 12 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) MXD3 83463 genome.wustl.edu 37 5 176737699 176737699 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031300.3 -1 reviewed e3-1 1.000 108 0% 152 14.5% 1 100% - - - - LMAN2 10960 genome.wustl.edu 37 5 176764472 176764472 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006816.2 -1 reviewed p.D189 0.997 82 0% 68 30.9% 453 39.7% - - - HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl RGS14 10636 genome.wustl.edu 37 5 176795181 176795181 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006480.4 +1 reviewed p.A255T 0.001 99 0% 143 16.8% 19 36.8% benign(0.156) tolerated(0.58) neutral(0.019) NULL SLC34A1 6569 genome.wustl.edu 37 5 176815166 176815166 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003052.4 +1 reviewed p.E272 1.000 111 0% 98 23.5% 0 - - - - HMMPfam_Na_Pi_cotrans SLC34A1 6569 genome.wustl.edu 37 5 176821064 176821064 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003052.4 +1 reviewed p.L348M 1.000 96 0% 113 22.1% 0 - benign(0.049) tolerated(0.11) neutral(0.275) NULL SLC34A1 6569 genome.wustl.edu 37 5 176825274 176825274 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003052.4 +1 reviewed p.A636V 0.999 18 0% 29 24.1% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL GRK6 2870 genome.wustl.edu 37 5 176862046 176862046 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002082.3 +1 reviewed p.I327 1.000 114 0% 121 26.4% 55 29% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase DBN1 1627 genome.wustl.edu 37 5 176885490 176885490 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080881.2 -1 reviewed p.A451T 0.018 207 0% 189 27.5% 151 45% benign(0.147) tolerated(0.27) neutral(0.046) NULL DBN1 1627 genome.wustl.edu 37 5 176885513 176885513 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080881.2 -1 reviewed p.A443D 0.003 141 0% 120 15.8% 122 6.5% benign(0.26) deleterious(0.03) neutral(0.392) NULL DBN1 1627 genome.wustl.edu 37 5 176893959 176893959 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080881.2 -1 reviewed p.E222 1.000 67 0% 92 21.7% 106 40.5% - - - NULL DBN1 1627 genome.wustl.edu 37 5 176894051 176894051 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080881.2 -1 reviewed p.L192M 1.000 69 0% 96 22.9% 88 47.7% probably_damaging(0.996) tolerated(0.11) deleterious(0.733) NULL DOK3 79930 genome.wustl.edu 37 5 176931321 176931321 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024872.2 -1 validated p.C385Y 0.986 49 0% 39 35.9% 15 0% possibly_damaging(0.813) deleterious(0.01) deleterious(0.713) NULL LOC202181 202181 genome.wustl.edu 37 5 177059140 177059140 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026921.1 -1 predicted NULL 0.007 368 0% 206 23.8% 0 - - - - - LOC202181 202181 genome.wustl.edu 37 5 177059468 177059468 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026921.1 -1 predicted NULL 0.871 107 0% 54 13% 3 0% - - - - FAM153A 285596 genome.wustl.edu 37 5 177171896 177171896 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173663.3 -1 predicted p.A34V 0.000 554 0.2% 155 14.8% 0 - benign(0.002) tolerated(0.12) neutral(0.261) NULL NHP2 55651 genome.wustl.edu 37 5 177576824 177576824 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017838.3 -1 reviewed p.A118T 0.991 83 0% 90 14.4% 313 27.4% benign(0) tolerated(0.51) neutral(0.009) HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315 COL23A1 91522 genome.wustl.edu 37 5 177674804 177674804 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173465.3 -1 validated p.P414H 0.955 60 0% 45 24.4% 0 - probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_Collagen CLK4 57396 genome.wustl.edu 37 5 178043936 178043936 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020666.2 -1 reviewed p.D163 1.000 302 0% 253 21.3% 7 42.8% unknown(0) - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ZNF354B 117608 genome.wustl.edu 37 5 178310123 178310123 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058230.2 +1 validated p.I224V 0.246 135 0% 77 13% 2 0% probably_damaging(0.972) tolerated(0.42) neutral(0.428) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF454 285676 genome.wustl.edu 37 5 178392532 178392532 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182594.2 +1 validated p.R376I 1.000 172 0% 121 20.7% 1 0% possibly_damaging(0.904) deleterious(0) deleterious(0.803) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF879 345462 genome.wustl.edu 37 5 178459517 178459517 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136116.1 +1 provisional p.V190I 0.255 205 0% 192 20.8% 0 - benign(0) tolerated(0.21) neutral(0.044) superfamily_C2H2 and C2HC zinc fingers ZNF354C 30832 genome.wustl.edu 37 5 178506215 178506215 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014594.1 +1 provisional p.S261Y 0.002 142 0% 95 22.1% 0 - possibly_damaging(0.66) deleterious(0.01) deleterious(0.639) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ADAMTS2 9509 genome.wustl.edu 37 5 178548700 178548700 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014244.2 -1 reviewed p.R1047H 0.793 101 0% 143 22.4% 4 0% probably_damaging(0.965) tolerated(0.11) deleterious(0.678) NULL ENSG00000228259 0 genome.wustl.edu 37 5 179078829 179078829 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000425471 +1 known p.E104D 0.001 291 0% 349 20.6% 0 - unknown(0) tolerated(0.17) - NULL LOC100289470 100289470 genome.wustl.edu 37 5 179079416 179079416 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342585.1 +1 model p.D269Y 0.000 598 0% 574 22.1% 0 - unknown(0) - - NULL MAML1 9794 genome.wustl.edu 37 5 179192586 179192586 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014757.4 +1 reviewed p.A192V 0.911 69 0% 86 19.8% 6 16.6% possibly_damaging(0.731) tolerated(0.08) deleterious(0.567) NULL MGAT4B 11282 genome.wustl.edu 37 5 179225552 179225552 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054013.3 -1 reviewed p.D476 1.000 82 0% 108 20.4% 218 40.3% - - - NULL MGAT4B 11282 genome.wustl.edu 37 5 179226507 179226507 + Missense_Mutation SNP G G A rs182575029 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054013.3 -1 reviewed p.A362V 1.000 112 0% 113 28.3% 204 45% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) HMMPfam_Glyco_transf_54 SQSTM1 8878 genome.wustl.edu 37 5 179250982 179250982 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003900.4 +1 reviewed p.C142 0.999 53 0% 51 23.5% 556 37.5% - - - HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1 SQSTM1 8878 genome.wustl.edu 37 5 179263654 179263654 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000510187 +1 known p.A378 0.001 313 0% 337 22.3% 1202 39.2% - - - NULL TBC1D9B 23061 genome.wustl.edu 37 5 179299970 179299970 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198868.2 -1 validated p.A779 0.324 241 0.4% 201 21.9% 57 38.5% - - - NULL MAPK9 5601 genome.wustl.edu 37 5 179669622 179669622 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002752.4 -1 reviewed p.L274 0.998 453 0% 284 23.2% 25 32% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase GFPT2 9945 genome.wustl.edu 37 5 179762903 179762903 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005110.2 -1 provisional p.A89T 1.000 279 0% 179 27.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_GATase_2,superfamily_SSF56235 CNOT6 57472 genome.wustl.edu 37 5 179998396 179998396 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015455.3 +1 reviewed p.G475 1.000 363 0% 128 21.9% 13 30.7% - - - HMMPfam_Exo_endo_phos,superfamily_DNase I-like FLT4 2324 genome.wustl.edu 37 5 180040067 180040067 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182925.4 -1 reviewed p.C1125 1.000 45 0% 88 22.7% 2 50% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) FLT4 2324 genome.wustl.edu 37 5 180046696 180046696 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182925.4 -1 reviewed p.S872R 1.000 29 0% 59 23.7% 2 0% possibly_damaging(0.826) deleterious(0) deleterious(0.758) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP OR2Y1 134083 genome.wustl.edu 37 5 180166733 180166733 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001657.1 -1 provisional p.S109F 0.001 107 0% 98 20.4% 0 - possibly_damaging(0.921) deleterious(0.04) deleterious(0.720) HMMPfam_7tm_1,superfamily_SSF81321 MGAT1 4245 genome.wustl.edu 37 5 180218664 180218664 + Silent SNP C C T rs190419483 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114617.1 -1 reviewed p.T436 0.928 35 0% 36 22.2% 95 30.5% - - - HMMPfam_GNT-I,superfamily_SSF53448 BTNL8 79908 genome.wustl.edu 37 5 180335825 180335825 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040462.2 +1 validated p.I97L 0.001 215 0% 221 12.2% 0 - benign(0) deleterious(0.02) neutral(0.383) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin BTNL8 79908 genome.wustl.edu 37 5 180374690 180374690 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024850.2 +1 validated p.E284 0.132 270 0% 138 14.5% 0 - - - - NULL BTNL8 79908 genome.wustl.edu 37 5 180376240 180376240 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040462.2 +1 validated p.E279D 0.136 434 0% 210 18.1% 0 - possibly_damaging(0.806) tolerated(0.12) deleterious(0.564) NULL BTNL3 10917 genome.wustl.edu 37 5 180420029 180420029 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_197975.1 +1 validated p.K89T 0.311 292 0% 196 16.3% 0 - benign(0.235) tolerated(0.61) neutral(0.028) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 OR2V1 26693 genome.wustl.edu 37 5 180551651 180551651 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329365 -1 known p.S218 1.000 185 0% 119 16.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR2V2 285659 genome.wustl.edu 37 5 180581986 180581986 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206880.1 +1 provisional p.L15P 0.230 392 0% 234 21.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_SSF81321 OR2V2 285659 genome.wustl.edu 37 5 180582125 180582125 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206880.1 +1 provisional p.Y61* 1.000 708 0% 431 19.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 TRIM41 90933 genome.wustl.edu 37 5 180662362 180662362 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201627.1 +1 validated p.E514* 0.997 327 0% 342 13.2% 41 24.3% - - - NULL TRIM52 84851 genome.wustl.edu 37 5 180687445 180687445 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032765.2 -1 provisional p.E124K 0.969 263 0% 310 19.4% 1 0% benign(0.028) deleterious(0) neutral(0.446) HMMSmart_RING,superfamily_SSF57850 IRF4 3662 genome.wustl.edu 37 6 398912 398912 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002460.2 +1 validated p.S241Y 1.000 146 0% 152 19.7% 2 0% probably_damaging(0.976) deleterious(0.02) deleterious(0.801) NULL IRF4 3662 genome.wustl.edu 37 6 401609 401609 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002460.2 +1 validated p.L311M 0.998 53 0% 58 20.7% 4 0% probably_damaging(0.999) tolerated(0.34) deleterious(0.513) superfamily_SMAD/FHA domain,HMMPfam_IRF-3 EXOC2 55770 genome.wustl.edu 37 6 556014 556014 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018303.4 -1 reviewed e18-1 1.000 440 0% 332 20.5% 0 - - - - - EXOC2 55770 genome.wustl.edu 37 6 576874 576874 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018303.4 -1 reviewed p.G401C 0.002 164 0% 183 28.4% 8 25% benign(0.1) deleterious(0.04) neutral(0.356) NULL NQO2 4835 genome.wustl.edu 37 6 3010360 3010360 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000904.3 +1 validated p.V37I 0.992 178 0% 159 16.4% 38 10.5% possibly_damaging(0.642) deleterious(0.04) deleterious(0.574) HMMPfam_Flavodoxin_2,superfamily_Flavoproteins RIPK1 8737 genome.wustl.edu 37 6 3113322 3113322 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003804.3 +1 validated p.P589T 1.000 148 0.7% 105 21.9% 10 20% probably_damaging(0.985) tolerated(0.06) deleterious(0.754) HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain BPHL 670 genome.wustl.edu 37 6 3152762 3152762 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004332.2 +1 reviewed p.R277C 0.722 453 0% 473 22.8% 35 17.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases TUBB2A 7280 genome.wustl.edu 37 6 3156300 3156300 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001069.2 -1 validated p.N48 1.000 447 0.2% 569 18.6% 3 66.6% - - - HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like PRPF4B 8899 genome.wustl.edu 37 6 4032788 4032788 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003913.4 +1 reviewed p.P346H 1.000 92 0% 54 27.8% 8 25% probably_damaging(0.999) tolerated(0.56) deleterious(0.497) NULL C6orf201 404220 genome.wustl.edu 37 6 4130389 4130389 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085401.1 +1 validated p.C132 0.001 413 0% 342 18.7% 0 - - - - NULL CDYL 9425 genome.wustl.edu 37 6 4892238 4892238 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004824.3 +1 reviewed p.E106K 0.984 226 0% 155 21.3% 11 45.4% benign(0) tolerated(1) - NULL RPP40 10799 genome.wustl.edu 37 6 5004147 5004147 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006638.2 -1 validated p.R30 0.992 47 0% 43 14% 10 10% - - - NULL FARS2 10667 genome.wustl.edu 37 6 5613464 5613464 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006567.3 +1 reviewed p.Y376 0.875 541 0% 192 17.7% 43 23.2% - - - HMMPfam_FDX-ACB,superfamily_Fdx_AntiC_bd F13A1 2162 genome.wustl.edu 37 6 6174875 6174875 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000129.3 -1 reviewed p.T562N 0.996 787 0% 233 22.3% 3 0% probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_Transglut_C,superfamily_Transglut_C F13A1 2162 genome.wustl.edu 37 6 6225063 6225063 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000129.3 -1 reviewed p.V277I 1.000 119 0% 58 22.4% 0 - benign(0.074) tolerated(0.58) neutral(0.010) superfamily_SSF54001 RREB1 6239 genome.wustl.edu 37 6 7229354 7229354 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003699.3 +1 reviewed p.A341V 0.000 49 0% 54 29.6% 6 50% benign(0) deleterious(0.03) neutral(0.364) NULL DSP 1832 genome.wustl.edu 37 6 7581337 7581337 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004415.2 +1 reviewed p.D1638 0.149 47 0% 37 13.5% 12 0% - - - NULL DSP 1832 genome.wustl.edu 37 6 7581745 7581745 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004415.2 +1 reviewed p.Q1774H 1.000 103 0% 68 16.2% 14 42.8% probably_damaging(0.983) deleterious(0.04) deleterious(0.778) superfamily_Prefoldin,superfamily_tRNA-binding arm DSP 1832 genome.wustl.edu 37 6 7584313 7584313 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004415.2 +1 reviewed p.G2273D 1.000 236 0.4% 214 22.9% 33 54.5% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat BMP6 654 genome.wustl.edu 37 6 7880439 7880439 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001718.4 +1 reviewed p.N469D 1.000 469 0% 287 22.3% 3 0% possibly_damaging(0.608) tolerated(0.16) neutral(0.270) HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501 EEF1E1 9521 genome.wustl.edu 37 6 8097669 8097669 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004280.4 -1 reviewed p.S40I 0.986 356 0% 309 11.3% 60 36.6% possibly_damaging(0.509) deleterious(0.04) deleterious(0.519) NULL SLC35B3 51000 genome.wustl.edu 37 6 8417704 8417704 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142540.1 -1 validated p.G268 0.997 245 0% 130 12.3% 32 31.2% - - - HMMPfam_UAA TFAP2A 7020 genome.wustl.edu 37 6 10415218 10415218 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003220.2 -1 reviewed p.M1L 1.000 192 0% 208 14.9% 17 41.1% benign(0) - - NULL GCNT2 2651 genome.wustl.edu 37 6 10586757 10586757 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145655.3 +1 reviewed p.A179T 0.025 120 0% 51 13.7% 1 100% benign(0.01) tolerated(0.59) neutral(0.005) HMMPfam_Branch C6orf52 347744 genome.wustl.edu 37 6 10687392 10687392 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145020.1 -1 provisional p.P26H 0.011 163 0% 80 20% 5 0% possibly_damaging(0.943) deleterious(0) deleterious(0.832) NULL ERVFRD-1 405754 genome.wustl.edu 37 6 11104343 11104343 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207582.2 -1 validated p.T401S 0.295 111 0% 94 26.6% 0 - benign(0.061) tolerated(0.26) neutral(0.038) HMMPfam_TLV_coat NEDD9 4739 genome.wustl.edu 37 6 11190845 11190845 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142393.1 -1 validated p.A419 0.176 156 0% 108 25.9% 26 26.9% - - - HMMPfam_Serine_rich HIVEP1 3096 genome.wustl.edu 37 6 12120471 12120471 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002114.2 +1 validated p.S148Y 0.001 160 0% 117 29.1% 0 - possibly_damaging(0.915) deleterious(0.04) deleterious(0.716) NULL HIVEP1 3096 genome.wustl.edu 37 6 12121951 12121951 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002114.2 +1 validated p.T641 0.000 107 0% 42 21.4% 3 66.6% - - - NULL HIVEP1 3096 genome.wustl.edu 37 6 12123777 12123777 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002114.2 +1 validated p.Q1250R 0.942 169 0% 98 17.3% 1 0% probably_damaging(0.991) deleterious(0.03) deleterious(0.808) NULL HIVEP1 3096 genome.wustl.edu 37 6 12125217 12125217 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002114.2 +1 validated p.S1730Y 0.992 146 0% 74 21.6% 1 100% probably_damaging(0.964) deleterious(0) deleterious(0.851) NULL HIVEP1 3096 genome.wustl.edu 37 6 12163904 12163904 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002114.2 +1 validated p.G2456E 0.965 128 0% 119 16.8% 11 45.4% probably_damaging(0.999) tolerated(0.12) deleterious(0.751) NULL PHACTR1 221692 genome.wustl.edu 37 6 13206249 13206249 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415087 +1 known p.T124M 0.922 25 0% 26 42.3% 0 - - - - NULL TBC1D7 51256 genome.wustl.edu 37 6 13316820 13316820 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143964.1 -1 validated p.D168N 1.000 210 0% 147 15.6% 44 47.7% benign(0.341) tolerated(0.11) neutral(0.379) superfamily_Ypt/Rab-GAP domain of gyp1p GFOD1 54438 genome.wustl.edu 37 6 13470470 13470470 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033069.2 -1 predicted p.A15T 0.000 87 0% 34 23.5% 2 50% unknown(0) - - NULL SIRT5 23408 genome.wustl.edu 37 6 13592007 13592007 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012241.3 +1 reviewed p.R119H 0.088 53 0% 36 25% 22 50% benign(0.114) tolerated(0.42) neutral(0.023) HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain RANBP9 10048 genome.wustl.edu 37 6 13632663 13632663 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005493.2 -1 reviewed p.A629V 0.998 544 0% 280 26.4% 57 42.1% benign(0.001) tolerated(0.06) neutral(0.323) HMMSmart_SM00757,HMMPfam_RanBPM_CRA JARID2 3720 genome.wustl.edu 37 6 15497248 15497248 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004973.2 +1 reviewed p.E598K 1.000 29 3.4% 36 25% 8 25% probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL FAM8A1 51439 genome.wustl.edu 37 6 17602827 17602827 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016255.2 +1 validated p.E240A 1.000 290 0% 503 27.2% 3 66.6% probably_damaging(0.985) deleterious(0.01) deleterious(0.838) NULL NUP153 9972 genome.wustl.edu 37 6 17628931 17628931 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005124.2 -1 reviewed p.A1167T 0.008 206 0% 123 25.2% 29 34.4% benign(0.001) tolerated(0.15) neutral(0.241) NULL NUP153 9972 genome.wustl.edu 37 6 17629205 17629205 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005124.2 -1 reviewed p.M1075I 0.001 118 0% 55 12.7% 20 30% benign(0.002) tolerated(0.14) neutral(0.249) NULL KIF13A 63971 genome.wustl.edu 37 6 17779227 17779227 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022113.4 -1 validated p.R1348Q 0.986 435 0.2% 223 11.7% 3 33.3% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL KIF13A 63971 genome.wustl.edu 37 6 17800206 17800206 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022113.4 -1 validated p.R865* 1.000 333 0% 160 26.9% 3 0% - - - NULL KDM1B 221656 genome.wustl.edu 37 6 18207661 18207661 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153042.3 +1 validated p.F332L 1.000 327 0% 141 17% 5 60% benign(0.428) tolerated(0.48) neutral(0.150) HMMPfam_Amino_oxidase,superfamily_SSF51905 MBOAT1 154141 genome.wustl.edu 37 6 20102542 20102542 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080480.1 -1 provisional p.S488F 0.998 438 0% 362 23.8% 38 60.5% possibly_damaging(0.848) deleterious(0.02) deleterious(0.709) NULL E2F3 1871 genome.wustl.edu 37 6 20481589 20481589 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001949.3 +1 reviewed p.D220N 1.000 233 0.4% 69 21.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_E2F_TDP,superfamily_SSF46785 MRS2 57380 genome.wustl.edu 37 6 24409801 24409801 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020662.2 +1 validated p.E138D 1.000 286 0% 350 23.7% 7 0% probably_damaging(0.991) tolerated(0.33) neutral(0.468) HMMPfam_CorA MRS2 57380 genome.wustl.edu 37 6 24412499 24412499 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020662.2 +1 validated p.R155H 1.000 268 0% 340 17.9% 6 66.6% benign(0.013) tolerated(0.56) neutral(0.007) HMMPfam_CorA ALDH5A1 7915 genome.wustl.edu 37 6 24515539 24515539 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170740.1 +1 reviewed e6+1 1.000 236 0% 127 17.3% 0 - - - - - FAM65B 9750 genome.wustl.edu 37 6 24843333 24843333 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014722.2 -1 validated p.S559 0.033 272 0.4% 74 20.3% 2 50% - - - NULL FAM65B 9750 genome.wustl.edu 37 6 24843392 24843392 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014722.2 -1 validated p.A540T 0.962 228 0% 50 22% 4 0% benign(0.386) tolerated(0.09) neutral(0.420) NULL FAM65B 9750 genome.wustl.edu 37 6 24875953 24875953 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014722.2 -1 validated p.A23T 1.000 96 0% 39 20.5% 4 0% probably_damaging(0.961) deleterious(0) deleterious(0.849) NULL LRRC16A 55604 genome.wustl.edu 37 6 25600666 25600666 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017640.5 +1 validated p.R1082* 1.000 77 0% 42 23.8% 9 11.1% - - - NULL SCGN 10590 genome.wustl.edu 37 6 25661842 25661842 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000334979 +1 known p.L49I 0.019 408 0% 289 14.9% 0 - unknown(0) - - NULL SLC17A4 10050 genome.wustl.edu 37 6 25777130 25777130 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005495.2 +1 validated p.A404V 0.000 140 0% 51 27.5% 0 - benign(0.001) tolerated(0.13) neutral(0.253) HMMPfam_MFS_1,superfamily_MFS general substrate transporter SLC17A3 10786 genome.wustl.edu 37 6 25851091 25851091 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098486.1 -1 validated p.V243I 0.880 428 0% 145 22.1% 0 - benign(0.076) tolerated(0.5) neutral(0.015) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter HIST1H1A 3024 genome.wustl.edu 37 6 26017446 26017446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005325.3 -1 reviewed p.P172H 0.580 379 0% 592 22.8% 0 - unknown(0) deleterious(0.02) - NULL HIST1H2BB 3018 genome.wustl.edu 37 6 26043842 26043842 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021062.2 -1 reviewed p.S15Y 0.989 373 0% 346 23.7% 0 - possibly_damaging(0.883) deleterious(0) deleterious(0.789) superfamily_Histone-fold HIST1H3C 8352 genome.wustl.edu 37 6 26045833 26045833 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003531.2 +1 reviewed p.K65 1.000 75 0% 54 16.7% 0 - - - - HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold HIST1H2BC 8347 genome.wustl.edu 37 6 26124040 26124040 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003526.2 -1 reviewed p.K31 1.000 343 0% 288 20.8% 3 100% - - - HMMSmart_SM00427,superfamily_Histone-fold HIST1H3E 8353 genome.wustl.edu 37 6 26225632 26225632 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003532.2 +1 reviewed p.R84C 1.000 183 0% 198 22.7% 3 0% probably_damaging(0.993) - - HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold BTN3A2 11118 genome.wustl.edu 37 6 26368897 26368897 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007047.3 +1 reviewed p.E64K 1.000 817 0% 267 20.2% 18 22.2% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 BTN3A2 11118 genome.wustl.edu 37 6 26370573 26370573 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007047.3 +1 reviewed p.E153K 0.000 446 0% 177 20.9% 26 15.3% benign(0.066) tolerated(0.57) neutral(0.010) HMMPfam_V-set,superfamily_SSF48726 BTN2A2 10385 genome.wustl.edu 37 6 26385503 26385503 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006995.3 +1 reviewed p.V119I 0.996 356 0% 193 22.8% 3 0% benign(0.085) tolerated(0.12) neutral(0.267) HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin BTN2A2 10385 genome.wustl.edu 37 6 26388485 26388485 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006995.3 +1 reviewed p.L229 0.972 305 0% 136 25% 8 12.5% - - - HMMPfam_C2-set_2,superfamily_Immunoglobulin BTN2A2 10385 genome.wustl.edu 37 6 26390424 26390424 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006995.3 +1 reviewed p.E306* 0.488 412 0% 196 21.9% 3 0% - - - NULL BTN2A2 10385 genome.wustl.edu 37 6 26392822 26392822 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006995.3 +1 reviewed p.R400I 0.002 601 0% 265 26% 7 0% benign(0.249) deleterious(0.01) neutral(0.431) HMMPfam_SPRY,HMMSmart_SM00449 BTN3A1 11119 genome.wustl.edu 37 6 26406211 26406211 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007048.5 +1 validated p.L54M 0.143 640 0% 246 24.4% 21 23.8% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin BTN3A3 10384 genome.wustl.edu 37 6 26452183 26452183 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006994.4 +1 validated p.T433 0.005 471 0% 186 19.4% 37 8.1% - - - HMMPfam_SPRY,HMMSmart_SPRY BTN2A1 11120 genome.wustl.edu 37 6 26459992 26459992 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007049.2 +1 reviewed p.T122 0.166 240 0% 172 24.4% 18 27.7% - - - HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin ENSG00000250311 0 genome.wustl.edu 37 6 26476648 26476648 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000511597 -1 known NULL 0.865 117 0% 54 11.1% 2 50% - - - - ENSG00000250311 0 genome.wustl.edu 37 6 26478194 26478194 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000511597 -1 known NULL 0.941 87 0% 25 16% 0 - - - - - ZNF322 79692 genome.wustl.edu 37 6 26638329 26638329 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024639.3 -1 validated p.G151 0.942 424 0% 229 8.3% 5 100% - - - superfamily_SSF57667 PRSS16 10279 genome.wustl.edu 37 6 27216665 27216665 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005865.3 +1 reviewed p.G93R 0.011 227 0% 246 22.4% 0 - possibly_damaging(0.513) deleterious(0) deleterious(0.617) HMMPfam_Peptidase_S28,superfamily_SSF53474 PRSS16 10279 genome.wustl.edu 37 6 27220683 27220683 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005865.3 +1 reviewed p.G369C 1.000 291 0% 256 25.4% 24 29.1% unknown(0) tolerated(0.18) - HMMPfam_Peptidase_S28,superfamily_SSF53474 PRSS16 10279 genome.wustl.edu 37 6 27222602 27222602 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005865.3 +1 reviewed p.S427 1.000 91 1.1% 99 30.3% 5 20% - - - HMMPfam_Peptidase_S28,superfamily_SSF53474 ZNF184 7738 genome.wustl.edu 37 6 27419214 27419214 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007149.2 -1 validated p.S708 0.989 531 0% 213 17.8% 10 30% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF184 7738 genome.wustl.edu 37 6 27419911 27419911 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007149.2 -1 validated p.C476Y 0.998 329 0% 119 18.5% 6 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF184 7738 genome.wustl.edu 37 6 27420060 27420060 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007149.2 -1 validated p.A426 1.000 419 0% 190 20% 4 25% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF184 7738 genome.wustl.edu 37 6 27420146 27420146 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007149.2 -1 validated p.A398T 1.000 228 0% 130 11.5% 4 50% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF184 7738 genome.wustl.edu 37 6 27420426 27420426 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007149.2 -1 validated p.K304 0.990 279 0% 145 22.8% 7 28.5% - - - superfamily_C2H2 and C2HC zinc fingers HIST1H2BL 8340 genome.wustl.edu 37 6 27775665 27775665 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003519.3 -1 reviewed p.S7Y 1.000 296 0% 316 23.1% 1 0% possibly_damaging(0.549) deleterious(0) deleterious(0.631) superfamily_Histone-fold HIST1H2AL 8332 genome.wustl.edu 37 6 27833519 27833519 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003511.2 +1 reviewed p.G129 1.000 239 0% 210 25.7% 0 - - - - superfamily_Histone-fold ZNF192 7745 genome.wustl.edu 37 6 28121473 28121473 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006298.2 +1 validated p.R472M 0.802 170 0% 152 21.1% 0 - probably_damaging(0.995) tolerated(0.15) deleterious(0.699) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PGBD1 84547 genome.wustl.edu 37 6 28269694 28269694 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032507.3 +1 reviewed p.R688H 0.797 423 0% 138 18.8% 2 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL PGBD1 84547 genome.wustl.edu 37 6 28269880 28269880 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032507.3 +1 reviewed p.R750M 0.029 307 0% 102 17.6% 3 0% possibly_damaging(0.677) deleterious(0) deleterious(0.685) NULL ZNF323 64288 genome.wustl.edu 37 6 28293769 28293769 + RNA SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024164.1 -1 validated NULL 0.001 16 0% 21 28.6% 6 66.6% - - - - ZNF323 64288 genome.wustl.edu 37 6 28295181 28295181 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135215.1 -1 validated p.L171I 0.000 462 0% 225 12.9% 12 0% benign(0.005) tolerated(0.2) neutral(0.049) NULL ZNF323 64288 genome.wustl.edu 37 6 28297227 28297227 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135215.1 -1 validated p.I78 1.000 206 0% 144 22.9% 3 66.6% - - - HMMPfam_SCAN,HMMSmart_SCAN ZKSCAN3 80317 genome.wustl.edu 37 6 28333278 28333278 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024493.2 +1 validated p.S278L 0.000 140 5.7% 81 45.7% 2 100% benign(0) tolerated(0.37) neutral(0.019) NULL ZKSCAN3 80317 genome.wustl.edu 37 6 28333383 28333383 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024493.2 +1 validated p.R313Q 0.002 304 0% 199 21.6% 0 - benign(0.419) tolerated(0.35) neutral(0.157) superfamily_SSF57667 ZSCAN12 9753 genome.wustl.edu 37 6 28350334 28350334 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000361028 -1 known p.A583S 0.991 602 0% 650 11.5% 3 33.3% benign(0.355) deleterious(0) deleterious(0.557) NULL ZSCAN12 9753 genome.wustl.edu 37 6 28360810 28360810 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000361028 -1 known p.T139I 0.000 437 0% 263 14.4% 1 0% possibly_damaging(0.765) tolerated(0.26) neutral(0.318) HMMSmart_SCAN ZSCAN23 222696 genome.wustl.edu 37 6 28402287 28402287 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012455.1 -1 validated p.N375 0.621 362 0% 168 22% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 GPX5 2880 genome.wustl.edu 37 6 28501867 28501867 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001509.2 +1 reviewed p.R197C 1.000 198 0% 119 21% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Thiordxn-like_fd SCAND3 114821 genome.wustl.edu 37 6 28539825 28539825 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052923.1 -1 provisional p.F1281V 0.876 262 0% 103 18.4% 5 20% probably_damaging(0.957) deleterious(0) deleterious(0.845) HMMPfam_hATC SCAND3 114821 genome.wustl.edu 37 6 28542517 28542517 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052923.1 -1 provisional p.R655 1.000 291 0% 143 25.9% 1 0% - - - NULL SCAND3 114821 genome.wustl.edu 37 6 28554335 28554335 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052923.1 -1 provisional p.R54C 0.956 290 0% 222 17.6% 0 - possibly_damaging(0.676) deleterious(0) deleterious(0.685) HMMPfam_SCAN,HMMSmart_SCAN OR2B3 442184 genome.wustl.edu 37 6 29054409 29054409 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005226.2 -1 validated p.I206S 0.001 85 0% 49 16.3% 0 - benign(0.198) deleterious(0) neutral(0.464) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR10C1 442194 genome.wustl.edu 37 6 29408527 29408527 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013941.2 +1 provisional p.I245 0.000 46 0% 40 17.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 GABBR1 2550 genome.wustl.edu 37 6 29599305 29599305 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001470.2 -1 reviewed p.A53T 1.000 79 0% 86 24.4% 0 - benign(0.004) deleterious(0.02) neutral(0.383) HMMSmart_SM00032,superfamily_Complement control module/SCR domain HLA-G 3135 genome.wustl.edu 37 6 29796591 29796591 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002127.5 +1 reviewed p.R205 0.752 41 0% 45 20% 71 0% - - - superfamily_MHC antigen-recognition domain PPP1R10 5514 genome.wustl.edu 37 6 30569411 30569411 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002714.2 -1 reviewed p.R913Q 1.000 112 0% 84 17.9% 107 28.9% unknown(0) deleterious(0) - HMMPfam_zf-CCCH,HMMSmart_SM00356 MDC1 9656 genome.wustl.edu 37 6 30671528 30671528 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014641.2 -1 reviewed p.R1811H 0.028 430 0% 348 25.9% 31 32.2% benign(0.248) tolerated(0.24) neutral(0.062) NULL MDC1 9656 genome.wustl.edu 37 6 30672521 30672521 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014641.2 -1 reviewed p.R1480K 0.001 398 0% 302 23.2% 13 53.8% possibly_damaging(0.543) tolerated(0.55) neutral(0.191) NULL MDC1 9656 genome.wustl.edu 37 6 30673549 30673549 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000417033 -1 known p.H198Y 0.000 700 0% 504 23% 6 50% - - - NULL DPCR1 135656 genome.wustl.edu 37 6 30917380 30917380 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000462446 +1 known p.P380H 0.008 972 0% 645 19.5% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL C6orf15 29113 genome.wustl.edu 37 6 31080019 31080019 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014070.2 -1 validated p.N39K 0.007 260 0% 226 19.5% 0 - benign(0.039) tolerated(0.09) neutral(0.298) NULL CDSN 1041 genome.wustl.edu 37 6 31084106 31084106 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001264.3 -1 reviewed p.G429D 0.025 131 0% 88 27.3% 1 0% probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL MICA 100507436 genome.wustl.edu 37 6 31380115 31380115 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000376219 +1 known p.V302 0.001 672 0% 465 18.5% 36 33.3% - - - NULL DDX39B 7919 genome.wustl.edu 37 6 31506768 31506768 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000449074 -1 known p.A136 0.000 58 0% 55 21.8% 0 - - - - NULL ABHD16A 7920 genome.wustl.edu 37 6 31656801 31656801 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021160.2 -1 reviewed p.D393Y 0.974 101 0% 72 13.9% 179 24.5% possibly_damaging(0.44) deleterious(0.04) deleterious(0.492) HMMPfam_Abhydrolase_1,superfamily_SSF53474 LY6G6C 80740 genome.wustl.edu 37 6 31686978 31686978 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025261.1 -1 validated p.C91* 1.000 239 0% 224 22.3% 0 - - - - superfamily_Snake toxin-like CLIC1 1192 genome.wustl.edu 37 6 31701980 31701980 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001288.4 -1 reviewed p.L34M 0.996 193 0% 201 18.9% 1197 40.6% probably_damaging(0.993) deleterious(0) deleterious(0.895) superfamily_Thioredoxin-like MSH5 4439 genome.wustl.edu 37 6 31711744 31711744 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025259.5 +1 reviewed p.T160I 0.969 17 0% 27 22.2% 7 42.8% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL SAPCD1 401251 genome.wustl.edu 37 6 31731922 31731922 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039651.1 +1 provisional p.L113M 0.989 579 0% 435 20.7% 7 57.1% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SKIV2L 6499 genome.wustl.edu 37 6 31937115 31937115 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000491994 +1 known p.W151* 1.000 747 0% 640 19.2% 73 43.8% benign(0.37) tolerated(0.23) neutral(0.159) HMMPfam_DSHCT CYP21A2 1589 genome.wustl.edu 37 6 32007234 32007234 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000500.5 +1 reviewed p.K183N 0.000 242 0% 283 25.1% 0 - possibly_damaging(0.922) deleterious(0.01) deleterious(0.777) HMMPfam_p450,superfamily_Cytochrome_P450 TNXB 7148 genome.wustl.edu 37 6 32017162 32017162 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019105.6 -1 reviewed p.G3212 0.011 35 0% 28 14.3% 2 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III TNXB 7148 genome.wustl.edu 37 6 32036395 32036395 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019105.6 -1 reviewed p.A1998T 0.026 54 0% 66 18.2% 0 - probably_damaging(0.959) tolerated(0.31) neutral(0.430) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ATF6B 1388 genome.wustl.edu 37 6 32084551 32084551 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004381.4 -1 reviewed p.R576H 0.908 212 0% 148 25.7% 96 33.3% benign(0.265) tolerated(0.17) neutral(0.086) NULL FKBPL 63943 genome.wustl.edu 37 6 32097332 32097332 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022110.3 -1 reviewed p.D76Y 0.803 269 0% 321 25.5% 10 40% probably_damaging(0.97) deleterious(0) deleterious(0.857) NULL HLA-DQB1 3119 genome.wustl.edu 37 6 32629970 32629970 + Silent SNP G G A rs9274013 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002123.3 -1 reviewed p.N145 0.989 23 0% 32 28.1% 119 0% - - - HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin HLA-DQB2 3120 genome.wustl.edu 37 6 32726853 32726853 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000427449 -1 known p.T139I 1.000 33 0% 42 14.3% 171 0% - - - HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin TAP1 6890 genome.wustl.edu 37 6 32816429 32816429 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000593.5 -1 reviewed p.Q582H 1.000 433 0% 484 24.6% 364 12.3% probably_damaging(0.993) deleterious(0) deleterious(0.895) superfamily_SSF52540 LOC100287516 100287516 genome.wustl.edu 37 6 32940841 32940841 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342622.1 -1 model p.P36 0.014 17 0% 12 33.3% 0 - - - - NULL COL11A2 1302 genome.wustl.edu 37 6 33133584 33133584 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080680.2 -1 reviewed p.G1498S 0.983 25 0% 33 21.2% 0 - unknown(0) tolerated(0.07) - NULL COL11A2 1302 genome.wustl.edu 37 6 33141688 33141688 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080680.2 -1 reviewed p.R849W 1.000 122 0% 111 25.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Collagen LOC100289525 100289525 genome.wustl.edu 37 6 33179485 33179485 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342641.1 -1 model p.G146C 0.000 55 0% 70 22.9% 1 0% - - - NULL VPS52 6293 genome.wustl.edu 37 6 33234970 33234970 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022553.4 -1 reviewed p.Q374* 1.000 208 0% 158 29.7% 30 10% - - - HMMPfam_Vps52 PHF1 5252 genome.wustl.edu 37 6 33382520 33382520 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439397 +1 known p.R69K 1.000 336 0% 362 20.7% 49 36.7% - - - NULL SYNGAP1 8831 genome.wustl.edu 37 6 33403390 33403390 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006772.2 +1 reviewed p.K254N 1.000 204 0.5% 192 24.5% 0 - possibly_damaging(0.744) deleterious(0.01) deleterious(0.679) superfamily_PH domain-like SYNGAP1 8831 genome.wustl.edu 37 6 33411044 33411044 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006772.2 +1 reviewed p.R905 0.771 18 0% 15 46.7% 3 33.3% - - - NULL ITPR3 3710 genome.wustl.edu 37 6 33630715 33630715 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002224.2 +1 validated p.G296* 1.000 144 0% 165 24.8% 9 0% - - - HMMPfam_MIR,superfamily_MIR,HMMSmart_MIR MNF1 84300 genome.wustl.edu 37 6 33669152 33669152 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032340.2 -1 predicted p.R62* 0.987 350 0% 233 11.6% 206 3.8% - - - NULL IP6K3 117283 genome.wustl.edu 37 6 33694557 33694557 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142883.1 -1 reviewed p.Q180H 1.000 72 0% 57 31.6% 0 - benign(0.422) deleterious(0.01) deleterious(0.542) HMMPfam_IPK,superfamily_SAICAR synthase-like PACSIN1 29993 genome.wustl.edu 37 6 34499533 34499533 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020804.2 +1 validated p.G398 1.000 41 0% 39 28.2% 0 - - - - HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain PACSIN1 29993 genome.wustl.edu 37 6 34499563 34499563 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020804.2 +1 validated p.A408 0.988 37 0% 43 20.9% 1 0% - - - HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain SPDEF 25803 genome.wustl.edu 37 6 34511828 34511828 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012391.1 -1 provisional p.E135D 1.000 40 0% 34 26.5% 95 47.3% benign(0.014) tolerated(0.54) neutral(0.008) HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology SPDEF 25803 genome.wustl.edu 37 6 34511872 34511872 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012391.1 -1 provisional p.Q121K 1.000 44 0% 35 14.3% 97 13.4% possibly_damaging(0.804) tolerated(0.13) deleterious(0.555) superfamily_SAM_homology SNRPC 6631 genome.wustl.edu 37 6 34730433 34730433 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003093.2 +1 reviewed p.Y38C 1.000 310 0% 130 22.3% 256 41% possibly_damaging(0.876) deleterious(0) deleterious(0.786) HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers TCP11 6954 genome.wustl.edu 37 6 35096878 35096878 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000469514 -1 known p.T82I 0.999 440 0% 194 27.3% 0 - unknown(0) - - NULL ZNF76 7629 genome.wustl.edu 37 6 35258084 35258084 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003427.3 +1 provisional p.Q158 0.999 145 0% 121 18.2% 32 37.5% - - - NULL DEF6 50619 genome.wustl.edu 37 6 35287456 35287456 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022047.3 +1 validated p.I457 0.091 88 0% 93 23.7% 43 27.9% - - - NULL PPARD 5467 genome.wustl.edu 37 6 35392250 35392250 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006238.4 +1 reviewed p.R258W 1.000 98 0% 63 22.2% 30 30% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain FANCE 2178 genome.wustl.edu 37 6 35423612 35423612 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021922.2 +1 reviewed p.G113W 0.000 78 0% 92 18.5% 7 28.5% probably_damaging(0.973) tolerated(0.19) neutral(0.464) NULL TEAD3 7005 genome.wustl.edu 37 6 35443791 35443791 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000402886 -1 known p.R209C 1.000 196 0% 228 23.2% 10 10% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TEA TULP1 7287 genome.wustl.edu 37 6 35477440 35477440 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003322.3 -1 reviewed p.S230N 0.010 353 0% 373 22.3% 0 - benign(0.038) tolerated(0.44) neutral(0.015) NULL ARMC12 221481 genome.wustl.edu 37 6 35705914 35705914 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145028.3 +1 predicted p.S119R 1.000 69 0% 65 21.5% 0 - benign(0.244) tolerated(0.17) neutral(0.083) HMMPfam_DUF634,superfamily_ARM-type_fold SLC26A8 116369 genome.wustl.edu 37 6 35919008 35919008 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052961.2 -1 reviewed p.G802C 0.013 277 0% 107 12.1% 0 - possibly_damaging(0.793) tolerated(0.06) deleterious(0.621) NULL MAPK13 5603 genome.wustl.edu 37 6 36099070 36099070 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002754.3 +1 reviewed p.G48R 1.000 20 0% 60 15% 22 4.5% possibly_damaging(0.939) tolerated(0.17) neutral(0.444) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase MAPK13 5603 genome.wustl.edu 37 6 36104432 36104432 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002754.3 +1 reviewed e7-1 1.000 54 0% 65 13.8% 0 - - - - - BRPF3 27154 genome.wustl.edu 37 6 36169446 36169446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015695.2 +1 validated p.K449N 0.935 287 0% 231 20.8% 5 20% benign(0.344) tolerated(0.1) neutral(0.395) NULL CPNE5 57699 genome.wustl.edu 37 6 36710090 36710090 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020939.1 -1 reviewed p.S579 0.987 66 0% 45 17.8% 3 33.3% - - - NULL CPNE5 57699 genome.wustl.edu 37 6 36742749 36742749 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020939.1 -1 reviewed p.G242 0.198 473 0% 261 21.5% 0 - - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB MTCH1 23787 genome.wustl.edu 37 6 36940463 36940463 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373627 -1 known p.G291W 0.998 153 0% 119 24.4% 122 41.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Mitochondrial carrier FGD2 221472 genome.wustl.edu 37 6 36981843 36981843 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173558.3 +1 validated p.P264S 1.000 71 0% 52 19.2% 7 0% possibly_damaging(0.521) tolerated(0.11) neutral(0.447) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) FGD2 221472 genome.wustl.edu 37 6 36990015 36990015 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173558.3 +1 validated p.L443M 0.748 35 0% 27 25.9% 5 0% benign(0.198) tolerated(0.19) neutral(0.069) superfamily_PH domain-like TMEM217 221468 genome.wustl.edu 37 6 37186560 37186560 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145316.3 -1 validated p.L83M 0.011 531 0.2% 301 23.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL BTBD9 114781 genome.wustl.edu 37 6 38142950 38142950 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099272.1 -1 reviewed p.H550 1.000 110 0% 83 21.7% 5 40% - - - superfamily_Gal_bind_like DNAH8 1769 genome.wustl.edu 37 6 38709553 38709553 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.H178Y 1.000 301 0% 125 23.2% 0 - benign(0.001) tolerated(1) - HMMPfam_DHC_N1 DNAH8 1769 genome.wustl.edu 37 6 38723785 38723785 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.A265V 1.000 391 0% 148 18.2% 0 - benign(0.043) tolerated(0.14) neutral(0.252) HMMPfam_DHC_N1 DNAH8 1769 genome.wustl.edu 37 6 38747763 38747763 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.P470 0.997 419 0% 117 13.7% 0 - - - - HMMPfam_DHC_N1 DNAH8 1769 genome.wustl.edu 37 6 38749030 38749030 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.L497I 1.000 199 0% 89 15.7% 0 - benign(0.001) tolerated(0.41) neutral(0.015) HMMPfam_DHC_N1 DNAH8 1769 genome.wustl.edu 37 6 38794033 38794033 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.A1100S 0.938 269 0% 41 17.1% 0 - benign(0) tolerated(0.72) neutral(0.002) NULL DNAH8 1769 genome.wustl.edu 37 6 38867640 38867640 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.S2834Y 1.000 571 0% 237 20.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH8 1769 genome.wustl.edu 37 6 38919215 38919215 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001371.2 +1 validated p.R3907W 0.486 194 0% 142 17.6% 0 - possibly_damaging(0.79) tolerated(0.18) neutral(0.352) HMMPfam_Dynein_heavy SAYSD1 55776 genome.wustl.edu 37 6 39073309 39073309 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018322.1 -1 predicted p.A151T 1.000 196 0% 127 20.5% 46 45.6% possibly_damaging(0.915) deleterious(0) deleterious(0.811) HMMPfam_SAYSvFN SAYSD1 55776 genome.wustl.edu 37 6 39082738 39082738 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018322.1 -1 predicted p.A43V 0.535 31 0% 48 12.5% 14 21.4% benign(0.316) tolerated(0.36) neutral(0.119) NULL KCNK5 8645 genome.wustl.edu 37 6 39196873 39196873 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003740.3 -1 reviewed p.G5 0.966 56 0% 67 31.3% 6 16.6% - - - superfamily_SSF81324 KCNK16 83795 genome.wustl.edu 37 6 39284619 39284619 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135105.1 -1 reviewed p.S200 0.003 111 0% 127 29.1% 0 - - - - HMMPfam_Ion_trans_2,superfamily_SSF81324 MOCS1 4337 genome.wustl.edu 37 6 39895156 39895156 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001075098.3 -1 reviewed p.A54 0.000 91 0% 67 28.4% 3 66.6% - - - NULL LRFN2 57497 genome.wustl.edu 37 6 40399926 40399926 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020737.1 -1 provisional p.K309N 0.997 24 0% 17 29.4% 0 - probably_damaging(0.958) deleterious(0.01) deleterious(0.807) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin TSPO2 222642 genome.wustl.edu 37 6 41011405 41011405 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010873.2 +1 validated p.V95I 0.004 197 0% 127 11.8% 0 - benign(0.001) tolerated(0.22) neutral(0.042) HMMPfam_TspO_MBR NFYA 4800 genome.wustl.edu 37 6 41065138 41065138 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002505.4 +1 reviewed p.R345 1.000 444 0% 340 18.2% 21 14.2% - - - NULL TREML1 340205 genome.wustl.edu 37 6 41117500 41117500 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178174.2 -1 provisional p.P260S 0.000 715 0% 339 20.6% 0 - possibly_damaging(0.602) tolerated(0.16) neutral(0.268) NULL PGC 5225 genome.wustl.edu 37 6 41704638 41704638 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002630.3 -1 reviewed p.S373 0.856 93 0% 116 29.3% 0 - - - - HMMPfam_Asp,superfamily_Pept_Aspartic PGC 5225 genome.wustl.edu 37 6 41712253 41712253 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002630.3 -1 reviewed e3-1 0.990 97 0% 112 27.7% 0 - - - - - FRS3 10817 genome.wustl.edu 37 6 41743268 41743268 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006653.3 -1 reviewed p.H48Y 1.000 127 0% 128 23.4% 2 0% benign(0.048) tolerated(0.73) neutral(0.005) HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729 PRICKLE4 29964 genome.wustl.edu 37 6 41753218 41753218 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013397.5 +1 validated p.Q174 0.710 57 0% 66 15.2% 2 0% - - - HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain) USP49 25862 genome.wustl.edu 37 6 41773723 41773723 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018561.3 -1 provisional p.N333 0.927 48 0% 46 19.6% 0 - - - - HMMPfam_UCH,superfamily_Cysteine proteinases BYSL 705 genome.wustl.edu 37 6 41900163 41900163 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004053.3 +1 reviewed p.L345M 1.000 106 0% 99 18.2% 76 38.1% probably_damaging(0.971) tolerated(0.05) deleterious(0.758) HMMPfam_Bystin C6orf132 647024 genome.wustl.edu 37 6 42074177 42074177 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000341865 -1 known p.R491 0.252 43 0% 33 18.2% 8 0% - - - NULL UBR2 23304 genome.wustl.edu 37 6 42604815 42604815 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015255.2 +1 reviewed p.T581A 1.000 371 0% 163 32.5% 11 45.4% benign(0.01) tolerated(0.81) neutral(0.001) NULL KIAA0240 23506 genome.wustl.edu 37 6 42797602 42797602 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015349.1 +1 validated p.L511M 1.000 113 0% 51 23.5% 6 50% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) NULL KIAA0240 23506 genome.wustl.edu 37 6 42832872 42832872 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015349.1 +1 validated p.S976R 0.916 148 0% 50 16% 4 25% benign(0.012) deleterious(0.03) neutral(0.365) NULL GNMT 27232 genome.wustl.edu 37 6 42931364 42931364 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018960.4 +1 reviewed p.L270 1.000 179 0% 155 23.2% 1 100% - - - superfamily_SSF53335 PPP2R5D 5528 genome.wustl.edu 37 6 42974218 42974218 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000230402 +1 known p.S47N 0.999 78 0% 68 22.1% 15 13.3% unknown(0) deleterious(0) - NULL PPP2R5D 5528 genome.wustl.edu 37 6 42977106 42977106 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006245.2 +1 reviewed p.S433I 1.000 122 0% 132 28.8% 76 35.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_B56 CUL7 9820 genome.wustl.edu 37 6 43017156 43017156 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014780.4 -1 reviewed p.A605V 0.001 237 0% 208 18.3% 18 55.5% probably_damaging(0.98) tolerated(0.07) deleterious(0.743) NULL CUL7 9820 genome.wustl.edu 37 6 43018860 43018860 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014780.4 -1 reviewed p.R360H 0.944 165 0% 116 19% 21 47.6% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL CUL7 9820 genome.wustl.edu 37 6 43019484 43019484 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014780.4 -1 reviewed p.L200I 1.000 234 0% 260 21.9% 8 50% probably_damaging(0.971) deleterious(0) deleterious(0.857) NULL KLC4 89953 genome.wustl.edu 37 6 43030683 43030683 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201523.1 +1 validated p.S114I 1.000 57 0% 36 13.9% 19 21% benign(0.134) deleterious(0.04) neutral(0.360) HMMPfam_Rab5-bind,superfamily_TPR-like PTK7 5754 genome.wustl.edu 37 6 43099886 43099886 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002821.3 +1 reviewed p.A315 0.998 99 0% 63 17.5% 41 48.7% - - - HMMSmart_SM00409,superfamily_Immunoglobulin PTK7 5754 genome.wustl.edu 37 6 43111240 43111240 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002821.3 +1 reviewed p.A711 0.016 115 0.9% 77 33.8% 61 42.6% - - - NULL PTK7 5754 genome.wustl.edu 37 6 43112301 43112301 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002821.3 +1 reviewed p.K788N 1.000 146 0% 152 21.7% 109 36.6% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) superfamily_Protein kinase-like (PK-like) CUL9 23113 genome.wustl.edu 37 6 43152226 43152226 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.A60S 0.973 385 0% 275 22.5% 3 0% unknown(0) tolerated(0.29) - NULL CUL9 23113 genome.wustl.edu 37 6 43154799 43154799 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.V451 0.100 189 0% 150 26.7% 2 50% - - - NULL CUL9 23113 genome.wustl.edu 37 6 43172163 43172163 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.R1409W 0.008 290 0.7% 198 20.2% 7 42.8% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL CUL9 23113 genome.wustl.edu 37 6 43182859 43182859 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.L1911M 0.999 98 0% 107 20.6% 12 58.3% possibly_damaging(0.945) tolerated(0.24) neutral(0.427) "superfamily_""Winged helix"" DNA-binding domain" CUL9 23113 genome.wustl.edu 37 6 43188497 43188497 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.L2146I 0.998 59 0% 58 12.1% 15 13.3% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_IBR,HMMSmart_SM00647 CUL9 23113 genome.wustl.edu 37 6 43192067 43192067 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.E2480K 0.415 183 0% 202 25.2% 42 30.9% possibly_damaging(0.918) deleterious(0) deleterious(0.813) NULL CUL9 23113 genome.wustl.edu 37 6 43192134 43192134 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015089.2 +1 validated p.T2502I 0.862 345 0% 333 21% 33 21.2% benign(0.232) deleterious(0) neutral(0.468) NULL C6orf108 10591 genome.wustl.edu 37 6 43194109 43194109 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006443.2 -1 reviewed p.R74M 0.006 40 0% 68 17.6% 201 45.2% probably_damaging(0.961) deleterious(0.05) deleterious(0.750) HMMPfam_Nuc_deoxyrib_tr,superfamily_SSF52309 TTBK1 84630 genome.wustl.edu 37 6 43230557 43230557 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032538.1 +1 validated p.S485 0.369 12 0% 20 30% 3 0% - - - NULL ZNF318 24149 genome.wustl.edu 37 6 43310435 43310435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014345.2 -1 validated p.M1085I 1.000 591 0.2% 181 21% 0 - possibly_damaging(0.786) deleterious(0.05) deleterious(0.640) HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers DLK2 65989 genome.wustl.edu 37 6 43418359 43418359 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023932.2 -1 validated p.E357A 1.000 30 0% 18 44.4% 3 33.3% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL DLK2 65989 genome.wustl.edu 37 6 43419737 43419737 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023932.2 -1 validated p.C119 0.943 149 0% 181 23.2% 0 - - - - HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin POLR1C 9533 genome.wustl.edu 37 6 43497009 43497009 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004875.2 +1 validated p.A315 0.000 317 0% 255 22% 4 50% - - - HMMSmart_RPOLD XPO5 57510 genome.wustl.edu 37 6 43540292 43540292 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020750.2 -1 validated p.R84Q 0.993 586 0% 454 22.5% 14 50% possibly_damaging(0.545) tolerated(0.95) neutral(0.185) superfamily_ARM repeat MAD2L1BP 9587 genome.wustl.edu 37 6 43607888 43607888 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003690.1 +1 reviewed p.P180L 1.000 66 0% 62 19.4% 51 35.2% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) HMMPfam_DUF1135 RSPH9 221421 genome.wustl.edu 37 6 43638602 43638602 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152732.3 +1 provisional p.F249 1.000 96 0% 74 16.2% 0 - - - - NULL TMEM63B 55362 genome.wustl.edu 37 6 44115180 44115180 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018426.1 +1 validated p.M310I 1.000 194 0% 220 23.6% 39 43.5% benign(0.119) tolerated(0.17) neutral(0.068) NULL TMEM63B 55362 genome.wustl.edu 37 6 44121509 44121509 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018426.1 +1 validated p.A680D 1.000 52 0% 75 25.3% 34 41.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF221 TMEM63B 55362 genome.wustl.edu 37 6 44122456 44122456 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018426.1 +1 validated p.S779T 1.000 50 0% 58 22.4% 57 28% benign(0.026) tolerated(0.19) neutral(0.051) NULL CAPN11 11131 genome.wustl.edu 37 6 44141019 44141019 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007058.3 +1 reviewed p.G243* 1.000 104 0% 59 22% 0 - - - - HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001 HSP90AB1 3326 genome.wustl.edu 37 6 44217568 44217568 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007355.2 +1 provisional p.H171Y 0.999 602 0% 525 24.4% 387 0.7% benign(0.003) deleterious(0.03) neutral(0.364) HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90AB1 3326 genome.wustl.edu 37 6 44217841 44217841 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007355.2 +1 provisional p.E200* 1.000 231 0% 249 20.5% 379 0.7% - - - superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HSP90 HSP90AB1 3326 genome.wustl.edu 37 6 44221034 44221034 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007355.2 +1 provisional p.A662T 1.000 367 0% 370 21.6% 1698 1.1% possibly_damaging(0.706) deleterious(0) deleterious(0.699) HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183) NFKBIE 4794 genome.wustl.edu 37 6 44229417 44229417 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004556.2 -1 validated p.E352* 0.991 61 0% 75 13.3% 60 5% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK NFKBIE 4794 genome.wustl.edu 37 6 44230330 44230330 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004556.2 -1 validated p.Q284H 1.000 141 0% 197 19.3% 53 49% probably_damaging(0.981) tolerated(0.32) neutral(0.450) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK TCTE1 202500 genome.wustl.edu 37 6 44253840 44253840 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182539.3 -1 validated p.G236D 0.879 112 0% 144 17.4% 0 - probably_damaging(0.998) tolerated(0.33) deleterious(0.498) superfamily_SSF52047 TCTE1 202500 genome.wustl.edu 37 6 44255254 44255254 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000412569 -1 known p.E103D 0.001 57 0% 74 27% 0 - - - - NULL SPATS1 221409 genome.wustl.edu 37 6 44344771 44344771 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145026.3 +1 validated e8-1 0.998 247 0% 180 13.3% 0 - - - - - CDC5L 988 genome.wustl.edu 37 6 44393888 44393888 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001253.2 +1 reviewed p.A540S 1.000 326 0% 88 27.3% 33 39.3% benign(0.006) tolerated(0.11) neutral(0.272) NULL SUPT3H 8464 genome.wustl.edu 37 6 45332944 45332944 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003599.2 -1 provisional p.S32N 1.000 238 0% 152 20.4% 7 42.8% possibly_damaging(0.925) tolerated(0.24) neutral(0.411) HMMPfam_TFIID-18kDa,superfamily_Histone-fold CLIC5 53405 genome.wustl.edu 37 6 45870921 45870921 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114086.1 -1 validated p.N379 0.889 164 0% 70 21.4% 7 71.4% - - - superfamily_Glutathione S-transferase (GST) C-terminal domain SLC25A27 9481 genome.wustl.edu 37 6 46636496 46636496 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004277.3 +1 reviewed p.L224F 0.932 535 0% 388 23.5% 0 - benign(0.141) tolerated(0.17) neutral(0.071) superfamily_Mitochondrial carrier TDRD6 221400 genome.wustl.edu 37 6 46659432 46659432 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010870.2 +1 validated p.L1189 0.000 48 0% 83 22.9% 0 - - - - NULL TDRD6 221400 genome.wustl.edu 37 6 46661339 46661339 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010870.2 +1 validated p.E1825G 0.014 70 0% 100 23% 0 - possibly_damaging(0.868) deleterious(0.01) deleterious(0.743) NULL MEP1A 4224 genome.wustl.edu 37 6 46793209 46793209 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005588.2 +1 validated p.L253M 1.000 307 0% 113 23% 0 - probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_Astacin,superfamily_SSF55486 MEP1A 4224 genome.wustl.edu 37 6 46803219 46803219 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005588.2 +1 validated p.P673S 1.000 101 0% 32 12.5% 1 0% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMSmart_EGF,superfamily_SSF57196 GPR110 266977 genome.wustl.edu 37 6 46977303 46977303 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153840.2 -1 validated p.R623H 1.000 288 0% 74 13.5% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_2 GPR110 266977 genome.wustl.edu 37 6 46988498 46988498 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153840.2 -1 validated p.G194C 0.993 358 0% 105 19% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_SEA,superfamily_SEA domain GPR115 221393 genome.wustl.edu 37 6 47682010 47682010 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153838.3 +1 validated p.R343 0.001 203 0% 45 42.2% 0 - - - - NULL GPR115 221393 genome.wustl.edu 37 6 47682469 47682469 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153838.3 +1 validated p.L496F 1.000 351 0% 106 26.4% 0 - probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_7tm_2 PTCHD4 442213 genome.wustl.edu 37 6 47847364 47847364 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013732.3 -1 validated p.C389R 1.000 284 0% 106 32.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Patched MUT 4594 genome.wustl.edu 37 6 49421379 49421379 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000255.3 -1 reviewed p.E334D 1.000 219 0% 137 23.4% 10 10% benign(0.003) tolerated(0.37) neutral(0.019) HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes GLYATL3 389396 genome.wustl.edu 37 6 49485269 49485269 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010904.1 +1 validated p.G105W 1.000 407 0% 176 19.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat) CRISP3 10321 genome.wustl.edu 37 6 49700925 49700925 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006061.1 -1 provisional p.V168 0.981 375 0% 202 21.8% 0 - - - - HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular,PatternScan_CRISP_2 CRISP3 10321 genome.wustl.edu 37 6 49703255 49703255 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006061.1 -1 provisional p.C80Y 0.091 244 0% 124 19.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular TFAP2D 83741 genome.wustl.edu 37 6 50686807 50686807 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172238.3 +1 validated p.S181Y 1.000 477 0% 587 24% 0 - possibly_damaging(0.681) tolerated(0.08) deleterious(0.543) NULL TFAP2D 83741 genome.wustl.edu 37 6 50696613 50696613 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172238.3 +1 validated p.P215T 1.000 218 0% 169 12.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TF_AP-2 TFAP2B 7021 genome.wustl.edu 37 6 50807997 50807997 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003221.3 +1 reviewed p.L357M 1.000 168 0% 213 25.8% 0 - probably_damaging(0.996) deleterious(0.05) deleterious(0.807) HMMPfam_TF_AP-2 TFAP2B 7021 genome.wustl.edu 37 6 50810933 50810933 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003221.3 +1 reviewed p.G404D 1.000 43 0% 53 28.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_TF_AP-2 PKHD1 5314 genome.wustl.edu 37 6 51656168 51656168 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138694.3 -1 reviewed p.R2769I 0.997 243 0% 56 23.2% 0 - probably_damaging(0.976) tolerated(0.16) deleterious(0.477) HMMPfam_G8 PKHD1 5314 genome.wustl.edu 37 6 51720701 51720701 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138694.3 -1 reviewed p.R2634K 0.015 261 0% 160 20% 0 - benign(0) tolerated(0.13) neutral(0.253) NULL PKHD1 5314 genome.wustl.edu 37 6 51889775 51889775 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138694.3 -1 reviewed p.Q1611H 0.948 221 0% 115 19.1% 1 0% benign(0.007) tolerated(0.07) neutral(0.319) HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains PKHD1 5314 genome.wustl.edu 37 6 51913319 51913319 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138694.3 -1 reviewed p.R793H 0.111 195 0.5% 46 17.4% 0 - benign(0.006) tolerated(0.53) neutral(0.007) NULL EFHC1 114327 genome.wustl.edu 37 6 52288771 52288771 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018100.3 +1 reviewed p.L31 0.177 71 0% 58 17.2% 6 33.3% - - - NULL FBXO9 26268 genome.wustl.edu 37 6 52938287 52938287 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012347.4 +1 reviewed p.L43 0.999 258 0% 208 28.8% 21 42.8% - - - NULL FBXO9 26268 genome.wustl.edu 37 6 52960341 52960341 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012347.4 +1 reviewed p.R372C 1.000 311 0% 125 26.4% 70 37.1% benign(0.094) deleterious(0.01) neutral(0.413) superfamily_F-box domain GCM1 8521 genome.wustl.edu 37 6 52999013 52999013 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003643.3 -1 reviewed p.R62H 1.000 240 0.4% 137 26.3% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_GCM,superfamily_GCM_motif GCLC 2729 genome.wustl.edu 37 6 53365106 53365106 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001498.2 -1 reviewed p.S507N 0.999 246 0% 57 22.8% 23 39.1% benign(0) tolerated(0.54) neutral(0.007) HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase GCLC 2729 genome.wustl.edu 37 6 53372324 53372324 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001498.2 -1 reviewed p.I346 0.998 466 0% 213 23.9% 8 37.5% - - - HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase GCLC 2729 genome.wustl.edu 37 6 53385601 53385601 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001498.2 -1 reviewed p.L141F 0.997 316 0% 132 24.2% 8 50% possibly_damaging(0.455) tolerated(0.06) deleterious(0.472) superfamily_Glutamine synthetase/guanido kinase TINAG 27283 genome.wustl.edu 37 6 54191620 54191620 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014464.3 +1 validated p.S177I 1.000 410 0.2% 143 14.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Cysteine proteinases BMP5 653 genome.wustl.edu 37 6 55638953 55638953 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021073.2 -1 reviewed p.A307 0.898 558 0% 135 20.7% 0 - - - - NULL COL21A1 81578 genome.wustl.edu 37 6 56031716 56031716 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030820.3 -1 reviewed p.E422D 1.000 491 0% 276 23.2% 1 0% possibly_damaging(0.919) tolerated(0.55) neutral(0.377) NULL DST 667 genome.wustl.edu 37 6 56327949 56327949 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.L5008 1.000 438 0.2% 281 21.7% 15 6.6% - - - NULL DST 667 genome.wustl.edu 37 6 56347612 56347612 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.E4468* 1.000 128 0% 109 27.5% 6 0% - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat DST 667 genome.wustl.edu 37 6 56417083 56417083 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.E2880* 0.366 243 0% 124 21.8% 0 - - - - HMMPfam_Spectrin,HMMSmart_SM00150 DST 667 genome.wustl.edu 37 6 56417094 56417094 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.S2876I 0.001 244 0% 131 19.1% 0 - possibly_damaging(0.684) - - HMMPfam_Spectrin,HMMSmart_SM00150 DST 667 genome.wustl.edu 37 6 56417415 56417415 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.R2769Q 1.000 224 0% 110 23.6% 0 - probably_damaging(1) - - HMMSmart_SM00150,superfamily_Spectrin repeat DST 667 genome.wustl.edu 37 6 56417736 56417736 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.S2662Y 0.980 249 0% 133 16.5% 0 - benign(0.035) - - NULL DST 667 genome.wustl.edu 37 6 56417821 56417821 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.V2634I 0.056 257 0% 145 22.8% 0 - benign(0.097) - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat DST 667 genome.wustl.edu 37 6 56426959 56426959 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.T2059N 0.996 422 0% 244 20.1% 1 0% benign(0.081) - - NULL DST 667 genome.wustl.edu 37 6 56470519 56470519 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000370769 -1 known p.L2758 0.029 200 0% 47 19.1% 0 - - - - NULL DST 667 genome.wustl.edu 37 6 56481435 56481435 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001723.5 -1 reviewed p.A2277D 1.000 120 0% 35 22.9% 0 - probably_damaging(0.979) tolerated(0.18) deleterious(0.478) HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399 DST 667 genome.wustl.edu 37 6 56500438 56500438 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.C508 1.000 455 0% 350 14.3% 0 - - - - superfamily_Spectrin repeat DST 667 genome.wustl.edu 37 6 56507422 56507422 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015548.4 -1 reviewed p.H55 0.997 223 0% 104 23.1% 0 - - - - NULL KIAA1586 57691 genome.wustl.edu 37 6 56918003 56918003 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020931.2 +1 validated p.H236Y 0.000 69 0% 56 23.2% 3 33.3% possibly_damaging(0.698) deleterious(0.04) deleterious(0.600) NULL ZNF451 26036 genome.wustl.edu 37 6 57012381 57012381 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031623.2 +1 validated p.C500R 1.000 168 0% 72 25% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF451 26036 genome.wustl.edu 37 6 57012903 57012903 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031623.2 +1 validated p.L674I 1.000 109 0% 43 32.6% 2 50% probably_damaging(0.993) tolerated(0.08) deleterious(0.750) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF451 26036 genome.wustl.edu 37 6 57013193 57013193 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031623.2 +1 validated p.T770 0.220 297 0% 90 15.6% 5 40% - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF451 26036 genome.wustl.edu 37 6 57015558 57015558 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031623.2 +1 validated p.T884A 1.000 360 0% 156 29.5% 6 33.3% probably_damaging(0.97) tolerated(0.06) deleterious(0.735) NULL ZNF451 26036 genome.wustl.edu 37 6 57018781 57018781 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031623.2 +1 validated p.N1002 1.000 185 0% 83 21.7% 3 33.3% - - - NULL EYS 346007 genome.wustl.edu 37 6 64430947 64430947 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142800.1 -1 reviewed p.L2994 0.998 265 0% 67 29.9% 0 - - - - HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 EYS 346007 genome.wustl.edu 37 6 64708980 64708980 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398580 -1 known p.P46L 0.000 407 0% 233 21% 0 - - - - superfamily_Concanavalin A-like lectins/glucanases EYS 346007 genome.wustl.edu 37 6 64940539 64940539 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142800.1 -1 reviewed p.V2124M 0.000 145 0% 37 21.6% 0 - probably_damaging(0.989) - - HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181 EYS 346007 genome.wustl.edu 37 6 65300236 65300236 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142800.1 -1 reviewed p.L1842I 0.011 231 0% 89 20.2% 0 - possibly_damaging(0.615) - - superfamily_Concanavalin A-like lectins/glucanases EYS 346007 genome.wustl.edu 37 6 66063410 66063410 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142800.1 -1 reviewed p.G467D 0.009 310 0% 72 25% 0 - benign(0.019) deleterious(0.04) neutral(0.350) NULL EYS 346007 genome.wustl.edu 37 6 66205257 66205257 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000471279 -1 known e1-1 0.000 200 0% 84 19% 0 - - - - - BAI3 577 genome.wustl.edu 37 6 70070805 70070805 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001704.2 +1 reviewed p.G1214* 1.000 263 0% 83 18.1% 0 - - - - NULL COL19A1 1310 genome.wustl.edu 37 6 70639407 70639407 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001858.4 +1 reviewed p.R161* 1.000 332 0.3% 109 14.7% 0 - - - - HMMSmart_TSPN,superfamily_ConA_like_lec_gl COL19A1 1310 genome.wustl.edu 37 6 70856775 70856775 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001858.4 +1 reviewed p.G629 0.045 194 0% 52 26.9% 0 - - - - HMMPfam_Collagen COL9A1 1297 genome.wustl.edu 37 6 70935713 70935713 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001851.4 -1 reviewed e37-1 1.000 106 0% 94 19.1% 0 - - - - - COL9A1 1297 genome.wustl.edu 37 6 70963116 70963116 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001851.4 -1 reviewed p.P579H 1.000 291 0.3% 75 26.7% 13 61.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Collagen COL9A1 1297 genome.wustl.edu 37 6 70964894 70964894 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001851.4 -1 reviewed p.A524T 0.205 232 0% 79 30.4% 2 50% benign(0) tolerated(0.39) neutral(0.016) HMMPfam_Collagen COL9A1 1297 genome.wustl.edu 37 6 70970387 70970387 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001851.4 -1 reviewed p.T474 0.802 306 0.7% 145 24.8% 0 - - - - HMMPfam_Collagen FAM135A 57579 genome.wustl.edu 37 6 71185383 71185383 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105531.2 +1 validated p.E105D 0.999 286 0% 68 26.5% 3 33.3% benign(0.282) tolerated(0.49) neutral(0.097) NULL FAM135A 57579 genome.wustl.edu 37 6 71236124 71236124 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105531.2 +1 validated p.N917H 0.000 337 0% 141 22% 8 75% benign(0.186) tolerated(0.29) neutral(0.046) NULL SMAP1 60682 genome.wustl.edu 37 6 71546716 71546716 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001044305.1 +1 reviewed p.D217N 1.000 149 0% 71 18.3% 32 37.5% probably_damaging(1) tolerated(0.12) deleterious(0.760) NULL RIMS1 22999 genome.wustl.edu 37 6 72889319 72889319 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014989.4 +1 reviewed p.I171 0.965 110 0% 118 16.9% 0 - - - - superfamily_FYVE/PHD zinc finger RIMS1 22999 genome.wustl.edu 37 6 72889487 72889487 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014989.4 +1 reviewed p.A227 0.989 73 0% 77 15.6% 0 - - - - NULL RIMS1 22999 genome.wustl.edu 37 6 72892258 72892258 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014989.4 +1 reviewed p.A362T 1.000 35 0% 34 32.4% 0 - possibly_damaging(0.753) deleterious(0.01) deleterious(0.682) NULL KCNQ5 56479 genome.wustl.edu 37 6 73904619 73904619 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019842.3 +1 reviewed p.P761T 0.998 544 0.2% 192 19.3% 0 - benign(0) deleterious(0.01) neutral(0.406) NULL DDX43 55510 genome.wustl.edu 37 6 74116094 74116094 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018665.2 +1 reviewed p.A272V 0.995 314 0% 385 15.3% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540 MTO1 25821 genome.wustl.edu 37 6 74192333 74192333 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123226.1 +1 reviewed p.L583 0.000 134 0% 136 29.4% 3 0% - - - NULL CD109 135228 genome.wustl.edu 37 6 74473403 74473403 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133493.3 +1 reviewed p.A368T 0.998 410 0% 350 18% 0 - benign(0.354) tolerated(0.17) neutral(0.171) NULL CD109 135228 genome.wustl.edu 37 6 74497087 74497087 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133493.3 +1 reviewed p.R823M 0.689 280 0% 168 16.7% 0 - benign(0.026) tolerated(0.06) neutral(0.324) NULL COL12A1 1303 genome.wustl.edu 37 6 75811764 75811764 + Missense_Mutation SNP C C T rs186328815 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004370.5 -1 reviewed p.R2807H 1.000 224 0.9% 151 20.5% 23 34.7% unknown(0) - - NULL COL12A1 1303 genome.wustl.edu 37 6 75831069 75831069 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004370.5 -1 reviewed p.F2345 1.000 146 0% 43 27.9% 9 66.6% - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like COL12A1 1303 genome.wustl.edu 37 6 75834935 75834935 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004370.5 -1 reviewed p.H2172R 1.000 336 0% 82 20.7% 12 33.3% benign(0.268) - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III COL12A1 1303 genome.wustl.edu 37 6 75839898 75839898 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004370.5 -1 reviewed p.S2040N 1.000 187 0% 54 24.1% 6 33.3% probably_damaging(0.994) - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SENP6 26054 genome.wustl.edu 37 6 76312252 76312252 + Silent SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015571.2 +1 validated p.G4 1.000 99 0% 119 20.2% 4 25% - - - NULL MYO6 4646 genome.wustl.edu 37 6 76558092 76558092 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004999.3 +1 reviewed p.D308Y 1.000 428 0% 195 27.7% 5 40% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO6 4646 genome.wustl.edu 37 6 76624712 76624712 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004999.3 +1 reviewed p.Q1281* 1.000 80 0% 63 19% 39 41% - - - NULL HTR1B 3351 genome.wustl.edu 37 6 78172383 78172383 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000863.1 -1 provisional p.R246 0.104 87 0% 136 10.3% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PHIP 55023 genome.wustl.edu 37 6 79650691 79650691 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017934.5 -1 validated p.L1729I 1.000 579 0.3% 223 22% 3 0% benign(0.051) tolerated(0.36) neutral(0.023) NULL PHIP 55023 genome.wustl.edu 37 6 79727063 79727063 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017934.5 -1 validated p.R379M 1.000 75 0% 32 12.5% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40 HMGN3 9324 genome.wustl.edu 37 6 79918265 79918265 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004242.2 -1 reviewed p.A32V 1.000 252 0% 104 19.2% 317 39.7% possibly_damaging(0.86) - - HMMPfam_HMG14_17,HMMSmart_SM00527,PatternScan_HMG14_17 TTK 7272 genome.wustl.edu 37 6 80718110 80718110 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003318.4 +1 reviewed p.E124* 1.000 164 0% 239 24.3% 2 0% - - - NULL IBTK 25998 genome.wustl.edu 37 6 82937014 82937014 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015525.2 -1 reviewed p.V183 1.000 150 0% 106 18.9% 4 25% - - - superfamily_RCC1/BLIP-II DOPEY1 23033 genome.wustl.edu 37 6 83819954 83819954 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015018.2 +1 validated p.T201M 1.000 240 0% 143 28% 0 - benign(0.11) tolerated(0.19) neutral(0.058) HMMPfam_Dopey_N DOPEY1 23033 genome.wustl.edu 37 6 83845504 83845504 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015018.2 +1 validated p.R1013C 1.000 184 0% 63 19% 1 100% probably_damaging(1) tolerated(0.13) deleterious(0.752) NULL DOPEY1 23033 genome.wustl.edu 37 6 83847218 83847218 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015018.2 +1 validated p.V1153L 0.961 287 0% 79 15.2% 1 0% benign(0.263) tolerated(0.06) neutral(0.350) NULL DOPEY1 23033 genome.wustl.edu 37 6 83847774 83847774 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015018.2 +1 validated p.G1338E 1.000 190 0% 42 31% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL DOPEY1 23033 genome.wustl.edu 37 6 83849819 83849819 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015018.2 +1 validated p.Q1741K 1.000 438 0% 165 25.5% 5 20% probably_damaging(0.988) tolerated(0.16) deleterious(0.497) NULL DOPEY1 23033 genome.wustl.edu 37 6 83872582 83872582 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015018.2 +1 validated p.R2346* 1.000 419 0% 155 18.7% 21 23.8% - - - NULL SNAP91 9892 genome.wustl.edu 37 6 84371296 84371296 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014841.2 -1 validated p.R126H 1.000 216 0% 128 29.7% 0 - probably_damaging(0.975) deleterious(0.01) deleterious(0.823) superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273 MRAP2 112609 genome.wustl.edu 37 6 84772645 84772645 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138409.2 +1 validated p.A54V 1.000 1058 0% 588 11.9% 5 80% possibly_damaging(0.498) deleterious(0.03) deleterious(0.531) NULL MRAP2 112609 genome.wustl.edu 37 6 84799119 84799119 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138409.2 +1 validated p.E179D 0.986 205 0.5% 60 25% 5 0% benign(0.016) deleterious(0) neutral(0.445) NULL KIAA1009 22832 genome.wustl.edu 37 6 84884976 84884976 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014895.2 -1 validated p.S585Y 0.083 296 0.3% 193 21.2% 2 50% benign(0.123) tolerated(0.1) neutral(0.296) NULL KIAA1009 22832 genome.wustl.edu 37 6 84896292 84896292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014895.2 -1 validated p.P387S 0.462 379 0% 416 24.5% 2 50% possibly_damaging(0.741) deleterious(0) deleterious(0.716) NULL KIAA1009 22832 genome.wustl.edu 37 6 84904604 84904604 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014895.2 -1 validated p.S342F 1.000 518 0% 560 23.2% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TBX18 9096 genome.wustl.edu 37 6 85446681 85446681 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080508.1 -1 provisional p.G516S 1.000 222 0% 114 18.4% 4 75% benign(0.013) tolerated(0.86) neutral(0.001) NULL TBX18 9096 genome.wustl.edu 37 6 85448256 85448256 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080508.1 -1 provisional p.R353Q 1.000 313 0% 106 20.8% 20 45% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TBX18 9096 genome.wustl.edu 37 6 85457662 85457662 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080508.1 -1 provisional p.T305 0.975 282 0% 123 22% 11 18.1% - - - HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd TBX18 9096 genome.wustl.edu 37 6 85457756 85457756 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080508.1 -1 provisional p.R274H 1.000 212 0% 89 28.1% 14 57.1% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd TBX18 9096 genome.wustl.edu 37 6 85466570 85466570 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080508.1 -1 provisional p.S206L 1.000 146 0% 118 20.3% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd SNX14 57231 genome.wustl.edu 37 6 86227518 86227518 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153816.3 -1 reviewed p.P742S 1.000 801 0% 390 23.3% 67 37.3% probably_damaging(0.985) tolerated(0.11) deleterious(0.704) NULL SNX14 57231 genome.wustl.edu 37 6 86227751 86227751 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153816.3 -1 reviewed p.S708F 1.000 228 0% 166 25.9% 38 47.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ZNF292 23036 genome.wustl.edu 37 6 87969691 87969691 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015021.1 +1 validated p.R2115Q 1.000 229 0.4% 84 21.4% 8 0% benign(0.299) tolerated(0.12) neutral(0.353) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers GJB7 375519 genome.wustl.edu 37 6 87994134 87994134 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198568.2 -1 validated p.V166A 1.000 241 0% 79 26.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC C6orf163 206412 genome.wustl.edu 37 6 88058529 88058529 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000388923 +1 known e2-1 1.000 209 0% 90 16.7% 0 - - - - - ORC3 23595 genome.wustl.edu 37 6 88362959 88362959 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181837.1 +1 reviewed p.S503N 0.949 186 0% 88 12.5% 37 32.4% benign(0) tolerated(0.53) neutral(0.007) NULL SPACA1 81833 genome.wustl.edu 37 6 88769170 88769170 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030960.2 +1 reviewed e5-1 1.000 133 0% 121 24.8% 0 - - - - - PM20D2 135293 genome.wustl.edu 37 6 89871931 89871931 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010853.1 +1 validated p.E420D 1.000 138 0% 84 25% 6 66.6% benign(0.006) tolerated(0.24) neutral(0.037) NULL ANKRD6 22881 genome.wustl.edu 37 6 90340259 90340259 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014942.3 +1 validated p.L569I 0.028 65 0% 44 27.3% 12 50% benign(0.15) tolerated(0.3) neutral(0.042) NULL MDN1 23195 genome.wustl.edu 37 6 90390370 90390370 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014611.1 -1 provisional p.C4068Y 0.983 87 0% 51 11.8% 2 0% benign(0.049) deleterious(0) neutral(0.448) NULL MDN1 23195 genome.wustl.edu 37 6 90397807 90397807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014611.1 -1 provisional p.A3782V 0.990 277 0% 82 18.3% 1 100% probably_damaging(0.977) tolerated(0.22) neutral(0.461) NULL MDN1 23195 genome.wustl.edu 37 6 90411358 90411358 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014611.1 -1 provisional p.Q2782H 1.000 140 0% 64 21.9% 2 0% benign(0.025) tolerated(0.13) neutral(0.254) NULL MDN1 23195 genome.wustl.edu 37 6 90499533 90499533 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014611.1 -1 provisional p.L399P 1.000 82 0% 33 21.2% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases MDN1 23195 genome.wustl.edu 37 6 90513188 90513188 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014611.1 -1 provisional p.R63H 1.000 172 0% 78 17.9% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL GJA10 84694 genome.wustl.edu 37 6 90604210 90604210 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032602.1 +1 validated p.G8D 1.000 166 0% 105 23.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Connexin GJA10 84694 genome.wustl.edu 37 6 90604675 90604675 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032602.1 +1 validated p.T163I 1.000 311 0% 175 25.7% 0 - probably_damaging(1) tolerated(0.49) deleterious(0.510) NULL BACH2 60468 genome.wustl.edu 37 6 90642208 90642208 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021813.2 -1 validated p.S815 1.000 304 0% 240 19.2% 0 - - - - NULL BACH2 60468 genome.wustl.edu 37 6 90647915 90647915 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021813.2 -1 validated p.R664H 1.000 184 0% 124 22.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1 BACH2 60468 genome.wustl.edu 37 6 90660379 90660379 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021813.2 -1 validated p.H482 0.978 84 0% 62 27.4% 0 - - - - NULL BACH2 60468 genome.wustl.edu 37 6 90660720 90660720 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021813.2 -1 validated p.A369T 0.972 10 0% 17 41.2% 0 - possibly_damaging(0.923) tolerated(0.13) deleterious(0.625) NULL BACH2 60468 genome.wustl.edu 37 6 90661230 90661230 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021813.2 -1 validated p.V199I 0.029 230 0% 220 20.9% 0 - benign(0.249) tolerated(0.43) neutral(0.039) NULL EPHA7 2045 genome.wustl.edu 37 6 93956553 93956553 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004440.3 -1 reviewed p.R895 1.000 437 0% 159 16.4% 1 0% - - - superfamily_Protein kinase-like (PK-like) EPHA7 2045 genome.wustl.edu 37 6 93973633 93973633 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004440.3 -1 reviewed p.R581 1.000 333 0% 102 12.7% 4 0% - - - NULL EPHA7 2045 genome.wustl.edu 37 6 94068083 94068083 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004440.3 -1 reviewed p.C293 1.000 221 0% 87 20.7% 0 - - - - superfamily_Growth factor receptor domain MANEA 79694 genome.wustl.edu 37 6 96034601 96034601 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024641.2 +1 validated p.L96 0.142 268 0% 221 28.5% 6 50% - - - NULL KLHL32 114792 genome.wustl.edu 37 6 97561844 97561844 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052904.3 +1 validated p.I271 1.000 137 0% 64 23.4% 0 - - - - superfamily_Galactose oxidase central domain FBXL4 26235 genome.wustl.edu 37 6 99353373 99353373 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012160.3 -1 reviewed p.C344 0.981 351 0% 229 18.8% 16 31.2% - - - superfamily_SSF52047 COQ3 51805 genome.wustl.edu 37 6 99817597 99817597 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017421.3 -1 validated p.A330D 1.000 300 0% 129 23.3% 35 54.2% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL SIM1 6492 genome.wustl.edu 37 6 100895255 100895255 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005068.2 -1 reviewed p.R296M 1.000 187 0% 223 16.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PAC,HMMPfam_PAS_3,superfamily_SSF55785 SIM1 6492 genome.wustl.edu 37 6 100898153 100898153 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005068.2 -1 reviewed p.G113D 1.000 134 0% 125 25.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785 SIM1 6492 genome.wustl.edu 37 6 100911231 100911231 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005068.2 -1 reviewed p.D38 1.000 434 0% 577 22.2% 0 - - - - HMMPfam_HLH,HMMSmart_HLH ASCC3 10973 genome.wustl.edu 37 6 100957933 100957933 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006828.2 -1 validated p.D2112 1.000 281 0% 366 26.8% 52 42.3% - - - HMMPfam_Sec63,HMMSmart_SEC63 GRIK2 2898 genome.wustl.edu 37 6 102372552 102372552 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021956.4 +1 reviewed p.L609I 1.000 397 0% 180 14.4% 0 - benign(0.149) tolerated(0.15) neutral(0.254) HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II PREP 5550 genome.wustl.edu 37 6 105729749 105729749 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002726.3 -1 reviewed p.L570 0.999 204 0% 135 27.4% 38 42.1% - - - HMMPfam_Peptidase_S9,superfamily_SSF53474 PREP 5550 genome.wustl.edu 37 6 105845745 105845745 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002726.3 -1 reviewed p.D35N 1.000 497 0.2% 461 21.5% 7 57.1% possibly_damaging(0.453) tolerated(0.13) neutral(0.401) HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N AIM1 202 genome.wustl.edu 37 6 106968995 106968995 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001624.2 +1 validated p.L896 0.000 132 0% 98 24.5% 2 0% - - - NULL AIM1 202 genome.wustl.edu 37 6 106973043 106973043 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001624.2 +1 validated p.P1019 0.998 537 0% 318 26.1% 1 100% - - - NULL AIM1 202 genome.wustl.edu 37 6 107009348 107009348 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001624.2 +1 validated p.I1629 0.917 307 0% 115 11.3% 9 0% - - - HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,superfamily_RicinB_like RTN4IP1 84816 genome.wustl.edu 37 6 107069324 107069324 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032730.4 -1 reviewed p.E157D 1.000 315 0% 205 23.4% 15 33.3% probably_damaging(0.995) tolerated(0.08) deleterious(0.758) superfamily_GroES-like C6orf203 51250 genome.wustl.edu 37 6 107361333 107361333 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142470.1 +1 validated p.E128D 0.987 349 0% 246 15.4% 45 17.7% benign(0.016) tolerated(0.14) neutral(0.250) NULL PDSS2 57107 genome.wustl.edu 37 6 107533333 107533333 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020381.3 -1 reviewed p.H286Y 1.000 314 0% 105 21.9% 10 40% possibly_damaging(0.512) deleterious(0) deleterious(0.617) superfamily_Terpenoid synthases PDSS2 57107 genome.wustl.edu 37 6 107595268 107595268 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020381.3 -1 reviewed p.A199T 1.000 226 0% 78 23.1% 19 42.1% unknown(0) deleterious(0) - superfamily_Terpenoid synthases SEC63 11231 genome.wustl.edu 37 6 108218910 108218910 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007214.4 -1 reviewed p.N461 1.000 380 0% 118 29.7% 35 25.7% - - - HMMPfam_Sec63,HMMSmart_SEC63 NR2E1 7101 genome.wustl.edu 37 6 108499427 108499427 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003269.3 +1 validated p.T208 0.671 241 0% 269 22.3% 0 - - - - HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain ARMC2 84071 genome.wustl.edu 37 6 109274289 109274289 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032131.4 +1 validated p.N550 0.993 249 0% 281 20.3% 0 - - - - superfamily_ARM-type_fold ARMC2 84071 genome.wustl.edu 37 6 109285418 109285418 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032131.4 +1 validated p.H730Y 1.000 527 0% 282 23.4% 1 0% possibly_damaging(0.895) tolerated(0.06) deleterious(0.675) superfamily_ARM-type_fold CEP57L1 285753 genome.wustl.edu 37 6 109471324 109471324 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083535.1 +1 validated p.I115K 1.000 185 0% 64 29.7% 5 0% benign(0.313) deleterious(0) deleterious(0.542) NULL PPIL6 285755 genome.wustl.edu 37 6 109714039 109714039 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173672.4 -1 validated p.P309H 0.001 577 0.2% 372 29.8% 13 53.8% possibly_damaging(0.519) deleterious(0.03) deleterious(0.539) HMMPfam_Pro_isomerase SMPD2 6610 genome.wustl.edu 37 6 109764779 109764779 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003080.2 +1 validated p.L315M 0.039 183 0% 193 24.4% 56 30.3% benign(0.013) tolerated(0.18) neutral(0.057) NULL MICAL1 64780 genome.wustl.edu 37 6 109767902 109767902 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022765.3 -1 validated p.S767 0.001 472 0% 447 23.3% 32 15.6% - - - NULL ZBTB24 9841 genome.wustl.edu 37 6 109802746 109802746 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014797.2 -1 validated p.R162W 1.000 493 0% 725 23.2% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AT_hook AKD1 221264 genome.wustl.edu 37 6 109827651 109827651 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000470564 -1 known p.S414N 0.999 488 0% 290 22.1% 0 - - - - HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases AKD1 221264 genome.wustl.edu 37 6 109995409 109995409 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145128.2 -1 provisional p.R58H 0.879 142 0% 81 14.8% 5 40% probably_damaging(1) tolerated(0.25) deleterious(0.537) HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC22A16 85413 genome.wustl.edu 37 6 110746237 110746237 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033125.2 -1 provisional p.P525S 1.000 262 0.4% 117 25.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_MFS general substrate transporter CDK19 23097 genome.wustl.edu 37 6 110959861 110959861 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015076.3 -1 reviewed p.V169I 1.000 385 0% 481 16.6% 3 33.3% probably_damaging(0.993) tolerated(0.23) deleterious(0.491) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase AMD1 262 genome.wustl.edu 37 6 111214224 111214224 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001634.4 +1 reviewed p.V274I 1.000 245 0% 126 19.8% 57 61.4% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_SAM_decarbox,superfamily_S-AdenosylMet_decarbase_core REV3L 5980 genome.wustl.edu 37 6 111650873 111650873 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002912.3 -1 validated p.K2701 1.000 328 0% 158 18.4% 7 42.8% - - - HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_DNA/RNA polymerases REV3L 5980 genome.wustl.edu 37 6 111686485 111686485 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002912.3 -1 validated p.L2246M 1.000 572 0% 238 21.4% 3 33.3% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) superfamily_Ribonuclease H-like REV3L 5980 genome.wustl.edu 37 6 111694388 111694388 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002912.3 -1 validated p.S1724R 0.998 502 0% 177 21.5% 4 50% possibly_damaging(0.612) deleterious(0) deleterious(0.656) superfamily_Ribonuclease H-like REV3L 5980 genome.wustl.edu 37 6 111694530 111694530 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002912.3 -1 validated p.K1676N 1.000 192 0% 81 25.9% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Ribonuclease H-like TRAF3IP2 10758 genome.wustl.edu 37 6 111901546 111901546 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147686.2 -1 reviewed p.P292 0.245 75 0% 22 18.2% 20 30% - - - NULL LAMA4 3910 genome.wustl.edu 37 6 112462663 112462663 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105206.1 -1 reviewed p.L904 1.000 327 0% 123 11.4% 2 0% - - - HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 LAMA4 3910 genome.wustl.edu 37 6 112508673 112508673 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000368640 -1 known p.T119M 0.999 237 0% 65 16.9% 1 0% - - - HMMPfam_Laminin_I HDAC2 3066 genome.wustl.edu 37 6 114277820 114277820 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001527.3 -1 reviewed p.L201 0.994 230 0% 157 22.9% 75 44% - - - HMMPfam_Hist_deacetyl,superfamily_SSF52768 TSPYL4 23270 genome.wustl.edu 37 6 116574585 116574585 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021648.4 -1 validated p.R196M 0.027 124 0% 144 14.6% 5 20% possibly_damaging(0.673) tolerated(0.11) deleterious(0.510) NULL DSE 29940 genome.wustl.edu 37 6 116756770 116756770 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080976.1 +1 reviewed p.S380L 0.993 361 0% 163 30.7% 1 0% benign(0.002) deleterious(0.03) neutral(0.364) NULL DSE 29940 genome.wustl.edu 37 6 116757979 116757979 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080976.1 +1 reviewed p.K783M 1.000 160 0% 73 31.5% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM26E 254228 genome.wustl.edu 37 6 116833152 116833152 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153711.2 +1 validated p.Y98C 0.012 99 0% 41 14.6% 1 0% benign(0) tolerated(0.15) neutral(0.241) NULL ZUFSP 221302 genome.wustl.edu 37 6 116977971 116977971 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145062.2 -1 validated p.Q279 0.281 573 0% 339 10.6% 12 8.3% - - - NULL ROS1 6098 genome.wustl.edu 37 6 117609960 117609960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002944.2 -1 reviewed p.D2247Y 0.992 228 0.4% 95 12.6% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL ROS1 6098 genome.wustl.edu 37 6 117674265 117674265 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002944.2 -1 reviewed p.D1403 0.027 608 0% 187 21.9% 0 - - - - superfamily_SSF63825 ROS1 6098 genome.wustl.edu 37 6 117679091 117679091 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002944.2 -1 reviewed p.E1244* 0.743 347 0% 159 20.1% 0 - - - - superfamily_SSF63825 ROS1 6098 genome.wustl.edu 37 6 117681539 117681539 + Silent SNP T T C rs184367407 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002944.2 -1 reviewed p.G1137 0.997 174 0% 149 18.1% 0 - - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like ROS1 6098 genome.wustl.edu 37 6 117706996 117706996 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002944.2 -1 reviewed p.Y718* 1.000 237 0% 169 17.2% 0 - - - - HMMSmart_LY,superfamily_SSF63825 DCBLD1 285761 genome.wustl.edu 37 6 117859877 117859877 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173674.1 +1 provisional p.W285* 1.000 107 0% 115 27% 4 0% - - - HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like DCBLD1 285761 genome.wustl.edu 37 6 117862117 117862117 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173674.1 +1 provisional p.S429I 0.000 174 0% 143 21.7% 6 66.6% possibly_damaging(0.455) tolerated(0.22) neutral(0.191) NULL ASF1A 25842 genome.wustl.edu 37 6 119226916 119226916 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014034.2 +1 reviewed p.V109F 1.000 319 0% 245 17.6% 46 41.3% possibly_damaging(0.949) deleterious(0) deleterious(0.838) HMMPfam_ASF1_hist_chap,superfamily_ASF1-like FAM184A 79632 genome.wustl.edu 37 6 119332597 119332597 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024581.4 -1 validated e6-1 1.000 290 0% 378 22% 0 - - - - - C6orf170 221322 genome.wustl.edu 37 6 121638663 121638663 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152730.4 -1 validated p.D158G 1.000 806 0% 371 25.1% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL LOC728666 728666 genome.wustl.edu 37 6 126964811 126964811 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_015645.3 +1 model NULL 0.000 54 0% 104 25% 0 - - - - - KIAA0408 9729 genome.wustl.edu 37 6 127768023 127768023 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014702.4 -1 validated p.H481Y 0.000 226 0% 71 21.1% 1 0% possibly_damaging(0.55) tolerated(0.52) neutral(0.196) NULL SOGA3 387104 genome.wustl.edu 37 6 127794485 127794485 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012279.2 -1 validated p.L929I 1.000 379 0% 422 19.9% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL LOC100287918 100287918 genome.wustl.edu 37 6 127981439 127981439 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342669.1 +1 model p.T160A 0.999 158 0% 124 15.3% 0 - - - - NULL THEMIS 387357 genome.wustl.edu 37 6 128134240 128134240 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010923.2 -1 reviewed p.V516I 0.056 202 0% 102 26.5% 3 0% benign(0.324) tolerated(0.39) neutral(0.118) NULL THEMIS 387357 genome.wustl.edu 37 6 128150862 128150862 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010923.2 -1 reviewed p.R156S 0.937 367 0.3% 267 13.9% 3 0% probably_damaging(0.975) tolerated(0.37) neutral(0.436) NULL PTPRK 5796 genome.wustl.edu 37 6 128294873 128294873 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135648.1 -1 validated p.L1363I 1.000 162 0% 48 20.8% 24 37.5% probably_damaging(0.987) deleterious(0.05) deleterious(0.782) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 PTPRK 5796 genome.wustl.edu 37 6 128312441 128312441 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135648.1 -1 validated p.R999W 1.000 399 0% 112 31.2% 15 46.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 LAMA2 3908 genome.wustl.edu 37 6 129573326 129573326 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000426.3 +1 reviewed p.T661I 0.098 232 0% 106 29.2% 0 - benign(0.001) tolerated(0.23) neutral(0.042) HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB LAMA2 3908 genome.wustl.edu 37 6 129777579 129777579 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000426.3 +1 reviewed p.T2269 0.853 212 0% 98 18.4% 0 - - - - HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1 SAMD3 154075 genome.wustl.edu 37 6 130465892 130465892 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017373.2 -1 validated p.E446K 1.000 93 0% 34 17.6% 6 0% possibly_damaging(0.753) tolerated(0.3) neutral(0.305) NULL SAMD3 154075 genome.wustl.edu 37 6 130497111 130497111 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017373.2 -1 validated p.R233* 1.000 490 0% 259 23.2% 5 0% - - - NULL SAMD3 154075 genome.wustl.edu 37 6 130535624 130535624 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017373.2 -1 validated p.V43I 1.000 213 0% 63 19% 1 0% benign(0.018) deleterious(0) neutral(0.445) HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain AKAP7 9465 genome.wustl.edu 37 6 131520613 131520613 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016377.2 +1 reviewed p.R179M 0.997 308 0.3% 84 21.4% 6 50% probably_damaging(0.953) deleterious(0.03) deleterious(0.761) superfamily_LigT-like,HMMPfam_AKAP7_NLS AKAP7 9465 genome.wustl.edu 37 6 131602765 131602765 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016377.2 +1 reviewed p.L294M 0.997 117 0% 32 25% 5 100% probably_damaging(0.996) tolerated(0.18) deleterious(0.518) HMMPfam_AKAP7_RIRII_bdg MED23 9439 genome.wustl.edu 37 6 131914277 131914277 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004830.2 -1 reviewed p.N1089K 1.000 200 0% 63 9.5% 11 18.1% possibly_damaging(0.891) tolerated(0.66) neutral(0.353) NULL MOXD1 26002 genome.wustl.edu 37 6 132618386 132618386 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015529.2 -1 validated p.T583M 0.007 309 0% 81 19.8% 35 11.4% possibly_damaging(0.598) tolerated(0.07) deleterious(0.526) NULL MOXD1 26002 genome.wustl.edu 37 6 132618434 132618434 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015529.2 -1 validated p.P567L 0.999 285 0% 75 26.7% 32 6.2% benign(0.175) tolerated(0.2) neutral(0.065) NULL STX7 8417 genome.wustl.edu 37 6 132791751 132791751 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003569.2 -1 validated p.E134D 0.262 430 0% 147 27.2% 29 34.4% benign(0) tolerated(0.59) neutral(0.004) superfamily_t-snare proteins STX7 8417 genome.wustl.edu 37 6 132796786 132796786 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003569.2 -1 validated p.R34I 0.996 413 0% 157 19.1% 25 44% probably_damaging(0.976) deleterious(0.01) deleterious(0.824) HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins TAAR8 83551 genome.wustl.edu 37 6 132874243 132874243 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053278.1 +1 provisional p.V138I 0.000 419 0% 110 22.7% 0 - benign(0.003) tolerated(0.42) neutral(0.014) HMMPfam_7tm_1,superfamily_SSF81321 TAAR2 9287 genome.wustl.edu 37 6 132939215 132939215 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033080.1 -1 validated p.V44L 0.000 235 0% 56 19.6% 0 - benign(0.001) tolerated(0.44) neutral(0.013) superfamily_Family A G protein-coupled receptor-like TAAR1 134864 genome.wustl.edu 37 6 132967062 132967062 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138327.1 -1 provisional p.Y27 0.701 290 0% 94 22.3% 1 0% - - - superfamily_SSF81321 VNN1 8876 genome.wustl.edu 37 6 133014313 133014313 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004666.2 -1 reviewed p.D226Y 0.871 331 0% 97 22.7% 1 0% possibly_damaging(0.87) deleterious(0) deleterious(0.782) HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse SLC18B1 116843 genome.wustl.edu 37 6 133092071 133092071 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052831.2 -1 validated p.A421V 0.000 140 0% 93 20.4% 20 65% benign(0.001) tolerated(1) - superfamily_MFS general substrate transporter SLC18B1 116843 genome.wustl.edu 37 6 133110964 133110964 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052831.2 -1 validated p.G98* 1.000 421 0% 255 16.1% 15 0% - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter EYA4 2070 genome.wustl.edu 37 6 133846193 133846193 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172105.3 +1 reviewed p.G593 1.000 424 0% 111 9.9% 0 - - - - HMMPfam_Hydrolase SLC2A12 154091 genome.wustl.edu 37 6 134349939 134349939 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145176.2 -1 validated p.G342S 1.000 245 0% 107 18.7% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter SGK1 6446 genome.wustl.edu 37 6 134492796 134492796 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143676.1 -1 reviewed p.L382 0.974 161 0% 180 14.4% 35 37.1% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase SGK1 6446 genome.wustl.edu 37 6 134494492 134494492 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143676.1 -1 reviewed p.L208F 1.000 475 0% 533 21.4% 23 26% benign(0.287) tolerated(0.12) neutral(0.349) HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase ALDH8A1 64577 genome.wustl.edu 37 6 135239890 135239890 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022568.2 -1 reviewed p.T376M 1.000 157 0% 95 21.1% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aldedh,superfamily_ALDH-like LOC100288216 100288216 genome.wustl.edu 37 6 135240009 135240009 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342673.1 +1 model p.L150 0.000 153 0% 129 21.7% 0 - - - - NULL HBS1L 10767 genome.wustl.edu 37 6 135317986 135317986 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006620.3 -1 reviewed p.E298 0.982 370 0% 145 20% 17 35.2% - - - HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases MYB 4602 genome.wustl.edu 37 6 135516956 135516956 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130173.1 +1 reviewed p.G340E 1.000 421 0% 242 21.1% 4 50% benign(0.282) tolerated(0.23) neutral(0.128) NULL AHI1 54806 genome.wustl.edu 37 6 135644407 135644407 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134830.1 -1 reviewed p.R1074H 1.000 379 0% 135 18.5% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain AHI1 54806 genome.wustl.edu 37 6 135787133 135787133 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134830.1 -1 reviewed p.Q190* 0.987 830 0% 576 24.7% 2 0% - - - superfamily_WD40 repeat-like PDE7B 27115 genome.wustl.edu 37 6 136495026 136495026 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018945.3 +1 reviewed p.T268I 1.000 250 0% 74 13.5% 11 63.6% benign(0.429) tolerated(0.37) neutral(0.159) HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like PDE7B 27115 genome.wustl.edu 37 6 136512819 136512819 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018945.3 +1 reviewed p.L398 0.956 60 0% 54 18.5% 16 37.5% - - - HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like BCLAF1 9774 genome.wustl.edu 37 6 136599023 136599023 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014739.2 -1 reviewed p.K332N 1.000 88 0% 40 30% 32 34.3% possibly_damaging(0.722) tolerated(0.24) neutral(0.299) NULL BCLAF1 9774 genome.wustl.edu 37 6 136600941 136600941 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014739.2 -1 reviewed p.R22* 1.000 248 0% 155 15.5% 16 50% - - - NULL MAP3K5 4217 genome.wustl.edu 37 6 136883646 136883646 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005923.3 -1 reviewed p.P1290L 1.000 565 0.2% 439 20.3% 10 30% probably_damaging(0.98) tolerated(0.18) deleterious(0.480) NULL MAP3K5 4217 genome.wustl.edu 37 6 136913412 136913412 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005923.3 -1 reviewed p.F1042V 1.000 233 0% 99 16.2% 10 20% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL MAP3K5 4217 genome.wustl.edu 37 6 136977446 136977446 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005923.3 -1 reviewed p.P560L 1.000 193 0% 96 22.9% 4 25% probably_damaging(0.996) tolerated(0.1) deleterious(0.748) NULL PEX7 5191 genome.wustl.edu 37 6 137166791 137166791 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000288.3 +1 reviewed p.Q126 1.000 659 0% 281 20.6% 13 46.1% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 SLC35D3 340146 genome.wustl.edu 37 6 137245350 137245350 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008783.1 +1 provisional p.S256N 1.000 89 0% 102 29.4% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_UAA KIAA1244 57221 genome.wustl.edu 37 6 138655146 138655146 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020340.4 +1 validated p.H1721Q 1.000 166 0% 104 13.5% 2 50% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL NHSL1 57224 genome.wustl.edu 37 6 138750848 138750848 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144060.1 -1 validated p.R1362K 1.000 288 0% 277 25.3% 10 10% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL NHSL1 57224 genome.wustl.edu 37 6 138752457 138752457 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144060.1 -1 validated p.P1009T 0.993 101 0% 82 29.3% 12 41.6% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL ECT2L 345930 genome.wustl.edu 37 6 139167798 139167798 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077706.1 +1 validated p.R296Q 1.000 324 0.6% 140 17.1% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL REPS1 85021 genome.wustl.edu 37 6 139229850 139229850 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031922.3 -1 validated p.T723M 1.000 539 0% 472 22.5% 78 43.5% possibly_damaging(0.859) deleterious(0.01) deleterious(0.738) NULL TXLNB 167838 genome.wustl.edu 37 6 139564361 139564361 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153235.3 -1 validated p.E453K 0.981 396 0% 327 22% 0 - possibly_damaging(0.836) tolerated(0.08) deleterious(0.619) NULL HIVEP2 3097 genome.wustl.edu 37 6 143074763 143074763 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006734.3 -1 provisional p.D2274 0.959 205 0% 74 25.7% 32 53.1% - - - NULL HIVEP2 3097 genome.wustl.edu 37 6 143092906 143092906 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006734.3 -1 provisional p.K990 1.000 249 0% 169 24.3% 5 20% - - - NULL HIVEP2 3097 genome.wustl.edu 37 6 143095247 143095247 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006734.3 -1 provisional p.S210F 1.000 277 0% 218 19.7% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 AIG1 51390 genome.wustl.edu 37 6 143654457 143654457 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016108.2 +1 validated p.Y185C 1.000 324 0% 197 17.3% 71 30.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Far-17a_AIG1 FUCA2 2519 genome.wustl.edu 37 6 143816961 143816961 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032020.3 -1 validated p.Q429 0.000 235 0% 69 27.5% 245 34.2% - - - NULL LTV1 84946 genome.wustl.edu 37 6 144178517 144178517 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032860.3 +1 provisional p.L159I 1.000 936 0.1% 390 23.8% 24 58.3% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_LTV LTV1 84946 genome.wustl.edu 37 6 144181562 144181562 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032860.3 +1 provisional e7-1 1.000 559 0% 187 19.8% 2 50% - - - - PLAGL1 5325 genome.wustl.edu 37 6 144263439 144263439 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080951.1 -1 reviewed p.R172* 1.000 161 0% 60 18.3% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PLAGL1 5325 genome.wustl.edu 37 6 144263491 144263491 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080951.1 -1 reviewed p.K154N 1.000 235 0% 84 16.7% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_C2H2 and C2HC zinc fingers PLAGL1 5325 genome.wustl.edu 37 6 144263799 144263799 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080951.1 -1 reviewed p.H52Y 1.000 431 0% 219 22.8% 1 100% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers UTRN 7402 genome.wustl.edu 37 6 144768771 144768771 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007124.2 +1 reviewed p.T586P 0.997 225 0% 127 24.4% 0 - possibly_damaging(0.698) tolerated(0.08) deleterious(0.551) HMMSmart_SPEC,superfamily_Spectrin UTRN 7402 genome.wustl.edu 37 6 144800959 144800959 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007124.2 +1 reviewed p.Q1116H 0.993 216 0% 141 17.7% 5 40% benign(0.145) tolerated(0.55) neutral(0.019) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin UTRN 7402 genome.wustl.edu 37 6 144860572 144860572 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007124.2 +1 reviewed p.W2171L 1.000 172 0% 42 35.7% 3 0% possibly_damaging(0.804) tolerated(0.19) neutral(0.352) HMMSmart_SPEC,superfamily_Spectrin SHPRH 257218 genome.wustl.edu 37 6 146267368 146267368 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042683.2 -1 validated e6+1 1.000 554 0% 134 15.7% 0 - - - - - SHPRH 257218 genome.wustl.edu 37 6 146267458 146267458 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042683.2 -1 validated p.F411C 1.000 540 0% 152 22.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases SHPRH 257218 genome.wustl.edu 37 6 146276266 146276266 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042683.2 -1 validated p.V65M 0.514 266 0% 233 17.2% 1 0% benign(0.229) tolerated(0.13) neutral(0.276) NULL GRM1 2911 genome.wustl.edu 37 6 146480699 146480699 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000838.3 +1 reviewed p.L306I 0.999 102 0% 44 13.6% 0 - possibly_damaging(0.804) tolerated(0.07) deleterious(0.621) HMMPfam_ANF_receptor,superfamily_SSF53822 GRM1 2911 genome.wustl.edu 37 6 146673403 146673403 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000838.3 +1 reviewed p.E402* 1.000 201 0% 96 13.5% 0 - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 GRM1 2911 genome.wustl.edu 37 6 146747733 146747733 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114329.1 +1 reviewed p.P900L 1.000 237 0% 187 23.5% 0 - unknown(0) deleterious(0.02) - NULL ADGB 79747 genome.wustl.edu 37 6 146997460 146997460 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024694.3 +1 provisional p.A367T 0.045 267 0% 66 19.7% 0 - possibly_damaging(0.84) deleterious(0.01) deleterious(0.727) HMMSmart_SM00230 ADGB 79747 genome.wustl.edu 37 6 147105825 147105825 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024694.3 +1 provisional p.H1369 0.874 266 0% 113 25.7% 0 - - - - NULL ADGB 79747 genome.wustl.edu 37 6 147128720 147128720 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000367489 +1 known p.K612N 0.983 49 0% 58 20.7% 0 - unknown(0) - - NULL SASH1 23328 genome.wustl.edu 37 6 148865589 148865589 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015278.3 +1 validated p.R995C 1.000 57 0% 56 21.4% 9 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SASH1 23328 genome.wustl.edu 37 6 148865947 148865947 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015278.3 +1 validated p.S1114Y 1.000 75 0% 61 29.5% 8 37.5% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL TAB2 23118 genome.wustl.edu 37 6 149700376 149700376 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015093.4 +1 reviewed p.A442V 1.000 240 0% 126 13.5% 17 5.8% benign(0.001) tolerated(0.34) neutral(0.023) NULL TAB2 23118 genome.wustl.edu 37 6 149719131 149719131 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015093.4 +1 reviewed p.S597R 0.999 327 0% 245 16.7% 18 22.2% possibly_damaging(0.923) tolerated(0.1) deleterious(0.659) NULL ZC3H12D 340152 genome.wustl.edu 37 6 149783021 149783021 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207360.2 -1 validated p.V131I 1.000 308 0% 285 23.5% 1 0% probably_damaging(0.974) tolerated(0.08) deleterious(0.716) NULL PPIL4 85313 genome.wustl.edu 37 6 149847798 149847798 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139126.2 -1 reviewed p.P265S 0.998 493 0% 244 24.6% 31 48.3% benign(0.001) tolerated(0.8) neutral(0.001) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD PPIL4 85313 genome.wustl.edu 37 6 149862662 149862662 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139126.2 -1 reviewed p.N44S 1.000 375 0% 305 13.1% 8 37.5% benign(0.002) tolerated(0.84) neutral(0.001) HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like KATNA1 11104 genome.wustl.edu 37 6 149924431 149924431 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007044.2 -1 reviewed p.F234L 1.000 418 0% 210 25.2% 25 24% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_P-loop containing nucleoside triphosphate hydrolases PCMT1 5110 genome.wustl.edu 37 6 150123433 150123433 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005389.2 +1 validated p.G201D 1.000 277 0% 136 26.5% 150 40.6% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases PPP1R14C 81706 genome.wustl.edu 37 6 150535919 150535919 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030949.2 +1 validated p.L116I 1.000 384 0.3% 186 12.4% 3 0% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor IYD 389434 genome.wustl.edu 37 6 150710674 150710674 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203395.2 +1 reviewed p.T122M 0.653 422 0% 208 22.1% 0 - possibly_damaging(0.825) deleterious(0.01) deleterious(0.718) HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like MTHFD1L 25902 genome.wustl.edu 37 6 151277182 151277182 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015440.3 +1 validated p.N593S 0.000 274 0% 133 12% 16 18.7% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases MTHFD1L 25902 genome.wustl.edu 37 6 151336094 151336094 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015440.3 +1 validated p.V796M 1.000 435 0.2% 235 23.4% 52 40.3% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases AKAP12 9590 genome.wustl.edu 37 6 151672412 151672412 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005100.3 +1 reviewed p.G962 0.000 75 0% 55 14.5% 4 25% - - - NULL AKAP12 9590 genome.wustl.edu 37 6 151673181 151673181 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005100.3 +1 reviewed p.E1219* 0.009 109 0% 53 30.2% 8 25% - - - NULL RMND1 55005 genome.wustl.edu 37 6 151744746 151744746 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017909.2 -1 validated p.R284M 1.000 402 0% 164 23.2% 26 53.8% possibly_damaging(0.565) tolerated(0.08) deleterious(0.493) HMMPfam_DUF155 SYNE1 23345 genome.wustl.edu 37 6 152453303 152453303 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.S8683F 1.000 286 0% 215 23.3% 35 14.2% possibly_damaging(0.592) deleterious(0) deleterious(0.649) NULL SYNE1 23345 genome.wustl.edu 37 6 152472693 152472693 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.L8149I 1.000 123 0% 72 18.1% 10 20% probably_damaging(0.986) deleterious(0.02) deleterious(0.818) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152557412 152557412 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.Y6742 1.000 466 0% 250 23.6% 2 0% - - - HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152615120 152615120 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.R5942H 1.000 210 0% 142 22.5% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152673435 152673435 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.E3769 1.000 254 0% 133 24.1% 0 - - - - superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152728220 152728220 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.P2218S 0.997 483 0% 141 9.2% 0 - benign(0) - - superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152749512 152749512 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182961.2 -1 reviewed p.L1602M 0.993 107 0% 51 23.5% 0 - possibly_damaging(0.459) - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat FBXO5 26271 genome.wustl.edu 37 6 153296401 153296401 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012177.3 -1 reviewed p.Q153 0.000 543 0% 453 23.8% 8 12.5% - - - NULL SCAF8 22828 genome.wustl.edu 37 6 155153580 155153580 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014892.3 +1 validated p.S956L 0.027 136 0% 55 14.5% 26 38.4% possibly_damaging(0.883) deleterious(0) deleterious(0.789) NULL SCAF8 22828 genome.wustl.edu 37 6 155153743 155153743 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014892.3 +1 validated p.Q1010H 1.000 86 0% 32 25% 23 43.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TIAM2 26230 genome.wustl.edu 37 6 155450566 155450566 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012454.3 +1 reviewed p.S70I 0.303 113 0.9% 85 24.7% 0 - possibly_damaging(0.491) deleterious(0) deleterious(0.608) NULL TIAM2 26230 genome.wustl.edu 37 6 155503406 155503406 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012454.3 +1 reviewed p.R918 0.767 482 0% 165 16.4% 1 0% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like TIAM2 26230 genome.wustl.edu 37 6 155575684 155575684 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012454.3 +1 reviewed p.R1482Q 0.986 393 0% 374 21.1% 7 0% possibly_damaging(0.948) tolerated(0.38) neutral(0.409) NULL TMEM242 729515 genome.wustl.edu 37 6 157739938 157739938 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018452.4 -1 validated p.T68M 0.997 160 0% 131 28.2% 37 29.7% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) HMMPfam_DUF1358 SYNJ2 8871 genome.wustl.edu 37 6 158454682 158454682 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003898.3 +1 reviewed p.G227 1.000 48 0% 35 25.7% 4 25% - - - HMMPfam_Syja_N SERAC1 84947 genome.wustl.edu 37 6 158549293 158549293 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032861.3 -1 validated p.H288Y 0.996 267 0% 86 24.4% 4 25% probably_damaging(0.998) tolerated(0.27) deleterious(0.508) superfamily_ARM repeat TULP4 56995 genome.wustl.edu 37 6 158873287 158873287 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020245.3 +1 validated p.R282 1.000 165 0% 76 13.2% 3 0% - - - superfamily_WD40 repeat-like TAGAP 117289 genome.wustl.edu 37 6 159457336 159457336 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054114.3 -1 reviewed p.P573 0.179 36 0% 32 12.5% 7 0% - - - NULL FNDC1 84624 genome.wustl.edu 37 6 159654772 159654772 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032532.2 +1 validated p.Q1076H 0.002 15 0% 19 26.3% 0 - unknown(0) tolerated(0.24) - NULL FNDC1 84624 genome.wustl.edu 37 6 159687141 159687141 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329629 +1 known p.R1666C 0.960 349 0% 121 20.7% 11 0% - - - NULL TCP1 6950 genome.wustl.edu 37 6 160200210 160200210 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030752.2 -1 reviewed p.S513I 1.000 354 0% 268 19.4% 450 46.2% benign(0.186) tolerated(0.15) neutral(0.259) HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase PNLDC1 154197 genome.wustl.edu 37 6 160227065 160227065 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173516.1 +1 provisional p.W160L 1.000 259 0% 254 22% 0 - probably_damaging(1) tolerated(0.82) deleterious(0.500) HMMPfam_CAF1,superfamily_Ribonuclease H-like PNLDC1 154197 genome.wustl.edu 37 6 160239630 160239630 + Missense_Mutation SNP G G A rs190950900 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173516.1 +1 provisional p.V390M 0.995 71 0% 60 23.3% 0 - benign(0) tolerated(0.22) neutral(0.042) NULL PNLDC1 154197 genome.wustl.edu 37 6 160240124 160240124 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173516.1 +1 provisional p.Q457H 1.000 178 0% 244 11.1% 0 - benign(0.409) tolerated(0.23) neutral(0.174) NULL IGF2R 3482 genome.wustl.edu 37 6 160481599 160481599 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000876.2 +1 reviewed p.V1038I 1.000 453 0% 259 23.6% 7 28.5% benign(0) tolerated(1) - HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain IGF2R 3482 genome.wustl.edu 37 6 160493857 160493857 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000876.2 +1 reviewed p.E1544G 1.000 324 0% 192 22.4% 15 13.3% benign(0.002) tolerated(0.35) neutral(0.021) HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain IGF2R 3482 genome.wustl.edu 37 6 160501267 160501267 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000876.2 +1 reviewed p.A1931 0.004 147 0% 105 25.7% 23 43.4% - - - HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Mannose 6-phosphate receptor domain,superfamily_Kringle-like IGF2R 3482 genome.wustl.edu 37 6 160510221 160510221 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000876.2 +1 reviewed p.V2135L 1.000 155 0% 156 25.6% 38 42.1% possibly_damaging(0.74) tolerated(0.05) deleterious(0.617) superfamily_Mannose 6-phosphate receptor domain LOC100289162 100289162 genome.wustl.edu 37 6 160543066 160543066 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342677.1 -1 model p.R545C 1.000 67 0% 76 23.7% 0 - - - - NULL SLC22A1 6580 genome.wustl.edu 37 6 160560819 160560819 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003057.2 +1 reviewed p.R399H 0.001 168 0% 131 26% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MFS_1,superfamily_MFS general substrate transporter SLC22A1 6580 genome.wustl.edu 37 6 160579593 160579593 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003057.2 +1 reviewed p.T548 0.003 236 0% 90 20% 2 0% - - - NULL SLC22A2 6582 genome.wustl.edu 37 6 160670367 160670367 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003058.2 -1 reviewed p.Y241 1.000 202 0% 95 24.2% 0 - - - - HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter LOC100289195 100289195 genome.wustl.edu 37 6 160874488 160874488 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342678.1 -1 model p.T290N 0.000 799 0% 230 10.4% 0 - - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases PARK2 5071 genome.wustl.edu 37 6 161771176 161771176 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004562.2 -1 reviewed p.C451 0.076 26 0% 28 28.6% 0 - - - - HMMSmart_SM00647,superfamily_RING/U-box LOC100129958 100129958 genome.wustl.edu 37 6 162990473 162990473 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001719102.1 +1 model p.A221T 1.000 35 0% 40 12.5% 1 100% - - - HMMPfam_Filament,PatternScan_IF C6orf118 168090 genome.wustl.edu 37 6 165703375 165703375 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144980.3 -1 validated p.E434D 1.000 273 0% 138 18.1% 0 - probably_damaging(0.998) tolerated(0.05) deleterious(0.820) NULL T 6862 genome.wustl.edu 37 6 166579329 166579329 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003181.2 -1 reviewed e3-1 1.000 284 0% 338 22.5% 0 - - - - - RPS6KA2 6196 genome.wustl.edu 37 6 166952240 166952240 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006932.1 -1 reviewed p.S52 1.000 191 0% 116 12.9% 3 0% - - - superfamily_Kinase_like GPR31 2853 genome.wustl.edu 37 6 167570984 167570984 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005299.2 -1 validated p.R112 0.998 22 0% 23 30.4% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 TTLL2 83887 genome.wustl.edu 37 6 167752209 167752209 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031949.4 +1 validated p.A41V 0.004 345 0% 232 23.7% 0 - unknown(0) tolerated(0.08) - NULL MLLT4 4301 genome.wustl.edu 37 6 168343835 168343835 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040001.1 +1 validated p.I1034 1.000 844 0% 350 20.3% 16 81.2% - - - HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ FRMD1 79981 genome.wustl.edu 37 6 168457951 168457951 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024919.3 -1 validated p.H492 0.074 29 0% 26 42.3% 0 - - - - NULL DACT2 168002 genome.wustl.edu 37 6 168708391 168708391 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_214462.3 -1 validated p.S682 0.991 27 0% 30 23.3% 27 51.8% - - - NULL SMOC2 64094 genome.wustl.edu 37 6 169051454 169051454 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022138.2 +1 reviewed p.S345L 0.010 72 0% 47 12.8% 12 0% possibly_damaging(0.872) tolerated(0.27) neutral(0.373) superfamily_SSF47473 THBS2 7058 genome.wustl.edu 37 6 169633085 169633085 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003247.2 -1 reviewed p.P560L 0.983 70 0% 99 23.2% 1 0% benign(0.425) deleterious(0.03) deleterious(0.502) HMMSmart_EGF,superfamily_SSF57196 LOC100289471 100289471 genome.wustl.edu 37 6 169648905 169648905 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342681.1 +1 model p.A64T 0.019 165 0% 154 26.6% 0 - - - - NULL LINC00242 401288 genome.wustl.edu 37 6 170190547 170190547 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026781.1 -1 validated NULL 0.000 201 0% 141 20.6% 0 - - - - - DLL1 28514 genome.wustl.edu 37 6 170592091 170592091 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005618.3 -1 reviewed p.C717 0.986 298 0.3% 385 23.4% 7 0% - - - NULL FAM120B 84498 genome.wustl.edu 37 6 170626674 170626674 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032448.1 +1 provisional p.E66* 1.000 499 0% 301 21.9% 6 16.6% - - - superfamily_PIN domain-like TBP 6908 genome.wustl.edu 37 6 170871016 170871016 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003194.4 +1 reviewed p.Q64 1.000 32 0% 25 28% 9 22.2% - - - NULL HEATR2 54919 genome.wustl.edu 37 7 810217 810217 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440747 +1 known p.R433C 0.000 58 0% 56 26.8% 47 53.1% - - - superfamily_ARM repeat SUN1 23353 genome.wustl.edu 37 7 891106 891106 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433212 +1 known p.R97C 0.068 204 0% 245 19.2% 23 13% - - - NULL GET4 51608 genome.wustl.edu 37 7 930664 930664 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015949.2 +1 validated p.R189H 1.000 204 0% 183 25.1% 88 39.7% benign(0.016) tolerated(0.25) neutral(0.037) HMMPfam_DUF410 GPR146 115330 genome.wustl.edu 37 7 1097715 1097715 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138445.2 +1 provisional p.D188 0.993 28 0% 31 19.4% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like INTS1 26173 genome.wustl.edu 37 7 1522287 1522287 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080453.2 -1 validated p.L1200 0.982 30 0% 35 17.1% 34 32.3% - - - NULL INTS1 26173 genome.wustl.edu 37 7 1526582 1526582 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080453.2 -1 validated p.K934N 0.879 60 0% 60 13.3% 30 13.3% probably_damaging(0.962) deleterious(0.02) deleterious(0.788) NULL INTS1 26173 genome.wustl.edu 37 7 1542572 1542572 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080453.2 -1 validated p.P105L 1.000 186 0% 202 17.3% 7 14.2% possibly_damaging(0.672) deleterious(0.01) deleterious(0.643) NULL INTS1 26173 genome.wustl.edu 37 7 1542764 1542764 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080453.2 -1 validated p.T41M 0.974 112 0.9% 155 19.4% 10 40% possibly_damaging(0.906) tolerated(0.11) deleterious(0.631) NULL MAFK 7975 genome.wustl.edu 37 7 1579606 1579606 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002360.3 +1 validated p.P22 0.436 40 0% 38 23.7% 8 12.5% - - - HMMPfam_bZIP_Maf MAFK 7975 genome.wustl.edu 37 7 1579906 1579906 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002360.3 +1 validated p.A122 1.000 22 0% 18 27.8% 1 0% - - - NULL TMEM184A 202915 genome.wustl.edu 37 7 1590606 1590606 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001097620.1 -1 validated p.L78 1.000 120 0.8% 129 25.6% 15 26.6% - - - HMMPfam_DUF300 PSMG3 84262 genome.wustl.edu 37 7 1607342 1607342 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134340.1 -1 validated p.V121L 1.000 83 0% 77 27.3% 173 44.5% probably_damaging(0.997) deleterious(0.02) deleterious(0.849) HMMPfam_DUF2372 ELFN1 392617 genome.wustl.edu 37 7 1784874 1784874 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128636.2 +1 validated p.T214 0.331 9 0.000 15 0.400 1 0% - - - HMMSmart_SM00082,superfamily_L domain-like ELFN1 392617 genome.wustl.edu 37 7 1785894 1785894 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128636.2 +1 validated p.E554 1.000 17 0% 25 24% 3 0% - - - NULL MAD1L1 8379 genome.wustl.edu 37 7 2259082 2259082 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013836.1 -1 reviewed p.A161T 0.000 101 0% 106 24.5% 36 41.6% benign(0) tolerated(0.62) neutral(0.004) HMMPfam_MAD EIF3B 8662 genome.wustl.edu 37 7 2402393 2402393 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037283.1 +1 validated p.F269C 1.000 119 0% 122 18% 114 30.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL EIF3B 8662 genome.wustl.edu 37 7 2406060 2406060 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037283.1 +1 validated p.S422R 1.000 247 0% 223 23.8% 86 44.1% benign(0.014) tolerated(0.2) neutral(0.050) superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain CHST12 55501 genome.wustl.edu 37 7 2473508 2473508 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018641.3 +1 validated p.L412I 0.995 41 0% 73 17.8% 58 10.3% possibly_damaging(0.896) tolerated(0.15) deleterious(0.595) NULL BRAT1 221927 genome.wustl.edu 37 7 2578095 2578095 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152743.2 -1 provisional p.L692M 0.089 51 0% 34 20.6% 69 18.8% possibly_damaging(0.938) deleterious(0) deleterious(0.828) NULL BRAT1 221927 genome.wustl.edu 37 7 2579491 2579491 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152743.2 -1 provisional p.R476M 0.013 130 0.8% 123 22% 60 38.3% benign(0.427) deleterious(0) deleterious(0.584) superfamily_ARM repeat BRAT1 221927 genome.wustl.edu 37 7 2582872 2582872 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152743.2 -1 provisional p.P297S 0.809 59 0% 69 15.9% 69 33.3% probably_damaging(0.998) tolerated(0.25) deleterious(0.511) superfamily_ARM repeat AMZ1 155185 genome.wustl.edu 37 7 2740225 2740225 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133463.1 +1 provisional p.A47V 1.000 35 0% 45 22.2% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL GNA12 2768 genome.wustl.edu 37 7 2771018 2771018 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007353.2 -1 validated p.P315S 0.997 162 0% 122 25.4% 13 23% benign(0) tolerated(0.08) neutral(0.300) HMMPfam_G-alpha,superfamily_SSF52540 GNA12 2768 genome.wustl.edu 37 7 2771196 2771196 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007353.2 -1 validated p.S255 0.253 104 0% 55 25.5% 23 39.1% - - - HMMPfam_G-alpha,superfamily_SSF52540 CARD11 84433 genome.wustl.edu 37 7 2946435 2946435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032415.3 -1 validated p.R1101H 0.858 46 0% 39 20.5% 28 0% probably_damaging(0.978) deleterious(0.02) deleterious(0.803) superfamily_SSF52540 CARD11 84433 genome.wustl.edu 37 7 2959102 2959102 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032415.3 -1 validated p.D805G 1.000 97 0% 82 24.4% 19 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CARD11 84433 genome.wustl.edu 37 7 2976856 2976856 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032415.3 -1 validated p.R386* 0.951 219 0.5% 231 14.3% 8 0% - - - NULL SDK1 221935 genome.wustl.edu 37 7 4116650 4116650 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152744.3 +1 validated p.V1011M 1.000 298 0% 135 23.7% 4 100% probably_damaging(0.98) tolerated(0.08) deleterious(0.724) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SDK1 221935 genome.wustl.edu 37 7 4150342 4150342 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152744.3 +1 validated p.E1124D 0.993 289 0.3% 260 23.1% 1 0% benign(0.245) tolerated(0.61) neutral(0.029) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III FOXK1 221937 genome.wustl.edu 37 7 4801880 4801880 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037165.1 +1 validated p.R663W 0.979 60 0% 39 20.5% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KIAA0415 9907 genome.wustl.edu 37 7 4820904 4820904 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014855.1 +1 validated p.R47M 1.000 72 0% 94 12.8% 17 35.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KIAA0415 9907 genome.wustl.edu 37 7 4830317 4830317 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014855.1 +1 validated p.G651D 1.000 80 0% 114 23.7% 47 23.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RBAK 57786 genome.wustl.edu 37 7 5104304 5104304 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021163.3 +1 reviewed p.C406Y 1.000 206 0% 120 25% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RBAK 57786 genome.wustl.edu 37 7 5105037 5105037 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021163.3 +1 reviewed p.P650 1.000 368 0% 261 13% 1 0% - - - superfamily_C2H2 and C2HC zinc fingers WIPI2 26100 genome.wustl.edu 37 7 5266963 5266963 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015610.3 +1 validated p.C334Y 1.000 47 0% 55 12.7% 58 29.3% possibly_damaging(0.952) deleterious(0) deleterious(0.840) HMMSmart_SM00320,superfamily_WD40 repeat-like SLC29A4 222962 genome.wustl.edu 37 7 5330825 5330825 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040661.1 +1 reviewed p.N124 0.995 87 0% 91 12.1% 1 100% - - - superfamily_MFS general substrate transporter TNRC18 84629 genome.wustl.edu 37 7 5352492 5352492 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080495.2 -1 provisional p.S2677Y 1.000 23 0% 21 23.8% 68 36.7% unknown(0) deleterious(0) - NULL TNRC18 84629 genome.wustl.edu 37 7 5364835 5364835 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000455076 -1 known p.R112H 0.001 34 0% 48 31.2% 25 44% - - - NULL TNRC18 84629 genome.wustl.edu 37 7 5401258 5401258 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080495.2 -1 provisional p.R1543H 1.000 39 0% 33 12.1% 19 42.1% probably_damaging(0.995) tolerated(0.1) deleterious(0.744) NULL TNRC18 84629 genome.wustl.edu 37 7 5434163 5434163 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080495.2 -1 provisional p.S84N 0.978 50 0% 58 32.8% 5 40% benign(0.359) tolerated(0.12) neutral(0.374) NULL FBXL18 80028 genome.wustl.edu 37 7 5521469 5521469 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000297035 -1 known p.P257S 1.000 60 0% 51 29.4% 2 50% unknown(0) - - NULL FSCN1 6624 genome.wustl.edu 37 7 5643034 5643034 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003088.2 +1 validated p.A327T 0.988 29 0% 47 23.4% 85 38.8% probably_damaging(0.99) tolerated(0.08) deleterious(0.742) superfamily_Actin_crosslink,HMMPfam_Fascin FSCN1 6624 genome.wustl.edu 37 7 5643504 5643504 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003088.2 +1 validated p.E374D 1.000 136 0.7% 101 16.8% 92 31.5% benign(0.038) tolerated(0.1) neutral(0.288) superfamily_Actin_crosslink,HMMPfam_Fascin RNF216 54476 genome.wustl.edu 37 7 5780659 5780659 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207111.2 -1 reviewed p.G330E 0.745 178 0% 178 18.5% 14 35.7% probably_damaging(1) tolerated(0.78) deleterious(0.501) NULL RSPH10B 222967 genome.wustl.edu 37 7 6006623 6006623 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173565.3 -1 validated p.P42L 0.008 599 0% 493 15.2% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL AIMP2 7965 genome.wustl.edu 37 7 6054835 6054835 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006303.3 +1 validated p.R65H 1.000 464 0% 347 20.5% 87 44.8% probably_damaging(0.99) deleterious(0.04) deleterious(0.790) NULL EIF2AK1 27102 genome.wustl.edu 37 7 6077087 6077087 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014413.3 -1 reviewed p.H434Y 1.000 649 0% 338 20.4% 79 39.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase USP42 84132 genome.wustl.edu 37 7 6189540 6189540 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032172.2 +1 validated p.T571 0.000 238 0.4% 342 19.3% 11 45.4% - - - NULL C7orf70 84792 genome.wustl.edu 37 7 6370338 6370338 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037163.1 -1 validated p.P150S 0.000 93 0% 72 16.7% 13 23% probably_damaging(0.976) tolerated(0.46) neutral(0.430) NULL RAC1 5879 genome.wustl.edu 37 7 6441972 6441972 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018890.3 +1 reviewed p.S177 0.001 186 0% 163 28.8% 620 35.9% - - - HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases DAGLB 221955 genome.wustl.edu 37 7 6449881 6449881 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139179.3 -1 validated p.T567M 0.130 102 0% 107 29.9% 18 38.8% possibly_damaging(0.931) deleterious(0.01) deleterious(0.783) NULL DAGLB 221955 genome.wustl.edu 37 7 6456309 6456309 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139179.3 -1 validated p.A459V 0.373 68 0% 33 27.3% 20 25% benign(0.344) tolerated(0.27) neutral(0.142) HMMPfam_Lipase_3,superfamily_alpha/beta-Hydrolases DAGLB 221955 genome.wustl.edu 37 7 6470138 6470138 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139179.3 -1 validated p.T301M 0.861 90 0% 100 26% 11 18.1% probably_damaging(0.999) tolerated(0.05) deleterious(0.836) superfamily_alpha/beta-Hydrolases DAGLB 221955 genome.wustl.edu 37 7 6485657 6485657 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139179.3 -1 validated p.Y58* 1.000 202 0% 150 20.7% 5 0% - - - NULL GRID2IP 392862 genome.wustl.edu 37 7 6554154 6554154 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145118.1 -1 validated p.I425 0.037 197 0% 138 20.3% 0 - - - - NULL ZNF853 54753 genome.wustl.edu 37 7 6661324 6661324 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017560.1 +1 provisional p.Q234H 0.000 221 0% 222 18.5% 15 53.3% - - - NULL ENSG00000198580 0 genome.wustl.edu 37 7 6715817 6715817 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000401847 +1 known p.V332 0.537 66 0% 53 11.3% 0 - - - - superfamily_C2H2 and C2HC zinc fingers CCZ1B 221960 genome.wustl.edu 37 7 6854457 6854457 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198097.2 -1 predicted p.D240N 1.000 473 0% 291 33.7% 53 30.1% probably_damaging(0.988) deleterious(0.05) deleterious(0.783) HMMPfam_DUF2049 ICA1 3382 genome.wustl.edu 37 7 8167670 8167670 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004968.2 -1 reviewed p.G388D 0.988 192 0% 110 23.6% 52 46.1% benign(0.019) tolerated(0.62) neutral(0.005) HMMPfam_ICA69 ICA1 3382 genome.wustl.edu 37 7 8272267 8272267 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004968.2 -1 reviewed p.D46N 1.000 514 0% 146 19.9% 32 37.5% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Arfaptin LOC340268 340268 genome.wustl.edu 37 7 9766051 9766051 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_041608.1 +1 model NULL 0.919 66 0% 112 16.1% 0 - - - - - LOC340268 340268 genome.wustl.edu 37 7 9767148 9767148 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_041608.1 +1 model NULL 1.000 77 0% 87 18.4% 0 - - - - - PHF14 9678 genome.wustl.edu 37 7 11053398 11053398 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000303905 +1 known p.S357I 1.000 515 0% 279 21.5% 15 26.6% possibly_damaging(0.643) deleterious(0.04) deleterious(0.575) HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD THSD7A 221981 genome.wustl.edu 37 7 11422171 11422171 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.R1495M 1.000 395 0% 76 21.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL THSD7A 221981 genome.wustl.edu 37 7 11452283 11452283 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.D1228Y 1.000 491 0% 205 14.1% 1 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat THSD7A 221981 genome.wustl.edu 37 7 11464434 11464434 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.H1091R 1.000 307 0% 183 23% 0 - benign(0.003) tolerated(0.36) neutral(0.020) HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat THSD7A 221981 genome.wustl.edu 37 7 11582609 11582609 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.N530T 1.000 374 0% 435 17.2% 1 0% benign(0.042) tolerated(0.38) neutral(0.020) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat THSD7A 221981 genome.wustl.edu 37 7 11630185 11630185 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.T452M 1.000 101 0% 44 18.2% 1 0% probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat THSD7A 221981 genome.wustl.edu 37 7 11675780 11675780 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.K333N 1.000 282 0% 361 11.4% 0 - benign(0.328) tolerated(0.26) neutral(0.137) NULL THSD7A 221981 genome.wustl.edu 37 7 11675993 11675993 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015204.2 -1 validated p.T262 0.005 235 0% 303 23.1% 0 - - - - NULL TMEM106B 54664 genome.wustl.edu 37 7 12270056 12270056 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134232.1 +1 validated p.S208 1.000 432 0% 204 30.4% 16 18.7% - - - HMMPfam_DUF1356 VWDE 221806 genome.wustl.edu 37 7 12412759 12412759 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135924.1 -1 provisional p.C477 1.000 305 0% 130 20.8% 0 - - - - HMMSmart_SM00216 SCIN 85477 genome.wustl.edu 37 7 12644144 12644144 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112706.2 +1 validated p.I174M 1.000 513 0.4% 226 21.2% 6 16.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins ETV1 2115 genome.wustl.edu 37 7 13971324 13971324 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004956.4 -1 validated p.T202M 0.554 361 0% 201 17.4% 11 45.4% possibly_damaging(0.863) tolerated(0.14) deleterious(0.583) HMMPfam_ETS_PEA3_N ETV1 2115 genome.wustl.edu 37 7 13978819 13978819 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004956.4 -1 validated p.C96W 0.997 401 0% 318 13.5% 8 37.5% possibly_damaging(0.899) deleterious(0.01) deleterious(0.762) HMMPfam_ETS_PEA3_N DGKB 1607 genome.wustl.edu 37 7 14724886 14724886 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004080.2 -1 reviewed p.Q271H 1.000 150 0% 112 23.2% 0 - probably_damaging(0.999) tolerated(0.18) deleterious(0.546) HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain AGMO 392636 genome.wustl.edu 37 7 15240967 15240967 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004320.1 -1 provisional p.C427 0.016 340 0% 126 18.3% 0 - - - - NULL MEOX2 4223 genome.wustl.edu 37 7 15666536 15666536 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005924.4 -1 reviewed p.Q175H 1.000 886 0% 235 23.8% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_Homeodomain_like SOSTDC1 25928 genome.wustl.edu 37 7 16502230 16502230 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015464.2 -1 reviewed p.V188 0.672 478 0% 195 22.1% 52 59.6% - - - HMMPfam_Sclerostin SOSTDC1 25928 genome.wustl.edu 37 7 16502399 16502399 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015464.2 -1 reviewed p.R132Q 1.000 211 0.5% 90 14.4% 49 4% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Sclerostin SOSTDC1 25928 genome.wustl.edu 37 7 16502527 16502527 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015464.2 -1 reviewed p.C89 1.000 76 0% 47 34% 34 41.1% - - - HMMPfam_Sclerostin ANKMY2 57037 genome.wustl.edu 37 7 16649328 16649328 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020319.2 -1 validated p.S270N 1.000 334 0% 206 21.8% 19 31.5% possibly_damaging(0.517) deleterious(0.01) deleterious(0.580) NULL SNX13 23161 genome.wustl.edu 37 7 17841276 17841276 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015132.4 -1 reviewed p.P745T 1.000 211 0% 155 23.9% 9 55.5% benign(0.167) tolerated(0.4) neutral(0.031) NULL SNX13 23161 genome.wustl.edu 37 7 17874484 17874484 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015132.4 -1 reviewed p.S455F 1.000 163 0% 46 32.6% 4 25% probably_damaging(0.986) tolerated(0.08) deleterious(0.734) HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS PRPS1L1 221823 genome.wustl.edu 37 7 18067214 18067214 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175886.2 -1 reviewed p.N64 0.986 635 0% 345 20% 0 - - - - NULL MIR1302-6 100302140 genome.wustl.edu 37 7 18166887 18166887 + RNA SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000408466 -1 known NULL 0.023 511 0% 229 10.5% 0 - - - - - HDAC9 9734 genome.wustl.edu 37 7 18630059 18630059 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178425.2 +1 reviewed p.R122H 1.000 312 0% 96 22.9% 0 - probably_damaging(0.989) tolerated(0.28) deleterious(0.471) NULL TMEM196 256130 genome.wustl.edu 37 7 19812244 19812244 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152774.3 -1 validated p.V26M 1.000 39 0% 34 23.5% 0 - probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL ITGB8 3696 genome.wustl.edu 37 7 20418754 20418754 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002214.2 +1 reviewed p.A157T 1.000 198 0% 180 25% 7 71.4% probably_damaging(1) tolerated(0.19) deleterious(0.549) HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like ITGB8 3696 genome.wustl.edu 37 7 20418887 20418887 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002214.2 +1 reviewed p.S201I 1.000 303 0% 283 24% 7 71.4% probably_damaging(0.996) tolerated(0.25) deleterious(0.498) HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like ABCB5 340273 genome.wustl.edu 37 7 20687694 20687694 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000404938 +1 known p.S400Y 0.996 153 0.7% 75 29.3% 0 - possibly_damaging(0.912) deleterious(0) deleterious(0.808) superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCB5 340273 genome.wustl.edu 37 7 20691197 20691197 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178559.5 +1 validated p.R51I 0.280 527 0% 202 22.8% 0 - benign(0.007) tolerated(0.07) neutral(0.319) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCB5 340273 genome.wustl.edu 37 7 20698224 20698224 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178559.5 +1 validated p.K99N 1.000 329 0% 213 20.7% 0 - possibly_damaging(0.926) deleterious(0.04) deleterious(0.724) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases SP4 6671 genome.wustl.edu 37 7 21516865 21516865 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003112.3 +1 validated p.P616H 1.000 311 0% 129 22.5% 0 - possibly_damaging(0.791) deleterious(0.04) deleterious(0.645) NULL DNAH11 8701 genome.wustl.edu 37 7 21627760 21627760 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003777.3 +1 reviewed p.H597Y 0.648 476 0.2% 108 24.1% 0 - benign(0.038) tolerated(0.16) neutral(0.061) HMMPfam_DHC_N1 DNAH11 8701 genome.wustl.edu 37 7 21655863 21655863 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003777.3 +1 reviewed p.Q1350* 1.000 600 0% 185 22.2% 0 - - - - HMMPfam_DHC_N2 DNAH11 8701 genome.wustl.edu 37 7 21675657 21675657 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003777.3 +1 reviewed p.R1562* 1.000 449 0% 150 20% 0 - - - - HMMPfam_DHC_N2 DNAH11 8701 genome.wustl.edu 37 7 21775300 21775300 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003777.3 +1 reviewed p.F2502V 1.000 385 0% 178 20.8% 0 - possibly_damaging(0.46) deleterious(0) deleterious(0.596) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH11 8701 genome.wustl.edu 37 7 21781557 21781557 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003777.3 +1 reviewed p.V2650L 1.000 270 0% 123 22% 0 - probably_damaging(0.999) tolerated(0.12) deleterious(0.751) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH11 8701 genome.wustl.edu 37 7 21784598 21784598 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003777.3 +1 reviewed p.T2816 0.000 297 0.3% 93 24.7% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases IL6 3569 genome.wustl.edu 37 7 22768376 22768376 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000600.3 +1 reviewed p.L92P 0.995 287 0% 244 21.7% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_IL6,HMMSmart_SM00126,superfamily_4-helical cytokines NUPL2 11097 genome.wustl.edu 37 7 23224702 23224702 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007342.2 +1 validated p.R45 0.107 113 0% 192 21.9% 12 33.3% - - - NULL NUPL2 11097 genome.wustl.edu 37 7 23224878 23224878 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007342.2 +1 validated p.S104L 0.837 213 0% 227 25.6% 19 42.1% possibly_damaging(0.49) deleterious(0.03) deleterious(0.527) NULL GPNMB 10457 genome.wustl.edu 37 7 23299747 23299747 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000453162 +1 known p.R185C 0.171 323 0% 156 23.1% 48 0% - - - NULL IGF2BP3 10643 genome.wustl.edu 37 7 23358812 23358812 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006547.2 -1 reviewed p.G422D 1.000 301 0% 147 27.2% 16 56.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) TRA2A 29896 genome.wustl.edu 37 7 23545861 23545861 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013293.3 -1 reviewed p.G222 0.105 215 0% 148 20.9% 49 44.8% - - - superfamily_RNA-binding domain RBD MPP6 51678 genome.wustl.edu 37 7 24708165 24708165 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016447.2 +1 provisional p.P334S 1.000 366 0% 80 21.2% 4 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) superfamily_P-loop containing nucleoside triphosphate hydrolases DFNA5 1687 genome.wustl.edu 37 7 24745850 24745850 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127453.1 -1 reviewed p.S379I 0.062 180 0% 132 25% 11 0% possibly_damaging(0.765) deleterious(0) deleterious(0.728) HMMPfam_Gasdermin C7orf31 136895 genome.wustl.edu 37 7 25181891 25181891 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138811.3 -1 validated p.L307S 0.988 298 0% 178 19.7% 4 25% probably_damaging(0.962) deleterious(0) deleterious(0.850) NULL C7orf31 136895 genome.wustl.edu 37 7 25182309 25182309 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138811.3 -1 validated p.R270I 1.000 323 0% 124 25% 6 33.3% probably_damaging(0.983) tolerated(0.15) deleterious(0.670) NULL NFE2L3 9603 genome.wustl.edu 37 7 26225050 26225050 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004289.6 +1 reviewed p.L578F 0.979 249 0% 140 17.1% 112 46.4% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMSmart_BRLZ,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1 SKAP2 8935 genome.wustl.edu 37 7 26729958 26729958 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003930.3 -1 reviewed p.V274M 0.004 512 0% 163 23.3% 14 42.8% possibly_damaging(0.522) tolerated(0.1) neutral(0.462) superfamily_SH3-domain HOXA1 3198 genome.wustl.edu 37 7 27134294 27134294 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005522.4 -1 reviewed p.R258H 1.000 189 0% 261 21.5% 1 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like HOXA1 3198 genome.wustl.edu 37 7 27135352 27135352 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005522.4 -1 reviewed p.Q60H 1.000 18 0% 32 18.8% 0 - possibly_damaging(0.83) tolerated(0.07) deleterious(0.635) NULL HOXA2 3199 genome.wustl.edu 37 7 27140448 27140448 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006735.3 -1 reviewed p.S343N 1.000 146 0% 175 25.7% 2 50% probably_damaging(0.979) deleterious(0.01) deleterious(0.828) NULL HOXA2 3199 genome.wustl.edu 37 7 27142034 27142034 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006735.3 -1 reviewed p.A29D 1.000 255 0% 272 14% 0 - benign(0.025) tolerated(0.07) neutral(0.320) NULL HOXA3 3200 genome.wustl.edu 37 7 27148265 27148265 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030661.4 -1 reviewed p.A201T 1.000 97 0% 100 23% 2 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like HOXA6 3203 genome.wustl.edu 37 7 27185425 27185425 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024014.2 -1 reviewed p.R185H 1.000 247 0.4% 340 23.2% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like TAX1BP1 8887 genome.wustl.edu 37 7 27788285 27788285 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006024.5 +1 validated p.D48Y 1.000 246 0.4% 201 29.4% 69 39.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CALCOCO1 TAX1BP1 8887 genome.wustl.edu 37 7 27856094 27856094 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006024.5 +1 validated p.P631S 0.997 207 0% 89 19.1% 35 20% benign(0.014) tolerated(0.06) neutral(0.323) NULL CREB5 9586 genome.wustl.edu 37 7 28858853 28858853 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182898.2 +1 reviewed p.S495I 1.000 237 0.4% 163 19.6% 0 - unknown(0) deleterious(0.02) - NULL CHN2 1124 genome.wustl.edu 37 7 29407596 29407596 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004067.2 +1 reviewed p.P46H 1.000 372 0.3% 176 24.4% 3 0% possibly_damaging(0.486) tolerated(0.11) neutral(0.433) NULL NOD1 10392 genome.wustl.edu 37 7 30477216 30477216 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006092.2 -1 reviewed p.R837Q 1.000 232 0% 240 22.9% 4 50% possibly_damaging(0.923) tolerated(0.19) neutral(0.422) superfamily_SSF52047 GARS 2617 genome.wustl.edu 37 7 30651737 30651737 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002047.2 +1 reviewed p.G303R 1.000 165 0% 216 11.6% 57 5.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases GARS 2617 genome.wustl.edu 37 7 30672005 30672005 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002047.2 +1 reviewed p.H682 1.000 266 0% 134 27.6% 284 45.4% - - - HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS NEUROD6 63974 genome.wustl.edu 37 7 31377922 31377922 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022728.2 -1 provisional p.R321C 1.000 240 0% 262 22.1% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL NEUROD6 63974 genome.wustl.edu 37 7 31378474 31378474 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022728.2 -1 provisional p.R137* 1.000 273 0% 425 21.9% 0 - - - - HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain CCDC129 223075 genome.wustl.edu 37 7 31594131 31594131 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194300.2 +1 validated p.G69E 1.000 319 0% 176 17.6% 0 - benign(0.023) tolerated(1) neutral(0.001) NULL CCDC129 223075 genome.wustl.edu 37 7 31618048 31618048 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194300.2 +1 validated p.E390D 1.000 59 0% 30 23.3% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CCDC129 223075 genome.wustl.edu 37 7 31682656 31682656 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194300.2 +1 validated p.A558T 0.000 152 0% 55 20% 0 - benign(0.075) tolerated(0.23) neutral(0.046) NULL CCDC129 223075 genome.wustl.edu 37 7 31692241 31692241 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194300.2 +1 validated p.G978D 0.000 132 0% 32 28.1% 0 - benign(0.328) deleterious(0.02) deleterious(0.486) NULL KBTBD2 25948 genome.wustl.edu 37 7 32909804 32909804 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015483.2 -1 validated p.T342I 1.000 1054 0% 274 25.9% 19 26.3% benign(0.015) tolerated(0.21) neutral(0.044) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain FKBP9 11328 genome.wustl.edu 37 7 33014359 33014359 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007270.3 +1 validated p.G118R 1.000 228 0% 119 24.4% 19 5.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FKBP_C,superfamily_SSF54534 NT5C3 51251 genome.wustl.edu 37 7 33054347 33054347 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002010.1 -1 reviewed p.L336I 0.996 541 0% 351 14% 72 34.7% possibly_damaging(0.817) tolerated(0.24) neutral(0.346) HMMPfam_UMPH-1 BMPER 168667 genome.wustl.edu 37 7 34118477 34118477 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133468.3 +1 validated p.V363I 1.000 75 0% 126 19.8% 0 - possibly_damaging(0.916) tolerated(0.28) neutral(0.398) HMMSmart_VWD BMPER 168667 genome.wustl.edu 37 7 34192851 34192851 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133468.3 +1 validated p.R675M 1.000 124 0% 53 20.8% 0 - possibly_damaging(0.93) deleterious(0.02) deleterious(0.760) superfamily_Cysrich_TIL,HMMPfam_TIL NPSR1 387129 genome.wustl.edu 37 7 34851434 34851434 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207173.1 +1 reviewed p.R146I 1.000 372 0% 223 22.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like NPSR1 387129 genome.wustl.edu 37 7 34867038 34867038 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381544 +1 known p.D134N 0.023 188 0% 55 10.9% 0 - unknown(0) - - NULL DPY19L1 23333 genome.wustl.edu 37 7 35053194 35053194 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015283.1 -1 validated p.N106D 1.000 166 0% 136 22.8% 3 66.6% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_DUF2211 HERPUD2 64224 genome.wustl.edu 37 7 35673422 35673422 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022373.4 -1 validated p.E367* 1.000 576 0% 237 26.2% 23 21.7% - - - NULL SEPT7 989 genome.wustl.edu 37 7 35919531 35919531 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001788.4 +1 reviewed p.C204Y 1.000 212 0% 89 18% 92 42.3% possibly_damaging(0.939) deleterious(0) deleterious(0.829) HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases AOAH 313 genome.wustl.edu 37 7 36677463 36677463 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001637.3 -1 reviewed p.P148 0.000 629 0% 212 23.1% 11 0% - - - NULL TXNDC3 51314 genome.wustl.edu 37 7 37916495 37916495 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016616.4 +1 reviewed p.A294T 0.000 237 0% 69 27.5% 0 - benign(0) tolerated(0.52) neutral(0.009) superfamily_NDK TXNDC3 51314 genome.wustl.edu 37 7 37923916 37923916 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016616.4 +1 reviewed p.R336C 0.001 533 0% 136 16.9% 0 - possibly_damaging(0.501) tolerated(0.05) deleterious(0.513) HMMSmart_NDK,superfamily_NDK TARP 445347 genome.wustl.edu 37 7 38305264 38305264 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003799.1 -1 reviewed p.Q2* 0.000 349 0% 119 27.7% 3 0% benign(0.004) deleterious(0.04) neutral(0.349) NULL TRGV9 6983 genome.wustl.edu 37 7 38356853 38356853 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000444775 -1 known p.V44A 0.009 150 0% 168 28% 7 0% possibly_damaging(0.583) tolerated(0.53) neutral(0.208) HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726 TRGV5 6978 genome.wustl.edu 37 7 38389192 38389192 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390344 -1 known p.T40A 0.000 329 0% 120 18.3% 0 - possibly_damaging(0.902) tolerated(0.46) neutral(0.369) HMMPfam_V-set,superfamily_Immunoglobulin VPS41 27072 genome.wustl.edu 37 7 38791798 38791798 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014396.3 -1 reviewed p.S635I 1.000 481 0% 307 13% 16 37.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat CDK13 8621 genome.wustl.edu 37 7 40117669 40117669 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003718.4 +1 reviewed p.T949I 1.000 609 0% 196 32.1% 12 75% possibly_damaging(0.922) deleterious(0.05) deleterious(0.717) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase INHBA 3624 genome.wustl.edu 37 7 41730062 41730062 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002192.2 -1 reviewed p.W156* 1.000 145 0% 107 15.9% 1 0% - - - HMMPfam_TGFb_propeptide GLI3 2737 genome.wustl.edu 37 7 42005096 42005096 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000168.5 -1 reviewed p.G1192V 1.000 58 0% 71 31% 1 0% probably_damaging(0.986) deleterious(0) deleterious(0.879) NULL GLI3 2737 genome.wustl.edu 37 7 42007393 42007393 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000168.5 -1 reviewed p.I744 0.044 530 0.8% 597 23.5% 2 0% - - - NULL MRPL32 64983 genome.wustl.edu 37 7 42976966 42976966 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031903.2 +1 reviewed p.H120Y 0.998 341 0% 159 25.8% 163 35.5% benign(0.004) tolerated(0.12) neutral(0.261) NULL HECW1 23072 genome.wustl.edu 37 7 43477705 43477705 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015052.3 +1 validated p.S302L 1.000 180 0% 171 9.9% 0 - probably_damaging(0.987) deleterious(0.03) deleterious(0.801) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB HECW1 23072 genome.wustl.edu 37 7 43594325 43594325 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015052.3 +1 validated p.R1549C 1.000 133 0% 107 22.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT STK17A 9263 genome.wustl.edu 37 7 43635616 43635616 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004760.2 +1 reviewed p.E108A 1.000 337 0% 191 13.1% 23 8.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase BLVRA 644 genome.wustl.edu 37 7 43840105 43840105 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000712.3 +1 validated p.E132K 1.000 255 0% 61 21.3% 54 9.2% possibly_damaging(0.88) tolerated(0.18) neutral(0.399) HMMPfam_Biliv-reduc_cat,superfamily_NAD(P)-bd,superfamily_SSF55347 URGCP 55665 genome.wustl.edu 37 7 43917785 43917785 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077663.1 -1 validated p.S426I 0.972 166 0% 140 22.9% 15 53.3% benign(0.317) deleterious(0.04) neutral(0.448) NULL DBNL 28988 genome.wustl.edu 37 7 44099001 44099001 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122956.1 +1 validated p.T304I 0.000 80 0% 63 25.4% 106 26.4% benign(0.007) tolerated(0.22) neutral(0.042) NULL PGAM2 5224 genome.wustl.edu 37 7 44104827 44104827 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000290.3 -1 reviewed p.A101V 1.000 106 0% 100 27% 2 50% possibly_damaging(0.605) deleterious(0) deleterious(0.654) HMMPfam_PGAM,superfamily_SSF53254 AEBP1 165 genome.wustl.edu 37 7 44147429 44147429 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129.3 +1 reviewed p.K254R 1.000 30 0% 51 25.5% 11 0% possibly_damaging(0.484) deleterious(0.02) deleterious(0.543) NULL AEBP1 165 genome.wustl.edu 37 7 44151512 44151512 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129.3 +1 reviewed p.L634M 1.000 103 0% 138 24.6% 39 0% probably_damaging(0.958) tolerated(0.1) deleterious(0.688) HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases AEBP1 165 genome.wustl.edu 37 7 44153705 44153705 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129.3 +1 reviewed p.E1108K 0.013 486 0% 444 23.2% 86 1.1% unknown(0) deleterious(0) - NULL POLD2 5425 genome.wustl.edu 37 7 44154524 44154524 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127218.1 -1 validated p.L424M 1.000 62 0% 77 18.2% 344 43.6% probably_damaging(1) tolerated(0.22) deleterious(0.542) NULL GCK 2645 genome.wustl.edu 37 7 44189604 44189604 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033507.1 -1 reviewed p.V182 0.835 227 0% 200 16% 0 - - - - HMMPfam_Hexokinase_1,superfamily_SSF53067 YKT6 10652 genome.wustl.edu 37 7 44247029 44247029 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006555.3 +1 reviewed p.P111S 1.000 169 0% 159 20.1% 52 30.7% benign(0.015) tolerated(0.6) neutral(0.005) HMMPfam_Synaptobrevin,superfamily_SNARE-like OGDH 4967 genome.wustl.edu 37 7 44721381 44721381 + Silent SNP C C A rs61756132 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002541.3 +1 reviewed p.T423 0.923 425 0% 182 13.7% 53 16.9% - - - HMMPfam_E1_dh,superfamily_SSF52518 OGDH 4967 genome.wustl.edu 37 7 44736085 44736085 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002541.3 +1 reviewed p.T610M 0.001 288 0% 184 26.1% 28 25% benign(0.298) tolerated(0.07) neutral(0.411) NULL MYO1G 64005 genome.wustl.edu 37 7 45016199 45016199 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033054.2 -1 validated p.A121V 1.000 195 0% 209 19.1% 7 0% probably_damaging(0.968) tolerated(0.06) deleterious(0.732) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO1G 64005 genome.wustl.edu 37 7 45018481 45018481 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033054.2 -1 validated p.R27M 1.000 188 0% 181 17.7% 4 0% benign(0.004) deleterious(0.01) neutral(0.406) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases NACAD 23148 genome.wustl.edu 37 7 45122598 45122598 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000258775 -1 known p.G1061C 0.012 48 0% 66 19.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NACAD 23148 genome.wustl.edu 37 7 45122752 45122752 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000490531 -1 known p.L1005R 0.000 31 0% 67 14.9% 2 0% - - - NULL NACAD 23148 genome.wustl.edu 37 7 45124555 45124555 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000258775 -1 known p.E408D 1.000 44 0% 69 20.3% 2 0% possibly_damaging(0.741) deleterious(0) deleterious(0.716) NULL PKD1L1 168507 genome.wustl.edu 37 7 47851554 47851554 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138295.2 -1 reviewed p.P2481H 0.996 134 0% 125 10.4% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PKD_channel C7orf69 80099 genome.wustl.edu 37 7 47857657 47857657 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025031.2 +1 validated p.L48F 0.000 536 0% 508 23.4% 0 - unknown(0) - - NULL PKD1L1 168507 genome.wustl.edu 37 7 47870947 47870947 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138295.2 -1 reviewed p.P2114L 0.013 86 0% 52 32.7% 0 - probably_damaging(0.978) tolerated(0.08) deleterious(0.720) NULL HUS1 3364 genome.wustl.edu 37 7 48016376 48016376 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004507.2 -1 reviewed p.P139H 0.998 274 0% 384 21.4% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hus1 UPP1 7378 genome.wustl.edu 37 7 48147072 48147072 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003364.2 +1 validated p.F254Y 1.000 63 0% 63 27% 82 36.5% possibly_damaging(0.816) deleterious(0) deleterious(0.753) HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases ABCA13 154664 genome.wustl.edu 37 7 48237861 48237861 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152701.3 +1 reviewed p.S64I 0.993 441 0% 520 21.3% 0 - probably_damaging(0.991) - - NULL ABCA13 154664 genome.wustl.edu 37 7 48237898 48237898 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152701.3 +1 reviewed p.C76 1.000 421 0% 465 24.1% 0 - - - - NULL ABCA13 154664 genome.wustl.edu 37 7 48285602 48285602 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152701.3 +1 reviewed p.K545T 0.016 254 0% 86 23.3% 0 - possibly_damaging(0.647) - - NULL ABCA13 154664 genome.wustl.edu 37 7 48311451 48311451 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152701.3 +1 reviewed p.M730V 0.000 210 0% 115 10.4% 0 - benign(0) - - NULL ABCA13 154664 genome.wustl.edu 37 7 48313001 48313001 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152701.3 +1 reviewed p.K1246N 0.033 144 0% 40 22.5% 0 - probably_damaging(0.978) - - NULL ABCA13 154664 genome.wustl.edu 37 7 48413990 48413990 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152701.3 +1 reviewed p.T3727I 1.000 447 0% 138 18.8% 1 0% probably_damaging(1) - - NULL ABCA13 154664 genome.wustl.edu 37 7 48619943 48619943 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000453246 +1 known p.R1092W 0.117 208 0% 70 20% 0 - - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases C7orf72 100130988 genome.wustl.edu 37 7 50173814 50173814 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000297001 +1 known p.R280I 1.000 151 0% 54 16.7% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL IKZF1 10320 genome.wustl.edu 37 7 50455117 50455117 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000331340 +1 known p.R222C 1.000 69 0% 66 24.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FIGNL1 63979 genome.wustl.edu 37 7 50514297 50514297 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042762.1 -1 validated p.S230I 0.002 122 0.8% 146 21.2% 2 100% benign(0.086) tolerated(0.09) neutral(0.303) NULL DDC 1644 genome.wustl.edu 37 7 50566934 50566934 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000790.3 -1 reviewed p.K263M 0.854 79 0% 45 24.4% 1 0% possibly_damaging(0.88) deleterious(0.01) deleterious(0.749) HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases GRB10 2887 genome.wustl.edu 37 7 50660735 50660735 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.L567M 1.000 227 0.4% 122 32% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain GRB10 2887 genome.wustl.edu 37 7 50663213 50663213 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.R520H 1.000 275 0% 172 20.3% 7 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain GRB10 2887 genome.wustl.edu 37 7 50672037 50672037 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.S476I 1.000 302 0% 195 14.4% 4 0% benign(0.052) deleterious(0.01) neutral(0.409) superfamily_SH2 domain GRB10 2887 genome.wustl.edu 37 7 50672047 50672047 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.G473C 0.857 298 0% 199 25.1% 3 33.3% possibly_damaging(0.754) deleterious(0.03) deleterious(0.643) superfamily_SH2 domain GRB10 2887 genome.wustl.edu 37 7 50673052 50673052 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.G442* 1.000 196 0% 139 19.4% 5 0% - - - HMMPfam_BPS GRB10 2887 genome.wustl.edu 37 7 50682506 50682506 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.K352N 1.000 162 0% 147 18.4% 4 75% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like GRB10 2887 genome.wustl.edu 37 7 50737551 50737551 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005311.4 -1 reviewed p.Q124 0.997 66 0% 49 12.2% 4 50% - - - NULL COBL 23242 genome.wustl.edu 37 7 51203952 51203952 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015198.3 -1 validated p.S287I 1.000 163 0% 82 22% 10 50% benign(0.121) tolerated(0.37) neutral(0.028) HMMPfam_Cobl COBL 23242 genome.wustl.edu 37 7 51261160 51261160 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452534 -1 known p.W43R 0.981 455 0% 225 19.6% 5 60% - - - HMMPfam_Cobl POM121L12 285877 genome.wustl.edu 37 7 53103476 53103476 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182595.3 +1 validated p.S38R 0.000 9 0.000 17 0.294 0 - benign(0.418) tolerated(0.2) neutral(0.184) NULL EGFR 1956 genome.wustl.edu 37 7 55219021 55219021 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005228.3 +1 reviewed p.S198R 1.000 279 0% 285 20% 1 100% probably_damaging(0.976) tolerated(1) neutral(0.418) HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_L domain-like EGFR 1956 genome.wustl.edu 37 7 55229314 55229314 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005228.3 +1 reviewed p.L541I 0.010 141 0% 129 27.9% 2 50% benign(0) tolerated(0.66) neutral(0.003) HMMSmart_SM00261,superfamily_Growth factor receptor domain EGFR 1956 genome.wustl.edu 37 7 55231465 55231465 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005228.3 +1 reviewed p.Q557 1.000 194 0% 144 15.3% 2 50% - - - HMMSmart_SM00261,superfamily_Growth factor receptor domain EGFR 1956 genome.wustl.edu 37 7 55273176 55273176 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005228.3 +1 reviewed p.L1167M 1.000 148 0% 102 14.7% 7 0% probably_damaging(1) tolerated(0.24) deleterious(0.537) NULL VOPP1 81552 genome.wustl.edu 37 7 55588790 55588790 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030796.3 -1 validated p.E30K 1.000 315 0% 190 21.1% 14 0% benign(0.35) deleterious(0) deleterious(0.555) NULL SEPT14 346288 genome.wustl.edu 37 7 55886883 55886883 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207366.2 -1 validated p.D252Y 0.564 327 0% 202 10.9% 0 - probably_damaging(0.993) deleterious(0.01) deleterious(0.856) HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases GBAS 2631 genome.wustl.edu 37 7 56065085 56065085 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001483.1 +1 reviewed p.D247Y 1.000 561 0% 235 12.8% 67 17.9% benign(0.422) deleterious(0) deleterious(0.582) HMMPfam_NIPSNAP SUMF2 25870 genome.wustl.edu 37 7 56136261 56136261 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130069.1 +1 reviewed p.G71W 0.988 209 0% 184 17.4% 97 42.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_DUF323 PHKG1 5260 genome.wustl.edu 37 7 56154686 56154686 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006213.3 -1 reviewed p.T98 1.000 335 0.3% 230 24.3% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PHKG1 5260 genome.wustl.edu 37 7 56156613 56156613 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006213.3 -1 reviewed p.P8S 1.000 233 0% 187 27.3% 1 0% probably_damaging(0.966) deleterious(0.01) deleterious(0.814) NULL LOC100130849 100130849 genome.wustl.edu 37 7 56945170 56945170 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001719090.1 -1 model p.V82I 1.000 25 0% 28 25% 0 - - - - NULL ZNF479 90827 genome.wustl.edu 37 7 57188750 57188750 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033273.1 -1 provisional p.Q124 0.001 486 0% 145 8.3% 0 - - - - NULL ZNF716 441234 genome.wustl.edu 37 7 57522226 57522226 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342727.1 +1 model p.D34N 0.005 547 0% 224 23.2% 0 - probably_damaging(0.999) tolerated(0.13) deleterious(0.743) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF107 51427 genome.wustl.edu 37 7 64168730 64168730 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013746.1 +1 validated p.K683T 0.996 88 0% 77 15.6% 3 0% probably_damaging(1) tolerated(0.4) deleterious(0.516) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF273 10793 genome.wustl.edu 37 7 64389319 64389319 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021148.2 +1 reviewed p.G538E 0.996 256 0.4% 187 20.3% 4 25% benign(0.004) deleterious(0.02) neutral(0.383) superfamily_C2H2 and C2HC zinc fingers ZNF117 51351 genome.wustl.edu 37 7 64439793 64439793 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015852.3 -1 validated p.G52 0.001 311 0% 190 23.7% 2 0% - - - NULL ERV3-1 2086 genome.wustl.edu 37 7 64452628 64452628 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007253.3 -1 reviewed p.E259D 0.844 174 0.6% 74 10.8% 3 33.3% possibly_damaging(0.741) deleterious(0) deleterious(0.716) NULL ERV3-1 2086 genome.wustl.edu 37 7 64452809 64452809 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007253.3 -1 reviewed p.S199Y 0.578 282 0% 132 25% 1 0% possibly_damaging(0.578) deleterious(0.04) deleterious(0.547) NULL VKORC1L1 154807 genome.wustl.edu 37 7 65419147 65419147 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173517.3 +1 validated p.L131M 1.000 222 0% 136 25.7% 57 61.4% probably_damaging(0.965) deleterious(0.01) deleterious(0.812) HMMPfam_VKOR,HMMSmart_VKc ASL 435 genome.wustl.edu 37 7 65557062 65557062 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000048.3 +1 reviewed p.V378I 1.000 100 0% 116 34.5% 66 60.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_L-Aspartase-like TPST1 8460 genome.wustl.edu 37 7 65705531 65705531 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003596.3 +1 validated p.Q40R 0.987 179 0% 88 11.4% 11 18.1% benign(0.055) tolerated(0.68) neutral(0.005) NULL TYW1 55253 genome.wustl.edu 37 7 66563552 66563552 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018264.2 +1 validated p.R470H 1.000 466 0% 129 24.8% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes TYW1 55253 genome.wustl.edu 37 7 66703338 66703338 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018264.2 +1 validated p.R674H 1.000 647 0% 262 17.6% 9 44.4% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL LOC442572 442572 genome.wustl.edu 37 7 66747628 66747628 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_499314.5 +1 model p.P206H 0.254 468 0.2% 311 6.4% 0 - - - - NULL AUTS2 26053 genome.wustl.edu 37 7 69364327 69364327 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015570.2 +1 validated p.T122I 0.995 218 0% 66 27.3% 1 0% benign(0.235) tolerated(0.43) neutral(0.037) NULL POM121 9883 genome.wustl.edu 37 7 72411388 72411388 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172020.1 +1 reviewed p.P302S 0.009 731 0.1% 584 16.3% 5 20% probably_damaging(0.994) tolerated(0.26) deleterious(0.486) NULL POM121 9883 genome.wustl.edu 37 7 72412874 72412874 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172020.1 +1 reviewed p.P516H 0.004 438 0% 364 11.5% 14 35.7% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) NULL POM121 9883 genome.wustl.edu 37 7 72413338 72413338 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172020.1 +1 reviewed p.P671S 0.041 216 0% 204 12.3% 6 0% possibly_damaging(0.948) tolerated(0.25) neutral(0.428) NULL TRIM74 378108 genome.wustl.edu 37 7 72436426 72436426 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198853.1 -1 provisional p.V88A 0.713 149 0% 185 14.6% 3 33.3% possibly_damaging(0.793) deleterious(0.03) deleterious(0.662) HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box FKBP6 8468 genome.wustl.edu 37 7 72743470 72743470 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000445032 +1 known p.A95T 0.000 830 0% 730 24.4% 0 - unknown(0) - - NULL BAZ1B 9031 genome.wustl.edu 37 7 72873950 72873950 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032408.3 -1 validated p.K1116 0.996 811 0% 391 22.8% 33 42.4% - - - NULL BAZ1B 9031 genome.wustl.edu 37 7 72891815 72891815 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032408.3 -1 validated p.L659S 0.986 349 0% 201 21.9% 19 36.8% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMSmart_SM00571 BAZ1B 9031 genome.wustl.edu 37 7 72903603 72903603 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032408.3 -1 validated p.P271H 1.000 451 0.2% 195 22.1% 18 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MLXIPL 51085 genome.wustl.edu 37 7 73010180 73010180 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032951.2 -1 reviewed p.A726 0.009 79 0% 79 17.7% 12 8.3% - - - superfamily_HLH helix-loop-helix DNA-binding domain ABHD11 83451 genome.wustl.edu 37 7 73152336 73152336 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145363.1 -1 validated p.P142H 0.000 117 0% 135 23% 3 66.6% - - - NULL WBSCR27 155368 genome.wustl.edu 37 7 73256419 73256419 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152559.2 -1 reviewed p.A18T 0.048 52 0% 40 22.5% 11 45.4% benign(0.001) tolerated(0.69) neutral(0.002) NULL ELN 2006 genome.wustl.edu 37 7 73456975 73456975 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000501.2 +1 reviewed p.P88 0.005 101 0% 78 28.2% 3 0% - - - NULL CLIP2 7461 genome.wustl.edu 37 7 73790748 73790748 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003388.4 +1 reviewed p.L673M 0.994 41 0% 37 18.9% 7 28.5% benign(0.175) deleterious(0.05) neutral(0.361) NULL CLIP2 7461 genome.wustl.edu 37 7 73791029 73791029 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000493166 +1 known p.T2M 0.993 41 0% 32 34.4% 13 30.7% - - - NULL CLIP2 7461 genome.wustl.edu 37 7 73791041 73791041 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000493166 +1 known p.S6N 1.000 38 0% 31 16.1% 12 41.6% - - - NULL GTF2IRD1 9569 genome.wustl.edu 37 7 73922473 73922473 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016328.1 +1 reviewed p.N21K 0.003 35 0% 55 21.8% 16 25% benign(0.013) tolerated(0.19) neutral(0.050) NULL GTF2IRD1 9569 genome.wustl.edu 37 7 73933848 73933848 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016328.1 +1 reviewed p.V239M 0.675 55 0% 48 35.4% 30 50% benign(0.345) tolerated(0.06) neutral(0.431) NULL GTF2IRD1 9569 genome.wustl.edu 37 7 74005275 74005275 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000470715 +1 known p.R218* 0.342 86 0% 68 22.1% 70 50% - - - HMMPfam_GTF2I GTF2I 2969 genome.wustl.edu 37 7 74105401 74105401 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032999.2 +1 reviewed p.V66I 1.000 340 0% 188 23.4% 47 31.9% possibly_damaging(0.476) deleterious(0.05) deleterious(0.502) NULL GTF2I 2969 genome.wustl.edu 37 7 74105415 74105415 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032999.2 +1 reviewed p.K70N 0.998 324 0% 168 18.5% 39 53.8% benign(0.313) deleterious(0.01) deleterious(0.503) NULL GTF2IRD2 84163 genome.wustl.edu 37 7 74211961 74211961 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173537.2 -1 validated p.G630 0.058 225 0% 160 20% 3 33.3% - - - NULL GTF2IRD2 84163 genome.wustl.edu 37 7 74212342 74212342 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173537.2 -1 validated p.T503 0.004 291 0% 186 34.9% 1 100% - - - NULL GTF2IRD2B 389524 genome.wustl.edu 37 7 74524810 74524810 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003795.2 +1 reviewed p.E18D 0.993 653 0.2% 477 13.8% 8 25% benign(0.004) tolerated(0.46) neutral(0.012) NULL GTF2IRD2B 389524 genome.wustl.edu 37 7 74564503 74564503 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003795.2 +1 reviewed p.I750 0.948 486 0% 298 13.4% 8 37.5% - - - NULL HIP1 3092 genome.wustl.edu 37 7 75183439 75183439 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005338.4 -1 reviewed p.L711I 1.000 140 0% 139 20.9% 17 41.1% benign(0.418) deleterious(0.04) deleterious(0.484) NULL HIP1 3092 genome.wustl.edu 37 7 75197530 75197530 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005338.4 -1 reviewed p.R259Q 1.000 343 0% 288 21.2% 10 70% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ANTH,superfamily_ARM repeat CCL24 6369 genome.wustl.edu 37 7 75442700 75442700 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002991.2 -1 reviewed p.S39P 0.165 130 0% 58 17.2% 1 0% benign(0.016) deleterious(0.01) neutral(0.406) HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8 POR 5447 genome.wustl.edu 37 7 75615356 75615356 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000447222 +1 known p.R646C 1.000 62 0% 41 24.4% 242 45.8% - - - HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain POR 5447 genome.wustl.edu 37 7 75615476 75615476 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000941.2 +1 reviewed e14-1 1.000 110 0% 100 25% 7 100% - - - - STYXL1 51657 genome.wustl.edu 37 7 75659772 75659772 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016086.2 -1 validated p.R24G 1.000 561 0% 268 22.8% 54 46.2% probably_damaging(0.996) tolerated(0.59) neutral(0.466) HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase MDH2 4191 genome.wustl.edu 37 7 75694218 75694218 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005918.2 +1 reviewed p.V278I 1.000 258 0.4% 202 25.7% 676 40.3% benign(0.152) tolerated(0.06) neutral(0.336) HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C DTX2 113878 genome.wustl.edu 37 7 76134824 76134824 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102594.1 +1 validated p.T592M 0.970 103 0% 88 21.6% 47 34% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CCDC146 57639 genome.wustl.edu 37 7 76908093 76908093 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020879.2 +1 validated p.E489* 0.998 396 0% 124 16.1% 4 0% - - - NULL PION 54103 genome.wustl.edu 37 7 76984623 76984623 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017439.3 -1 validated p.Q415H 0.320 135 0% 45 24.4% 3 0% benign(0.002) tolerated(0.11) neutral(0.272) NULL PTPN12 5782 genome.wustl.edu 37 7 77265139 77265139 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002835.3 +1 reviewed p.Q705H 0.982 202 0% 80 12.5% 54 44.4% probably_damaging(0.995) tolerated(0.1) deleterious(0.744) NULL PHTF2 57157 genome.wustl.edu 37 7 77558579 77558579 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127357.1 +1 validated p.D391Y 1.000 487 0.2% 185 25.9% 7 42.8% possibly_damaging(0.946) deleterious(0) deleterious(0.835) NULL PHTF2 57157 genome.wustl.edu 37 7 77572076 77572076 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127357.1 +1 validated p.I610 0.994 520 0% 548 19.5% 6 50% - - - NULL PHTF2 57157 genome.wustl.edu 37 7 77579094 77579094 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127357.1 +1 validated p.L653I 1.000 514 0.2% 268 20.9% 5 20% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MAGI2 9863 genome.wustl.edu 37 7 77756682 77756682 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012301.3 -1 reviewed p.Q1085H 1.000 262 0% 197 29.9% 0 - benign(0.006) tolerated(0.08) neutral(0.300) NULL MAGI2 9863 genome.wustl.edu 37 7 77764507 77764507 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012301.3 -1 reviewed p.I954 0.065 207 0.5% 152 27.6% 0 - - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like MAGI2 9863 genome.wustl.edu 37 7 77824258 77824258 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012301.3 -1 reviewed p.A734 1.000 472 0% 195 11.8% 0 - - - - NULL MAGI2 9863 genome.wustl.edu 37 7 78150809 78150809 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012301.3 -1 reviewed p.P231H 1.000 446 0.2% 231 24.7% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMSmart_SM00072 GNAT3 346562 genome.wustl.edu 37 7 80088031 80088031 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102386.1 -1 provisional p.D341Y 1.000 348 0% 98 16.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases SEMA3C 10512 genome.wustl.edu 37 7 80374221 80374221 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006379.2 -1 validated p.P749T 1.000 245 0% 89 20.2% 9 11.1% possibly_damaging(0.863) deleterious(0.01) deleterious(0.739) NULL PCLO 27445 genome.wustl.edu 37 7 82545767 82545767 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426442 -1 known p.P123L 0.948 758 0% 255 20.8% 0 - - - - NULL PCLO 27445 genome.wustl.edu 37 7 82583827 82583827 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033026.5 -1 validated p.D2148N 0.993 315 0% 139 21.6% 0 - probably_damaging(0.995) - - NULL PCLO 27445 genome.wustl.edu 37 7 82764109 82764109 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033026.5 -1 validated p.Q919 1.000 159 0% 200 26% 1 100% - - - NULL SEMA3D 223117 genome.wustl.edu 37 7 84647580 84647580 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152754.2 -1 validated p.L511 0.999 169 0% 41 22% 0 - - - - HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema SEMA3D 223117 genome.wustl.edu 37 7 84727282 84727282 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152754.2 -1 validated e2-1 1.000 113 0% 69 24.6% 0 - - - - - GRM3 2913 genome.wustl.edu 37 7 86394844 86394844 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000840.2 +1 reviewed p.P128L 1.000 272 0% 69 20.3% 0 - benign(0.079) tolerated(0.17) neutral(0.065) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I KIAA1324L 222223 genome.wustl.edu 37 7 86541449 86541449 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142749.2 -1 validated p.S703I 1.000 216 0% 45 28.9% 5 100% probably_damaging(0.981) deleterious(0) deleterious(0.870) superfamily_Mannose 6-phosphate receptor domain KIAA1324L 222223 genome.wustl.edu 37 7 86577218 86577218 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142749.2 -1 validated p.E111* 1.000 248 0% 152 23% 2 0% - - - superfamily_Growth factor receptor domain CROT 54677 genome.wustl.edu 37 7 87022269 87022269 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143935.1 +1 reviewed p.G563V 1.000 464 0.4% 136 25% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases ABCB4 5244 genome.wustl.edu 37 7 87041219 87041219 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018849.2 -1 reviewed p.D972Y 0.991 119 0% 63 20.6% 0 - benign(0.296) tolerated(0.71) neutral(0.093) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCB4 5244 genome.wustl.edu 37 7 87047862 87047862 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018849.2 -1 reviewed p.Q823H 1.000 271 0% 55 23.6% 1 0% benign(0.006) tolerated(0.07) neutral(0.319) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCB4 5244 genome.wustl.edu 37 7 87053309 87053309 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018849.2 -1 reviewed p.W708* 1.000 300 0% 113 15.9% 0 - - - - superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCB1 5243 genome.wustl.edu 37 7 87178786 87178786 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000927.3 -1 reviewed p.Q535* 1.000 233 0% 141 19.9% 3 0% - - - HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCB1 5243 genome.wustl.edu 37 7 87183158 87183158 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000927.3 -1 reviewed p.I306 1.000 532 0.2% 257 21.4% 3 0% - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCB1 5243 genome.wustl.edu 37 7 87190600 87190600 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000927.3 -1 reviewed p.G269E 1.000 320 0% 144 11.1% 2 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain RUNDC3B 154661 genome.wustl.edu 37 7 87339910 87339910 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138290.2 +1 validated p.L150F 1.000 84 0% 64 18.8% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_RUN,HMMSmart_SM00593 DBF4 10926 genome.wustl.edu 37 7 87514369 87514369 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006716.3 +1 validated p.L99 0.763 183 0% 180 22.8% 10 50% - - - NULL DBF4 10926 genome.wustl.edu 37 7 87514429 87514429 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006716.3 +1 validated p.P119S 1.000 205 0% 178 15.2% 7 14.2% possibly_damaging(0.731) tolerated(0.13) deleterious(0.520) NULL DBF4 10926 genome.wustl.edu 37 7 87516682 87516682 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006716.3 +1 validated p.L163 1.000 313 0% 359 20.6% 7 42.8% - - - NULL STEAP4 79689 genome.wustl.edu 37 7 87912378 87912378 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024636.2 -1 validated p.E188* 1.000 220 0% 74 20.3% 0 - - - - HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains C7orf62 219557 genome.wustl.edu 37 7 88424061 88424061 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152706.2 -1 predicted p.A66T 0.000 267 0% 59 15.3% 0 - benign(0.006) tolerated(0.53) neutral(0.007) NULL ZNF804B 219578 genome.wustl.edu 37 7 88847528 88847528 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181646.2 +1 provisional p.Y56 1.000 288 0% 278 24.1% 0 - - - - HMMSmart_ZnF_C2H2 ZNF804B 219578 genome.wustl.edu 37 7 88964446 88964446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181646.2 +1 provisional p.S717I 0.002 222 0% 134 24.6% 0 - benign(0.015) deleterious(0.04) neutral(0.349) NULL ZNF804B 219578 genome.wustl.edu 37 7 88965417 88965417 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181646.2 +1 provisional p.N1041H 1.000 209 0% 103 21.4% 0 - possibly_damaging(0.69) deleterious(0.05) deleterious(0.593) NULL MTERF 7978 genome.wustl.edu 37 7 91503069 91503069 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006980.3 -1 validated p.E347K 1.000 300 0.3% 181 26.5% 6 33.3% benign(0.004) tolerated(0.14) neutral(0.249) HMMPfam_mTERF,HMMSmart_SM00733 MTERF 7978 genome.wustl.edu 37 7 91503097 91503097 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006980.3 -1 validated p.E337D 0.998 285 0% 163 14.1% 6 50% benign(0.003) tolerated(0.39) neutral(0.016) HMMPfam_mTERF,HMMSmart_SM00733 AKAP9 10142 genome.wustl.edu 37 7 91645451 91645451 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005751.4 +1 reviewed p.C1207 0.900 319 0% 286 17.1% 1 100% - - - NULL AKAP9 10142 genome.wustl.edu 37 7 91671364 91671364 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005751.4 +1 reviewed p.S1641F 1.000 255 0% 133 22.6% 3 0% probably_damaging(0.998) tolerated(0.13) deleterious(0.727) NULL CYP51A1 1595 genome.wustl.edu 37 7 91755649 91755649 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000786.3 -1 reviewed p.A230T 1.000 224 0% 230 12.6% 14 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_p450,superfamily_Cytochrome P450 ERVW-1 30816 genome.wustl.edu 37 7 92098739 92098739 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014590.3 -1 reviewed p.P319 0.186 545 0% 343 19% 0 - - - - HMMPfam_TLV_coat PEX1 5189 genome.wustl.edu 37 7 92120649 92120649 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000466.2 -1 reviewed p.M1125I 1.000 343 0% 140 22.1% 28 57.1% benign(0) tolerated(0.28) neutral(0.032) NULL SAMD9 54809 genome.wustl.edu 37 7 92731807 92731807 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017654.2 -1 validated p.E1202* 1.000 309 0% 227 21.1% 10 30% - - - NULL SAMD9 54809 genome.wustl.edu 37 7 92733358 92733358 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017654.2 -1 validated p.R685* 0.994 326 0% 176 18.2% 5 20% - - - NULL SAMD9 54809 genome.wustl.edu 37 7 92735110 92735110 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017654.2 -1 validated p.V101M 0.000 672 0% 586 23.7% 3 0% possibly_damaging(0.604) tolerated(0.16) neutral(0.269) NULL SAMD9L 219285 genome.wustl.edu 37 7 92762752 92762752 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152703.2 -1 validated p.P845T 1.000 232 0% 50 16% 15 13.3% probably_damaging(0.999) tolerated(0.62) deleterious(0.494) NULL SAMD9L 219285 genome.wustl.edu 37 7 92763359 92763359 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152703.2 -1 validated p.S642 0.000 189 0% 54 22.2% 4 0% - - - NULL SAMD9L 219285 genome.wustl.edu 37 7 92764617 92764617 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152703.2 -1 validated p.R223Q 1.000 276 1.8% 58 29.3% 7 14.2% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) NULL CCDC132 55610 genome.wustl.edu 37 7 92938163 92938163 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017667.2 +1 validated p.A553T 1.000 392 0% 125 20% 19 47.3% benign(0.073) tolerated(0.12) neutral(0.266) NULL CALCR 799 genome.wustl.edu 37 7 93106878 93106878 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001742.3 -1 reviewed p.D103G 1.000 226 0% 46 17.4% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_HRM,HMMSmart_HormR,superfamily_SSF111418,superfamily_SSF81321 COL1A2 1278 genome.wustl.edu 37 7 94037655 94037655 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000089.3 +1 reviewed p.R234H 1.000 602 0.2% 574 21.1% 98 3% unknown(0) deleterious(0.01) - HMMPfam_Collagen CASD1 64921 genome.wustl.edu 37 7 94147631 94147631 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022900.4 +1 validated p.N116T 1.000 133 0% 126 19.8% 2 50% benign(0.139) tolerated(0.34) neutral(0.035) superfamily_Cyclin_like CASD1 64921 genome.wustl.edu 37 7 94167087 94167087 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022900.4 +1 validated p.M383V 1.000 360 0% 115 13% 1 0% benign(0.001) deleterious(0.01) neutral(0.406) HMMPfam_Cas1p SGCE 8910 genome.wustl.edu 37 7 94228089 94228089 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428696 -1 known p.S396N 1.000 429 0% 90 25.6% 34 47% - - - HMMPfam_Sarcoglycan_2 PPP1R9A 55607 genome.wustl.edu 37 7 94540230 94540230 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017650.2 +1 validated p.E269* 0.983 161 0% 184 16.8% 0 - - - - NULL PPP1R9A 55607 genome.wustl.edu 37 7 94897956 94897956 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017650.2 +1 validated p.P898 0.944 189 0% 68 20.6% 0 - - - - NULL PON1 5444 genome.wustl.edu 37 7 94953745 94953745 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000446.5 -1 reviewed p.A15T 0.008 146 0% 121 26.4% 0 - benign(0.273) deleterious(0.01) neutral(0.435) NULL PON3 5446 genome.wustl.edu 37 7 94996745 94996745 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000940.2 -1 reviewed p.E141 1.000 299 0% 96 18.8% 0 - - - - superfamily_Calcium-dependent phosphotriesterase PON2 5445 genome.wustl.edu 37 7 95045610 95045610 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000305.2 -1 reviewed e3-1 1.000 439 0% 198 22.7% 0 - - - - - ASB4 51666 genome.wustl.edu 37 7 95125325 95125325 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016116.1 +1 reviewed p.T148I 1.000 254 0% 121 24% 0 - benign(0.043) tolerated(0.11) neutral(0.274) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat DYNC1I1 1780 genome.wustl.edu 37 7 95606854 95606854 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004411.4 +1 validated p.S191Y 0.821 463 0% 79 25.3% 0 - benign(0.003) tolerated(0.17) neutral(0.059) superfamily_WD40 repeat-like ACN9 57001 genome.wustl.edu 37 7 96747038 96747038 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020186.2 +1 validated p.M1I 0.999 45 0% 51 21.6% 15 20% possibly_damaging(0.797) deleterious(0) deleterious(0.744) NULL ASNS 440 genome.wustl.edu 37 7 97493754 97493754 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001673.4 -1 reviewed p.L102I 1.000 165 0% 145 22.1% 24 41.6% benign(0.013) tolerated(0.27) neutral(0.034) HMMPfam_GATase_2,superfamily_SSF56235 TECPR1 25851 genome.wustl.edu 37 7 97851776 97851776 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015395.1 -1 provisional p.A996S 0.887 34 0% 30 30% 4 0% benign(0.016) tolerated(0.57) neutral(0.007) HMMSmart_SM00706 TECPR1 25851 genome.wustl.edu 37 7 97852982 97852982 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015395.1 -1 provisional p.C913* 0.999 282 0% 214 25.2% 4 0% - - - HMMSmart_SM00694 TECPR1 25851 genome.wustl.edu 37 7 97862231 97862231 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015395.1 -1 provisional p.A576T 0.994 55 0% 65 29.2% 8 12.5% benign(0.198) tolerated(0.07) neutral(0.338) NULL BRI3 25798 genome.wustl.edu 37 7 97911726 97911726 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015379.4 +1 validated p.A69V 1.000 167 0% 251 22.7% 408 32.8% benign(0) tolerated(0.51) neutral(0.009) HMMPfam_DUF2367 TMEM130 222865 genome.wustl.edu 37 7 98460980 98460980 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134450.1 -1 validated p.T43 0.924 192 0% 122 23% 0 - - - - NULL TRRAP 8295 genome.wustl.edu 37 7 98515048 98515048 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003496.2 +1 validated p.L790M 0.991 140 0% 89 20.2% 4 75% probably_damaging(1) deleterious(0.05) deleterious(0.845) superfamily_ARM repeat TRRAP 8295 genome.wustl.edu 37 7 98533290 98533290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003496.2 +1 validated p.A1368V 1.000 283 0% 216 26.4% 5 60% possibly_damaging(0.836) tolerated(0.11) deleterious(0.591) superfamily_ARM repeat TRRAP 8295 genome.wustl.edu 37 7 98574615 98574615 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003496.2 +1 validated p.M2742I 1.000 366 0% 351 20.5% 14 35.7% possibly_damaging(0.496) deleterious(0.05) deleterious(0.511) superfamily_ARM repeat TRRAP 8295 genome.wustl.edu 37 7 98581728 98581728 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003496.2 +1 validated p.A2987V 0.999 292 0% 264 12.1% 19 15.7% benign(0.15) tolerated(0.9) neutral(0.013) HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like TRRAP 8295 genome.wustl.edu 37 7 98586433 98586433 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456197 +1 known p.T2860M 0.840 216 0% 178 23.6% 17 35.2% - - - HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like TRRAP 8295 genome.wustl.edu 37 7 98601997 98601997 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003496.2 +1 validated p.F3455L 1.000 147 0% 185 24.9% 36 36.1% benign(0.08) tolerated(1) neutral(0.005) superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat TRRAP 8295 genome.wustl.edu 37 7 98609024 98609024 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003496.2 +1 validated p.L3692 1.000 163 0% 150 26% 64 45.3% - - - HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat KPNA7 402569 genome.wustl.edu 37 7 98786147 98786147 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145715.1 -1 validated p.L226M 1.000 41 0% 30 13.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold ARPC1B 10095 genome.wustl.edu 37 7 98984412 98984412 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005720.2 +1 reviewed p.G57C 1.000 161 0.6% 133 24.1% 275 13% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 PDAP1 11333 genome.wustl.edu 37 7 98995519 98995519 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014891.5 -1 validated p.E151D 0.992 327 0% 325 21.2% 363 44% possibly_damaging(0.45) deleterious(0.02) deleterious(0.530) HMMPfam_PP28 PDAP1 11333 genome.wustl.edu 37 7 98995532 98995532 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014891.5 -1 validated p.R147Q 1.000 382 0.3% 355 20% 374 43% possibly_damaging(0.881) deleterious(0.01) deleterious(0.749) HMMPfam_PP28 PTCD1 26024 genome.wustl.edu 37 7 99032744 99032744 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015545.2 -1 validated p.P41Q 0.000 57 0% 59 30.5% 11 27.2% probably_damaging(0.968) deleterious(0) deleterious(0.855) NULL ZNF394 84124 genome.wustl.edu 37 7 99092065 99092065 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032164.2 -1 provisional p.S258F 0.984 244 0% 162 21% 18 33.3% probably_damaging(0.959) deleterious(0.04) deleterious(0.752) NULL FAM200A 221786 genome.wustl.edu 37 7 99144854 99144854 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145111.2 -1 validated p.R393C 0.356 84 0% 96 19.8% 20 60% benign(0.008) tolerated(0.09) neutral(0.296) NULL ZKSCAN1 7586 genome.wustl.edu 37 7 99627966 99627966 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003439.1 +1 validated p.R256M 1.000 496 0% 188 25% 1 100% probably_damaging(0.96) tolerated(0.35) neutral(0.424) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZKSCAN1 7586 genome.wustl.edu 37 7 99631760 99631760 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003439.1 +1 validated p.A544 0.358 154 0% 98 18.4% 3 66.6% - - - superfamily_C2H2 and C2HC zinc fingers TAF6 6878 genome.wustl.edu 37 7 99709746 99709746 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005641.2 -1 reviewed p.C235 0.997 41 0% 64 25% 36 19.4% - - - NULL TAF6 6878 genome.wustl.edu 37 7 99709801 99709801 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005641.2 -1 reviewed p.S217Y 1.000 55 0% 71 18.3% 18 38.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TAF6 6878 genome.wustl.edu 37 7 99711494 99711494 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005641.2 -1 reviewed p.V80 0.205 180 0% 166 24.7% 50 68% - - - superfamily_Histone-fold TAF6 6878 genome.wustl.edu 37 7 99711722 99711722 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005641.2 -1 reviewed p.Q37H 0.999 211 0.5% 172 13.4% 41 24.3% benign(0.198) tolerated(0.07) neutral(0.338) HMMPfam_TAF,HMMSmart_SM00803,superfamily_Histone-fold C7orf43 55262 genome.wustl.edu 37 7 99755322 99755322 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018275.3 -1 predicted p.R191* 1.000 127 0% 137 24.1% 7 28.5% - - - NULL LOC100287198 100287198 genome.wustl.edu 37 7 99771649 99771649 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342774.1 +1 model p.S437F 0.002 29 0% 39 15.4% 0 - - - - NULL STAG3 10734 genome.wustl.edu 37 7 99811630 99811630 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012447.2 +1 validated p.D1224Y 1.000 316 0% 240 19.2% 1 0% possibly_damaging(0.465) deleterious(0) deleterious(0.598) NULL GATS 352954 genome.wustl.edu 37 7 99820262 99820262 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436886 -1 known p.A194V 0.950 496 0% 410 26.1% 2 0% - - - NULL PILRB 29990 genome.wustl.edu 37 7 99956960 99956960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013440.3 +1 reviewed p.A152D 0.046 319 0% 247 21.9% 55 29% possibly_damaging(0.816) tolerated(0.15) deleterious(0.549) NULL MEPCE 56257 genome.wustl.edu 37 7 100028423 100028423 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019606.4 +1 provisional p.K261T 1.000 86 0% 88 27.3% 32 46.8% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL NYAP1 222950 genome.wustl.edu 37 7 100087095 100087095 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173564.2 +1 predicted p.P584H 1.000 33 0% 34 20.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ENSG00000205307 0 genome.wustl.edu 37 7 100170023 100170023 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000342773 -1 known p.A163T 0.000 106 0% 112 19.6% 10 20% benign(0.001) tolerated(0.14) neutral(0.249) NULL PCOLCE 5118 genome.wustl.edu 37 7 100205408 100205408 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002593.3 +1 reviewed p.K387 1.000 389 0% 377 25.7% 147 6.8% - - - superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643 MOSPD3 64598 genome.wustl.edu 37 7 100210577 100210577 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040097.1 +1 reviewed p.L55 1.000 34 0% 22 18.2% 39 41% - - - HMMPfam_Motile_Sperm,superfamily_PapD-like ACTL6B 51412 genome.wustl.edu 37 7 100244644 100244644 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016188.4 -1 reviewed p.A296T 0.997 98 0% 98 32.7% 0 - benign(0.197) tolerated(0.07) neutral(0.338) HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 ZAN 7455 genome.wustl.edu 37 7 100364744 100364744 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003386.1 +1 reviewed p.R1575M 0.000 112 0% 58 17.2% 0 - probably_damaging(0.981) deleterious(0.04) deleterious(0.774) HMMPfam_VWD,HMMSmart_SM00216 EPHB4 2050 genome.wustl.edu 37 7 100416163 100416163 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004444.4 -1 reviewed p.Y467 0.939 113 0% 96 20.8% 23 39.1% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SLC12A9 56996 genome.wustl.edu 37 7 100451887 100451887 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020246.2 +1 validated p.A23V 0.001 204 0% 206 26.2% 7 28.5% benign(0.02) tolerated(0.3) neutral(0.030) NULL TRIP6 7205 genome.wustl.edu 37 7 100465797 100465797 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003302.2 +1 reviewed p.S102I 1.000 24 0% 33 21.2% 72 43% benign(0.388) - - NULL SRRT 51593 genome.wustl.edu 37 7 100482019 100482019 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015908.5 +1 validated p.N263T 1.000 183 0% 135 23% 41 56% benign(0.224) tolerated(0.4) neutral(0.038) NULL ACHE 43 genome.wustl.edu 37 7 100490017 100490017 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015831.2 -1 reviewed p.T497 0.004 86 0% 119 21.8% 1 0% - - - HMMPfam_COesterase,superfamily_SSF53474 MUC12 10071 genome.wustl.edu 37 7 100612946 100612946 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379442 +1 known p.A15T 0.002 102 0% 120 22.5% 0 - benign(0.071) - - NULL MUC12 10071 genome.wustl.edu 37 7 100634127 100634127 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379442 +1 known p.L238F 0.000 600 0% 249 21.7% 0 - possibly_damaging(0.741) - - NULL MUC12 10071 genome.wustl.edu 37 7 100644548 100644548 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379442 +1 known p.A3711 0.000 2227 0.1% 1219 10.2% 0 - - - - NULL MUC12 10071 genome.wustl.edu 37 7 100648001 100648001 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379442 +1 known p.G4862 0.000 524 0% 309 21% 0 - - - - NULL MUC17 140453 genome.wustl.edu 37 7 100676300 100676300 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040105.1 +1 provisional p.P535T 0.000 718 0% 287 25.8% 0 - unknown(0) - - NULL MUC17 140453 genome.wustl.edu 37 7 100678994 100678994 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040105.1 +1 provisional p.A1433T 0.000 524 0% 211 14.2% 0 - unknown(0) - - NULL MUC17 140453 genome.wustl.edu 37 7 100685988 100685988 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040105.1 +1 provisional p.P3764L 0.007 462 0% 116 12.9% 0 - benign(0.296) - - NULL MUC17 140453 genome.wustl.edu 37 7 100695187 100695187 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040105.1 +1 provisional p.V4349 0.003 227 0% 79 11.4% 3 33.3% - - - NULL TRIM56 81844 genome.wustl.edu 37 7 100731291 100731291 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030961.1 +1 provisional p.A233V 0.001 28 0% 36 13.9% 0 - benign(0.015) tolerated(0.28) neutral(0.032) NULL TRIM56 81844 genome.wustl.edu 37 7 100732298 100732298 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030961.1 +1 provisional p.R569W 0.071 19 0% 17 23.5% 8 50% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) superfamily_NHL repeat TRIM56 81844 genome.wustl.edu 37 7 100732583 100732583 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030961.1 +1 provisional p.L664 1.000 290 0% 255 25.9% 6 50% - - - superfamily_NHL repeat VGF 7425 genome.wustl.edu 37 7 100807324 100807324 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003378.3 -1 reviewed p.K267N 1.000 29 0% 11 36.4% 0 - possibly_damaging(0.605) deleterious(0) deleterious(0.654) NULL MOGAT3 346606 genome.wustl.edu 37 7 100839508 100839508 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178176.2 -1 provisional p.S277 0.996 65 0% 50 16% 0 - - - - HMMPfam_DAGAT MOGAT3 346606 genome.wustl.edu 37 7 100842036 100842036 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178176.2 -1 provisional p.G122C 0.060 126 0.8% 118 27.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DAGAT CUX1 1523 genome.wustl.edu 37 7 101840219 101840219 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436903 +1 known e15-1 1.000 342 0% 305 23.3% 4 50% - - - - CUX1 1523 genome.wustl.edu 37 7 101918542 101918542 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001913.2 +1 reviewed p.A492V 0.530 96 0% 96 26% 56 30.3% benign(0.002) tolerated(0.27) neutral(0.034) HMMPfam_CASP_C CUX1 1523 genome.wustl.edu 37 7 101921226 101921226 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001913.2 +1 reviewed p.R524C 1.000 25 0% 36 16.7% 59 32.2% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_CASP_C CUX1 1523 genome.wustl.edu 37 7 101923410 101923410 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001913.2 +1 reviewed p.R588 1.000 34 0% 44 29.5% 52 53.8% - - - HMMPfam_CASP_C CUX1 1523 genome.wustl.edu 37 7 101925138 101925138 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001913.2 +1 reviewed p.L610M 1.000 107 0% 128 21.1% 68 32.3% benign(0.022) tolerated(0.08) neutral(0.301) HMMPfam_CASP_C MIR548O 100313829 genome.wustl.edu 37 7 102046222 102046222 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000408583 -1 known NULL 0.140 225 0% 158 27.8% 0 - - - - - ORAI2 80228 genome.wustl.edu 37 7 102087367 102087367 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126340.1 +1 validated p.F211 0.990 43 0% 29 31% 16 43.7% - - - HMMPfam_DUF1650 FBXL13 222235 genome.wustl.edu 37 7 102566754 102566754 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145032.3 -1 validated p.T282N 0.020 193 0% 124 21.8% 2 50% benign(0.026) tolerated(0.72) neutral(0.003) superfamily_RNI-like NAPEPLD 222236 genome.wustl.edu 37 7 102768952 102768952 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122838.1 -1 validated p.S91I 1.000 334 0% 123 14.6% 5 40% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) NULL DNAJC2 27000 genome.wustl.edu 37 7 102960070 102960070 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014377.1 -1 reviewed p.A410T 1.000 417 0% 280 26.1% 46 36.9% possibly_damaging(0.715) deleterious(0.04) deleterious(0.608) NULL SLC26A5 375611 genome.wustl.edu 37 7 103061246 103061246 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198999.2 -1 reviewed p.K77N 1.000 281 0% 96 22.9% 0 - possibly_damaging(0.927) deleterious(0) deleterious(0.820) NULL RELN 5649 genome.wustl.edu 37 7 103179554 103179554 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005045.3 -1 reviewed p.A2384D 1.000 109 0% 66 18.2% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL MLL5 55904 genome.wustl.edu 37 7 104747618 104747618 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000334884 +1 known p.F852I 1.000 122 0% 101 26.7% 8 37.5% unknown(0) deleterious(0) - NULL SRPK2 6733 genome.wustl.edu 37 7 104783648 104783648 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182692.1 -1 validated p.E315* 1.000 282 0% 199 22.6% 7 28.5% - - - superfamily_Kinase_like,HMMPfam_Pkinase PUS7 54517 genome.wustl.edu 37 7 105103124 105103124 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019042.3 -1 validated p.D567E 1.000 412 0% 317 24.6% 5 40% benign(0.106) tolerated(0.51) neutral(0.017) HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom PUS7 54517 genome.wustl.edu 37 7 105105797 105105797 + Silent SNP G G T rs186485849 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019042.3 -1 validated p.P530 0.101 423 0.2% 233 21.9% 5 20% - - - HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom RINT1 60561 genome.wustl.edu 37 7 105183030 105183030 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021930.4 +1 validated p.S150I 0.055 272 0.7% 104 21.2% 7 28.5% benign(0.286) tolerated(0.09) neutral(0.384) NULL RINT1 60561 genome.wustl.edu 37 7 105190606 105190606 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021930.4 +1 validated p.N367 1.000 582 0% 270 25.6% 12 50% - - - HMMPfam_RINT1_TIP1 PIK3CG 5294 genome.wustl.edu 37 7 106509283 106509283 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002649.2 +1 reviewed p.G426E 1.000 70 0% 125 14.4% 2 0% possibly_damaging(0.938) deleterious(0.01) deleterious(0.789) HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) PIK3CG 5294 genome.wustl.edu 37 7 106523506 106523506 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002649.2 +1 reviewed p.T886 0.033 146 0% 122 15.6% 1 0% - - - HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like) PRKAR2B 5577 genome.wustl.edu 37 7 106781369 106781369 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002736.2 +1 reviewed p.D186 0.995 553 0.2% 165 19.4% 3 0% - - - HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_1,superfamily_cNMP_binding HBP1 26959 genome.wustl.edu 37 7 106826323 106826323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012257.3 +1 validated p.S159L 0.996 265 0% 113 17.7% 31 45.1% benign(0.005) tolerated(0.22) neutral(0.042) NULL DUS4L 11062 genome.wustl.edu 37 7 107214231 107214231 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181581.1 +1 validated p.A107 0.798 543 0.2% 511 19.6% 5 20% - - - HMMPfam_Dus,superfamily_FMN-linked oxidoreductases DUS4L 11062 genome.wustl.edu 37 7 107217950 107217950 + Missense_Mutation SNP C C A rs184033937 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181581.1 +1 validated p.A300D 1.000 411 0% 562 19.8% 14 50% benign(0.119) tolerated(0.42) neutral(0.024) HMMPfam_Dus,superfamily_FMN-linked oxidoreductases SLC26A4 5172 genome.wustl.edu 37 7 107329629 107329629 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000441.1 +1 reviewed p.T378I 0.536 338 0% 99 12.1% 0 - benign(0) tolerated(0.21) neutral(0.044) HMMPfam_Sulfate_transp SLC26A4 5172 genome.wustl.edu 37 7 107353062 107353062 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000441.1 +1 reviewed p.D772Y 1.000 477 0% 180 23.3% 0 - possibly_damaging(0.908) deleterious(0) deleterious(0.806) NULL CBLL1 79872 genome.wustl.edu 37 7 107389424 107389424 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024814.2 +1 validated p.A38V 0.974 296 0.3% 267 22.5% 5 40% benign(0) tolerated(0.33) neutral(0.024) NULL CBLL1 79872 genome.wustl.edu 37 7 107389448 107389448 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024814.2 +1 validated p.R46I 1.000 273 0% 254 20.5% 6 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CBLL1 79872 genome.wustl.edu 37 7 107398623 107398623 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024814.2 +1 validated p.T159I 0.999 332 0% 159 18.9% 7 42.8% benign(0.004) tolerated(0.19) neutral(0.050) NULL CBLL1 79872 genome.wustl.edu 37 7 107399203 107399203 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024814.2 +1 validated p.S352R 1.000 319 0% 192 20.8% 15 66.6% probably_damaging(0.959) deleterious(0.01) deleterious(0.808) NULL SLC26A3 1811 genome.wustl.edu 37 7 107434219 107434219 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000111.2 -1 reviewed p.G80D 1.000 145 0% 56 33.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL LAMB1 3912 genome.wustl.edu 37 7 107580775 107580775 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002291.2 -1 reviewed p.E1140 0.997 90 0% 46 19.6% 23 8.6% - - - HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin LAMB1 3912 genome.wustl.edu 37 7 107626773 107626773 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002291.2 -1 reviewed p.S153 0.005 199 0% 99 22.2% 9 11.1% - - - HMMPfam_Laminin_N,HMMSmart_SM00136 LAMB1 3912 genome.wustl.edu 37 7 107635406 107635406 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002291.2 -1 reviewed e4-1 1.000 280 0% 221 25.8% 0 - - - - - LAMB4 22798 genome.wustl.edu 37 7 107677890 107677890 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007356.2 -1 validated p.R1541M 0.001 571 0% 165 27.9% 0 - probably_damaging(0.954) deleterious(0.03) deleterious(0.762) NULL LAMB4 22798 genome.wustl.edu 37 7 107684261 107684261 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007356.2 -1 validated p.N1469 0.999 826 0% 273 24.5% 0 - - - - NULL LAMB4 22798 genome.wustl.edu 37 7 107718664 107718664 + Missense_Mutation SNP G G A rs192696808 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007356.2 -1 validated p.A662V 0.003 155 0% 52 11.5% 0 - benign(0.245) tolerated(0.22) neutral(0.067) NULL LAMB4 22798 genome.wustl.edu 37 7 107732171 107732171 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007356.2 -1 validated p.R534H 0.488 190 0% 84 13.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_1,superfamily_EGF/Laminin LAMB4 22798 genome.wustl.edu 37 7 107732809 107732809 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007356.2 -1 validated p.C508Y 1.000 322 0% 140 15% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin LAMB4 22798 genome.wustl.edu 37 7 107746348 107746348 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007356.2 -1 validated p.R262W 0.468 250 0% 104 16.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_N,HMMSmart_SM00136 PNPLA8 50640 genome.wustl.edu 37 7 108119718 108119718 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015723.2 -1 provisional p.R662C 1.000 361 0.3% 159 17.6% 25 48% probably_damaging(1) tolerated(0.05) deleterious(0.845) superfamily_FabD/lysophospholipase-like PNPLA8 50640 genome.wustl.edu 37 7 108128202 108128202 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015723.2 -1 provisional e7+1 1.000 90 0% 56 23.2% 0 - - - - - LRRN3 54674 genome.wustl.edu 37 7 110762961 110762961 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099658.1 +1 validated p.S45P 1.000 337 0% 105 13.3% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00013,superfamily_L domain-like DOCK4 9732 genome.wustl.edu 37 7 111423943 111423943 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014705.3 -1 reviewed p.T1156I 1.000 352 0% 102 14.7% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TMEM168 64418 genome.wustl.edu 37 7 112424334 112424334 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022484.4 -1 validated p.L183I 1.000 136 0% 121 24% 8 62.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL C7orf60 154743 genome.wustl.edu 37 7 112462088 112462088 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152556.2 -1 validated p.F310C 1.000 284 0% 82 25.6% 1 0% possibly_damaging(0.44) tolerated(0.07) neutral(0.463) NULL PPP1R3A 5506 genome.wustl.edu 37 7 113519585 113519585 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002711.3 -1 reviewed p.R521I 0.001 305 0% 92 18.5% 0 - benign(0.404) deleterious(0) deleterious(0.575) NULL PPP1R3A 5506 genome.wustl.edu 37 7 113522175 113522175 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002711.3 -1 reviewed p.E295D 0.971 489 0% 115 12.2% 0 - benign(0.009) tolerated(0.69) neutral(0.003) NULL FOXP2 93986 genome.wustl.edu 37 7 114268649 114268649 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148898.2 +1 reviewed p.Q130K 1.000 337 0% 131 21.4% 1 100% unknown(0) deleterious(0) - NULL MDFIC 29969 genome.wustl.edu 37 7 114582421 114582421 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000393486 +1 known p.W62* 0.997 230 0% 80 18.8% 12 41.6% - - - NULL MET 4233 genome.wustl.edu 37 7 116417489 116417489 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127500.1 +1 reviewed p.G1120 1.000 557 0% 143 14.7% 42 28.5% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP CAPZA2 830 genome.wustl.edu 37 7 116502697 116502697 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006136.2 +1 reviewed p.E11V 1.000 28 0% 18 22.2% 22 13.6% benign(0.132) deleterious(0.03) neutral(0.376) superfamily_Subunits of heterodimeric actin filament capping protein Capz KCND2 3751 genome.wustl.edu 37 7 119915141 119915141 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012281.2 +1 reviewed p.A152V 0.857 65 0% 90 17.8% 0 - benign(0.045) tolerated(0.28) neutral(0.034) NULL KCND2 3751 genome.wustl.edu 37 7 119915492 119915492 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012281.2 +1 reviewed p.A269D 1.000 228 0% 374 21.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ING3 54556 genome.wustl.edu 37 7 120591238 120591238 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019071.2 +1 reviewed p.D17Y 1.000 57 0% 105 20% 7 57.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ING3 54556 genome.wustl.edu 37 7 120610860 120610860 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019071.2 +1 reviewed p.P343S 1.000 279 0% 239 18.4% 3 66.6% benign(0) tolerated(0.84) neutral(0.001) NULL WNT16 51384 genome.wustl.edu 37 7 120969389 120969389 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057168.1 +1 reviewed p.L15M 1.000 46 0% 47 23.4% 0 - possibly_damaging(0.923) tolerated(0.07) deleterious(0.692) NULL FAM3C 10447 genome.wustl.edu 37 7 121004224 121004224 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040020.1 -1 reviewed p.K97N 1.000 421 0% 167 20.4% 21 28.5% probably_damaging(0.998) tolerated(0.11) deleterious(0.746) NULL PTPRZ1 5803 genome.wustl.edu 37 7 121636607 121636607 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002851.2 +1 reviewed p.G367D 1.000 330 0% 280 21.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRZ1 5803 genome.wustl.edu 37 7 121650585 121650585 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002851.2 +1 reviewed p.V495 0.004 182 0% 65 26.2% 0 - - - - NULL PTPRZ1 5803 genome.wustl.edu 37 7 121650977 121650977 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002851.2 +1 reviewed p.S626Y 0.066 124 0% 41 19.5% 0 - benign(0) deleterious(0) neutral(0.445) NULL PTPRZ1 5803 genome.wustl.edu 37 7 121652757 121652757 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002851.2 +1 reviewed p.S1219 0.247 302 0% 125 25.6% 0 - - - - NULL PTPRZ1 5803 genome.wustl.edu 37 7 121653014 121653014 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002851.2 +1 reviewed p.P1305H 0.015 145 0% 66 9.1% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL AASS 10157 genome.wustl.edu 37 7 121741719 121741719 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005763.3 -1 reviewed p.T432A 0.780 157 0% 62 22.6% 0 - benign(0.009) tolerated(0.61) neutral(0.005) NULL CADPS2 93664 genome.wustl.edu 37 7 122255308 122255308 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017954.10 -1 reviewed p.R384* 1.000 306 0.3% 86 23.3% 4 0% - - - HMMPfam_C2 RNF133 168433 genome.wustl.edu 37 7 122338164 122338164 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139175.1 -1 reviewed p.R270H 0.986 315 0% 159 24.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 RNF148 378925 genome.wustl.edu 37 7 122341977 122341977 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198085.1 -1 validated p.C276 1.000 378 0% 139 15.8% 1 100% - - - HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 CADPS2 93664 genome.wustl.edu 37 7 122526062 122526062 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017954.10 -1 reviewed p.R110 1.000 38 0% 62 19.4% 1 0% - - - NULL SLC13A1 6561 genome.wustl.edu 37 7 122787213 122787213 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022444.3 -1 validated p.T271I 0.403 362 0.3% 72 18.1% 0 - benign(0.001) tolerated(0.14) neutral(0.249) HMMPfam_Na_sulph_symp IQUB 154865 genome.wustl.edu 37 7 123142803 123142803 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178827.4 -1 validated p.V291I 0.963 385 0% 169 14.8% 0 - benign(0.264) tolerated(0.14) neutral(0.277) NULL IQUB 154865 genome.wustl.edu 37 7 123152312 123152312 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178827.4 -1 validated p.T28N 0.000 340 0% 178 20.8% 2 50% benign(0) tolerated(0.75) neutral(0.002) NULL ASB15 142685 genome.wustl.edu 37 7 123264751 123264751 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080928.3 +1 validated p.A194T 0.465 211 0% 124 21% 0 - benign(0) tolerated(0.63) neutral(0.004) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ASB15 142685 genome.wustl.edu 37 7 123268931 123268931 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080928.3 +1 validated p.L295I 1.000 257 0% 147 23.8% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat LMOD2 442721 genome.wustl.edu 37 7 123302929 123302929 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207163.1 +1 validated p.P430H 0.994 59 0% 41 34.1% 0 - probably_damaging(0.999) tolerated(0.08) deleterious(0.790) NULL GPR37 2861 genome.wustl.edu 37 7 124404355 124404355 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005302.2 -1 provisional p.G226S 0.000 32 0% 59 28.8% 0 - benign(0.069) tolerated(0.15) neutral(0.245) superfamily_Family A G protein-coupled receptor-like GPR37 2861 genome.wustl.edu 37 7 124404612 124404612 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005302.2 -1 provisional p.T140M 0.000 26 0% 59 15.3% 1 100% possibly_damaging(0.605) tolerated(0.06) deleterious(0.532) NULL GRM8 2918 genome.wustl.edu 37 7 126409960 126409960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000845.2 -1 reviewed p.G439V 1.000 282 0% 53 18.9% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I GCC1 79571 genome.wustl.edu 37 7 127222473 127222473 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024523.5 -1 reviewed p.Q641H 1.000 191 0% 204 19.1% 12 33.3% probably_damaging(0.992) tolerated(0.05) deleterious(0.793) NULL GCC1 79571 genome.wustl.edu 37 7 127222793 127222793 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024523.5 -1 reviewed p.R535W 1.000 100 0% 83 13.3% 12 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ARF5 381 genome.wustl.edu 37 7 127231035 127231035 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001662.2 +1 reviewed p.R117W 1.000 83 0% 100 19% 693 39.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases FSCN3 29999 genome.wustl.edu 37 7 127235681 127235681 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020369.1 +1 provisional p.C155* 1.000 238 0.4% 180 22.2% 0 - - - - superfamily_Actin_crosslink PAX4 5078 genome.wustl.edu 37 7 127253110 127253110 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006193.2 -1 reviewed p.R219 1.000 208 0% 135 16.3% 0 - - - - HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like SND1 27044 genome.wustl.edu 37 7 127342562 127342562 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014390.2 +1 validated p.V221 1.000 283 0% 118 14.4% 78 24.3% - - - HMMSmart_SNc,superfamily_Staphylococal_nuclease_OB-fold LRRC4 64101 genome.wustl.edu 37 7 127669241 127669241 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022143.4 -1 validated p.P485S 1.000 250 0% 244 25.4% 5 80% benign(0.003) deleterious(0.03) neutral(0.364) NULL LEP 3952 genome.wustl.edu 37 7 127892105 127892105 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000230.2 +1 reviewed p.L12I 1.000 539 0% 400 26% 0 - possibly_damaging(0.911) deleterious(0.01) deleterious(0.768) NULL RBM28 55131 genome.wustl.edu 37 7 127965930 127965930 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018077.2 -1 reviewed p.Q382* 1.000 140 0% 46 17.4% 13 0% - - - HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 PRRT4 401399 genome.wustl.edu 37 7 127998735 127998735 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114726.2 -1 validated p.D293Y 0.978 113 0% 130 20% 0 - probably_damaging(0.978) deleterious(0.01) deleterious(0.826) NULL PRRT4 401399 genome.wustl.edu 37 7 127998845 127998845 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000480290 -1 known p.W137* 1.000 138 0% 153 28.1% 0 - probably_damaging(0.999) tolerated(0.19) deleterious(0.540) NULL PRRT4 401399 genome.wustl.edu 37 7 127999683 127999683 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000480290 -1 known p.A3T 0.000 34 0% 54 25.9% 0 - - - - NULL IMPDH1 3614 genome.wustl.edu 37 7 128036694 128036694 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000883.3 -1 reviewed p.R407 0.927 34 0% 35 25.7% 24 16.6% - - - HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED,superfamily_SSF51412 METTL2B 55798 genome.wustl.edu 37 7 128119511 128119511 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018396.2 +1 reviewed p.L168M 0.173 783 0% 583 14.4% 12 25% possibly_damaging(0.918) tolerated(0.22) neutral(0.410) superfamily_S-adenosyl-L-methionine-dependent methyltransferases FAM71F2 346653 genome.wustl.edu 37 7 128320096 128320096 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000477515 +1 known p.A126V 0.703 117 0% 73 26% 0 - unknown(0) - - NULL FAM71F1 84691 genome.wustl.edu 37 7 128356889 128356889 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032599.2 +1 validated p.R91I 0.047 301 0% 86 11.6% 0 - benign(0) tolerated(0.19) neutral(0.050) NULL CCDC136 64753 genome.wustl.edu 37 7 128454781 128454781 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022742.3 +1 validated p.E951D 1.000 78 0% 42 23.8% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) superfamily_Spectrin repeat CCDC136 64753 genome.wustl.edu 37 7 128457826 128457826 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022742.3 +1 validated p.P1126 0.976 896 0% 591 20% 0 - - - - NULL FLNC 2318 genome.wustl.edu 37 7 128481417 128481417 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001458.4 +1 reviewed p.K669N 1.000 191 0.5% 167 24.6% 1 0% benign(0.005) tolerated(0.12) neutral(0.261) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin FLNC 2318 genome.wustl.edu 37 7 128485220 128485220 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001458.4 +1 reviewed p.P1234L 0.995 51 0% 36 19.4% 5 0% benign(0) tolerated(0.74) neutral(0.002) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin FLNC 2318 genome.wustl.edu 37 7 128489530 128489530 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001458.4 +1 reviewed p.D1699 0.510 136 0% 134 23.9% 5 0% - - - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin ENSG00000221401 0 genome.wustl.edu 37 7 128546942 128546942 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000408474 +1 novel NULL 0.001 28 0% 27 22.2% 0 - - - - - IRF5 3663 genome.wustl.edu 37 7 128587936 128587936 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098629.1 +1 reviewed p.R314H 1.000 55 0% 62 17.7% 17 35.2% possibly_damaging(0.643) tolerated(0.41) neutral(0.240) superfamily_SMAD_FHA,HMMPfam_IRF-3 SMO 6608 genome.wustl.edu 37 7 128845145 128845145 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005631.3 +1 provisional p.C213 0.970 59 1.7% 76 25% 32 34.3% - - - NULL SMO 6608 genome.wustl.edu 37 7 128852035 128852035 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005631.3 +1 provisional p.R703* 1.000 31 0% 35 25.7% 38 44.7% - - - NULL SMO 6608 genome.wustl.edu 37 7 128852096 128852096 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005631.3 +1 provisional p.D723V 0.629 37 0% 37 10.8% 42 2.3% possibly_damaging(0.844) deleterious(0.01) deleterious(0.729) NULL SMO 6608 genome.wustl.edu 37 7 128852188 128852188 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005631.3 +1 provisional p.A754T 0.027 45 0% 26 26.9% 57 49.1% benign(0.002) tolerated(0.18) neutral(0.056) NULL AHCYL2 23382 genome.wustl.edu 37 7 129064755 129064755 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015328.2 +1 validated p.F534C 1.000 295 0% 223 16.1% 5 40% probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMPfam_AdoHcyase,superfamily_NAD(P)-bd,superfamily_SSF52283 FAM40B 57464 genome.wustl.edu 37 7 129122798 129122798 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020704.2 +1 validated p.R722H 1.000 241 0% 157 10.8% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C7orf45 136263 genome.wustl.edu 37 7 129847895 129847895 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145268.3 +1 validated p.V49I 0.006 511 0.2% 485 21.4% 0 - benign(0.001) tolerated(1) - NULL CPA1 1357 genome.wustl.edu 37 7 130021011 130021011 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001868.2 +1 reviewed p.E46 1.000 74 0% 70 27.1% 0 - - - - HMMPfam_Propep_M14,superfamily_Prot_inh_propept CPA1 1357 genome.wustl.edu 37 7 130022013 130022013 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001868.2 +1 reviewed p.G149D 1.000 71 0% 95 20% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187 CEP41 95681 genome.wustl.edu 37 7 130044439 130044439 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018718.1 -1 provisional p.G130R 0.967 216 0% 131 29.8% 17 52.9% benign(0.22) tolerated(0.19) neutral(0.071) superfamily_Rhodanese/Cell cycle control phosphatase CEP41 95681 genome.wustl.edu 37 7 130044528 130044528 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018718.1 -1 provisional p.D100G 0.766 240 0% 125 11.2% 4 25% benign(0.273) deleterious(0.05) neutral(0.374) superfamily_Rhodanese/Cell cycle control phosphatase MIR335 442904 genome.wustl.edu 37 7 130135979 130135979 + RNA SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000362173 +1 known NULL 1.000 261 0% 350 22.3% 0 - - - - - MKLN1 4289 genome.wustl.edu 37 7 131082086 131082086 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013255.4 +1 validated p.G154D 1.000 465 0% 150 18.7% 9 55.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Galactose-binding domain-like,HMMPfam_Muskelin_N PLXNA4 91584 genome.wustl.edu 37 7 131910962 131910962 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020911.1 -1 validated p.A647V 1.000 182 0% 76 9.2% 0 - benign(0.006) tolerated(1) - NULL ENSG00000232856 0 genome.wustl.edu 37 7 132719609 132719609 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000448615 -1 known p.A127T 1.000 154 0% 73 21.9% 2199 0.1% benign(0.014) deleterious(0) neutral(0.445) HMMPfam_EF1G,superfamily_eEF1-gamma domain LRGUK 136332 genome.wustl.edu 37 7 133812294 133812294 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144648.1 +1 provisional p.S58 1.000 120 0% 71 28.2% 0 - - - - NULL AKR1B10 57016 genome.wustl.edu 37 7 134216723 134216723 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020299.4 +1 reviewed p.L100M 1.000 511 0% 152 15.1% 3 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase AGBL3 340351 genome.wustl.edu 37 7 134719028 134719028 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178563.3 +1 provisional p.T229I 0.996 196 0% 95 20% 0 - benign(0.202) tolerated(0.16) neutral(0.079) NULL AGBL3 340351 genome.wustl.edu 37 7 134743925 134743925 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178563.3 +1 provisional p.R616Q 0.937 334 0% 169 29% 1 100% benign(0.019) tolerated(0.17) neutral(0.060) NULL CNOT4 4850 genome.wustl.edu 37 7 135122919 135122919 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013316.2 -1 validated p.P54H 1.000 274 0% 121 15.7% 7 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RING,superfamily_SSF57850 NUP205 23165 genome.wustl.edu 37 7 135300665 135300665 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015135.2 +1 validated p.E1104 0.950 167 0% 77 15.6% 19 21% - - - NULL NUP205 23165 genome.wustl.edu 37 7 135312781 135312781 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015135.2 +1 validated p.Q1618H 1.000 366 0% 200 21.5% 28 46.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC13A4 26266 genome.wustl.edu 37 7 135384209 135384209 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012450.2 -1 validated p.C267G 1.000 545 0.4% 304 25.7% 2 0% benign(0.002) tolerated(0.61) neutral(0.004) HMMPfam_Na_sulph_symp MTPN 136319 genome.wustl.edu 37 7 135635429 135635429 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145808.3 -1 reviewed p.A63D 1.000 234 0% 107 21.5% 22 59% probably_damaging(0.993) tolerated(0.64) neutral(0.453) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat CHRM2 1129 genome.wustl.edu 37 7 136700033 136700033 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000739.2 +1 reviewed p.G141C 1.000 124 0.8% 31 19.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CHRM2 1129 genome.wustl.edu 37 7 136700446 136700446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000739.2 +1 reviewed p.E278D 0.998 181 0% 46 19.6% 0 - benign(0.268) tolerated(0.44) neutral(0.041) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like DGKI 9162 genome.wustl.edu 37 7 137080353 137080353 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004717.2 -1 reviewed p.T1024 0.999 87 0% 35 14.3% 0 - - - - HMMPfam_Ank,superfamily_ANK DGKI 9162 genome.wustl.edu 37 7 137237288 137237288 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004717.2 -1 reviewed p.G658 0.325 86 0% 79 17.7% 0 - - - - HMMPfam_DAGK_acc,HMMSmart_DAGKa DGKI 9162 genome.wustl.edu 37 7 137308258 137308258 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004717.2 -1 reviewed p.A283S 1.000 490 0% 184 23.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_C1_1,HMMSmart_C1 DGKI 9162 genome.wustl.edu 37 7 137330284 137330284 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004717.2 -1 reviewed e6-1 1.000 162 0% 108 25% 0 - - - - - DGKI 9162 genome.wustl.edu 37 7 137363354 137363354 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004717.2 -1 reviewed p.V185 1.000 86 0% 37 10.8% 0 - - - - HMMSmart_C1 CREB3L2 64764 genome.wustl.edu 37 7 137590448 137590448 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194071.2 -1 validated p.K305N 1.000 398 0% 232 19.4% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1 CREB3L2 64764 genome.wustl.edu 37 7 137613005 137613005 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000420629 -1 known p.R4Q 0.002 129 0% 50 14% 6 0% unknown(0) - - NULL AKR1D1 6718 genome.wustl.edu 37 7 137773403 137773403 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005989.2 +1 validated p.R50 0.121 321 0% 78 20.5% 0 - - - - HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_1 AKR1D1 6718 genome.wustl.edu 37 7 137773485 137773485 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005989.2 +1 validated p.R78W 0.040 332 0% 67 25.4% 0 - possibly_damaging(0.889) deleterious(0) deleterious(0.794) HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red AKR1D1 6718 genome.wustl.edu 37 7 137792315 137792315 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005989.2 +1 validated p.E282* 1.000 208 0% 137 18.2% 0 - - - - HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_3 SVOPL 136306 genome.wustl.edu 37 7 138333812 138333812 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001139456.1 -1 validated p.R202H 1.000 81 0% 88 33% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MFS_1,superfamily_MFS general substrate transporter ATP6V0A4 50617 genome.wustl.edu 37 7 138417717 138417717 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020632.2 -1 reviewed p.V605I 0.000 416 0% 202 20.8% 1 0% benign(0) tolerated(0.13) neutral(0.253) HMMPfam_V_ATPase_I KIAA1549 57670 genome.wustl.edu 37 7 138554357 138554357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020910.2 -1 validated p.A1518S 1.000 40 0% 55 23.6% 2 50% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL KIAA1549 57670 genome.wustl.edu 37 7 138554495 138554495 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020910.2 -1 validated p.L1472 0.955 25 0% 27 29.6% 2 50% - - - NULL KIAA1549 57670 genome.wustl.edu 37 7 138583724 138583724 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020910.2 -1 validated p.R1225Q 1.000 275 0% 181 24.3% 1 0% probably_damaging(1) tolerated(0.21) deleterious(0.544) NULL TTC26 79989 genome.wustl.edu 37 7 138831936 138831936 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024926.2 +1 validated p.D149Y 1.000 287 0% 195 13.3% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF48452 TTC26 79989 genome.wustl.edu 37 7 138833067 138833067 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024926.2 +1 validated p.A221T 1.000 561 0.4% 309 22.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF48452 UBN2 254048 genome.wustl.edu 37 7 138951132 138951132 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173569.3 +1 validated p.M400I 1.000 223 0% 135 20.7% 0 - benign(0.205) tolerated(0.53) neutral(0.028) NULL LUC7L2 51631 genome.wustl.edu 37 7 139094314 139094314 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016019.2 +1 validated p.V231 0.905 183 0% 248 20.2% 32 3.1% - - - HMMPfam_LUC7 LUC7L2 51631 genome.wustl.edu 37 7 139102312 139102312 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016019.2 +1 validated p.R280* 0.999 149 0% 112 17.9% 68 1.4% - - - NULL TBXAS1 6916 genome.wustl.edu 37 7 139706905 139706905 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001061.4 +1 reviewed p.F384L 0.032 184 0% 198 24.2% 22 9% benign(0) deleterious(0) neutral(0.445) HMMPfam_p450,superfamily_Cytochrome P450 PARP12 64761 genome.wustl.edu 37 7 139757767 139757767 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022750.2 -1 provisional p.V132I 0.394 308 0% 326 23.6% 18 33.3% benign(0.002) tolerated(0.18) neutral(0.056) NULL DENND2A 27147 genome.wustl.edu 37 7 140246612 140246612 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015689.3 -1 validated p.G722D 1.000 140 0% 91 24.2% 8 0% possibly_damaging(0.47) tolerated(0.13) neutral(0.407) HMMPfam_DENN,HMMSmart_SM00799 DENND2A 27147 genome.wustl.edu 37 7 140301869 140301869 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015689.3 -1 validated p.R110M 0.003 479 0% 208 18.3% 2 0% possibly_damaging(0.906) tolerated(0.24) neutral(0.397) NULL ADCK2 90956 genome.wustl.edu 37 7 140374437 140374437 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052853.3 +1 validated p.Q320H 1.000 225 0% 300 10.3% 31 12.9% benign(0.022) deleterious(0.02) neutral(0.384) HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like) AGK 55750 genome.wustl.edu 37 7 141341709 141341709 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018238.3 +1 validated e12+1 0.991 182 0% 93 17.2% 2 100% - - - - AGK 55750 genome.wustl.edu 37 7 141352593 141352593 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018238.3 +1 validated p.G380W 0.022 238 0.4% 91 20.9% 22 31.8% possibly_damaging(0.44) deleterious(0.01) deleterious(0.549) NULL TAS2R5 54429 genome.wustl.edu 37 7 141490923 141490923 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018980.2 +1 reviewed p.V254 0.001 382 0% 333 21.9% 0 - - - - HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like OR9A4 130075 genome.wustl.edu 37 7 141619310 141619310 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001656.1 +1 provisional p.I212T 0.054 316 0% 223 17.5% 0 - benign(0.078) tolerated(0.2) neutral(0.054) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MGAM 8972 genome.wustl.edu 37 7 141727469 141727469 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004668.2 +1 reviewed p.Y385 0.421 177 0% 48 16.7% 0 - - - - HMMPfam_Glyco_hydro_31 MGAM 8972 genome.wustl.edu 37 7 141747586 141747586 + Nonsense_Mutation SNP C C T rs147987126 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004668.2 +1 reviewed p.R834* 1.000 292 0% 75 32% 0 - - - - NULL MGAM 8972 genome.wustl.edu 37 7 141755385 141755385 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004668.2 +1 reviewed p.T1114 1.000 498 0% 198 17.2% 0 - - - - NULL MGAM 8972 genome.wustl.edu 37 7 141756676 141756676 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004668.2 +1 reviewed p.G1209 0.994 288 0% 173 17.3% 0 - - - - NULL MGAM 8972 genome.wustl.edu 37 7 141762486 141762486 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004668.2 +1 reviewed p.F1414C 1.000 418 0% 208 21.2% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Glyco_hydro_31 MGAM 8972 genome.wustl.edu 37 7 141776037 141776037 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000475668 +1 known p.E1771D 0.935 708 0% 266 19.9% 0 - benign(0) tolerated(0.56) neutral(0.006) NULL MGAM 8972 genome.wustl.edu 37 7 141781920 141781920 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000475668 +1 known p.L2028 1.000 244 0% 77 14.3% 0 - - - - NULL MGAM 8972 genome.wustl.edu 37 7 141795375 141795375 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004668.2 +1 reviewed p.P1594H 1.000 336 0% 120 25.8% 0 - unknown(0) deleterious(0) - HMMPfam_Glyco_hydro_31 TRBV7-8 28590 genome.wustl.edu 37 7 142099928 142099928 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390359 -1 known p.R4M 0.001 179 0% 85 21.2% 4 0% possibly_damaging(0.812) deleterious(0.01) deleterious(0.711) NULL TRBV6-6 28601 genome.wustl.edu 37 7 142162344 142162344 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390371 -1 known p.C7Y 0.000 184 0% 55 18.2% 1 0% possibly_damaging(0.903) tolerated(0.91) neutral(0.358) NULL TRBV6-4 28603 genome.wustl.edu 37 7 142250765 142250765 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390360 -1 known p.P94 0.002 171 0% 47 21.3% 0 - - - - HMMPfam_V-set,superfamily_SSF48726 TRPV5 56302 genome.wustl.edu 37 7 142612134 142612134 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019841.4 -1 reviewed p.A457T 0.996 139 0% 64 20.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Ion_trans TRPV5 56302 genome.wustl.edu 37 7 142622670 142622670 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019841.4 -1 reviewed p.R359H 0.997 162 0.6% 78 16.7% 0 - benign(0.03) tolerated(0.36) neutral(0.022) NULL PIP 5304 genome.wustl.edu 37 7 142836614 142836614 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002652.2 +1 validated p.T107N 0.003 250 0% 197 19.8% 0 - benign(0.104) tolerated(0.59) neutral(0.013) HMMPfam_SVA TAS2R40 259286 genome.wustl.edu 37 7 142919744 142919744 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176882.1 +1 provisional p.M191I 0.002 279 0% 115 23.5% 0 - benign(0.009) tolerated(0.17) neutral(0.059) HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like CASP2 835 genome.wustl.edu 37 7 142989540 142989540 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032982.2 +1 reviewed p.L125F 0.091 481 0% 400 18.5% 18 33.3% benign(0.004) deleterious(0.04) neutral(0.349) NULL CASP2 835 genome.wustl.edu 37 7 142991814 142991814 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032982.2 +1 reviewed p.L232R 1.000 239 0% 206 14.1% 21 33.3% probably_damaging(1) tolerated(0.22) deleterious(0.542) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like CASP2 835 genome.wustl.edu 37 7 142997111 142997111 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032982.2 +1 reviewed p.G281 0.624 109 0% 62 11.3% 15 46.6% - - - HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like CASP2 835 genome.wustl.edu 37 7 143002054 143002054 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032982.2 +1 reviewed p.R417W 0.972 181 1.1% 97 10.3% 28 21.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like ZYX 7791 genome.wustl.edu 37 7 143085956 143085956 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010972.1 +1 reviewed p.V471M 0.996 33 0% 50 18% 518 26% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716 ZYX 7791 genome.wustl.edu 37 7 143086011 143086011 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010972.1 +1 reviewed p.R489Q 0.999 23 0% 42 23.8% 459 29.8% benign(0.001) tolerated(0.36) neutral(0.020) HMMPfam_LIM,HMMSmart_LIM,superfamily_SSF57716 TAS2R60 338398 genome.wustl.edu 37 7 143141039 143141039 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177437.1 +1 provisional p.R165I 0.000 352 0% 166 29.5% 0 - benign(0.001) tolerated(0.44) neutral(0.013) HMMPfam_TAS2R,superfamily_SSF81321 TAS2R60 338398 genome.wustl.edu 37 7 143141158 143141158 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177437.1 +1 provisional p.P205S 0.019 265 0% 112 31.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TAS2R,superfamily_SSF81321 TAS2R41 259287 genome.wustl.edu 37 7 143175634 143175634 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176883.2 +1 provisional p.D223 0.138 211 0% 79 15.2% 0 - - - - HMMPfam_TAS2R,superfamily_SSF81321 FAM115A 9747 genome.wustl.edu 37 7 143556094 143556094 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014719.1 -1 predicted p.E776D 1.000 93 0% 69 18.8% 10 30% possibly_damaging(0.914) deleterious(0) deleterious(0.810) NULL OR6B1 135946 genome.wustl.edu 37 7 143701517 143701517 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005281.1 +1 provisional p.R143H 0.055 182 0% 121 19.8% 0 - benign(0) tolerated(0.57) neutral(0.006) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR2A14 135941 genome.wustl.edu 37 7 143826869 143826869 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001659.1 +1 provisional p.A222T 0.000 212 0% 128 18.8% 0 - benign(0) tolerated(0.39) neutral(0.016) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ARHGEF5 7984 genome.wustl.edu 37 7 144075925 144075925 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000474817 +1 known p.P734L 0.013 313 0% 141 13.5% 21 23.8% - - - HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 ARHGEF5 7984 genome.wustl.edu 37 7 144077129 144077129 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005435.3 +1 reviewed p.L1592M 1.000 134 0% 66 15.2% 27 25.9% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL NOBOX 135935 genome.wustl.edu 37 7 144097306 144097306 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080413.2 -1 provisional p.R315H 1.000 165 1.2% 179 22.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like CNTNAP2 26047 genome.wustl.edu 37 7 147869377 147869377 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014141.5 +1 reviewed p.S939 1.000 159 0% 48 35.4% 0 - - - - HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 CNTNAP2 26047 genome.wustl.edu 37 7 148106552 148106552 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014141.5 +1 reviewed p.A1262D 1.000 212 0% 107 25.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL CUL1 8454 genome.wustl.edu 37 7 148495739 148495739 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003592.2 +1 validated p.N702 0.976 510 0% 379 18.2% 124 31.4% - - - "superfamily_""Winged helix"" DNA-binding domain" EZH2 2146 genome.wustl.edu 37 7 148524287 148524287 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004456.3 -1 reviewed p.D233Y 1.000 314 0% 277 14.1% 13 15.3% benign(0.07) tolerated(0.09) neutral(0.301) HMMSmart_SANT EZH2 2146 genome.wustl.edu 37 7 148526820 148526820 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004456.3 -1 reviewed p.E162* 1.000 344 0% 276 18.5% 5 0% - - - HMMSmart_SANT PDIA4 9601 genome.wustl.edu 37 7 148705293 148705293 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004911.4 -1 validated p.F363L 1.000 265 0% 247 22.7% 185 42.1% probably_damaging(0.999) tolerated(1) deleterious(0.490) superfamily_Thioredoxin-like ZNF786 136051 genome.wustl.edu 37 7 148769358 148769358 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152411.3 -1 validated p.R169I 0.013 107 0% 147 15% 7 14.2% benign(0.031) deleterious(0.02) neutral(0.385) NULL LOC100288541 100288541 genome.wustl.edu 37 7 148851441 148851441 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342803.1 -1 model p.E210D 0.000 67 0% 64 17.2% 0 - - - - NULL LOC100288541 100288541 genome.wustl.edu 37 7 148888289 148888289 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342803.1 -1 model p.R9 1.000 148 0% 204 24% 1 0% - - - superfamily_Zn-binding ribosomal proteins ZNF282 8427 genome.wustl.edu 37 7 148921620 148921620 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003575.2 +1 validated p.G633S 0.988 52 0% 53 28.3% 19 21% benign(0.002) tolerated(1) - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF777 27153 genome.wustl.edu 37 7 149129751 149129751 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015694.2 -1 validated p.R538W 1.000 53 0% 33 30.3% 18 38.8% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) superfamily_SSF57667 ZNF746 155061 genome.wustl.edu 37 7 149191116 149191116 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152557.4 -1 validated p.V124M 0.998 324 0% 366 21.9% 10 70% possibly_damaging(0.817) tolerated(0.06) deleterious(0.631) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box SSPO 23145 genome.wustl.edu 37 7 149477954 149477954 + Silent SNP C C T rs184176440 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378016 +1 known p.F575 0.230 76 0% 107 18.7% 0 - - - - HMMPfam_VWD,HMMSmart_SM00216,HMMSmart_SM00215 SSPO 23145 genome.wustl.edu 37 7 149485527 149485527 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378016 +1 known p.G1311 1.000 154 0% 167 12.6% 0 - - - - superfamily_Serine proterase inhibitors,HMMPfam_TIL SSPO 23145 genome.wustl.edu 37 7 149492670 149492670 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378016 +1 known p.S2150 1.000 68 0% 88 15.9% 0 - - - - HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like SSPO 23145 genome.wustl.edu 37 7 149496954 149496954 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378016 +1 known p.G2332R 0.000 60 0% 72 22.2% 0 - - - - NULL SSPO 23145 genome.wustl.edu 37 7 149523273 149523273 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378016 +1 known p.R4787* 0.296 49 0% 66 22.7% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ZNF862 643641 genome.wustl.edu 37 7 149557632 149557632 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099220.1 +1 provisional p.R461S 0.984 163 0% 192 20.8% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00597 RARRES2 5919 genome.wustl.edu 37 7 150037219 150037219 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002889.3 -1 reviewed p.K83N 0.660 366 0% 446 14.8% 147 0% possibly_damaging(0.911) deleterious(0.02) deleterious(0.746) superfamily_Cystatin/monellin GIMAP8 155038 genome.wustl.edu 37 7 150163915 150163915 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175571.2 +1 reviewed p.Q43H 0.000 304 0% 124 12.9% 1 0% benign(0.115) tolerated(0.22) neutral(0.051) HMMPfam_AIG1,superfamily_SSF52540 LOC100288724 100288724 genome.wustl.edu 37 7 150311703 150311703 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342806.1 -1 model p.I53 0.073 136 0% 44 22.7% 0 - - - - HMMPfam_Ion_trans TMEM176B 28959 genome.wustl.edu 37 7 150489197 150489197 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101311.1 -1 validated p.V223I 0.995 332 0% 226 23% 238 0% benign(0.036) tolerated(0.45) neutral(0.014) HMMPfam_LR8 NOS3 4846 genome.wustl.edu 37 7 150699033 150699033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000603.4 +1 reviewed p.R543W 1.000 37 0% 45 22.2% 5 0% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_Flavodoxin_1,superfamily_Flavoproteins NOS3 4846 genome.wustl.edu 37 7 150704075 150704075 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000603.4 +1 reviewed p.G640V 1.000 84 0% 102 16.7% 7 0% possibly_damaging(0.664) deleterious(0) deleterious(0.679) HMMPfam_Flavodoxin_1,superfamily_Flavoproteins ASIC3 9311 genome.wustl.edu 37 7 150747925 150747925 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020321.2 +1 reviewed p.P298 0.151 32 0% 78 16.7% 1 100% - - - HMMPfam_ASC SLC4A2 6522 genome.wustl.edu 37 7 150761424 150761424 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003040.3 +1 validated p.G63C 1.000 75 0% 109 11.9% 39 23% probably_damaging(0.99) tolerated(0.06) deleterious(0.764) NULL SLC4A2 6522 genome.wustl.edu 37 7 150761712 150761712 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003040.3 +1 validated p.P106H 0.988 89 0% 103 30.1% 28 53.5% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL SLC4A2 6522 genome.wustl.edu 37 7 150768651 150768651 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003040.3 +1 validated p.F717C 1.000 95 0% 106 20.8% 78 51.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HCO3_cotransp AGAP3 116988 genome.wustl.edu 37 7 150784185 150784185 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000469901 +1 known p.S11N 0.091 12 0% 19 42.1% 0 - - - - NULL AGAP3 116988 genome.wustl.edu 37 7 150815681 150815681 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031946.4 +1 validated p.V311M 0.995 27 0% 45 33.3% 52 23% probably_damaging(0.976) tolerated(0.25) neutral(0.455) NULL AGAP3 116988 genome.wustl.edu 37 7 150839671 150839671 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000461065 +1 known p.S234Y 1.000 36 0% 23 26.1% 44 52.2% - - - HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain AGAP3 116988 genome.wustl.edu 37 7 150840549 150840549 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031946.4 +1 validated p.R799W 1.000 151 0% 133 24.1% 53 32% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_Ankyrin repeat GBX1 2636 genome.wustl.edu 37 7 150846181 150846181 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098834.1 -1 provisional p.A196V 0.229 80 1.3% 67 19.4% 0 - benign(0.135) tolerated(0.25) neutral(0.049) NULL ABCF2 10061 genome.wustl.edu 37 7 150921085 150921085 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005692.3 -1 reviewed p.C161 1.000 247 0% 207 15.5% 33 30.3% - - - HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540 CHPF2 54480 genome.wustl.edu 37 7 150934654 150934654 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019015.1 +1 provisional p.D402 0.691 43 0% 52 23.1% 44 31.8% - - - HMMPfam_CHGN SMARCD3 6604 genome.wustl.edu 37 7 150937517 150937517 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003801.1 -1 reviewed p.V344G 1.000 410 0% 358 19.8% 17 29.4% benign(0.013) tolerated(0.25) neutral(0.037) superfamily_SWIB/MDM2 domain NUB1 51667 genome.wustl.edu 37 7 151072939 151072939 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000460712 +1 known p.C54Y 0.976 556 0% 543 21% 100 45% - - - NULL CRYGN 155051 genome.wustl.edu 37 7 151135019 151135019 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000491928 -1 known p.W111C 0.000 22 0% 24 29.2% 0 - benign(0) deleterious(0.01) neutral(0.406) NULL PRKAG2 51422 genome.wustl.edu 37 7 151372575 151372575 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016203.3 -1 reviewed p.C205 1.000 142 0% 57 17.5% 1 0% - - - NULL GALNT11 63917 genome.wustl.edu 37 7 151805333 151805333 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022087.2 +1 validated p.S308F 0.637 80 0% 87 18.4% 27 48.1% possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases MLL3 58508 genome.wustl.edu 37 7 151853341 151853341 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.A3921T 1.000 303 0% 161 23.6% 8 25% benign(0.02) - - NULL MLL3 58508 genome.wustl.edu 37 7 151860743 151860743 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.V3307M 1.000 572 0% 431 26.2% 4 75% probably_damaging(0.998) - - NULL MLL3 58508 genome.wustl.edu 37 7 151866334 151866334 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.D3152Y 1.000 296 0% 212 20.3% 1 0% probably_damaging(1) - - NULL MLL3 58508 genome.wustl.edu 37 7 151868361 151868361 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.Q3147H 0.955 372 0% 205 18.5% 1 100% probably_damaging(0.995) - - NULL MLL3 58508 genome.wustl.edu 37 7 151874967 151874967 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.R2524K 0.236 216 0% 110 22.7% 2 100% possibly_damaging(0.9) - - NULL MLL3 58508 genome.wustl.edu 37 7 151878569 151878569 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.T2126S 0.097 420 0% 214 19.2% 0 - benign(0.138) - - NULL MLL3 58508 genome.wustl.edu 37 7 151904420 151904420 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170606.2 -1 reviewed p.G1269D 0.783 781 0% 489 18.6% 2 50% possibly_damaging(0.799) - - NULL PAXIP1 22976 genome.wustl.edu 37 7 154739619 154739619 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007349.3 -1 reviewed p.L972 1.000 346 0% 165 17.6% 39 46.1% - - - HMMPfam_BRCT,HMMSmart_SM00292 PAXIP1 22976 genome.wustl.edu 37 7 154767485 154767485 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007349.3 -1 reviewed p.S332I 1.000 147 0% 139 29.5% 13 46.1% unknown(0) deleterious(0.01) - NULL EN2 2020 genome.wustl.edu 37 7 155255189 155255189 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001427.3 +1 reviewed p.T270M 0.999 145 0% 103 20.4% 8 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like CNPY1 285888 genome.wustl.edu 37 7 155299807 155299807 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103176.1 -1 validated p.E50G 0.997 309 0% 307 21.2% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL UBE3C 9690 genome.wustl.edu 37 7 156956529 156956529 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014671.2 +1 validated p.R31H 1.000 506 0% 351 19.9% 4 25% possibly_damaging(0.682) tolerated(0.26) neutral(0.277) NULL UBE3C 9690 genome.wustl.edu 37 7 157016037 157016037 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014671.2 +1 validated p.R698* 0.999 381 0% 273 22.7% 16 6.2% - - - NULL DNAJB6 10049 genome.wustl.edu 37 7 157177617 157177617 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058246.3 +1 reviewed p.S179P 0.698 549 0% 322 20.5% 114 35.9% unknown(0) tolerated(0.22) - NULL ENSG00000186921 0 genome.wustl.edu 37 7 158415068 158415068 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000335132 -1 known p.A202T 0.880 304 0% 287 11.1% 3 0% - - - NULL NCAPG2 54892 genome.wustl.edu 37 7 158486162 158486162 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017760.5 -1 validated p.N36H 1.000 458 0% 381 12.6% 9 44.4% possibly_damaging(0.775) tolerated(0.13) deleterious(0.541) NULL ESYT2 57488 genome.wustl.edu 37 7 158580768 158580768 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020728.2 -1 validated p.R273Q 1.000 226 0% 118 22% 15 40% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF596 169270 genome.wustl.edu 37 8 193762 193762 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042415.1 +1 validated p.E60 0.199 385 0% 210 21.9% 0 - - - - HMMSmart_SM00349 ZNF596 169270 genome.wustl.edu 37 8 195158 195158 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042415.1 +1 validated p.S104Y 0.157 127 0% 83 10.8% 1 0% benign(0.064) tolerated(0.06) neutral(0.327) NULL ERICH1 157697 genome.wustl.edu 37 8 623434 623434 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207332.1 -1 provisional p.P306 0.000 307 0.3% 404 24% 30 30% - - - NULL ERICH1 157697 genome.wustl.edu 37 8 623751 623751 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207332.1 -1 provisional p.G201C 0.000 230 0% 290 19% 20 35% probably_damaging(0.955) tolerated(0.06) deleterious(0.721) NULL DLGAP2 9228 genome.wustl.edu 37 8 1581066 1581066 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004745.3 +1 reviewed p.A475D 1.000 282 0% 238 23.9% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL ARHGEF10 9639 genome.wustl.edu 37 8 1876701 1876701 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014629.2 +1 reviewed p.L936 1.000 196 0% 212 25% 7 85.7% - - - superfamily_WD40_like MYOM2 9172 genome.wustl.edu 37 8 2024245 2024245 + Missense_Mutation SNP C C T rs138100876 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003970.2 +1 validated p.A382V 1.000 44 0% 54 22.2% 1 0% benign(0.426) tolerated(0.52) neutral(0.147) superfamily_FN_III-like CSMD1 64478 genome.wustl.edu 37 8 2855701 2855701 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.T2738A 1.000 224 0% 83 25.3% 0 - probably_damaging(1) tolerated(0.86) deleterious(0.500) superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 2857535 2857535 + Silent SNP G G A rs185898018 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.S2717 0.003 96 0% 52 19.2% 0 - - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 2910169 2910169 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.A2493D 1.000 115 0% 60 23.3% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL CSMD1 64478 genome.wustl.edu 37 8 3047537 3047537 + Silent SNP G G A rs192606706 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.F1766 0.958 174 0% 105 22.9% 0 - - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 3081342 3081342 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.P1466S 1.000 138 0% 67 26.9% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD1 64478 genome.wustl.edu 37 8 3087598 3087598 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.R1438W 1.000 234 0% 72 18.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 3165852 3165852 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033225.5 -1 validated p.P1270T 0.994 296 0.7% 92 27.2% 0 - benign(0.392) tolerated(0.06) neutral(0.448) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain ANGPT2 285 genome.wustl.edu 37 8 6420447 6420447 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001147.2 -1 reviewed p.Q3H 0.956 105 1% 75 13.3% 2 0% possibly_damaging(0.502) deleterious(0) deleterious(0.612) NULL AGPAT5 55326 genome.wustl.edu 37 8 6605220 6605220 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018361.3 +1 reviewed p.P206S 1.000 369 0% 148 19.6% 16 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PlsC,superfamily_SSF69593 XKR5 389610 genome.wustl.edu 37 8 6669628 6669628 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409172 -1 known p.P383 0.000 131 0% 112 22.3% 2 50% - - - NULL XKR5 389610 genome.wustl.edu 37 8 6690240 6690240 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207411.4 -1 validated p.R81W 1.000 132 0% 157 23.6% 0 - - - - HMMPfam_XK-related SPAG11B 10407 genome.wustl.edu 37 8 7308297 7308297 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058201.2 -1 reviewed p.V114I 0.000 1254 0% 554 12.5% 0 - possibly_damaging(0.792) tolerated(0.28) neutral(0.329) HMMPfam_Defensin_beta SPAG11B 10407 genome.wustl.edu 37 8 7308671 7308671 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016512.3 -1 reviewed p.D89N 0.000 404 0% 219 14.6% 0 - unknown(0) tolerated(0.19) - NULL SGK223 157285 genome.wustl.edu 37 8 8197041 8197041 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080826.1 -1 validated p.G756V 1.000 186 0% 85 18.8% 27 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MFHAS1 9258 genome.wustl.edu 37 8 8749618 8749618 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004225.2 -1 reviewed p.G317 0.989 34 0% 58 29.3% 13 38.4% - - - HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like TNKS 8658 genome.wustl.edu 37 8 9413685 9413685 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003747.2 +1 validated p.R79L 0.433 40 0% 42 14.3% 1 0% unknown(0) deleterious(0.03) - NULL TNKS 8658 genome.wustl.edu 37 8 9562213 9562213 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003747.2 +1 validated p.R383Q 0.999 524 0% 143 23.8% 1 100% possibly_damaging(0.806) deleterious(0.04) deleterious(0.652) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat PRSS55 203074 genome.wustl.edu 37 8 10388877 10388877 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198464.2 +1 validated p.A140 0.000 119 0% 82 31.7% 0 - - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases RP1L1 94137 genome.wustl.edu 37 8 10464781 10464781 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178857.5 -1 validated p.R2276M 0.053 143 0% 141 17.7% 0 - unknown(0) deleterious(0) - NULL RP1L1 94137 genome.wustl.edu 37 8 10464900 10464900 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178857.5 -1 validated p.E2236D 0.000 478 0% 454 17.8% 0 - unknown(0) tolerated(0.11) - HMMPfam_S-antigen RP1L1 94137 genome.wustl.edu 37 8 10467097 10467097 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178857.5 -1 validated p.S1504Y 0.000 16 0% 23 26.1% 0 - unknown(0) deleterious(0) - NULL RP1L1 94137 genome.wustl.edu 37 8 10480293 10480293 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178857.5 -1 validated p.G140D 0.415 30 0% 35 17.1% 1 0% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) superfamily_SSF89837 MTMR9 66036 genome.wustl.edu 37 8 11162452 11162452 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015458.3 +1 reviewed p.R174W 0.998 415 0% 124 23.4% 5 40% possibly_damaging(0.819) deleterious(0.03) deleterious(0.674) HMMPfam_Myotub-related,superfamily_SSF52799 MTMR9 66036 genome.wustl.edu 37 8 11172535 11172535 + Missense_Mutation SNP C C T rs141801830 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015458.3 +1 reviewed p.R359C 1.000 383 0% 175 22.9% 4 25% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF52799 MTMR9 66036 genome.wustl.edu 37 8 11180244 11180244 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015458.3 +1 reviewed p.R533* 0.879 240 0% 186 19.9% 2 0% - - - NULL SLC35G5 83650 genome.wustl.edu 37 8 11189428 11189428 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054028.1 +1 reviewed p.G271 0.940 459 0% 566 22.1% 0 - - - - superfamily_SSF103481 ENSG00000205879 0 genome.wustl.edu 37 8 12033211 12033211 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000382200 -1 known p.R24W 0.072 280 0% 265 10.6% 2 0% - - - NULL LONRF1 91694 genome.wustl.edu 37 8 12592878 12592878 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152271.3 -1 provisional p.G495R 1.000 279 0% 137 23.4% 7 57.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box DLC1 10395 genome.wustl.edu 37 8 12955994 12955994 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182643.2 -1 reviewed p.Q1027 1.000 280 0% 218 26.1% 3 0% - - - NULL DLC1 10395 genome.wustl.edu 37 8 12957119 12957119 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182643.2 -1 reviewed p.I909 1.000 245 0% 166 21.1% 5 0% - - - NULL TUSC3 7991 genome.wustl.edu 37 8 15480695 15480695 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006765.2 +1 reviewed p.R82L 1.000 170 0% 144 25% 35 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_OST3_OST6,superfamily_Thioredoxin-like MSR1 4481 genome.wustl.edu 37 8 15977937 15977937 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138715.2 -1 reviewed p.H404 0.293 65 0% 42 21.4% 3 0% - - - HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like CNOT7 29883 genome.wustl.edu 37 8 17088235 17088235 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013354.5 -1 reviewed p.Q284H 1.000 280 0% 124 16.9% 94 43.6% possibly_damaging(0.926) tolerated(0.12) deleterious(0.635) NULL SLC7A2 6542 genome.wustl.edu 37 8 17419458 17419458 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003046.5 +1 validated p.L543I 0.075 199 0% 71 26.8% 7 28.5% benign(0.335) tolerated(0.06) neutral(0.428) NULL FGL1 2267 genome.wustl.edu 37 8 17731618 17731618 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004467.3 -1 reviewed p.K138E 0.267 122 3.3% 109 17.4% 0 - benign(0) tolerated(1) - HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C FGL1 2267 genome.wustl.edu 37 8 17739683 17739683 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004467.3 -1 reviewed p.L23 0.000 117 0% 52 26.9% 0 - - - - NULL PCM1 5108 genome.wustl.edu 37 8 17817846 17817846 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006197.3 +1 validated p.L739I 1.000 175 0% 86 20.9% 13 0% possibly_damaging(0.886) tolerated(0.31) neutral(0.373) NULL PCM1 5108 genome.wustl.edu 37 8 17823649 17823649 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006197.3 +1 validated p.W999* 1.000 422 0% 157 21.7% 14 0% - - - NULL PCM1 5108 genome.wustl.edu 37 8 17830019 17830019 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006197.3 +1 validated p.E1256* 1.000 158 0% 62 21% 19 5.2% - - - NULL ASAH1 427 genome.wustl.edu 37 8 17922036 17922036 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004315.4 -1 reviewed p.E145D 1.000 180 0% 116 20.7% 36 27.7% benign(0.035) tolerated(0.53) neutral(0.009) NULL PSD3 23362 genome.wustl.edu 37 8 18729179 18729179 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015310.3 -1 validated p.Q399* 0.002 537 0% 142 18.3% 2 100% - - - NULL INTS10 55174 genome.wustl.edu 37 8 19701626 19701626 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018142.2 +1 validated p.G587W 1.000 285 0% 114 14% 107 24.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GFRA2 2675 genome.wustl.edu 37 8 21550813 21550813 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001495.4 -1 reviewed p.L458M 0.996 369 0.3% 223 25.6% 3 0% benign(0.235) tolerated(0.2) neutral(0.073) NULL DOK2 9046 genome.wustl.edu 37 8 21768212 21768212 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003974.2 -1 reviewed p.R197M 1.000 143 0% 171 25.7% 17 0% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729 NPM2 10361 genome.wustl.edu 37 8 21882774 21882774 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182795.1 +1 validated p.S5 0.007 40 0% 45 24.4% 4 0% - - - NULL EPB49 2039 genome.wustl.edu 37 8 21938696 21938696 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114135.2 +1 validated p.R366W 0.995 112 0% 147 20.4% 24 45.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_VHP Villin headpiece domain FAM160B2 64760 genome.wustl.edu 37 8 21955096 21955096 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022749.5 +1 validated p.L123 0.996 76 0% 107 24.3% 15 46.6% - - - HMMPfam_RAI16-like FAM160B2 64760 genome.wustl.edu 37 8 21956813 21956813 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022749.5 +1 validated p.A365T 1.000 127 0% 88 18.2% 18 55.5% possibly_damaging(0.476) tolerated(0.1) neutral(0.444) HMMPfam_RAI16-like FAM160B2 64760 genome.wustl.edu 37 8 21957342 21957342 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022749.5 +1 validated p.G427R 0.007 51 0% 46 34.8% 20 20% benign(0.002) tolerated(0.36) neutral(0.020) HMMPfam_RAI16-like FAM160B2 64760 genome.wustl.edu 37 8 21960076 21960076 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022749.5 +1 validated p.P677H 1.000 89 0% 106 21.7% 54 38.8% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL HR 55806 genome.wustl.edu 37 8 21976479 21976479 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005144.4 -1 reviewed p.R1066H 1.000 25 0% 33 24.2% 1 0% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMSmart_SM00558 HR 55806 genome.wustl.edu 37 8 21976786 21976786 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005144.4 -1 reviewed p.P996 1.000 65 0% 60 21.7% 0 - - - - HMMSmart_SM00558 HR 55806 genome.wustl.edu 37 8 21984715 21984715 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005144.4 -1 reviewed p.A414T 1.000 24 0% 27 29.6% 0 - benign(0.06) deleterious(0.02) neutral(0.387) NULL LGI3 203190 genome.wustl.edu 37 8 22006231 22006231 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139278.2 -1 validated p.G363 1.000 75 0% 74 23% 0 - - - - HMMPfam_EPTP BMP1 649 genome.wustl.edu 37 8 22052417 22052417 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006129.4 +1 reviewed p.V542F 0.998 99 0% 118 20.3% 8 12.5% benign(0.002) deleterious(0.04) neutral(0.349) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain BMP1 649 genome.wustl.edu 37 8 22054866 22054866 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006129.4 +1 reviewed p.N680 1.000 201 0% 174 19% 35 11.4% - - - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain BMP1 649 genome.wustl.edu 37 8 22064845 22064845 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006129.4 +1 reviewed p.Q797H 1.000 66 0% 91 24.2% 9 11.1% benign(0) tolerated(1) - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain PHYHIP 9796 genome.wustl.edu 37 8 22079137 22079137 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099335.1 -1 validated p.P241L 1.000 30 0% 31 35.5% 3 0% probably_damaging(0.992) tolerated(0.33) deleterious(0.472) NULL PIWIL2 55124 genome.wustl.edu 37 8 22173769 22173769 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135721.1 +1 validated p.M740I 1.000 305 0% 106 21.7% 0 - probably_damaging(0.966) deleterious(0.01) deleterious(0.814) HMMPfam_Piwi,superfamily_Ribonuclease H-like SORBS3 10174 genome.wustl.edu 37 8 22414410 22414410 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005775.4 +1 validated p.A135T 1.000 30 0% 47 12.8% 4 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Sorb,HMMSmart_SM00459 PDLIM2 64236 genome.wustl.edu 37 8 22451394 22451394 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021630.4 +1 validated p.A344T 0.000 37 0% 29 24.1% 35 17.1% benign(0) tolerated(0.14) neutral(0.249) NULL C8orf58 541565 genome.wustl.edu 37 8 22460156 22460156 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013842.1 +1 validated p.R329M 0.996 147 0% 185 23.2% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL BIN3 55909 genome.wustl.edu 37 8 22494047 22494047 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018688.4 -1 reviewed p.A51T 1.000 301 0% 214 16.4% 31 38.7% possibly_damaging(0.93) deleterious(0) deleterious(0.821) HMMPfam_BAR,HMMSmart_SM00721 EGR3 1960 genome.wustl.edu 37 8 22548553 22548553 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004430.2 -1 reviewed p.H199Q 1.000 165 0% 248 28.2% 0 - possibly_damaging(0.602) tolerated(1) neutral(0.208) NULL RHOBTB2 23221 genome.wustl.edu 37 8 22862969 22862969 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015178.2 +1 validated p.R93C 0.999 221 0.5% 258 26% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RHO,superfamily_SSF52540 RHOBTB2 23221 genome.wustl.edu 37 8 22864872 22864872 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015178.2 +1 validated p.R372W 1.000 71 0% 84 27.4% 5 60% possibly_damaging(0.948) deleterious(0.01) deleterious(0.796) HMMSmart_BTB,superfamily_BTB/POZ_fold RHOBTB2 23221 genome.wustl.edu 37 8 22864942 22864942 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015178.2 +1 validated p.S395N 1.000 103 0% 94 22.3% 7 57.1% possibly_damaging(0.623) deleterious(0.04) deleterious(0.566) HMMSmart_BTB,superfamily_BTB/POZ_fold RHOBTB2 23221 genome.wustl.edu 37 8 22865224 22865224 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015178.2 +1 validated p.R489Q 1.000 149 0% 124 25% 19 36.8% probably_damaging(1) tolerated(0.14) deleterious(0.750) superfamily_BTB/POZ_fold RHOBTB2 23221 genome.wustl.edu 37 8 22873176 22873176 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015178.2 +1 validated p.D629G 0.999 161 0% 169 18.3% 11 45.4% benign(0.001) tolerated(0.1) neutral(0.286) NULL TNFRSF10C 8794 genome.wustl.edu 37 8 22960665 22960665 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003841.2 +1 reviewed p.V11I 0.128 49 0% 31 16.1% 1 0% probably_damaging(0.965) - - NULL ENTPD4 9583 genome.wustl.edu 37 8 23294507 23294507 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004901.3 -1 validated p.T438 0.786 232 0% 171 23.4% 8 62.5% - - - HMMPfam_GDA1_CD39 ENTPD4 9583 genome.wustl.edu 37 8 23305332 23305332 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004901.3 -1 validated p.I91 0.004 424 0% 295 22.4% 5 20% - - - HMMPfam_GDA1_CD39 STC1 6781 genome.wustl.edu 37 8 23708988 23708988 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003155.2 -1 reviewed p.K106N 1.000 378 0% 251 22.7% 16 68.7% possibly_damaging(0.893) deleterious(0.01) deleterious(0.758) HMMPfam_Stanniocalcin ADAM28 10863 genome.wustl.edu 37 8 24171052 24171052 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014265.4 +1 reviewed p.D179N 0.000 431 0% 152 20.4% 5 40% benign(0.002) tolerated(0.08) neutral(0.300) NULL ADAM28 10863 genome.wustl.edu 37 8 24199270 24199270 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014265.4 +1 reviewed p.K610N 0.997 428 0.5% 144 19.4% 36 44.4% possibly_damaging(0.574) deleterious(0.01) deleterious(0.603) HMMSmart_SM00608 ADAM7 8756 genome.wustl.edu 37 8 24349556 24349556 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000380789 +1 known p.C499 1.000 195 0% 38 18.4% 0 - - - - HMMPfam_ADAM_CR,HMMSmart_SM00608 NEFM 4741 genome.wustl.edu 37 8 24774752 24774752 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005382.2 +1 reviewed p.V462L 1.000 280 0% 281 21% 0 - unknown(0) deleterious(0.01) - NULL NEFM 4741 genome.wustl.edu 37 8 24775100 24775100 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005382.2 +1 reviewed p.E578* 0.898 264 0% 233 21.9% 0 - - - - NULL DOCK5 80005 genome.wustl.edu 37 8 25198418 25198418 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024940.6 +1 validated p.D785Y 1.000 614 0% 333 18.6% 1 0% benign(0.364) deleterious(0.04) neutral(0.465) NULL DOCK5 80005 genome.wustl.edu 37 8 25234867 25234867 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024940.6 +1 validated p.Y1288C 1.000 443 0% 137 21.2% 2 0% probably_damaging(0.974) tolerated(0.17) deleterious(0.475) NULL PPP2R2A 5520 genome.wustl.edu 37 8 26196503 26196503 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002717.3 +1 reviewed p.E60D 1.000 289 0% 154 18.8% 13 7.6% benign(0) tolerated(0.8) neutral(0.001) superfamily_WD40 repeat-like PPP2R2A 5520 genome.wustl.edu 37 8 26221334 26221334 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002717.3 +1 reviewed p.M300I 1.000 448 0% 232 25.4% 25 28% benign(0) tolerated(1) - HMMSmart_SM00320,superfamily_WD40 repeat-like ADRA1A 148 genome.wustl.edu 37 8 26722336 26722336 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033303.3 -1 reviewed p.V51I 1.000 184 0% 222 26.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_SSF81321 PTK2B 2185 genome.wustl.edu 37 8 27279872 27279872 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004103.3 +1 reviewed p.A175T 1.000 65 0% 37 13.5% 6 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 PTK2B 2185 genome.wustl.edu 37 8 27311788 27311788 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004103.3 +1 reviewed p.G905S 1.000 333 0% 183 25.1% 32 28.1% benign(0.121) tolerated(0.13) neutral(0.262) HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase CHRNA2 1135 genome.wustl.edu 37 8 27321012 27321012 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000742.3 -1 reviewed p.E316D 1.000 464 0% 264 22% 0 - benign(0) tolerated(0.13) neutral(0.253) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore CLU 1191 genome.wustl.edu 37 8 27457434 27457434 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001831.2 -1 reviewed p.E395K 0.740 211 0.5% 142 21.1% 218 43.5% benign(0.035) tolerated(0.28) neutral(0.034) HMMPfam_Clusterin,HMMSmart_CLa SCARA3 51435 genome.wustl.edu 37 8 27509111 27509111 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016240.2 +1 reviewed p.L65F 1.000 152 0% 119 19.3% 7 57.1% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ESCO2 157570 genome.wustl.edu 37 8 27634592 27634592 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017420.2 +1 reviewed p.A256V 0.015 124 0% 131 20.6% 2 100% benign(0.002) tolerated(0.08) neutral(0.300) NULL SCARA5 286133 genome.wustl.edu 37 8 27737093 27737093 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173833.4 -1 provisional p.F448 0.961 121 0% 89 28.1% 0 - - - - HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like C8orf80 389643 genome.wustl.edu 37 8 27927837 27927837 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010906.1 -1 provisional p.R27I 0.802 394 0% 185 20.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL FZD3 7976 genome.wustl.edu 37 8 28378264 28378264 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017412.2 +1 reviewed p.R100H 1.000 535 0% 192 16.7% 9 33.3% probably_damaging(0.977) deleterious(0) deleterious(0.863) superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063 KIF13B 23303 genome.wustl.edu 37 8 29005030 29005030 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015254.3 -1 validated p.H635Y 0.164 327 0% 102 19.6% 14 64.2% benign(0.067) deleterious(0.03) neutral(0.369) NULL KIF13B 23303 genome.wustl.edu 37 8 29007848 29007848 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015254.3 -1 validated p.D530N 1.000 502 0.2% 160 20.6% 8 37.5% probably_damaging(1) tolerated(0.78) deleterious(0.501) HMMPfam_FHA,superfamily_SMAD/FHA domain DUSP4 1846 genome.wustl.edu 37 8 29194615 29194615 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001394.5 -1 reviewed p.S371 0.107 52 0% 33 33.3% 77 46.7% - - - NULL DUSP4 1846 genome.wustl.edu 37 8 29194753 29194753 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001394.5 -1 reviewed p.G325 0.996 39 0% 28 14.3% 118 35.5% - - - HMMPfam_DSPc,HMMSmart_SM00404,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II MBOAT4 619373 genome.wustl.edu 37 8 29989718 29989718 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100916.1 -1 validated p.C350Y 0.983 177 0% 68 20.6% 0 - probably_damaging(0.976) deleterious(0.02) deleterious(0.801) HMMPfam_MBOAT PPP2CB 5516 genome.wustl.edu 37 8 30651524 30651524 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009552.1 -1 reviewed p.A216V 1.000 151 0% 54 20.4% 162 40.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases PPP2CB 5516 genome.wustl.edu 37 8 30651555 30651555 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009552.1 -1 reviewed p.R206C 1.000 164 0% 63 22.2% 117 41% benign(0.081) deleterious(0) neutral(0.451) HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases TEX15 56154 genome.wustl.edu 37 8 30694877 30694877 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031271.3 -1 validated p.V2592M 0.000 224 0% 84 21.4% 0 - possibly_damaging(0.928) tolerated(0.09) deleterious(0.672) NULL TEX15 56154 genome.wustl.edu 37 8 30704353 30704353 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031271.3 -1 validated p.N727 0.000 227 0% 66 21.2% 0 - - - - NULL WRN 7486 genome.wustl.edu 37 8 30938675 30938675 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000553.4 +1 reviewed p.V378L 0.000 364 0% 144 19.4% 6 16.6% benign(0) tolerated(0.53) neutral(0.007) NULL NRG1 3084 genome.wustl.edu 37 8 32613952 32613952 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013956.3 +1 reviewed p.R284W 0.992 234 0% 120 25% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Neuregulin NRG1 3084 genome.wustl.edu 37 8 32620844 32620844 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013960.3 +1 reviewed p.G459 1.000 343 0% 93 18.3% 0 - - - - HMMPfam_Neuregulin FUT10 84750 genome.wustl.edu 37 8 33310933 33310933 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032664.3 -1 validated p.L59 0.000 317 0% 115 20% 1 0% - - - HMMPfam_Glyco_transf_10 TTI2 80185 genome.wustl.edu 37 8 33360984 33360984 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102401.1 -1 validated p.E408K 1.000 508 0% 237 17.7% 43 32.5% benign(0.249) tolerated(0.43) neutral(0.039) NULL UNC5D 137970 genome.wustl.edu 37 8 35425654 35425654 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080872.2 +1 validated p.Q121* 1.000 262 0% 164 16.5% 0 - - - - superfamily_Immunoglobulin UNC5D 137970 genome.wustl.edu 37 8 35608255 35608255 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080872.2 +1 validated p.G697 1.000 443 0% 91 18.7% 0 - - - - NULL KCNU1 157855 genome.wustl.edu 37 8 36642000 36642000 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031836.2 +1 validated p.Q24 0.004 455 0% 204 11.8% 0 - - - - NULL KCNU1 157855 genome.wustl.edu 37 8 36780082 36780082 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031836.2 +1 validated p.L891I 0.975 569 0% 211 18.5% 0 - probably_damaging(0.955) deleterious(0.01) deleterious(0.804) NULL ERLIN2 11160 genome.wustl.edu 37 8 37607352 37607352 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007175.6 +1 validated p.R180H 1.000 274 0.7% 160 16.9% 19 36.8% probably_damaging(0.995) tolerated(0.12) deleterious(0.718) HMMPfam_Band_7,HMMSmart_SM00244 ERLIN2 11160 genome.wustl.edu 37 8 37609199 37609199 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007175.6 +1 validated p.E235 1.000 286 0% 167 19.8% 18 38.8% - - - NULL GPR124 25960 genome.wustl.edu 37 8 37687014 37687014 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032777.8 +1 validated p.S164Y 1.000 272 0% 336 19% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like GPR124 25960 genome.wustl.edu 37 8 37693098 37693098 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032777.8 +1 validated p.Q620 1.000 68 0% 87 34.5% 8 12.5% - - - NULL GPR124 25960 genome.wustl.edu 37 8 37693270 37693270 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032777.8 +1 validated p.V678I 1.000 41 2.4% 44 22.7% 4 0% probably_damaging(0.995) tolerated(0.25) deleterious(0.494) NULL BRF2 55290 genome.wustl.edu 37 8 37702560 37702560 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018310.2 -1 reviewed p.S236 0.024 35 0% 36 19.4% 39 41% - - - superfamily_Cyclin_like RAB11FIP1 80223 genome.wustl.edu 37 8 37729302 37729302 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002814.2 -1 validated p.P1006 0.001 118 0% 67 22.4% 4 50% - - - NULL RAB11FIP1 80223 genome.wustl.edu 37 8 37729441 37729441 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002814.2 -1 validated p.P960H 0.998 227 0% 102 15.7% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ADRB3 155 genome.wustl.edu 37 8 37823518 37823518 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000025.2 -1 reviewed p.A157V 0.730 24 0% 23 34.8% 0 - benign(0.199) tolerated(1) neutral(0.019) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ASH2L 9070 genome.wustl.edu 37 8 37993267 37993267 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004674.3 +1 validated p.L568M 1.000 285 0% 140 24.3% 38 28.9% possibly_damaging(0.924) tolerated(0.07) deleterious(0.692) HMMSmart_SM00449 STAR 6770 genome.wustl.edu 37 8 38003855 38003855 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000349.2 -1 reviewed p.E139 0.023 291 0% 177 27.7% 1 100% - - - HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like BAG4 9530 genome.wustl.edu 37 8 38065117 38065117 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004874.2 +1 reviewed p.Y156H 0.940 324 0% 140 22.9% 6 50% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) NULL BAG4 9530 genome.wustl.edu 37 8 38066577 38066577 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004874.2 +1 reviewed p.R227H 0.995 224 0% 107 15% 5 40% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL LETM2 137994 genome.wustl.edu 37 8 38260109 38260109 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144652.1 +1 provisional p.G256R 1.000 184 0% 93 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LETM1 FGFR1 2260 genome.wustl.edu 37 8 38273433 38273433 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023110.2 -1 reviewed p.C603 0.729 150 0% 114 17.5% 30 36.6% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) FGFR1 2260 genome.wustl.edu 37 8 38277190 38277190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023110.2 -1 reviewed p.T382I 0.983 140 0% 116 18.1% 19 26.3% benign(0) tolerated(1) - NULL C8orf86 389649 genome.wustl.edu 37 8 38373976 38373976 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207412.1 -1 predicted p.T124P 0.000 359 0% 186 14% 0 - unknown(0) - - NULL HTRA4 203100 genome.wustl.edu 37 8 38834106 38834106 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153692.3 +1 reviewed p.V207L 0.999 435 0% 534 18% 1 0% possibly_damaging(0.735) tolerated(0.06) deleterious(0.591) HMMPfam_Trypsin,superfamily_Pept_Ser_Cys ADAM9 8754 genome.wustl.edu 37 8 38959430 38959430 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003816.2 +1 reviewed p.P783S 1.000 165 0% 229 20.5% 71 40.8% possibly_damaging(0.943) tolerated(0.23) neutral(0.429) NULL ADAM2 2515 genome.wustl.edu 37 8 39682417 39682417 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001464.3 -1 reviewed e4-1 0.994 186 0% 68 20.6% 0 - - - - - IDO1 3620 genome.wustl.edu 37 8 39782751 39782751 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002164.4 +1 validated p.G239 0.997 93 0% 55 18.2% 1787 46.7% - - - HMMPfam_IDO IDO2 169355 genome.wustl.edu 37 8 39871183 39871183 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194294.2 +1 validated p.V286 0.998 317 0% 108 17.6% 0 - - - - HMMPfam_IDO C8orf4 56892 genome.wustl.edu 37 8 40011218 40011218 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020130.3 +1 reviewed p.G56E 1.000 375 0% 191 19.9% 63 31.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL AGPAT6 137964 genome.wustl.edu 37 8 41466955 41466955 + Missense_Mutation SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178819.3 +1 validated p.E62D 1.000 254 0% 203 16.3% 28 10.7% possibly_damaging(0.912) tolerated(0.15) deleterious(0.605) NULL AGPAT6 137964 genome.wustl.edu 37 8 41467224 41467224 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178819.3 +1 validated p.R96C 1.000 181 0% 147 36.1% 23 30.4% benign(0.386) deleterious(0.01) deleterious(0.529) NULL ANK1 286 genome.wustl.edu 37 8 41519260 41519260 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415018 -1 known p.P1893L 0.000 47 0% 52 30.8% 0 - - - - NULL ANK1 286 genome.wustl.edu 37 8 41559103 41559103 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142446.1 -1 reviewed p.T842I 1.000 317 0% 306 22.9% 2 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ANK ANK1 286 genome.wustl.edu 37 8 41583426 41583426 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142446.1 -1 reviewed p.G188 1.000 24 0% 36 25% 1 0% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK KAT6A 7994 genome.wustl.edu 37 8 41789991 41789991 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099412.1 -1 validated p.M1916T 1.000 328 0% 337 13.4% 15 20% possibly_damaging(0.662) deleterious(0) deleterious(0.678) NULL KAT6A 7994 genome.wustl.edu 37 8 41791265 41791265 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099412.1 -1 validated p.S1491 1.000 300 0% 276 23.9% 12 50% - - - NULL KAT6A 7994 genome.wustl.edu 37 8 41795004 41795004 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099412.1 -1 validated p.T1041I 1.000 256 0% 272 25% 5 40% unknown(0) deleterious(0) - NULL PLAT 5327 genome.wustl.edu 37 8 42037840 42037840 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000930.3 -1 reviewed p.G381D 0.546 214 0% 195 23.6% 12 0% benign(0.048) tolerated(0.33) neutral(0.027) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases IKBKB 3551 genome.wustl.edu 37 8 42178326 42178326 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001556.1 +1 validated p.P551L 0.999 77 0% 63 20.6% 30 40% probably_damaging(1) deleterious(0) deleterious(0.945) NULL POLB 5423 genome.wustl.edu 37 8 42226801 42226801 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002690.1 +1 provisional p.L241F 1.000 387 0% 315 14.9% 55 47.2% probably_damaging(0.995) deleterious(0.04) deleterious(0.806) HMMSmart_POLXc,superfamily_SSF81301 SLC20A2 6575 genome.wustl.edu 37 8 42294689 42294689 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006749.3 -1 provisional p.A447 0.001 46 0% 42 21.4% 16 25% - - - HMMPfam_PHO4 SLC20A2 6575 genome.wustl.edu 37 8 42329827 42329827 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006749.3 -1 provisional p.D28N 1.000 161 0% 68 22.1% 4 25% unknown(0) deleterious(0) - HMMPfam_PHO4 C8orf40 114926 genome.wustl.edu 37 8 42401620 42401620 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135674.1 +1 validated p.A2D 1.000 386 0% 425 18.8% 44 40.9% benign(0.128) tolerated(0.08) neutral(0.310) NULL CHRNA6 8973 genome.wustl.edu 37 8 42611644 42611644 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004198.2 -1 provisional p.S233Y 1.000 336 0% 133 21.8% 0 - benign(0.202) tolerated(0.47) neutral(0.030) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like THAP1 55145 genome.wustl.edu 37 8 42693285 42693285 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018105.2 -1 reviewed p.Q154H 0.959 443 0% 450 22.7% 12 41.6% benign(0.203) deleterious(0.02) neutral(0.403) NULL RNF170 81790 genome.wustl.edu 37 8 42711483 42711483 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030954.3 -1 validated p.R199H 1.000 207 0% 187 16.6% 11 54.5% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL HGSNAT 138050 genome.wustl.edu 37 8 43054626 43054626 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152419.2 +1 reviewed p.H608Y 0.996 159 0% 113 11.5% 33 30.3% benign(0.002) tolerated(1) - NULL ENSG00000252594 0 genome.wustl.edu 37 8 47742674 47742674 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000516785 +1 novel NULL 0.996 163 0% 54 13% 0 - - - - - ENSG00000200986 0 genome.wustl.edu 37 8 48043439 48043439 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000364116 -1 novel NULL 0.000 33 0% 39 28.2% 0 - - - - - KIAA0146 23514 genome.wustl.edu 37 8 48352938 48352938 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080394.1 +1 predicted p.A311T 0.256 244 0% 88 17% 25 32% benign(0.001) tolerated(0.4) neutral(0.016) NULL PRKDC 5591 genome.wustl.edu 37 8 48715964 48715964 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314191 -1 known p.S3274R 0.010 81 0% 33 15.2% 11 63.6% benign(0) tolerated(0.79) neutral(0.001) HMMPfam_FAT PRKDC 5591 genome.wustl.edu 37 8 48719860 48719860 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314191 -1 known p.E3194D 0.999 430 0% 208 22.1% 9 66.6% benign(0.015) tolerated(0.44) neutral(0.013) HMMPfam_FAT PRKDC 5591 genome.wustl.edu 37 8 48765343 48765343 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314191 -1 known p.Y2298C 1.000 322 0% 169 19.5% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat PRKDC 5591 genome.wustl.edu 37 8 48777302 48777302 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314191 -1 known p.G1795S 0.000 135 0% 55 23.6% 3 33.3% benign(0.069) tolerated(0.73) neutral(0.006) superfamily_ARM repeat PRKDC 5591 genome.wustl.edu 37 8 48798619 48798619 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081640.1 -1 validated p.P1554H 0.998 193 1% 102 11.8% 2 0% - - - NULL PRKDC 5591 genome.wustl.edu 37 8 48811031 48811031 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314191 -1 known p.R1155* 0.962 290 0% 180 18.9% 0 - - - - superfamily_ARM repeat PRKDC 5591 genome.wustl.edu 37 8 48848994 48848994 + Silent SNP C C T rs55910075 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314191 -1 known p.Q399 1.000 274 0% 143 18.9% 1 0% - - - superfamily_ARM repeat MCM4 4173 genome.wustl.edu 37 8 48885491 48885491 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005914.2 +1 reviewed p.A668V 0.138 194 0% 149 16.8% 59 10.1% benign(0.11) deleterious(0.01) neutral(0.414) HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540 UBE2V2 7336 genome.wustl.edu 37 8 48955608 48955608 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003350.2 +1 reviewed p.R11H 1.000 264 0% 102 23.5% 33 36.3% benign(0.002) deleterious(0.02) neutral(0.383) superfamily_UBC-like LOC644334 644334 genome.wustl.edu 37 8 49826712 49826712 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_927497.4 +1 model p.E151K 0.994 201 0.5% 168 19% 0 - - - - HMMPfam_FERM_N,superfamily_Ubiquitin-like PXDNL 137902 genome.wustl.edu 37 8 52232513 52232513 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144651.4 -1 validated p.G1444* 0.029 177 0% 63 20.6% 0 - - - - HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1 PXDNL 137902 genome.wustl.edu 37 8 52469440 52469440 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144651.4 -1 validated p.D114Y 0.023 305 0% 91 22% 0 - possibly_damaging(0.637) deleterious(0.02) deleterious(0.606) HMMSmart_SM00369,superfamily_L domain-like RB1CC1 9821 genome.wustl.edu 37 8 53573746 53573746 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014781.4 -1 reviewed p.I485S 1.000 220 0% 97 15.5% 7 57.1% benign(0.039) deleterious(0) neutral(0.447) NULL OPRK1 4986 genome.wustl.edu 37 8 54142009 54142009 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000912.3 -1 validated p.A331T 1.000 204 0% 78 23.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF81321 RGS20 8601 genome.wustl.edu 37 8 54870965 54870965 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170587.2 +1 validated p.A372T 0.787 197 0% 134 21.6% 1 0% benign(0.002) tolerated(0.55) neutral(0.007) HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS RP1 6101 genome.wustl.edu 37 8 55534751 55534751 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006269.1 +1 reviewed p.G230 1.000 256 0% 355 21.7% 1 0% - - - HMMSmart_DCX,superfamily_SSF89837 RP1 6101 genome.wustl.edu 37 8 55537632 55537632 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006269.1 +1 reviewed p.S397I 0.000 279 0% 232 26.7% 0 - possibly_damaging(0.507) deleterious(0) deleterious(0.614) NULL RP1 6101 genome.wustl.edu 37 8 55541781 55541781 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006269.1 +1 reviewed p.S1780N 0.993 238 0% 176 17.6% 0 - possibly_damaging(0.807) deleterious(0.03) deleterious(0.668) NULL XKR4 114786 genome.wustl.edu 37 8 56270407 56270407 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052898.1 +1 provisional p.V326I 1.000 368 0% 228 22.8% 1 0% benign(0.005) tolerated(1) - HMMPfam_XK-related XKR4 114786 genome.wustl.edu 37 8 56436592 56436592 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052898.1 +1 provisional p.P587T 1.000 183 0% 129 13.2% 0 - possibly_damaging(0.951) tolerated(0.15) deleterious(0.635) NULL TMEM68 137695 genome.wustl.edu 37 8 56675382 56675382 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152417.1 -1 provisional p.W46* 1.000 288 0% 178 28.7% 7 28.5% - - - NULL TMEM68 137695 genome.wustl.edu 37 8 56675478 56675478 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152417.1 -1 provisional p.S14F 0.553 209 0% 155 29.7% 12 25% benign(0.131) deleterious(0) neutral(0.456) NULL TGS1 96764 genome.wustl.edu 37 8 56686232 56686232 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024831.6 +1 validated p.R19W 0.973 261 0.4% 235 18.3% 8 12.5% probably_damaging(0.959) deleterious(0) deleterious(0.847) NULL LYN 4067 genome.wustl.edu 37 8 56863239 56863239 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002350.2 +1 validated e5-1 1.000 352 0.3% 192 20.3% 4 100% - - - - LYN 4067 genome.wustl.edu 37 8 56882348 56882348 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002350.2 +1 validated p.A349D 1.000 327 0% 138 23.9% 40 17.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) CHCHD7 79145 genome.wustl.edu 37 8 57127226 57127226 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011668.1 +1 validated p.S43 0.998 494 0% 735 23.3% 40 0% - - - NULL PENK 5179 genome.wustl.edu 37 8 57353921 57353921 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135690.1 -1 validated p.A238 0.003 104 0% 195 23.6% 0 - - - - NULL PENK 5179 genome.wustl.edu 37 8 57354390 57354390 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135690.1 -1 validated p.S82I 0.000 141 0% 240 23.7% 0 - benign(0.001) tolerated(0.19) neutral(0.050) NULL IMPAD1 54928 genome.wustl.edu 37 8 57878871 57878871 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017813.3 -1 validated p.R229 0.041 159 0% 57 17.5% 28 17.8% - - - HMMPfam_Inositol_P,superfamily_SSF56655 UBXN2B 137886 genome.wustl.edu 37 8 59345764 59345764 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077619.1 +1 validated p.R129W 0.596 613 0% 444 22.7% 4 0% probably_damaging(0.968) deleterious(0.01) deleterious(0.816) NULL CYP7A1 1581 genome.wustl.edu 37 8 59410964 59410964 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000780.3 -1 reviewed p.G49S 1.000 193 0% 143 22.4% 0 - benign(0.263) tolerated(0.46) neutral(0.040) HMMPfam_p450,superfamily_Cytochrome_P450 TOX 9760 genome.wustl.edu 37 8 59750721 59750721 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014729.2 -1 reviewed p.G281 1.000 296 0% 87 14.9% 7 0% - - - HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box TOX 9760 genome.wustl.edu 37 8 59764097 59764097 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014729.2 -1 reviewed p.D227N 1.000 305 0% 61 24.6% 8 0% benign(0.108) deleterious(0) neutral(0.453) NULL RAB2A 5862 genome.wustl.edu 37 8 61471481 61471481 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002865.1 +1 provisional p.I39M 1.000 421 0% 324 11.7% 135 25.9% possibly_damaging(0.852) deleterious(0) deleterious(0.772) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases CHD7 55636 genome.wustl.edu 37 8 61654283 61654283 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017780.2 +1 reviewed p.L98I 0.999 138 0% 117 34.2% 0 - benign(0.158) tolerated(0.28) neutral(0.045) NULL CHD7 55636 genome.wustl.edu 37 8 61765088 61765088 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017780.2 +1 reviewed p.R1976C 1.000 223 0% 101 20.8% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CHD7 55636 genome.wustl.edu 37 8 61769324 61769324 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017780.2 +1 reviewed p.R2495S 1.000 252 0% 138 18.1% 8 37.5% possibly_damaging(0.813) tolerated(0.16) neutral(0.366) NULL CHD7 55636 genome.wustl.edu 37 8 61773592 61773592 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017780.2 +1 reviewed p.L2580 1.000 229 0% 177 15.8% 3 33.3% - - - HMMPfam_BRK,HMMSmart_SM00592 CHD7 55636 genome.wustl.edu 37 8 61777743 61777743 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017780.2 +1 reviewed p.L2749M 1.000 68 0% 54 18.5% 8 25% probably_damaging(0.962) deleterious(0.04) deleterious(0.754) NULL ASPH 444 genome.wustl.edu 37 8 62577965 62577965 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020164.4 -1 reviewed p.S175R 0.037 937 0% 405 11.4% 0 - possibly_damaging(0.913) deleterious(0.02) deleterious(0.748) HMMPfam_Asp-B-Hydro_N ENSG00000237810 0 genome.wustl.edu 37 8 63057061 63057061 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433538 -1 known p.E58 1.000 42 0% 67 14.9% 0 - - - - HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CYP7B1 9420 genome.wustl.edu 37 8 65527638 65527638 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004820.3 -1 reviewed p.G334 0.980 379 0% 177 22% 1 0% - - - HMMPfam_p450,superfamily_Cytochrome P450 CYP7B1 9420 genome.wustl.edu 37 8 65528478 65528478 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004820.3 -1 reviewed p.K207T 0.359 207 0% 97 22.7% 0 - benign(0.002) tolerated(0.33) neutral(0.024) superfamily_Cytochrome P450 PDE7A 5150 genome.wustl.edu 37 8 66637059 66637059 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002603.2 -1 validated p.G314S 1.000 283 0% 96 15.6% 7 28.5% benign(0.001) tolerated(0.09) neutral(0.296) HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604 VCPIP1 80124 genome.wustl.edu 37 8 67546968 67546968 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025054.4 -1 validated p.S1146F 1.000 173 0% 90 16.7% 7 0% possibly_damaging(0.449) deleterious(0) deleterious(0.592) NULL VCPIP1 80124 genome.wustl.edu 37 8 67576599 67576599 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025054.4 -1 validated p.S865 0.978 281 0% 298 19.8% 13 46.1% - - - NULL C8orf45 157777 genome.wustl.edu 37 8 67808441 67808441 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173518.4 +1 validated p.G439V 1.000 578 0% 235 22.1% 0 - possibly_damaging(0.931) deleterious(0.03) deleterious(0.742) HMMSmart_SM00350 C8orf45 157777 genome.wustl.edu 37 8 67813458 67813458 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173518.4 +1 validated p.K548N 1.000 175 0% 90 25.6% 1 100% benign(0.113) tolerated(0.14) neutral(0.259) HMMSmart_SM00350 C8orf45 157777 genome.wustl.edu 37 8 67817534 67817534 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173518.4 +1 validated p.A615S 1.000 298 0% 125 19.2% 0 - benign(0.079) deleterious(0.02) neutral(0.389) HMMPfam_MCM,HMMSmart_SM00350 CSPP1 79848 genome.wustl.edu 37 8 68074128 68074128 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077204.1 +1 validated p.S904I 1.000 633 0.2% 627 10.2% 7 28.5% possibly_damaging(0.885) deleterious(0.04) deleterious(0.695) NULL CPA6 57094 genome.wustl.edu 37 8 68340347 68340347 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020361.4 -1 validated p.A354D 1.000 261 0% 124 22.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases PREX2 80243 genome.wustl.edu 37 8 69009279 69009279 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024870.2 +1 validated p.A799V 1.000 205 0% 60 28.3% 10 20% benign(0.001) tolerated(0.07) neutral(0.319) NULL SULF1 23213 genome.wustl.edu 37 8 70515886 70515886 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128204.1 +1 validated p.E414D 1.000 321 0% 140 27.1% 13 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_Alkaline_phosphatase_core SULF1 23213 genome.wustl.edu 37 8 70540406 70540406 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128204.1 +1 validated p.S681R 1.000 160 0% 229 24.9% 11 0% benign(0.009) deleterious(0.01) neutral(0.406) superfamily_Alkaline_phosphatase_core SLCO5A1 81796 genome.wustl.edu 37 8 70744145 70744145 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030958.2 -1 reviewed p.S255L 0.991 148 0% 160 22.5% 1 100% possibly_damaging(0.895) tolerated(0.14) deleterious(0.603) HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter PRDM14 63978 genome.wustl.edu 37 8 70971040 70971040 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024504.2 -1 validated p.K407N 0.980 363 0% 225 20% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2 XKR9 389668 genome.wustl.edu 37 8 71646414 71646414 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011720.1 +1 provisional p.V293I 0.010 393 0% 229 18.8% 0 - benign(0.051) tolerated(0.61) neutral(0.007) HMMPfam_XK-related XKR9 389668 genome.wustl.edu 37 8 71646502 71646502 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011720.1 +1 provisional p.S322I 0.000 363 0% 187 24.6% 0 - benign(0.094) tolerated(0.27) neutral(0.041) HMMPfam_XK-related EYA1 2138 genome.wustl.edu 37 8 72129070 72129070 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000503.4 -1 reviewed p.T406I 1.000 398 0% 92 18.5% 0 - benign(0.108) deleterious(0) neutral(0.453) HMMPfam_Hydrolase LOC392232 392232 genome.wustl.edu 37 8 73142409 73142409 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_037363.2 -1 model NULL 0.752 254 0% 139 14.4% 0 - - - - - LOC392232 392232 genome.wustl.edu 37 8 73157302 73157302 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_037363.2 -1 model NULL 0.003 93 0% 62 14.5% 0 - - - - - RDH10 157506 genome.wustl.edu 37 8 74231399 74231399 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172037.3 +1 validated p.S198 0.996 507 0% 192 14.1% 38 57.8% - - - HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains UBE2W 55284 genome.wustl.edu 37 8 74706344 74706344 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001481.1 -1 validated p.T161N 1.000 404 0% 129 20.2% 5 40% benign(0.004) deleterious(0.01) neutral(0.406) HMMSmart_SM00212 JPH1 56704 genome.wustl.edu 37 8 75233339 75233339 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020647.2 -1 reviewed p.G62S 1.000 70 0% 57 33.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain GDAP1 54332 genome.wustl.edu 37 8 75263540 75263540 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018972.2 +1 reviewed p.K50T 1.000 476 0% 422 22% 0 - probably_damaging(0.957) tolerated(0.54) neutral(0.408) HMMPfam_GST_N,superfamily_Thioredoxin-like GDAP1 54332 genome.wustl.edu 37 8 75275246 75275246 + Nonsense_Mutation SNP C C T rs121908113 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018972.2 +1 reviewed p.Q218* 1.000 288 0% 283 23% 1 0% - - - HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain PI15 51050 genome.wustl.edu 37 8 75757649 75757649 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015886.3 +1 reviewed p.C186 1.000 373 0% 128 19.5% 2 0% - - - HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular HNF4G 3174 genome.wustl.edu 37 8 76470813 76470813 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004133.4 +1 validated p.R255H 0.999 259 0% 79 21.5% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor ZFHX4 79776 genome.wustl.edu 37 8 77617432 77617432 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024721.4 +1 validated p.E370A 1.000 312 0% 245 17.6% 0 - benign(0.076) - - NULL ZFHX4 79776 genome.wustl.edu 37 8 77620289 77620289 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000458716 +1 known p.S1007 0.986 89 0% 69 13% 0 - - - - NULL ZFHX4 79776 genome.wustl.edu 37 8 77764027 77764027 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024721.4 +1 validated p.A1579T 1.000 114 0% 62 16.1% 0 - benign(0.135) - - HMMSmart_SM00451 ZFHX4 79776 genome.wustl.edu 37 8 77767241 77767241 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024721.4 +1 validated p.R2650H 1.000 150 0% 67 23.9% 0 - probably_damaging(0.999) - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZFHX4 79776 genome.wustl.edu 37 8 77768344 77768344 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024721.4 +1 validated p.E3018* 1.000 98 0% 26 30.8% 0 - - - - NULL ZFHX4 79776 genome.wustl.edu 37 8 77776174 77776174 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024721.4 +1 validated p.C3363* 1.000 172 0% 65 20% 0 - - - - HMMSmart_SM00355 PEX2 5828 genome.wustl.edu 37 8 77896103 77896103 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000318.2 -1 reviewed p.I104 0.057 132 0% 87 28.7% 31 41.9% - - - HMMPfam_Pex2_Pex12 PKIA 5569 genome.wustl.edu 37 8 79510711 79510711 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006823.2 +1 reviewed p.A31V 1.000 295 0% 53 17% 1 0% benign(0.005) tolerated(0.06) neutral(0.323) HMMPfam_PKI ZC2HC1A 51101 genome.wustl.edu 37 8 79629651 79629651 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016010.2 +1 validated p.H301Y 1.000 355 0% 201 18.9% 10 20% benign(0.084) deleterious(0.01) neutral(0.412) NULL SNX16 64089 genome.wustl.edu 37 8 82752169 82752169 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022133.3 -1 reviewed p.S18I 0.996 216 0% 277 24.9% 2 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL RALYL 138046 genome.wustl.edu 37 8 85799838 85799838 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100391.1 +1 validated e8-1 1.000 268 0% 108 11.1% 0 - - - - - LRRCC1 85444 genome.wustl.edu 37 8 86035667 86035667 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033402.4 +1 validated p.N317S 0.003 97 0% 103 25.2% 3 33.3% probably_damaging(0.987) tolerated(0.41) neutral(0.452) NULL LRRCC1 85444 genome.wustl.edu 37 8 86042232 86042232 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033402.4 +1 validated p.R569* 1.000 210 0% 185 22.7% 3 0% - - - NULL LRRCC1 85444 genome.wustl.edu 37 8 86049702 86049702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033402.4 +1 validated p.S778Y 0.024 186 0% 103 20.4% 8 25% possibly_damaging(0.491) deleterious(0.03) deleterious(0.528) NULL CA13 377677 genome.wustl.edu 37 8 86178874 86178874 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198584.2 +1 validated p.S131N 1.000 517 0.2% 310 15.8% 1 0% benign(0.126) tolerated(0.19) neutral(0.060) HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd ATP6V0D2 245972 genome.wustl.edu 37 8 87125998 87125998 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152565.1 +1 validated p.P64H 1.000 366 0.3% 93 17.2% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d FAM82B 51115 genome.wustl.edu 37 8 87500781 87500781 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016033.2 -1 validated p.S112I 1.000 464 0% 460 23% 47 0% probably_damaging(0.953) deleterious(0.04) deleterious(0.746) superfamily_Prenyl_trans CNGB3 54714 genome.wustl.edu 37 8 87588334 87588334 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019098.4 -1 reviewed p.E710* 0.002 332 0.9% 142 19% 0 - - - - NULL CNBD1 168975 genome.wustl.edu 37 8 87951977 87951977 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173538.2 +1 provisional p.K142N 1.000 129 0% 34 17.6% 0 - probably_damaging(0.98) deleterious(0.02) deleterious(0.807) NULL CNBD1 168975 genome.wustl.edu 37 8 88365863 88365863 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173538.2 +1 provisional e10-1 1.000 129 0% 49 24.5% 0 - - - - - CNBD1 168975 genome.wustl.edu 37 8 88365987 88365987 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173538.2 +1 provisional p.A426S 0.910 245 0% 84 19% 0 - possibly_damaging(0.945) tolerated(0.14) deleterious(0.639) HMMPfam_cNMP_binding,superfamily_cNMP_binding DCAF4L2 138009 genome.wustl.edu 37 8 88885325 88885325 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152418.3 -1 validated p.G292V 1.000 196 0% 113 20.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 MMP16 4325 genome.wustl.edu 37 8 89081701 89081701 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022564.3 -1 reviewed p.Y424* 0.000 440 0.2% 109 12.8% 0 - - - - NULL MMP16 4325 genome.wustl.edu 37 8 89198754 89198754 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005941.4 -1 reviewed p.R119* 1.000 394 0.3% 184 18.5% 1 0% - - - NULL MMP16 4325 genome.wustl.edu 37 8 89198763 89198763 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005941.4 -1 reviewed p.R116C 0.999 368 0% 172 20.9% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RIPK2 8767 genome.wustl.edu 37 8 90775161 90775161 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003821.5 +1 reviewed p.I93T 1.000 355 0% 355 16.6% 39 48.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase OSGIN2 734 genome.wustl.edu 37 8 90937282 90937282 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126111.1 +1 validated p.K391I 1.000 208 0% 66 18.2% 37 45.9% probably_damaging(0.953) tolerated(0.08) deleterious(0.697) superfamily_FAD/NAD(P)-binding domain NECAB1 64168 genome.wustl.edu 37 8 91893337 91893337 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022351.4 +1 validated p.K112N 1.000 177 0% 184 17.9% 0 - probably_damaging(0.999) tolerated(0.17) deleterious(0.549) superfamily_EF-hand TMEM55A 55529 genome.wustl.edu 37 8 92033485 92033485 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018710.2 -1 validated p.T85M 1.000 161 0.6% 67 19.4% 7 28.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Tmemb_55A SLC26A7 115111 genome.wustl.edu 37 8 92364090 92364090 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134266.1 +1 reviewed p.G398V 1.000 611 0% 172 18% 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_Sulfate_transp SLC26A7 115111 genome.wustl.edu 37 8 92378897 92378897 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134266.1 +1 reviewed p.M526I 0.988 170 0% 92 14.1% 0 - benign(0) tolerated(0.67) neutral(0.003) HMMPfam_STAS,superfamily_STAS RUNX1T1 862 genome.wustl.edu 37 8 92999161 92999161 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175634.1 -1 reviewed p.R344I 1.000 590 0.2% 237 24.9% 1 0% possibly_damaging(0.609) tolerated(0.1) deleterious(0.497) HMMPfam_NHR2 RBM12B 389677 genome.wustl.edu 37 8 94747537 94747537 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203390.2 -1 validated p.A368T 1.000 192 0% 230 24.8% 6 33.3% benign(0.055) tolerated(0.19) neutral(0.053) NULL TMEM67 91147 genome.wustl.edu 37 8 94793161 94793161 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153704.5 +1 reviewed p.L310P 1.000 267 0% 139 16.5% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Meckelin PDP1 54704 genome.wustl.edu 37 8 94934569 94934569 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018444.3 +1 reviewed p.Y94 1.000 437 0% 373 20.1% 3 33.3% - - - superfamily_Protein serine/threonine phosphatase 2C catalytic domain CDH17 1015 genome.wustl.edu 37 8 95164126 95164126 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144663.1 -1 reviewed p.T589N 0.996 286 0% 70 24.3% 0 - benign(0.322) tolerated(0.44) neutral(0.114) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like GEM 2669 genome.wustl.edu 37 8 95262626 95262626 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005261.3 -1 reviewed p.R268H 1.000 140 0% 88 26.1% 19 5.2% possibly_damaging(0.937) deleterious(0) deleterious(0.828) NULL GEM 2669 genome.wustl.edu 37 8 95264271 95264271 + Missense_Mutation SNP G G A rs187593880 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005261.3 -1 reviewed p.R197W 1.000 151 0% 90 20% 14 7.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases RAD54B 25788 genome.wustl.edu 37 8 95390843 95390843 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012415.2 -1 reviewed p.R756I 1.000 384 0.3% 361 21.1% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 RAD54B 25788 genome.wustl.edu 37 8 95423377 95423377 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012415.2 -1 reviewed p.K157N 1.000 429 0% 126 19% 1 0% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) superfamily_SSF52540 KIAA1429 25962 genome.wustl.edu 37 8 95500995 95500995 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000442835 -1 known p.E1756* 0.998 327 0% 171 21.1% 78 46.1% possibly_damaging(0.811) tolerated(0.28) neutral(0.337) NULL ESRP1 54845 genome.wustl.edu 37 8 95658438 95658438 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017697.3 +1 validated p.R140* 1.000 466 0% 385 21.6% 7 42.8% - - - NULL ESRP1 54845 genome.wustl.edu 37 8 95677286 95677286 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017697.3 +1 validated p.E296V 1.000 426 0% 137 22.6% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00360,superfamily_RNA-binding domain RBD ESRP1 54845 genome.wustl.edu 37 8 95680439 95680439 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017697.3 +1 validated p.Y398* 1.000 199 0% 65 29.2% 2 0% - - - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD ESRP1 54845 genome.wustl.edu 37 8 95686698 95686698 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017697.3 +1 validated p.R539* 1.000 283 0% 106 18.9% 10 60% - - - NULL ESRP1 54845 genome.wustl.edu 37 8 95690544 95690544 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017697.3 +1 validated p.A589T 0.911 426 0% 120 25% 8 50% benign(0.009) tolerated(0.34) neutral(0.024) NULL INTS8 55656 genome.wustl.edu 37 8 95850847 95850847 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017864.2 +1 provisional e8+1 1.000 339 0% 172 15.7% 0 - - - - - GDF6 392255 genome.wustl.edu 37 8 97172538 97172538 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001557.2 -1 reviewed p.T128I 1.000 125 0% 154 23.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_TGFb_propeptide GDF6 392255 genome.wustl.edu 37 8 97172711 97172711 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001557.2 -1 reviewed p.R70 0.016 15 0.000 8 0.500 0 - - - - NULL PTDSS1 9791 genome.wustl.edu 37 8 97274404 97274404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014754.1 +1 provisional p.L46F 1.000 92 0% 119 22.7% 48 45.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TSPYL5 85453 genome.wustl.edu 37 8 98289417 98289417 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033512.2 -1 validated p.A219V 0.974 125 0% 188 23.4% 0 - probably_damaging(0.979) deleterious(0) deleterious(0.867) HMMPfam_NAP MTDH 92140 genome.wustl.edu 37 8 98703282 98703282 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178812.3 +1 validated p.N305S 0.999 331 0% 116 24.1% 19 31.5% benign(0.224) tolerated(0.4) neutral(0.038) NULL LAPTM4B 55353 genome.wustl.edu 37 8 98828401 98828401 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018407.4 +1 validated p.R225Q 0.987 447 0% 213 21.6% 507 45.9% benign(0.396) tolerated(0.55) neutral(0.134) HMMPfam_Mtp MATN2 4147 genome.wustl.edu 37 8 99006816 99006816 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002380.3 +1 reviewed p.K397T 0.998 315 0% 114 14.9% 10 60% benign(0.229) tolerated(0.11) neutral(0.295) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin POP1 10940 genome.wustl.edu 37 8 99146260 99146260 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015029.2 +1 reviewed p.D273 0.973 572 0.2% 272 20.2% 1 0% - - - NULL KCNS2 3788 genome.wustl.edu 37 8 99440687 99440687 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020697.2 +1 provisional p.K160 1.000 72 0% 123 17.1% 0 - - - - NULL STK3 6788 genome.wustl.edu 37 8 99468164 99468164 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006281.2 -1 validated p.R461Q 1.000 591 0% 192 21.4% 11 27.2% benign(0.026) tolerated(0.87) neutral(0.002) NULL VPS13B 157680 genome.wustl.edu 37 8 100133593 100133593 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017890.3 +1 reviewed p.H376Y 0.904 333 0% 137 19.7% 1 100% benign(0) tolerated(0.06) neutral(0.323) NULL VPS13B 157680 genome.wustl.edu 37 8 100147911 100147911 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017890.3 +1 reviewed p.E505* 1.000 508 0% 241 20.3% 1 0% - - - NULL VPS13B 157680 genome.wustl.edu 37 8 100712157 100712157 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017890.3 +1 reviewed p.P2176S 0.987 131 0% 85 20% 0 - benign(0.013) tolerated(0.41) neutral(0.015) NULL COX6C 1345 genome.wustl.edu 37 8 100904136 100904136 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004374.2 -1 reviewed p.K38N 1.000 126 0% 155 13.5% 773 13.4% possibly_damaging(0.849) deleterious(0.03) deleterious(0.691) HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc COX6C 1345 genome.wustl.edu 37 8 100904212 100904212 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004374.2 -1 reviewed p.G13D 1.000 119 0% 144 33.3% 773 35.1% benign(0.336) deleterious(0.04) neutral(0.455) HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc RGS22 26166 genome.wustl.edu 37 8 101075757 101075757 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015668.3 -1 validated p.K413N 0.991 484 0% 335 11% 0 - possibly_damaging(0.909) deleterious(0.02) deleterious(0.745) superfamily_Regulator of G-protein signaling RGS SPAG1 6674 genome.wustl.edu 37 8 101174629 101174629 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003114.3 +1 reviewed p.K41E 1.000 103 0% 154 26.6% 2 50% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL RNF19A 25897 genome.wustl.edu 37 8 101276385 101276385 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015435.3 -1 reviewed p.V449I 1.000 370 0% 136 27.2% 21 33.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL RNF19A 25897 genome.wustl.edu 37 8 101287351 101287351 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015435.3 -1 reviewed p.K238T 1.000 145 0% 55 27.3% 8 37.5% probably_damaging(0.998) deleterious(0.05) deleterious(0.820) HMMPfam_IBR,HMMSmart_SM00647,superfamily_RING/U-box SNX31 169166 genome.wustl.edu 37 8 101648223 101648223 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152628.3 -1 validated p.G53V 0.996 199 0% 142 23.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain PABPC1 26986 genome.wustl.edu 37 8 101717249 101717249 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002568.3 -1 validated p.P575T 1.000 372 0% 179 19.6% 1342 34.5% benign(0.001) tolerated(0.06) neutral(0.323) HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain GRHL2 79977 genome.wustl.edu 37 8 102570909 102570909 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024915.3 +1 reviewed p.R183* 0.983 111 0% 61 26.2% 2 50% - - - NULL UBR5 51366 genome.wustl.edu 37 8 103283451 103283451 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015902.4 -1 reviewed p.N2332 1.000 676 0% 340 14.1% 18 22.2% - - - superfamily_HECT UBR5 51366 genome.wustl.edu 37 8 103284937 103284937 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015902.4 -1 reviewed p.R2265* 0.993 249 0.8% 78 24.4% 29 27.5% - - - superfamily_HECT UBR5 51366 genome.wustl.edu 37 8 103307432 103307432 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015902.4 -1 reviewed p.P1353L 1.000 320 0% 112 15.2% 3 33.3% possibly_damaging(0.846) tolerated(0.41) neutral(0.340) NULL UBR5 51366 genome.wustl.edu 37 8 103307735 103307735 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015902.4 -1 reviewed p.V1280I 1.000 258 0% 75 17.3% 2 50% possibly_damaging(0.888) tolerated(0.85) neutral(0.348) NULL AZIN1 51582 genome.wustl.edu 37 8 103855796 103855796 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015878.4 -1 reviewed p.V29I 1.000 414 0% 175 18.3% 31 25.8% benign(0) tolerated(1) - NULL BAALC 79870 genome.wustl.edu 37 8 104240271 104240271 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024812.2 +1 reviewed p.D128Y 0.016 315 0% 109 24.8% 1 0% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) NULL RIMS2 9699 genome.wustl.edu 37 8 105261777 105261777 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100117.1 +1 validated p.R1218C 1.000 201 0% 68 16.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) TM7SF4 81501 genome.wustl.edu 37 8 105360963 105360963 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030788.2 +1 reviewed p.A61 0.000 245 0% 99 22.2% 1 0% - - - NULL TM7SF4 81501 genome.wustl.edu 37 8 105361297 105361297 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030788.2 +1 reviewed p.V173F 0.360 96 0% 28 21.4% 0 - probably_damaging(0.977) deleterious(0) deleterious(0.863) NULL DPYS 1807 genome.wustl.edu 37 8 105405101 105405101 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001385.2 -1 reviewed p.V452L 0.119 220 0% 61 24.6% 0 - benign(0) tolerated(0.2) neutral(0.049) superfamily_Metalo_hydrolase ZFPM2 23414 genome.wustl.edu 37 8 106814838 106814838 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012082.3 +1 reviewed p.T843M 0.989 181 0% 60 21.7% 1 0% probably_damaging(0.964) deleterious(0.02) deleterious(0.789) NULL ANGPT1 284 genome.wustl.edu 37 8 108306191 108306191 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001146.3 -1 reviewed p.F337L 1.000 427 0% 194 23.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like TRHR 7201 genome.wustl.edu 37 8 110131531 110131531 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003301.4 +1 reviewed p.Y348 1.000 205 0% 34 14.7% 0 - - - - superfamily_SSF81321 NUDCD1 84955 genome.wustl.edu 37 8 110257597 110257597 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032869.3 -1 validated p.S471 0.003 439 0% 122 22.1% 61 36% - - - NULL PKHD1L1 93035 genome.wustl.edu 37 8 110425754 110425754 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177531.4 +1 validated p.Y780 0.000 410 0% 187 13.9% 0 - - - - NULL PKHD1L1 93035 genome.wustl.edu 37 8 110468568 110468568 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177531.4 +1 validated p.A2318S 1.000 300 0% 149 22.8% 0 - benign(0.001) tolerated(0.37) neutral(0.019) NULL PKHD1L1 93035 genome.wustl.edu 37 8 110471972 110471972 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177531.4 +1 validated p.V2385F 1.000 207 1% 62 11.3% 0 - probably_damaging(0.982) deleterious(0.01) deleterious(0.832) NULL PKHD1L1 93035 genome.wustl.edu 37 8 110474061 110474061 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177531.4 +1 validated p.Q2436R 1.000 318 0% 150 18.7% 0 - probably_damaging(0.999) tolerated(0.13) deleterious(0.743) NULL PKHD1L1 93035 genome.wustl.edu 37 8 110488792 110488792 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177531.4 +1 validated p.N2938T 0.999 200 0% 64 25% 0 - benign(0.005) tolerated(0.69) neutral(0.002) NULL PKHD1L1 93035 genome.wustl.edu 37 8 110493698 110493698 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177531.4 +1 validated p.F3122V 1.000 328 0.3% 138 22.5% 0 - possibly_damaging(0.773) deleterious(0.03) deleterious(0.652) superfamily_Pectin lyase-like,HMMPfam_G8 EBAG9 9166 genome.wustl.edu 37 8 110563073 110563073 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004215.3 +1 reviewed p.R7Q 1.000 480 0% 417 13.7% 25 20% probably_damaging(0.985) tolerated(0.33) neutral(0.456) NULL SYBU 55638 genome.wustl.edu 37 8 110587864 110587864 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099744.1 -1 validated p.T421 0.000 320 0% 218 23.9% 10 50% - - - NULL CSMD3 114788 genome.wustl.edu 37 8 113275951 113275951 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.S3260Y 1.000 257 0% 90 22.2% 0 - probably_damaging(0.993) tolerated(0.52) neutral(0.459) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD3 114788 genome.wustl.edu 37 8 113314089 113314089 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.L2791 1.000 329 0% 202 12.4% 0 - - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD3 114788 genome.wustl.edu 37 8 113326673 113326673 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.L2512F 1.000 291 0% 97 17.5% 0 - probably_damaging(0.999) tolerated(0.13) deleterious(0.743) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD3 114788 genome.wustl.edu 37 8 113358419 113358419 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.D2117Y 1.000 306 0% 251 15.9% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD3 114788 genome.wustl.edu 37 8 113418831 113418831 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.H1911Y 1.000 209 0% 76 23.7% 0 - probably_damaging(0.959) tolerated(0.06) deleterious(0.725) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD3 114788 genome.wustl.edu 37 8 113504763 113504763 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.D1745Y 1.000 327 0% 95 26.3% 0 - probably_damaging(0.982) deleterious(0.01) deleterious(0.832) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD3 114788 genome.wustl.edu 37 8 114449071 114449071 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198123.1 -1 validated p.R5C 1.000 180 0% 208 17.3% 0 - unknown(0) deleterious(0) - NULL TRPS1 7227 genome.wustl.edu 37 8 116426929 116426929 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014112.2 -1 reviewed p.S1069 0.937 559 0% 246 17.5% 5 0% - - - NULL TRPS1 7227 genome.wustl.edu 37 8 116430564 116430564 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014112.2 -1 reviewed p.L939 0.984 197 0% 91 16.5% 0 - - - - HMMPfam_GATA,HMMSmart_ZnF_GATA,superfamily_SSF57716 TRPS1 7227 genome.wustl.edu 37 8 116632174 116632174 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014112.2 -1 reviewed p.S51A 1.000 297 0% 140 18.6% 1 0% possibly_damaging(0.937) deleterious(0) deleterious(0.828) NULL RAD21 5885 genome.wustl.edu 37 8 117862951 117862951 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006265.2 -1 reviewed p.P509H 1.000 650 0.2% 278 22.3% 81 46.9% benign(0.09) deleterious(0.04) neutral(0.355) NULL COLEC10 10584 genome.wustl.edu 37 8 120103460 120103460 + Splice_Site SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006438.3 +1 reviewed e3+1 1.000 331 0% 124 20.2% 0 - - - - - NOV 4856 genome.wustl.edu 37 8 120435268 120435268 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002514.3 +1 reviewed p.P324S 0.502 67 0% 53 13.2% 4 75% probably_damaging(1) tolerated(0.78) deleterious(0.501) HMMSmart_CT,PatternScan_CTCK_1,HMMPfam_Cys_knot ENPP2 5168 genome.wustl.edu 37 8 120602849 120602849 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006209.3 -1 reviewed p.D420G 0.998 455 0% 141 19.1% 14 0% benign(0.187) tolerated(0.07) neutral(0.337) HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like ENPP2 5168 genome.wustl.edu 37 8 120628549 120628549 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006209.3 -1 reviewed p.R245* 1.000 325 0% 110 30% 8 0% - - - HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like TAF2 6873 genome.wustl.edu 37 8 120744360 120744360 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003184.3 -1 reviewed p.T1135I 0.001 773 0.1% 205 19.5% 34 23.5% benign(0.261) deleterious(0.01) neutral(0.433) NULL TAF2 6873 genome.wustl.edu 37 8 120754781 120754781 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003184.3 -1 reviewed p.K1110N 0.968 192 0% 73 24.7% 20 50% possibly_damaging(0.856) deleterious(0) deleterious(0.775) NULL DSCC1 79075 genome.wustl.edu 37 8 120850576 120850576 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024094.2 -1 validated p.E332D 0.973 302 0% 227 11% 18 27.7% possibly_damaging(0.896) tolerated(0.11) deleterious(0.625) HMMPfam_DUF2036 COL14A1 7373 genome.wustl.edu 37 8 121180405 121180405 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021110.1 +1 validated p.D119Y 1.000 150 0% 38 21.1% 2 50% probably_damaging(0.964) deleterious(0.02) deleterious(0.789) NULL COL14A1 7373 genome.wustl.edu 37 8 121209180 121209180 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021110.1 +1 validated p.R196Q 0.999 256 0.4% 246 20.3% 0 - benign(0.023) deleterious(0.01) neutral(0.407) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like HAS2 3037 genome.wustl.edu 37 8 122641056 122641056 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005328.2 -1 reviewed p.V175 0.998 398 0% 195 22.1% 1 0% - - - superfamily_SSF53448 ZHX2 22882 genome.wustl.edu 37 8 123963874 123963874 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014943.3 +1 reviewed p.V42M 0.000 174 0% 108 18.5% 8 37.5% benign(0.03) deleterious(0.02) neutral(0.385) NULL ZHX2 22882 genome.wustl.edu 37 8 123964116 123964116 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014943.3 +1 reviewed p.Y122 0.990 172 0.6% 69 14.5% 6 66.6% - - - HMMSmart_ZnF_C2H2 ZHX2 22882 genome.wustl.edu 37 8 123964690 123964690 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014943.3 +1 reviewed p.R314C 1.000 107 0% 93 25.8% 9 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_HOX,superfamily_Homeodomain_like ZHX2 22882 genome.wustl.edu 37 8 123964850 123964850 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014943.3 +1 reviewed p.P367L 0.999 51 0% 38 23.7% 10 10% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL DERL1 79139 genome.wustl.edu 37 8 124027714 124027714 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024295.4 -1 validated p.G243 0.996 61 0% 29 27.6% 84 32.1% - - - NULL DERL1 79139 genome.wustl.edu 37 8 124031533 124031533 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024295.4 -1 validated p.E173D 1.000 312 0% 136 19.1% 82 34.1% benign(0.229) tolerated(0.11) neutral(0.295) HMMPfam_DER1 DERL1 79139 genome.wustl.edu 37 8 124034935 124034935 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024295.4 -1 validated p.T148P 1.000 349 0% 112 33% 114 38.5% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_DER1 WDR67 93594 genome.wustl.edu 37 8 124146433 124146433 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145647.3 +1 validated p.R829K 0.928 265 0% 89 21.3% 5 60% possibly_damaging(0.833) tolerated(0.44) neutral(0.330) NULL C8orf76 84933 genome.wustl.edu 37 8 124243808 124243808 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032847.1 -1 predicted p.A183T 0.001 272 0% 240 20.4% 36 36.1% benign(0) tolerated(1) - NULL ZHX1 11244 genome.wustl.edu 37 8 124267114 124267114 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017926.1 -1 reviewed p.G358E 1.000 369 0% 183 24% 10 20% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL WDYHV1 55093 genome.wustl.edu 37 8 124442250 124442250 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018024.1 +1 provisional p.P71S 1.000 346 0% 193 13% 10 20% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_WDYHV FBXO32 114907 genome.wustl.edu 37 8 124525496 124525496 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058229.2 -1 reviewed p.Y198C 0.998 330 0% 157 25.5% 11 45.4% possibly_damaging(0.747) tolerated(0.19) neutral(0.324) NULL ANXA13 312 genome.wustl.edu 37 8 124693491 124693491 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003954.1 -1 reviewed p.L355I 1.000 221 0.5% 71 22.5% 1 0% benign(0.346) tolerated(0.57) neutral(0.116) superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335 FAM91A1 157769 genome.wustl.edu 37 8 124796740 124796740 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144963.2 +1 validated p.R245Q 1.000 359 0% 236 19.5% 7 57.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FER1L6 654463 genome.wustl.edu 37 8 124992805 124992805 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039112.2 +1 validated p.G388 1.000 354 0% 129 22.5% 0 - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) FER1L6 654463 genome.wustl.edu 37 8 125074241 125074241 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039112.2 +1 validated p.I1099T 0.000 110 0% 44 18.2% 0 - benign(0) tolerated(0.89) - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) TRMT12 55039 genome.wustl.edu 37 8 125463466 125463466 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017956.3 +1 validated p.G100S 0.002 50 0% 41 26.8% 10 40% benign(0) tolerated(0.78) neutral(0.001) NULL TRMT12 55039 genome.wustl.edu 37 8 125463744 125463744 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017956.3 +1 validated p.L192 1.000 200 0% 82 18.3% 16 25% - - - HMMPfam_Met_10,superfamily_SSF53335 TRMT12 55039 genome.wustl.edu 37 8 125464157 125464157 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017956.3 +1 validated p.G330E 1.000 143 0% 66 18.2% 13 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF53335 RNF139 11236 genome.wustl.edu 37 8 125499280 125499280 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007218.3 +1 reviewed p.V464I 1.000 230 0% 151 21.2% 26 30.7% benign(0.416) tolerated(0.69) neutral(0.137) NULL TATDN1 83940 genome.wustl.edu 37 8 125528192 125528192 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032026.3 -1 validated p.K94N 0.400 321 0.3% 180 24.4% 52 55.7% benign(0) tolerated(0.57) neutral(0.006) HMMPfam_TatD_DNase,superfamily_Metallo-dependent hydrolases SQLE 6713 genome.wustl.edu 37 8 126011707 126011707 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003129.3 +1 reviewed p.I21T 0.371 226 0% 323 11.5% 7 0% benign(0.002) deleterious(0.01) neutral(0.406) NULL SQLE 6713 genome.wustl.edu 37 8 126021539 126021539 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003129.3 +1 reviewed p.R354 0.993 128 0% 105 21.9% 10 70% - - - HMMPfam_SE,superfamily_SSF51905 KIAA0196 9897 genome.wustl.edu 37 8 126094651 126094651 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014846.3 -1 reviewed p.L131I 1.000 255 0% 193 18.1% 9 33.3% possibly_damaging(0.945) tolerated(0.54) neutral(0.397) HMMPfam_Strumpellin TRIB1 10221 genome.wustl.edu 37 8 126445609 126445609 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025195.2 +1 validated p.L137 1.000 172 0% 218 22.5% 14 35.7% - - - HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) POU5F1B 5462 genome.wustl.edu 37 8 128428978 128428978 + Silent SNP C C T rs28409416 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000391675 +1 known p.S289 0.743 38 0% 47 21.3% 8 0% - - - HMMSmart_HOX FAM49B 51571 genome.wustl.edu 37 8 130867873 130867873 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016623.3 -1 predicted p.R141Q 1.000 242 0.4% 121 26.4% 50 34% possibly_damaging(0.864) tolerated(0.34) neutral(0.358) HMMPfam_DUF1394 ASAP1 50807 genome.wustl.edu 37 8 131200363 131200363 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018482.2 -1 validated p.V158I 1.000 301 0% 60 20% 3 0% benign(0.176) tolerated(0.27) neutral(0.050) NULL ADCY8 114 genome.wustl.edu 37 8 132052013 132052013 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001115.2 -1 reviewed p.D189 1.000 132 0% 181 29.8% 0 - - - - NULL KCNQ3 3786 genome.wustl.edu 37 8 133152366 133152366 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004519.2 -1 reviewed p.E509K 0.998 83 0% 52 19.2% 0 - probably_damaging(0.978) deleterious(0.04) deleterious(0.769) HMMPfam_KCNQ_channel KCNQ3 3786 genome.wustl.edu 37 8 133153555 133153555 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004519.2 -1 reviewed p.R429Q 1.000 323 0% 169 22.5% 0 - probably_damaging(0.994) tolerated(0.07) deleterious(0.771) NULL LRRC6 23639 genome.wustl.edu 37 8 133595950 133595950 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012472.3 -1 provisional p.T406I 0.000 461 0% 79 17.7% 13 46.1% benign(0.005) tolerated(0.38) neutral(0.018) NULL PHF20L1 51105 genome.wustl.edu 37 8 133827027 133827027 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016018.4 +1 validated p.S359Y 1.000 277 0% 67 25.4% 8 12.5% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL TG 7038 genome.wustl.edu 37 8 133895149 133895149 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003235.4 +1 reviewed p.A327V 0.007 69 0% 40 12.5% 0 - possibly_damaging(0.521) deleterious(0) deleterious(0.620) HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain WISP1 8840 genome.wustl.edu 37 8 134232915 134232915 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003882.2 +1 reviewed p.I147 0.990 48 0% 45 24.4% 0 - - - - HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1 NDRG1 10397 genome.wustl.edu 37 8 134276883 134276883 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135242.1 -1 reviewed p.E38K 1.000 158 0.6% 102 18.6% 30 36.6% possibly_damaging(0.658) deleterious(0.01) deleterious(0.638) HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases ZFAT 57623 genome.wustl.edu 37 8 135490794 135490794 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020863.3 -1 reviewed p.I1221 1.000 34 0% 22 18.2% 2 0% - - - NULL ZFAT 57623 genome.wustl.edu 37 8 135614009 135614009 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020863.3 -1 reviewed p.Q651H 0.032 105 0% 80 28.7% 3 33.3% benign(0.075) deleterious(0.05) neutral(0.350) NULL ZFAT 57623 genome.wustl.edu 37 8 135614561 135614561 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020863.3 -1 reviewed p.F467 0.879 29 0% 35 22.9% 4 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FAM135B 51059 genome.wustl.edu 37 8 139155274 139155274 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015912.3 -1 validated p.L1207I 1.000 368 0% 182 19.8% 0 - benign(0.307) tolerated(0.11) neutral(0.367) HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases FAM135B 51059 genome.wustl.edu 37 8 139164531 139164531 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015912.3 -1 validated p.E729D 0.982 62 0% 47 29.8% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL FAM135B 51059 genome.wustl.edu 37 8 139209863 139209863 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015912.3 -1 validated p.W240L 1.000 151 0% 56 25% 0 - probably_damaging(0.998) tolerated(0.23) deleterious(0.516) NULL COL22A1 169044 genome.wustl.edu 37 8 139727960 139727960 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152888.1 -1 validated p.G828* 0.998 234 0.4% 118 15.3% 0 - - - - HMMPfam_Collagen COL22A1 169044 genome.wustl.edu 37 8 139833603 139833603 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152888.1 -1 validated p.G341S 1.000 175 0% 55 23.6% 0 - unknown(0) deleterious(0) - HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases COL22A1 169044 genome.wustl.edu 37 8 139838991 139838991 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152888.1 -1 validated p.Y293 0.973 129 0% 39 20.5% 1 0% - - - HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases KCNK9 51305 genome.wustl.edu 37 8 140631201 140631201 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016601.2 -1 reviewed p.R142H 1.000 118 0% 101 22.8% 0 - possibly_damaging(0.818) tolerated(0.11) deleterious(0.581) superfamily_SSF81324 LOC100288108 100288108 genome.wustl.edu 37 8 140715017 140715017 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342878.1 +1 model p.A387T 0.998 65 0% 100 23% 0 - - - - NULL TRAPPC9 83696 genome.wustl.edu 37 8 140743388 140743388 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031466.5 -1 reviewed p.H1219 0.983 66 0% 68 23.5% 40 60% - - - NULL EIF2C2 27161 genome.wustl.edu 37 8 141566383 141566383 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012154.3 -1 reviewed p.S336Y 0.989 90 0% 95 16.8% 2 0% - - - NULL PTK2 5747 genome.wustl.edu 37 8 141716245 141716245 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005607.3 -1 reviewed p.Q756 1.000 314 0% 97 24.7% 18 33.3% - - - NULL PTK2 5747 genome.wustl.edu 37 8 141762405 141762405 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005607.3 -1 reviewed p.A470D 1.000 226 0% 116 27.6% 20 35% benign(0.003) tolerated(0.44) neutral(0.013) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP DENND3 22898 genome.wustl.edu 37 8 142202480 142202480 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014957.2 +1 validated p.E1064* 0.009 215 0% 197 26.9% 13 7.6% - - - superfamily_WD40 repeat-like SLC45A4 57210 genome.wustl.edu 37 8 142228414 142228414 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080431.1 -1 provisional p.R391H 0.994 12 0% 16 31.2% 10 60% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_MFS_1,superfamily_MFS general substrate transporter FLJ43860 389690 genome.wustl.edu 37 8 142458101 142458101 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207414.2 -1 validated p.L909I 0.811 47 0% 38 18.4% 0 - probably_damaging(0.963) deleterious(0.02) deleterious(0.788) superfamily_ARM repeat FLJ43860 389690 genome.wustl.edu 37 8 142498672 142498672 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207414.2 -1 validated p.C243 0.975 122 0% 97 23.7% 0 - - - - NULL BAI1 575 genome.wustl.edu 37 8 143562622 143562622 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001702.2 +1 reviewed p.I612 1.000 44 0% 82 19.5% 0 - - - - HMMPfam_HRM,HMMSmart_SM00008 BAI1 575 genome.wustl.edu 37 8 143603472 143603472 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001702.2 +1 reviewed p.G1057 0.996 49 0% 54 24.1% 0 - - - - HMMPfam_7tm_2 JRK 8629 genome.wustl.edu 37 8 143746977 143746977 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077527.1 -1 reviewed p.A167 0.985 69 0% 117 33.3% 1 0% - - - NULL LY6K 54742 genome.wustl.edu 37 8 143784692 143784692 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017527.3 +1 validated p.K192T 0.000 314 0% 375 26.7% 7 14.2% probably_damaging(0.994) tolerated(0.11) deleterious(0.724) NULL LYNX1 66004 genome.wustl.edu 37 8 143856749 143856749 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177457.3 -1 reviewed p.S63P 0.999 66 0% 71 18.3% 0 - probably_damaging(0.958) deleterious(0) deleterious(0.846) HMMPfam_UPAR_LY6,HMMSmart_LU,superfamily_SSF57302 C8orf31 286122 genome.wustl.edu 37 8 144124502 144124502 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173687.2 +1 predicted p.R28 0.001 125 0% 77 15.6% 2 0% - - - NULL ZFP41 286128 genome.wustl.edu 37 8 144332045 144332045 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173832.3 +1 provisional p.T11M 0.000 59 0% 71 22.5% 3 0% possibly_damaging(0.836) deleterious(0) deleterious(0.764) NULL TOP1MT 116447 genome.wustl.edu 37 8 144391631 144391631 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052963.1 -1 reviewed p.G596* 0.005 171 0% 190 21.6% 20 60% - - - superfamily_DNA_brk_join_enz RHPN1 114822 genome.wustl.edu 37 8 144462127 144462127 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052924.2 +1 validated p.H358 0.991 47 0% 57 17.5% 36 38.8% - - - HMMPfam_BRO1 ZC3H3 23144 genome.wustl.edu 37 8 144589984 144589984 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015117.2 -1 validated p.S549 0.000 74 1.4% 74 24.3% 29 27.5% - - - NULL GSDMD 79792 genome.wustl.edu 37 8 144644661 144644661 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024736.6 +1 reviewed p.E394 0.020 49 0% 60 33.3% 169 29.5% - - - HMMPfam_Gasdermin C8orf73 642475 genome.wustl.edu 37 8 144649965 144649965 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100878.1 -1 validated p.V620M 0.056 35 0% 44 29.5% 12 8.3% benign(0.429) tolerated(0.78) neutral(0.141) superfamily_ARM-type_fold NAPRT1 93100 genome.wustl.edu 37 8 144657671 144657671 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145201.4 -1 validated p.R405* 0.054 42 0% 52 17.3% 137 4.3% - - - HMMPfam_NAPRTase,superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like ZNF623 9831 genome.wustl.edu 37 8 144732673 144732673 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014789.3 +1 validated p.Q211* 0.152 188 0% 110 20.9% 9 77.7% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FAM83H 286077 genome.wustl.edu 37 8 144809053 144809053 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198488.3 -1 reviewed p.H860Y 0.015 26 0% 40 37.5% 19 47.3% benign(0.016) tolerated(0.2) neutral(0.050) NULL FAM83H 286077 genome.wustl.edu 37 8 144812672 144812672 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198488.3 -1 reviewed p.Y27* 0.996 18 0% 21 23.8% 10 40% - - - HMMPfam_DUF1669 NRBP2 340371 genome.wustl.edu 37 8 144919902 144919902 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178564.3 -1 validated p.R46Q 0.997 78 0% 79 25.3% 8 62.5% benign(0.361) tolerated(0.59) neutral(0.119) NULL PLEC 5339 genome.wustl.edu 37 8 145005737 145005737 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201380.2 -1 reviewed p.V894I 0.990 101 0% 115 20.9% 13 30.7% unknown(0) - - HMMSmart_SM00150,superfamily_Spectrin repeat GRINA 2907 genome.wustl.edu 37 8 145066078 145066078 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000837.1 +1 validated p.V175 1.000 431 0.2% 454 26.4% 378 36.2% - - - HMMPfam_UPF0005 OPLAH 26873 genome.wustl.edu 37 8 145108212 145108212 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426825 -1 known p.R924H 1.000 66 1.5% 102 19.6% 20 25% benign(0.309) tolerated(0.09) neutral(0.393) HMMPfam_Hydantoinase_B OPLAH 26873 genome.wustl.edu 37 8 145111050 145111050 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426825 -1 known p.S699I 1.000 52 0% 69 31.9% 6 0% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) NULL CYC1 1537 genome.wustl.edu 37 8 145151394 145151394 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001916.3 +1 validated p.A203V 1.000 234 0% 327 26.9% 466 44.6% possibly_damaging(0.899) deleterious(0) deleterious(0.800) HMMPfam_Cytochrom_C1,superfamily_Cytochrome c MAF1 84232 genome.wustl.edu 37 8 145160854 145160854 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032272.4 +1 reviewed p.L56 1.000 79 0% 107 12.1% 169 13.6% - - - HMMPfam_Maf1 HEATR7A 727957 genome.wustl.edu 37 8 145245780 145245780 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032450.2 +1 provisional p.D219A 1.000 71 0% 89 16.9% 13 46.1% probably_damaging(0.977) tolerated(0.07) deleterious(0.738) superfamily_ARM repeat FBXL6 26233 genome.wustl.edu 37 8 145580053 145580053 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012162.1 -1 reviewed p.R378S 0.992 36 0% 44 22.7% 47 27.6% possibly_damaging(0.936) deleterious(0) deleterious(0.826) HMMPfam_LRR_2,superfamily_RNI-like ADCK5 203054 genome.wustl.edu 37 8 145608339 145608339 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174922.3 +1 validated p.A58 0.350 100 0% 69 21.7% 12 33.3% - - - NULL ADCK5 203054 genome.wustl.edu 37 8 145616624 145616624 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174922.3 +1 validated p.R250W 0.288 86 0% 144 27.1% 10 50% benign(0.073) deleterious(0.01) neutral(0.411) HMMPfam_ABC1,superfamily_Kinase_like ADCK5 203054 genome.wustl.edu 37 8 145617217 145617217 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174922.3 +1 validated p.G364D 1.000 55 0% 99 22.2% 16 31.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Kinase_like CPSF1 29894 genome.wustl.edu 37 8 145620226 145620226 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013291.2 -1 validated p.Q1095H 1.000 51 0% 58 37.9% 88 38.6% benign(0.018) deleterious(0) neutral(0.445) HMMPfam_CPSF_A CPSF1 29894 genome.wustl.edu 37 8 145623968 145623968 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013291.2 -1 validated p.D567N 0.996 90 0% 126 19.8% 35 42.8% benign(0.002) tolerated(0.22) neutral(0.042) NULL LOC100287098 100287098 genome.wustl.edu 37 8 145660725 145660725 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342882.1 +1 model p.L42M 0.000 18 0% 23 30.4% 0 - - - - NULL TONSL 4796 genome.wustl.edu 37 8 145662268 145662268 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013432.4 -1 reviewed p.V588L 0.871 27 0% 42 33.3% 16 25% probably_damaging(0.985) tolerated(0.06) deleterious(0.754) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat TONSL 4796 genome.wustl.edu 37 8 145668550 145668550 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013432.4 -1 reviewed p.S140N 1.000 74 0% 91 19.8% 8 50% probably_damaging(0.99) deleterious(0) deleterious(0.886) superfamily_TPR-like KIFC2 90990 genome.wustl.edu 37 8 145693782 145693782 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145754.2 +1 provisional p.R294Q 0.879 28 0% 44 15.9% 3 66.6% benign(0.003) tolerated(0.08) neutral(0.300) NULL RECQL4 9401 genome.wustl.edu 37 8 145738699 145738699 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428558 -1 known p.L789M 1.000 7 0.000 8 0.500 11 63.6% - - - HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases RECQL4 9401 genome.wustl.edu 37 8 145740569 145740569 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428558 -1 known p.P483H 0.997 44 0% 60 15% 8 37.5% - - - HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases RECQL4 9401 genome.wustl.edu 37 8 145742455 145742455 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428558 -1 known p.A111 1.000 28 0% 26 26.9% 5 40% - - - NULL LRRC14 9684 genome.wustl.edu 37 8 145746557 145746557 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014665.1 +1 provisional p.A393T 0.000 58 0% 92 25% 26 38.4% benign(0) tolerated(0.93) - superfamily_SSF52047 ZNF34 80778 genome.wustl.edu 37 8 146003436 146003436 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030580.3 -1 validated p.N70 0.019 125 0% 79 16.5% 3 66.6% - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) RPL8 6132 genome.wustl.edu 37 8 146015828 146015828 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000973.3 -1 reviewed p.D176G 1.000 194 0% 261 20.3% 4888 42.5% benign(0.111) deleterious(0.02) neutral(0.392) HMMPfam_Ribosomal_L2_C,superfamily_Translation proteins SH3-like domain ZNF517 340385 genome.wustl.edu 37 8 146029051 146029051 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213605.2 +1 validated p.A20D 0.306 359 0% 514 25.5% 1 0% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF517 340385 genome.wustl.edu 37 8 146032853 146032853 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213605.2 +1 validated p.K184 0.969 41 0% 40 17.5% 2 50% - - - HMMPfam_zf-C2H2,HMMSmart_SM00355 ZNF7 7553 genome.wustl.edu 37 8 146066746 146066746 + Missense_Mutation SNP C C T rs180952992 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003416.2 +1 validated p.T85M 0.000 133 0% 98 22.4% 8 62.5% possibly_damaging(0.806) tolerated(0.1) deleterious(0.590) NULL ZNF7 7553 genome.wustl.edu 37 8 146068012 146068012 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003416.2 +1 validated p.S507I 0.003 224 0% 177 24.3% 14 42.8% probably_damaging(0.991) tolerated(0.63) neutral(0.448) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF250 58500 genome.wustl.edu 37 8 146108164 146108164 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021061.3 -1 validated p.S140* 0.971 576 0.2% 391 26.3% 7 85.7% - - - NULL ZNF252 286101 genome.wustl.edu 37 8 146202046 146202046 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000355436 -1 known p.C601Y 0.000 143 0% 31 22.6% 5 20% benign(0.081) tolerated(0.52) neutral(0.015) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF252 286101 genome.wustl.edu 37 8 146202794 146202794 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000355436 -1 known p.L373I 0.625 116 0% 38 28.9% 5 60% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 FOXD4 2298 genome.wustl.edu 37 9 116946 116946 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207305.3 -1 validated p.A392T 0.956 56 0% 34 26.5% 0 - benign(0) deleterious(0.01) neutral(0.406) NULL DOCK8 81704 genome.wustl.edu 37 9 379892 379892 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203447.3 +1 reviewed p.Y786 0.844 105 0% 40 35% 9 0% - - - NULL DOCK8 81704 genome.wustl.edu 37 9 432257 432257 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203447.3 +1 reviewed p.S1505F 1.000 249 0% 172 19.8% 5 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL DMRT3 58524 genome.wustl.edu 37 9 990808 990808 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021240.2 +1 validated p.V408I 1.000 77 0% 58 22.4% 0 - possibly_damaging(0.636) deleterious(0) deleterious(0.667) NULL SMARCA2 6595 genome.wustl.edu 37 9 2070463 2070463 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003070.3 +1 reviewed p.D580N 1.000 353 0% 252 17.5% 13 69.2% benign(0.355) deleterious(0) deleterious(0.557) NULL RFX3 5991 genome.wustl.edu 37 9 3301594 3301594 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134428.1 -1 reviewed p.Q167H 1.000 235 0% 82 9.8% 2 0% probably_damaging(0.986) tolerated(0.1) deleterious(0.721) NULL GLIS3 169792 genome.wustl.edu 37 9 4286285 4286285 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042413.1 -1 reviewed p.S47 0.269 97 0% 73 19.2% 2 50% - - - NULL SLC1A1 6505 genome.wustl.edu 37 9 4573921 4573921 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004170.5 +1 reviewed p.G261D 1.000 422 0% 203 19.2% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SDF PPAPDC2 403313 genome.wustl.edu 37 9 4663002 4663002 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203453.2 +1 validated p.S209 1.000 198 0% 236 21.6% 9 33.3% - - - HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase PPAPDC2 403313 genome.wustl.edu 37 9 4663166 4663166 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203453.2 +1 validated p.G264D 1.000 292 0% 370 19.5% 12 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase JAK2 3717 genome.wustl.edu 37 9 5089762 5089762 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004972.3 +1 reviewed p.S887I 1.000 323 0% 385 19.5% 10 30% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like RLN2 6019 genome.wustl.edu 37 9 5300262 5300262 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134441.1 -1 reviewed p.L132I 0.004 364 0% 321 21.2% 3 33.3% benign(0) tolerated(0.42) neutral(0.014) HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like KIAA1432 57589 genome.wustl.edu 37 9 5763626 5763626 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020829.2 +1 validated p.E788K 1.000 236 0% 67 23.9% 2 100% possibly_damaging(0.907) deleterious(0.03) deleterious(0.725) HMMPfam_RIC1 KIAA1432 57589 genome.wustl.edu 37 9 5770092 5770092 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020829.2 +1 validated p.E1065* 1.000 184 0% 47 23.4% 3 33.3% - - - NULL RANBP6 26953 genome.wustl.edu 37 9 6012733 6012733 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012416.2 -1 validated p.L959M 1.000 371 0% 509 24.2% 8 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RANBP6 26953 genome.wustl.edu 37 9 6014433 6014433 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012416.2 -1 validated p.A392V 1.000 240 0% 212 14.6% 8 25% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) superfamily_ARM-type_fold UHRF2 115426 genome.wustl.edu 37 9 6421126 6421126 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152896.1 +1 reviewed p.G123D 1.000 514 0% 434 21.4% 10 30% benign(0.325) tolerated(0.74) neutral(0.103) NULL UHRF2 115426 genome.wustl.edu 37 9 6433968 6433968 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152896.1 +1 reviewed p.H147Y 1.000 301 0% 141 27% 7 14.2% benign(0.106) tolerated(0.08) neutral(0.308) NULL UHRF2 115426 genome.wustl.edu 37 9 6434147 6434147 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152896.1 +1 reviewed p.D206 1.000 284 0% 113 28.3% 4 25% - - - NULL SNRPEP2 414153 genome.wustl.edu 37 9 6748924 6748924 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000338402 -1 known p.L20I 0.994 226 0% 139 26.6% 0 - possibly_damaging(0.932) tolerated(0.21) neutral(0.422) superfamily_Sm_like_riboprot KDM4C 23081 genome.wustl.edu 37 9 6805634 6805634 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015061.3 +1 reviewed p.C60 0.916 147 0% 172 22.7% 1 100% - - - NULL KDM4C 23081 genome.wustl.edu 37 9 6984370 6984370 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015061.3 +1 reviewed p.V440 0.028 132 0% 38 36.8% 9 11.1% - - - NULL PTPRD 5789 genome.wustl.edu 37 9 8319853 8319853 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002839.3 -1 reviewed p.R1883Q 1.000 317 0% 70 18.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTPRD 5789 genome.wustl.edu 37 9 8507350 8507350 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002839.3 -1 reviewed p.T543I 1.000 571 0% 189 28% 0 - benign(0) tolerated(0.18) neutral(0.056) HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRD 5789 genome.wustl.edu 37 9 8528707 8528707 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002839.3 -1 reviewed p.T142M 0.998 130 0% 30 36.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin PTPRD 5789 genome.wustl.edu 37 9 8633334 8633334 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002839.3 -1 reviewed p.R112K 1.000 299 0% 106 18.9% 0 - benign(0) tolerated(1) - HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin TYRP1 7306 genome.wustl.edu 37 9 12694201 12694201 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000550.2 +1 reviewed p.T69A 0.894 111 0% 38 31.6% 0 - benign(0.001) tolerated(0.78) neutral(0.001) NULL TYRP1 7306 genome.wustl.edu 37 9 12709135 12709135 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000550.2 +1 reviewed p.A523T 0.915 361 0.3% 123 20.3% 2 0% benign(0.009) tolerated(0.36) neutral(0.021) NULL MPDZ 8777 genome.wustl.edu 37 9 13106992 13106992 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003829.3 -1 validated p.G2033D 1.000 395 0% 164 20.7% 3 33.3% probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like MPDZ 8777 genome.wustl.edu 37 9 13137957 13137957 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003829.3 -1 validated p.E1400V 1.000 181 0% 88 21.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like ZDHHC21 340481 genome.wustl.edu 37 9 14619049 14619049 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178566.4 -1 validated p.G238D 1.000 143 0% 50 16% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FREM1 158326 genome.wustl.edu 37 9 14769832 14769832 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144966.5 -1 reviewed p.D1698E 0.973 286 0% 117 23.9% 1 0% possibly_damaging(0.932) tolerated(0.12) deleterious(0.639) NULL FREM1 158326 genome.wustl.edu 37 9 14859180 14859180 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144966.5 -1 reviewed e3+1 1.000 70 1.4% 26 30.8% 0 - - - - - PSIP1 11168 genome.wustl.edu 37 9 15472718 15472718 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128217.1 -1 validated p.A297T 0.938 822 0% 308 24.7% 74 48.6% benign(0.036) tolerated(0.12) neutral(0.263) NULL C9orf93 203238 genome.wustl.edu 37 9 15623358 15623358 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173550.2 +1 predicted p.S257C 0.996 334 0% 285 14% 1 0% possibly_damaging(0.95) deleterious(0.02) deleterious(0.776) NULL BNC2 54796 genome.wustl.edu 37 9 16419043 16419043 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017637.5 -1 validated p.R1082W 1.000 310 0% 112 23.2% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00355 BNC2 54796 genome.wustl.edu 37 9 16435826 16435826 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017637.5 -1 validated p.S789I 1.000 151 0% 54 16.7% 2 0% possibly_damaging(0.861) tolerated(0.06) deleterious(0.655) NULL BNC2 54796 genome.wustl.edu 37 9 16436325 16436325 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017637.5 -1 validated p.P623S 0.989 211 0% 81 21% 1 100% benign(0) tolerated(0.17) neutral(0.059) NULL CNTLN 54875 genome.wustl.edu 37 9 17340914 17340914 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017738.2 +1 validated p.E578 1.000 304 0% 146 18.5% 5 60% - - - NULL ADAMTSL1 92949 genome.wustl.edu 37 9 18574212 18574212 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040272.4 +1 validated p.G141D 1.000 180 0% 54 14.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ADAMTSL1 92949 genome.wustl.edu 37 9 18639300 18639300 + Missense_Mutation SNP G G T rs776755 byCluster;byFrequency;by2Hit2Allele;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040272.4 +1 validated p.S242I 1.000 213 0% 66 25.8% 0 - possibly_damaging(0.857) deleterious(0.01) deleterious(0.737) NULL DENND4C 55667 genome.wustl.edu 37 9 19328073 19328073 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017925.4 +1 provisional p.P486 0.996 242 0.4% 157 18.5% 1 0% - - - NULL DENND4C 55667 genome.wustl.edu 37 9 19346071 19346071 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017925.4 +1 provisional p.A817T 1.000 428 0% 178 18% 2 0% probably_damaging(1) tolerated(0.2) deleterious(0.549) NULL DENND4C 55667 genome.wustl.edu 37 9 19357028 19357028 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017925.4 +1 provisional p.A1329T 0.617 246 0% 141 25.5% 4 50% benign(0.001) tolerated(0.24) neutral(0.037) NULL MLLT3 4300 genome.wustl.edu 37 9 20413906 20413906 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004529.2 -1 validated p.A313V 0.933 531 0% 160 10% 2 0% probably_damaging(0.99) tolerated(0.11) deleterious(0.713) NULL KIAA1797 54914 genome.wustl.edu 37 9 20715369 20715369 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017794.3 +1 validated p.R6M 1.000 307 0% 116 14.7% 0 - possibly_damaging(0.95) deleterious(0.01) deleterious(0.799) NULL KIAA1797 54914 genome.wustl.edu 37 9 20874689 20874689 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017794.3 +1 validated p.E734* 1.000 408 0% 93 16.1% 2 0% - - - superfamily_ARM-type_fold KIAA1797 54914 genome.wustl.edu 37 9 20981485 20981485 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017794.3 +1 validated p.E1480* 1.000 384 0% 87 33.3% 2 50% - - - superfamily_ARM-type_fold KLHL9 55958 genome.wustl.edu 37 9 21334720 21334720 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018847.2 -1 validated p.G47* 0.998 174 0% 224 11.2% 8 50% - - - superfamily_POZ domain,HMMPfam_BTB IFNA13 3447 genome.wustl.edu 37 9 21367512 21367512 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006900.3 -1 validated p.E166D 0.874 632 0% 306 19% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines IFNA13 3447 genome.wustl.edu 37 9 21367943 21367943 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006900.3 -1 validated p.L23 0.035 325 0% 148 15.5% 0 - - - - HMMPfam_Interferon ELAVL2 1993 genome.wustl.edu 37 9 23692733 23692733 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004432.3 -1 reviewed p.A301D 1.000 236 0% 67 16.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD C9orf82 79886 genome.wustl.edu 37 9 26842373 26842373 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024828.3 -1 validated p.L338 1.000 412 0% 260 23.1% 26 30.7% - - - NULL IFT74 80173 genome.wustl.edu 37 9 27029030 27029030 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099222.1 +1 validated p.D328N 1.000 186 0% 84 15.5% 15 26.6% possibly_damaging(0.712) tolerated(0.16) neutral(0.317) NULL TEK 7010 genome.wustl.edu 37 9 27169569 27169569 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000459.3 +1 reviewed p.S190 0.560 175 0% 46 17.4% 2 0% - - - NULL TEK 7010 genome.wustl.edu 37 9 27206598 27206598 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000459.3 +1 reviewed p.Q795* 1.000 204 0% 63 27% 2 0% - - - NULL MOB3B 79817 genome.wustl.edu 37 9 27455319 27455319 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024761.3 -1 reviewed p.T77I 1.000 342 0% 85 15.3% 8 37.5% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Mob1_phocein,superfamily_Mob1_phocein LOC100288436 100288436 genome.wustl.edu 37 9 30559270 30559270 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342887.1 -1 model p.K56N 0.001 189 0% 166 24.1% 7 0% - - - NULL ACO1 48 genome.wustl.edu 37 9 32427336 32427336 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002197.2 +1 reviewed p.N462 0.002 194 0% 58 36.2% 27 51.8% - - - HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain DDX58 23586 genome.wustl.edu 37 9 32491420 32491420 + Splice_Site SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014314.3 -1 reviewed e5-2 0.168 233 0% 112 20.5% 0 - - - - - DDX58 23586 genome.wustl.edu 37 9 32493845 32493845 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014314.3 -1 reviewed p.E113* 1.000 221 0% 79 21.5% 7 0% - - - NULL TOPORS 10210 genome.wustl.edu 37 9 32542873 32542873 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005802.3 -1 reviewed p.C550 0.202 347 0% 272 18.4% 12 50% - - - NULL TAF1L 138474 genome.wustl.edu 37 9 32631273 32631273 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153809.2 -1 provisional p.D1435E 1.000 600 0% 255 18% 1 0% possibly_damaging(0.94) deleterious(0) deleterious(0.830) HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1 DNAJA1 3301 genome.wustl.edu 37 9 33038709 33038709 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001539.2 +1 validated p.L334 0.987 363 0% 329 25.2% 488 38.5% - - - HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain CHMP5 51510 genome.wustl.edu 37 9 33278165 33278165 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016410.4 +1 validated p.D184G 1.000 528 0% 324 21% 166 37.9% possibly_damaging(0.523) deleterious(0.05) deleterious(0.522) HMMPfam_Snf7 NFX1 4799 genome.wustl.edu 37 9 33294867 33294867 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002504.3 +1 reviewed p.V159M 0.016 178 0% 85 17.6% 4 50% benign(0.066) deleterious(0) neutral(0.449) NULL NFX1 4799 genome.wustl.edu 37 9 33338510 33338510 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002504.3 +1 reviewed p.A680T 1.000 438 0% 151 18.5% 28 35.7% benign(0.311) tolerated(0.56) neutral(0.104) NULL NOL6 65083 genome.wustl.edu 37 9 33463861 33463861 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022917.4 -1 reviewed p.L988I 1.000 130 0% 139 30.9% 35 48.5% probably_damaging(0.972) tolerated(0.27) neutral(0.448) HMMPfam_Nrap ANKRD18B 441459 genome.wustl.edu 37 9 33529083 33529083 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001718334.2 +1 model p.T264I 1.000 364 0% 340 25.3% 0 - benign(0.201) deleterious(0) neutral(0.464) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat PRSS3 5646 genome.wustl.edu 37 9 33795589 33795589 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002771.3 +1 reviewed p.I6 1.000 303 0% 188 22.3% 0 - - - - NULL PRSS3 5646 genome.wustl.edu 37 9 33798495 33798495 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007343.2 +1 reviewed p.D213Y 0.120 383 0% 246 19.5% 3 0% probably_damaging(0.971) deleterious(0.04) deleterious(0.762) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases UBAP2 55833 genome.wustl.edu 37 9 33943450 33943450 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018449.2 -1 reviewed p.Q561H 0.998 342 0% 160 17.5% 13 23% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KIF24 347240 genome.wustl.edu 37 9 34257882 34257882 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194313.2 -1 validated p.P575T 0.952 196 0% 142 9.9% 1 0% possibly_damaging(0.949) deleterious(0.01) deleterious(0.798) NULL RPP25L 138716 genome.wustl.edu 37 9 34611253 34611253 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148178.1 -1 validated p.A14V 0.001 168 0% 197 15.7% 73 28.7% benign(0.071) tolerated(0.52) neutral(0.014) NULL IL11RA 3590 genome.wustl.edu 37 9 34655266 34655266 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142784.1 +1 reviewed p.A18S 1.000 32 0% 44 22.7% 2 100% unknown(0) deleterious(0.01) - NULL IL11RA 3590 genome.wustl.edu 37 9 34655615 34655615 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142784.1 +1 reviewed p.G38 0.996 141 0% 169 13.6% 6 16.6% - - - HMMSmart_SM00409,superfamily_Immunoglobulin FAM205B 389715 genome.wustl.edu 37 9 34837671 34837671 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399773 -1 known p.A57D 0.014 474 0.2% 258 19% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL VCP 7415 genome.wustl.edu 37 9 35059202 35059202 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007126.3 -1 reviewed p.E673 1.000 264 0% 190 26.8% 501 37.9% - - - HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases VCP 7415 genome.wustl.edu 37 9 35061638 35061638 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007126.3 -1 reviewed p.R377H 1.000 634 0% 420 20.7% 329 40.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases VCP 7415 genome.wustl.edu 37 9 35064180 35064180 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007126.3 -1 reviewed p.P227T 1.000 384 0.3% 281 19.6% 168 36.9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases VCP 7415 genome.wustl.edu 37 9 35068312 35068312 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007126.3 -1 reviewed p.R22H 1.000 313 0% 313 15.3% 83 20.4% benign(0.001) tolerated(0.08) neutral(0.300) HMMPfam_CDC48_N,superfamily_ADC-like FANCG 2189 genome.wustl.edu 37 9 35075722 35075722 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004629.1 -1 reviewed p.P391 0.269 86 0% 96 16.7% 29 41.3% - - - superfamily_TPR-like FANCG 2189 genome.wustl.edu 37 9 35077382 35077382 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004629.1 -1 reviewed p.K175N 0.955 228 0% 215 27.9% 22 50% benign(0) tolerated(0.2) neutral(0.049) NULL PIGO 84720 genome.wustl.edu 37 9 35089413 35089413 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032634.2 -1 reviewed p.R1035H 1.000 454 0% 304 24.3% 48 43.7% probably_damaging(1) tolerated(0.17) deleterious(0.559) NULL PIGO 84720 genome.wustl.edu 37 9 35091260 35091260 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032634.2 -1 reviewed p.A875V 1.000 253 0% 156 18.6% 63 33.3% benign(0.002) tolerated(0.49) neutral(0.011) NULL PIGO 84720 genome.wustl.edu 37 9 35091480 35091480 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032634.2 -1 reviewed p.R802* 1.000 107 0% 82 14.6% 10 10% - - - NULL STOML2 30968 genome.wustl.edu 37 9 35101777 35101777 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013442.1 -1 provisional p.A125V 1.000 298 0.3% 296 23.3% 286 46.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Band_7,HMMSmart_PHB FAM214B 80256 genome.wustl.edu 37 9 35105816 35105816 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025182.2 -1 predicted p.F442L 1.000 297 0.3% 342 12.3% 9 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LOC730110 730110 genome.wustl.edu 37 9 35148582 35148582 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342891.1 -1 model p.P200 0.987 172 0% 124 16.1% 1 0% - - - superfamily_C2H2 and C2HC zinc fingers UNC13B 10497 genome.wustl.edu 37 9 35236477 35236477 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006377.3 +1 reviewed p.R55H 1.000 502 0% 175 21.7% 1 0% benign(0.026) deleterious(0.03) neutral(0.365) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB RUSC2 9853 genome.wustl.edu 37 9 35560765 35560765 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135999.1 +1 validated p.A1376 0.000 12 0% 20 35% 7 0% - - - NULL TPM2 7169 genome.wustl.edu 37 9 35682156 35682156 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213674.1 -1 reviewed p.T259 1.000 128 0% 119 22.7% 395 27.8% - - - HMMPfam_Tropomyosin TLN1 7094 genome.wustl.edu 37 9 35704393 35704393 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006289.3 -1 reviewed p.T1995A 1.000 243 0% 155 20% 116 37.9% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) NULL TLN1 7094 genome.wustl.edu 37 9 35708404 35708404 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006289.3 -1 reviewed p.A1468 1.000 113 0% 75 24% 52 0% - - - superfamily_SSF109885 TLN1 7094 genome.wustl.edu 37 9 35719097 35719097 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006289.3 -1 reviewed p.R624C 1.000 35 0% 26 23.1% 18 38.8% possibly_damaging(0.922) deleterious(0) deleterious(0.816) HMMPfam_Talin_middle,superfamily_Talin_cent TLN1 7094 genome.wustl.edu 37 9 35720093 35720093 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006289.3 -1 reviewed p.P469 0.385 104 0% 71 19.7% 25 0% - - - NULL TLN1 7094 genome.wustl.edu 37 9 35724324 35724324 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006289.3 -1 reviewed p.W173* 1.000 130 0% 114 26.3% 12 0% - - - HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236 GBA2 57704 genome.wustl.edu 37 9 35741839 35741839 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020944.2 -1 reviewed p.L206M 1.000 172 0% 165 21.8% 11 27.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NPR2 4882 genome.wustl.edu 37 9 35792411 35792411 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003995.3 +1 reviewed p.A2 0.997 64 0% 71 18.3% 0 - - - - NULL NPR2 4882 genome.wustl.edu 37 9 35809392 35809392 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003995.3 +1 reviewed p.R1032* 1.000 261 0% 221 22.6% 7 14.2% - - - HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain C9orf128 392307 genome.wustl.edu 37 9 35825877 35825877 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012446.2 -1 validated p.L94 0.004 243 0% 296 25.3% 0 - - - - NULL C9orf128 392307 genome.wustl.edu 37 9 35826074 35826074 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012446.2 -1 validated p.D29Y 0.976 165 0% 228 17.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RECK 8434 genome.wustl.edu 37 9 36087808 36087808 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021111.2 +1 reviewed p.T252I 0.954 299 0% 84 23.8% 0 - possibly_damaging(0.836) tolerated(0.1) deleterious(0.606) NULL RECK 8434 genome.wustl.edu 37 9 36108127 36108127 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021111.2 +1 reviewed p.L577 0.951 348 0% 212 17.5% 0 - - - - NULL CCIN 881 genome.wustl.edu 37 9 36170194 36170194 + Missense_Mutation SNP C C T rs147304766 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005893.2 +1 reviewed p.T232M 0.953 62 0% 48 33.3% 0 - probably_damaging(1) tolerated(0.11) deleterious(0.772) HMMPfam_BACK RNF38 152006 genome.wustl.edu 37 9 36376030 36376030 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022781.4 -1 reviewed p.P86L 1.000 537 0% 259 26.3% 10 30% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MELK 9833 genome.wustl.edu 37 9 36630336 36630336 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014791.2 +1 provisional p.S236I 0.993 421 0% 201 20.4% 30 46.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PAX5 5079 genome.wustl.edu 37 9 36882027 36882027 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016734.1 -1 reviewed p.A329V 0.999 48 0% 31 32.3% 0 - unknown(0) deleterious(0) - NULL ZCCHC7 84186 genome.wustl.edu 37 9 37305609 37305609 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032226.2 +1 validated p.C283 1.000 391 0% 197 26.9% 19 47.3% - - - superfamily_Retrovirus zinc finger-like domains FBXO10 26267 genome.wustl.edu 37 9 37537191 37537191 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012166.2 -1 validated p.F445 0.825 42 0% 28 35.7% 0 - - - - HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like FRMPD1 22844 genome.wustl.edu 37 9 37731053 37731053 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014907.2 +1 validated p.D271N 0.998 254 0% 140 17.1% 0 - possibly_damaging(0.824) tolerated(0.2) neutral(0.361) HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 FRMPD1 22844 genome.wustl.edu 37 9 37733588 37733588 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014907.2 +1 validated p.R372* 1.000 282 0% 180 31.1% 0 - - - - HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 FRMPD1 22844 genome.wustl.edu 37 9 37733763 37733763 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014907.2 +1 validated p.L387I 1.000 608 0% 377 18.8% 0 - probably_damaging(0.988) tolerated(0.06) deleterious(0.760) HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 FRMPD1 22844 genome.wustl.edu 37 9 37740712 37740712 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014907.2 +1 validated p.R729 0.226 37 0% 35 11.4% 0 - - - - NULL FRMPD1 22844 genome.wustl.edu 37 9 37744561 37744561 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014907.2 +1 validated p.T844 0.365 113 0% 114 15.8% 0 - - - - NULL ALDH1B1 219 genome.wustl.edu 37 9 38396762 38396762 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000692.3 +1 reviewed p.T339 0.257 171 0% 98 15.3% 24 29.1% - - - HMMPfam_Aldedh,superfamily_ALDH-like C9orf51 647044 genome.wustl.edu 37 9 38527781 38527781 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000377689 +1 known p.D230Y 0.018 149 0% 245 18% 0 - benign(0.076) deleterious(0.01) neutral(0.411) NULL ZNF658 26149 genome.wustl.edu 37 9 40774424 40774424 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033160.5 -1 validated p.A284D 0.000 839 0.1% 272 15.1% 1 0% benign(0.009) deleterious(0.01) neutral(0.406) superfamily_C2H2 and C2HC zinc fingers ZNF658 26149 genome.wustl.edu 37 9 40784561 40784561 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033160.5 -1 validated p.E20K 0.994 271 0% 163 18.4% 1 0% possibly_damaging(0.945) tolerated(0.05) deleterious(0.735) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ENSG00000221917 0 genome.wustl.edu 37 9 69440235 69440235 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000333394 +1 known p.L107 0.073 150 0% 60 10% 0 - - - - NULL PGM5 5239 genome.wustl.edu 37 9 70993224 70993224 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021965.3 +1 validated p.C124Y 1.000 389 0% 103 11.7% 3 66.6% benign(0.025) deleterious(0) neutral(0.446) HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS FAM122A 116224 genome.wustl.edu 37 9 71395725 71395725 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138333.3 +1 validated p.K215N 1.000 202 0% 281 24.9% 17 29.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL PTAR1 375743 genome.wustl.edu 37 9 72347118 72347118 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099666.1 -1 validated p.S193 1.000 309 0% 71 16.9% 1 0% - - - HMMPfam_PPTA,superfamily_Prenyl_trans C9orf135 138255 genome.wustl.edu 37 9 72472895 72472895 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010940.1 +1 validated e4+2 0.997 315 0% 74 17.6% 0 - - - - - SMC5 23137 genome.wustl.edu 37 9 72892281 72892281 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015110.3 +1 validated p.Q146* 1.000 304 0% 232 20.7% 1 0% - - - HMMPfam_SMC_N,superfamily_SSF52540 KLF9 687 genome.wustl.edu 37 9 73027796 73027796 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001206.2 -1 reviewed p.A162T 1.000 89 1.1% 110 26.4% 2 0% probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TRPM3 80036 genome.wustl.edu 37 9 73151027 73151027 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007471.2 -1 reviewed p.I1656V 1.000 279 0% 196 24% 0 - benign(0) deleterious(0.05) neutral(0.345) NULL TRPM3 80036 genome.wustl.edu 37 9 73151792 73151792 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007471.2 -1 reviewed p.D1401N 1.000 265 0% 158 22.8% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL TRPM3 80036 genome.wustl.edu 37 9 73457904 73457904 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000377097 -1 known p.A162D 0.000 150 0% 100 27% 0 - - - - NULL TMEM2 23670 genome.wustl.edu 37 9 74324191 74324191 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013390.2 -1 validated p.S990N 1.000 422 0% 156 21.2% 11 27.2% probably_damaging(0.998) tolerated(0.22) deleterious(0.516) NULL TMEM2 23670 genome.wustl.edu 37 9 74324338 74324338 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013390.2 -1 validated p.E941V 1.000 389 0% 141 24.1% 5 0% possibly_damaging(0.677) deleterious(0.03) deleterious(0.605) NULL TMEM2 23670 genome.wustl.edu 37 9 74349722 74349722 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013390.2 -1 validated p.E465* 1.000 414 0% 162 22.8% 1 0% - - - NULL FAM108B1 51104 genome.wustl.edu 37 9 74481811 74481811 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016014.2 -1 validated p.P253 1.000 168 0% 81 19.8% 10 20% - - - superfamily_SSF53474 TMC1 117531 genome.wustl.edu 37 9 75450886 75450886 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138691.2 +1 reviewed p.Q760H 0.999 185 0% 197 28.9% 0 - unknown(0) deleterious(0) - NULL TRPM6 140803 genome.wustl.edu 37 9 77376985 77376985 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017662.4 -1 reviewed p.R1534 0.000 380 0% 161 19.9% 1 0% - - - NULL TRPM6 140803 genome.wustl.edu 37 9 77473640 77473640 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017662.4 -1 reviewed p.V20L 0.999 439 0% 546 11.2% 0 - unknown(0) tolerated(0.11) - NULL C9orf41 138199 genome.wustl.edu 37 9 77614697 77614697 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152420.1 -1 predicted p.G227V 1.000 310 0% 165 25.5% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_N2227,superfamily_SSF53335 PCSK5 5125 genome.wustl.edu 37 9 78686802 78686802 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006200.3 +1 reviewed p.N294 0.512 65 0% 43 18.6% 2 50% - - - HMMPfam_Peptidase_S8,superfamily_Subtilisin-like PRUNE2 158471 genome.wustl.edu 37 9 79319877 79319877 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015225.2 -1 validated p.R2438I 0.000 159 0% 55 16.4% 1 100% probably_damaging(0.982) deleterious(0) deleterious(0.871) NULL VPS13A 23230 genome.wustl.edu 37 9 79934542 79934542 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033305.2 +1 reviewed p.E1790* 1.000 256 0% 131 24.4% 1 100% - - - NULL VPS13A 23230 genome.wustl.edu 37 9 79938056 79938056 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419472 +1 known p.T221I 1.000 239 0% 53 18.9% 1 0% - - - NULL GNA14 9630 genome.wustl.edu 37 9 80049401 80049401 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004297.3 -1 reviewed p.K116T 1.000 261 0% 148 19.6% 1 0% benign(0) tolerated(0.8) neutral(0.001) HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases PSAT1 29968 genome.wustl.edu 37 9 80919840 80919840 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058179.2 +1 reviewed p.K127 1.000 211 0.5% 148 12.2% 222 39.6% - - - HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases PSAT1 29968 genome.wustl.edu 37 9 80923405 80923405 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058179.2 +1 reviewed p.L216 1.000 418 0% 280 20.4% 258 73.6% - - - HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases TLE4 7091 genome.wustl.edu 37 9 82324604 82324604 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007005.3 +1 validated p.G444* 1.000 163 0% 155 23.9% 3 0% - - - superfamily_WD40 repeat-like TLE4 7091 genome.wustl.edu 37 9 82337915 82337915 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007005.3 +1 validated p.A727T 1.000 407 0% 270 18.5% 4 0% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 FAM75D1 389763 genome.wustl.edu 37 9 84608806 84608806 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001670.2 +1 validated p.Q1141* 0.001 159 0% 71 28.2% 0 - - - - NULL FAM75D1 389763 genome.wustl.edu 37 9 84609430 84609430 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001670.2 +1 validated p.L1349I 0.000 76 0% 49 30.6% 0 - possibly_damaging(0.539) tolerated(0.49) neutral(0.193) NULL RASEF 158158 genome.wustl.edu 37 9 85611989 85611989 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152573.2 -1 provisional p.L620M 1.000 591 0% 171 19.9% 3 100% probably_damaging(0.988) deleterious(0.02) deleterious(0.821) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases RASEF 158158 genome.wustl.edu 37 9 85622385 85622385 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152573.2 -1 provisional p.R332Q 1.000 644 0.2% 293 25.9% 1 0% probably_damaging(1) tolerated(0.47) deleterious(0.511) NULL RASEF 158158 genome.wustl.edu 37 9 85630720 85630720 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152573.2 -1 provisional p.K255 1.000 364 0% 236 16.5% 0 - - - - NULL FRMD3 257019 genome.wustl.edu 37 9 85863361 85863361 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174938.4 -1 validated p.R422 0.001 166 0% 116 26.7% 3 0% - - - NULL FRMD3 257019 genome.wustl.edu 37 9 85925406 85925406 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174938.4 -1 validated p.Q277H 1.000 369 0% 361 22.2% 1 0% probably_damaging(0.961) tolerated(0.12) deleterious(0.665) HMMPfam_FERM_C,superfamily_PH domain-like UBQLN1 29979 genome.wustl.edu 37 9 86294875 86294875 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013438.4 -1 reviewed p.Q176* 1.000 205 0% 147 19.7% 23 0% - - - NULL KIF27 55582 genome.wustl.edu 37 9 86518264 86518264 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017576.1 -1 provisional p.D390A 0.985 281 0% 161 17.4% 2 50% possibly_damaging(0.907) tolerated(0.13) deleterious(0.613) NULL RMI1 80010 genome.wustl.edu 37 9 86616829 86616829 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024945.2 +1 validated p.E310* 0.894 177 0% 70 22.9% 20 45% - - - NULL SLC28A3 64078 genome.wustl.edu 37 9 86912922 86912922 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022127.1 -1 provisional p.P228S 1.000 326 0% 98 29.6% 1 100% benign(0.057) tolerated(0.3) neutral(0.032) HMMPfam_Nucleos_tra2_N AGTPBP1 23287 genome.wustl.edu 37 9 88193856 88193856 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015239.2 -1 validated p.G1067 0.996 357 0% 355 22.8% 14 14.2% - - - HMMPfam_Peptidase_M14,superfamily_SSF53187 AGTPBP1 23287 genome.wustl.edu 37 9 88200431 88200431 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015239.2 -1 validated p.H998Y 1.000 288 0% 194 18% 19 26.3% possibly_damaging(0.602) tolerated(0.29) neutral(0.237) HMMPfam_Peptidase_M14,superfamily_SSF53187 AGTPBP1 23287 genome.wustl.edu 37 9 88236145 88236145 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015239.2 -1 validated p.R651C 1.000 128 0% 72 12.5% 9 11.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL AGTPBP1 23287 genome.wustl.edu 37 9 88247609 88247609 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015239.2 -1 validated p.E621 0.999 168 0% 57 14% 6 33.3% - - - NULL LOC100129901 100129901 genome.wustl.edu 37 9 88396228 88396228 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001716099.2 +1 model p.K31T 1.000 321 0% 189 19.6% 4 25% - - - NULL NAA35 60560 genome.wustl.edu 37 9 88633682 88633682 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024635.3 +1 validated p.K661 1.000 354 0% 156 22.4% 19 21% - - - NULL GOLM1 51280 genome.wustl.edu 37 9 88692495 88692495 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016548.3 -1 reviewed p.M47I 0.980 124 0% 94 18.1% 33 39.3% benign(0) tolerated(0.63) neutral(0.004) NULL C9orf153 389766 genome.wustl.edu 37 9 88842850 88842850 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010907.1 -1 predicted p.Q54H 0.421 442 0% 107 19.6% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL DAPK1 1612 genome.wustl.edu 37 9 90321119 90321119 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004938.2 +1 reviewed p.L1045M 1.000 52 0% 55 20% 22 45.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL C9orf79 286234 genome.wustl.edu 37 9 90499880 90499880 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178828.4 +1 validated p.D160Y 0.002 44 0% 44 11.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SHC3 53358 genome.wustl.edu 37 9 91680458 91680458 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016848.4 -1 validated p.P274H 1.000 257 0% 141 26.2% 2 100% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like SECISBP2 79048 genome.wustl.edu 37 9 91973698 91973698 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024077.3 +1 reviewed p.L842V 0.017 439 0% 384 21.6% 20 45% probably_damaging(0.979) tolerated(0.11) deleterious(0.694) NULL SEMA4D 10507 genome.wustl.edu 37 9 92002499 92002499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006378.3 -1 validated p.A378T 0.938 233 0% 234 21.8% 30 30% benign(0.051) tolerated(0.57) neutral(0.009) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema NFIL3 4783 genome.wustl.edu 37 9 94171907 94171907 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005384.2 -1 validated p.A370 0.000 221 0% 231 22.1% 23 43.4% - - - HMMPfam_Vert_IL3-reg_TF NFIL3 4783 genome.wustl.edu 37 9 94172352 94172352 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005384.2 -1 validated p.P222L 0.995 286 0.3% 333 19.5% 14 35.7% probably_damaging(0.957) deleterious(0) deleterious(0.845) HMMPfam_Vert_IL3-reg_TF ROR2 4920 genome.wustl.edu 37 9 94486010 94486010 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004560.2 -1 reviewed p.E922D 1.000 55 0% 70 17.1% 1 100% possibly_damaging(0.787) deleterious(0) deleterious(0.739) NULL ROR2 4920 genome.wustl.edu 37 9 94487141 94487141 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004560.2 -1 reviewed p.K545N 0.995 62 0% 55 21.8% 2 0% probably_damaging(0.983) tolerated(0.23) deleterious(0.470) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like ROR2 4920 genome.wustl.edu 37 9 94488879 94488879 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004560.2 -1 reviewed p.L444M 1.000 76 0% 58 10.3% 0 - possibly_damaging(0.86) tolerated(0.22) neutral(0.374) NULL IARS 3376 genome.wustl.edu 37 9 95050457 95050457 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002161.4 -1 reviewed p.G76E 1.000 239 0% 190 22.6% 13 53.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_1,superfamily_SSF52374 NOL8 55035 genome.wustl.edu 37 9 95085569 95085569 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024020.1 -1 validated NULL 0.000 111 0% 111 26.1% 0 - - - - - CENPP 401541 genome.wustl.edu 37 9 95107991 95107991 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012267.1 +1 validated p.R130I 0.003 257 0% 279 16.5% 3 66.6% possibly_damaging(0.5) tolerated(0.13) neutral(0.419) NULL OGN 4969 genome.wustl.edu 37 9 95148028 95148028 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014057.3 -1 reviewed p.A257 0.993 292 0% 131 22.1% 1 0% - - - superfamily_L domain-like ECM2 1842 genome.wustl.edu 37 9 95284931 95284931 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001393.2 -1 reviewed p.D73G 0.063 626 0% 354 13.8% 3 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL ZNF484 83744 genome.wustl.edu 37 9 95608929 95608929 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031486.1 -1 provisional p.H714N 1.000 217 0% 174 18.4% 2 0% possibly_damaging(0.545) deleterious(0) deleterious(0.629) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF484 83744 genome.wustl.edu 37 9 95609569 95609569 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031486.1 -1 provisional p.V500 0.472 324 0% 219 24.2% 1 100% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF484 83744 genome.wustl.edu 37 9 95610411 95610411 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031486.1 -1 provisional p.V220M 0.000 347 0% 192 25% 0 - benign(0) tolerated(0.11) neutral(0.272) superfamily_SSF57667 FGD3 89846 genome.wustl.edu 37 9 95772575 95772575 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083536.1 +1 validated p.E295 1.000 43 0% 22 36.4% 5 0% - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) FGD3 89846 genome.wustl.edu 37 9 95782705 95782705 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083536.1 +1 validated p.P498H 0.481 146 0% 104 22.1% 17 0% probably_damaging(0.982) deleterious(0.03) deleterious(0.791) superfamily_FYVE/PHD zinc finger SUSD3 203328 genome.wustl.edu 37 9 95838074 95838074 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145006.2 +1 provisional p.A33T 0.000 38 0% 35 20% 4 0% benign(0.004) tolerated(0.48) neutral(0.011) HMMSmart_SM00032,superfamily_Complement control module/SCR domain SUSD3 203328 genome.wustl.edu 37 9 95840225 95840225 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145006.2 +1 provisional p.T125 1.000 99 0% 115 16.5% 15 6.6% - - - NULL WNK2 65268 genome.wustl.edu 37 9 96061356 96061356 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006648.3 +1 reviewed p.H1976Q 1.000 24 0% 23 26.1% 11 27.2% probably_damaging(0.983) tolerated(0.06) deleterious(0.752) NULL FAM120A 23196 genome.wustl.edu 37 9 96233517 96233517 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014612.3 +1 validated p.A190V 1.000 258 0.4% 105 27.6% 57 35% possibly_damaging(0.915) tolerated(0.46) neutral(0.379) superfamily_PIN domain-like FAM120A 23196 genome.wustl.edu 37 9 96294606 96294606 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000446420 +1 known p.Q478* 1.000 125 0% 81 30.9% 43 44.1% benign(0.003) tolerated(0.62) neutral(0.004) NULL FAM120A 23196 genome.wustl.edu 37 9 96318700 96318700 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014612.3 +1 validated p.A771S 0.999 219 1.4% 168 28% 62 48.3% benign(0.393) tolerated(0.57) neutral(0.132) NULL PHF2 5253 genome.wustl.edu 37 9 96415578 96415578 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005392.3 +1 reviewed p.C240 0.985 120 0% 89 21.3% 16 43.7% - - - HMMSmart_JmjC,HMMPfam_JmjC,superfamily_SSF51197 ZNF169 169841 genome.wustl.edu 37 9 97062307 97062307 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194320.2 +1 validated p.R156M 0.000 190 0% 55 21.8% 0 - benign(0.3) tolerated(0.09) neutral(0.389) NULL ZNF169 169841 genome.wustl.edu 37 9 97062685 97062685 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194320.2 +1 validated p.R282M 1.000 130 0% 48 31.2% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 FBP1 2203 genome.wustl.edu 37 9 97365684 97365684 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000507.3 -1 reviewed p.Y332 0.000 104 0% 79 20.3% 52 3.8% - - - HMMPfam_FBPase,superfamily_Carbohydrate phosphatase FANCC 2176 genome.wustl.edu 37 9 97869460 97869460 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000136.2 -1 reviewed p.G474D 0.000 413 0% 387 25.1% 8 25% benign(0.001) tolerated(0.65) neutral(0.003) HMMPfam_Fanconi_C PTCH1 5727 genome.wustl.edu 37 9 98211390 98211390 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000264.3 -1 reviewed p.I1255 0.812 41 0% 44 18.2% 1 100% - - - NULL PTCH1 5727 genome.wustl.edu 37 9 98224162 98224162 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000264.3 -1 reviewed p.R893 0.015 218 0% 183 29% 5 0% - - - HMMPfam_Patched PTCH1 5727 genome.wustl.edu 37 9 98231257 98231257 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000264.3 -1 reviewed p.Y676H 1.000 312 0% 247 21.9% 0 - possibly_damaging(0.883) tolerated(0.48) neutral(0.355) HMMPfam_Patched PTCH1 5727 genome.wustl.edu 37 9 98242843 98242843 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000264.3 -1 reviewed p.N258 1.000 327 0% 235 16.2% 2 0% unknown(0) tolerated(0.12) - HMMPfam_Patched C9orf102 375748 genome.wustl.edu 37 9 98683520 98683520 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010895.2 +1 validated p.D419N 1.000 373 0% 126 18.3% 1 0% probably_damaging(1) tolerated(0.25) deleterious(0.537) HMMPfam_SNF2_N C9orf102 375748 genome.wustl.edu 37 9 98728963 98728963 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000402838 +1 known p.P11L 0.944 356 0% 94 22.3% 0 - - - - NULL HSD17B3 3293 genome.wustl.edu 37 9 99012069 99012069 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000197.1 -1 reviewed e6-1 0.994 405 0% 168 19.6% 0 - - - - - HABP4 22927 genome.wustl.edu 37 9 99220766 99220766 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014282.2 +1 validated p.R152Q 0.940 158 0% 137 15.3% 7 14.2% unknown(0) deleterious(0.03) - NULL HABP4 22927 genome.wustl.edu 37 9 99227630 99227630 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014282.2 +1 validated p.R175M 1.000 242 0% 177 22% 12 41.6% probably_damaging(0.982) tolerated(0.09) deleterious(0.723) NULL ZNF510 22869 genome.wustl.edu 37 9 99521735 99521735 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014930.1 -1 provisional p.P459 0.795 318 0% 161 26.1% 2 0% - - - superfamily_C2H2 and C2HC zinc fingers ZNF782 158431 genome.wustl.edu 37 9 99589420 99589420 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000289032 -1 known p.R51G 1.000 345 0% 118 16.1% 0 - - - - NULL ZNF782 158431 genome.wustl.edu 37 9 99607217 99607217 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001662.1 -1 provisional p.Y33H 0.999 196 0% 134 11.9% 2 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) FAM22G 441457 genome.wustl.edu 37 9 99701016 99701016 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000372322 +1 known p.P604L 0.006 299 0% 222 15.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL CTSL2 1515 genome.wustl.edu 37 9 99795269 99795269 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001333.2 -1 reviewed p.C323R 1.000 330 0% 351 19.7% 18 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001 C9orf174 100499483 genome.wustl.edu 37 9 100070368 100070368 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020893.1 +1 predicted p.T191I 0.676 58 0% 49 32.7% 3 0% probably_damaging(0.976) tolerated(0.06) deleterious(0.740) NULL C9orf174 100499483 genome.wustl.edu 37 9 100124716 100124716 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020893.1 +1 predicted p.A1277T 0.000 117 0% 91 25.3% 1 100% benign(0.005) tolerated(0.07) neutral(0.319) NULL XPA 7507 genome.wustl.edu 37 9 100437843 100437843 + Missense_Mutation SNP C C T rs3176749 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000380.3 -1 reviewed p.V234M 0.133 268 0% 139 20.1% 16 62.5% benign(0.02) tolerated(0.14) neutral(0.251) NULL HEMGN 55363 genome.wustl.edu 37 9 100692687 100692687 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018437.3 -1 validated p.N330 0.127 873 0% 788 20.6% 0 - - - - NULL ANP32B 10541 genome.wustl.edu 37 9 100773654 100773654 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006401.2 +1 validated p.D207N 0.999 1036 0% 352 10.5% 613 21.8% unknown(0) tolerated(0.24) - NULL TBC1D2 55357 genome.wustl.edu 37 9 100965671 100965671 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018421.3 -1 validated p.L724M 1.000 126 0% 108 18.5% 20 55% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC TBC1D2 55357 genome.wustl.edu 37 9 100995759 100995759 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018421.3 -1 validated p.S240 0.000 351 0% 168 19.6% 10 70% - - - NULL TBC1D2 55357 genome.wustl.edu 37 9 101014164 101014164 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018421.3 -1 validated p.Q138H 1.000 51 0% 65 18.5% 8 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 GABBR2 9568 genome.wustl.edu 37 9 101053032 101053032 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005458.7 -1 reviewed e19-1 1.000 162 0% 124 21.8% 0 - - - - - GABBR2 9568 genome.wustl.edu 37 9 101304300 101304300 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005458.7 -1 reviewed p.V162G 0.997 122 0% 38 18.4% 0 - benign(0.007) tolerated(0.13) neutral(0.253) HMMPfam_ANF_receptor,superfamily_SSF53822 GALNT12 79695 genome.wustl.edu 37 9 101585579 101585579 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024642.3 +1 validated p.T138I 0.996 263 0% 244 21.3% 7 14.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Nucleotide-diphospho-sugar transferases GALNT12 79695 genome.wustl.edu 37 9 101594053 101594053 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024642.3 +1 validated e4-1 1.000 260 0% 196 16.8% 1 0% - - - - COL15A1 1306 genome.wustl.edu 37 9 101763227 101763227 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001855.3 +1 reviewed p.E353D 0.004 153 0% 110 23.6% 7 0% benign(0.157) tolerated(0.61) neutral(0.018) NULL COL15A1 1306 genome.wustl.edu 37 9 101816919 101816919 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001855.3 +1 reviewed p.Q1004H 0.999 408 0% 161 19.3% 21 0% probably_damaging(0.992) - - HMMPfam_Collagen,superfamily_C-type_lectin_fold TGFBR1 7046 genome.wustl.edu 37 9 101894795 101894795 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004612.2 +1 reviewed p.K116 1.000 207 0% 58 22.4% 4 50% - - - superfamily_Snake toxin-like TGFBR1 7046 genome.wustl.edu 37 9 101894984 101894984 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004612.2 +1 reviewed p.D179 0.965 182 0% 47 21.3% 4 25% - - - HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like) TGFBR1 7046 genome.wustl.edu 37 9 101910042 101910042 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004612.2 +1 reviewed p.I454 1.000 231 0% 55 21.8% 2 50% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase KRT8P11 347265 genome.wustl.edu 37 9 102068286 102068286 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409686 +1 known p.Y298C 1.000 32 0% 36 22.2% 0 - probably_damaging(0.993) deleterious(0.02) deleterious(0.833) HMMPfam_Filament KRT8P11 347265 genome.wustl.edu 37 9 102068869 102068869 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409686 +1 known p.E492 1.000 32 0% 39 41% 0 - - - - NULL NR4A3 8013 genome.wustl.edu 37 9 102590493 102590493 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173200.1 +1 reviewed p.S68G 1.000 96 0% 94 21.3% 0 - possibly_damaging(0.94) deleterious(0) deleterious(0.830) NULL NR4A3 8013 genome.wustl.edu 37 9 102606952 102606952 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173200.1 +1 reviewed p.A437T 0.026 155 0% 79 24.1% 0 - benign(0) tolerated(0.76) neutral(0.001) superfamily_Str_ncl_receptor TEX10 54881 genome.wustl.edu 37 9 103070854 103070854 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017746.3 -1 validated p.A798V 1.000 207 0% 83 20.5% 64 50% possibly_damaging(0.952) tolerated(0.3) neutral(0.424) NULL TEX10 54881 genome.wustl.edu 37 9 103109264 103109264 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017746.3 -1 validated p.R202I 1.000 194 0% 181 10.5% 10 60% possibly_damaging(0.454) tolerated(0.08) neutral(0.449) NULL BAAT 570 genome.wustl.edu 37 9 104125077 104125077 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127610.1 -1 reviewed p.R297H 0.000 266 0.8% 63 12.7% 0 - benign(0.001) tolerated(0.26) neutral(0.034) HMMPfam_BAAT_C,superfamily_SSF53474 ZNF189 7743 genome.wustl.edu 37 9 104171853 104171853 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003452.2 +1 validated p.C601 1.000 193 0% 58 19% 14 57.1% - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers C9orf125 84302 genome.wustl.edu 37 9 104238826 104238826 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032342.1 -1 provisional p.S183 0.003 98 0% 79 19% 9 100% - - - NULL SMC2 10592 genome.wustl.edu 37 9 106882397 106882397 + Missense_Mutation SNP C C T rs145598831 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042550.1 +1 validated p.R696W 0.014 196 0% 52 25% 13 46.1% probably_damaging(0.966) deleterious(0.01) deleterious(0.814) HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases SMC2 10592 genome.wustl.edu 37 9 106887315 106887315 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042550.1 +1 validated p.A794T 1.000 232 0% 65 15.4% 24 33.3% benign(0.258) deleterious(0.01) neutral(0.433) HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases OR13C5 138799 genome.wustl.edu 37 9 107361454 107361454 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004482.1 -1 provisional p.T81A 0.000 673 0% 122 13.9% 0 - benign(0.002) deleterious(0.01) neutral(0.406) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR13C9 286362 genome.wustl.edu 37 9 107380331 107380331 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001956.1 -1 provisional p.D52V 0.007 661 0% 245 24.1% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_7tm_1,superfamily_SSF81321 ABCA1 19 genome.wustl.edu 37 9 107576501 107576501 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005502.2 -1 reviewed p.P1267S 1.000 80 0% 46 28.3% 2 0% benign(0.05) tolerated(0.16) neutral(0.062) NULL ABCA1 19 genome.wustl.edu 37 9 107593329 107593329 + Nonsense_Mutation SNP C C T rs137854496 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005502.2 -1 reviewed p.W590* 1.000 144 0% 79 12.7% 4 0% - - - NULL ABCA1 19 genome.wustl.edu 37 9 107595036 107595036 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005502.2 -1 reviewed p.R443M 0.989 271 0.4% 128 14.8% 1 0% benign(0.257) tolerated(0.13) neutral(0.279) NULL SLC44A1 23446 genome.wustl.edu 37 9 108118546 108118546 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080546.3 +1 validated p.A185V 1.000 378 0% 394 20.3% 21 47.6% benign(0.124) tolerated(0.23) neutral(0.052) NULL FSD1L 83856 genome.wustl.edu 37 9 108246663 108246663 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145313.1 +1 validated p.V156F 1.000 176 0.6% 127 13.4% 2 100% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00502 ZNF462 58499 genome.wustl.edu 37 9 109686673 109686673 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021224.4 +1 validated p.K160 1.000 58 0% 72 27.8% 0 - - - - NULL ZNF462 58499 genome.wustl.edu 37 9 109694551 109694551 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441147 +1 known p.A852V 1.000 19 0% 25 24% 3 66.6% possibly_damaging(0.93) tolerated(0.13) deleterious(0.629) NULL ZNF462 58499 genome.wustl.edu 37 9 109694791 109694791 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021224.4 +1 validated p.S2026I 1.000 172 0% 132 23.5% 6 66.6% benign(0.323) tolerated(0.1) neutral(0.387) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24 RAD23B 5887 genome.wustl.edu 37 9 110068897 110068897 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002874.3 +1 reviewed p.P156S 1.000 137 0% 81 25.9% 116 36.2% unknown(0) deleterious(0.02) - NULL RAD23B 5887 genome.wustl.edu 37 9 110081148 110081148 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000457811 +1 known p.S93N 1.000 269 0.4% 157 25.5% 107 39.2% - - - HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165 RAD23B 5887 genome.wustl.edu 37 9 110087223 110087223 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002874.3 +1 reviewed p.A352S 1.000 333 0% 187 21.9% 133 41.3% benign(0.096) tolerated(0.46) neutral(0.019) NULL ACTL7B 10880 genome.wustl.edu 37 9 111618158 111618158 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006686.3 -1 reviewed p.G18E 0.842 63 0% 74 20.3% 0 - probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL ACTL7A 10881 genome.wustl.edu 37 9 111625230 111625230 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006687.2 +1 reviewed p.G210R 1.000 97 0% 87 17.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain IKBKAP 8518 genome.wustl.edu 37 9 111655308 111655308 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003640.3 -1 reviewed p.N972 0.022 359 0.6% 160 21.2% 17 58.8% - - - NULL IKBKAP 8518 genome.wustl.edu 37 9 111679924 111679924 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003640.3 -1 reviewed p.T256I 1.000 514 0% 371 19.1% 11 54.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_IKI3,superfamily_Amine_DH_B_like FRRS1L 23732 genome.wustl.edu 37 9 111899813 111899813 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014334.2 -1 validated p.A319 1.000 226 0% 117 23.9% 0 - - - - NULL PTPN3 5774 genome.wustl.edu 37 9 112141791 112141791 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026918.1 -1 reviewed NULL 0.001 182 0% 94 31.9% 21 9.5% - - - - PTPN3 5774 genome.wustl.edu 37 9 112144049 112144049 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002829.3 -1 reviewed p.T849 0.097 284 0% 149 21.5% 23 73.9% - - - HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799 PTPN3 5774 genome.wustl.edu 37 9 112166753 112166753 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002829.3 -1 reviewed p.S643N 0.998 172 0% 97 15.5% 8 50% possibly_damaging(0.748) tolerated(0.05) deleterious(0.620) superfamily_SSF52799 PTPN3 5774 genome.wustl.edu 37 9 112172594 112172594 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002829.3 -1 reviewed p.G472D 0.973 139 0% 81 18.5% 9 88.8% probably_damaging(0.998) tolerated(0.38) deleterious(0.492) NULL PTPN3 5774 genome.wustl.edu 37 9 112182879 112182879 + Nonsense_Mutation SNP G G A rs185821807 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002829.3 -1 reviewed p.R380* 1.000 257 0% 110 22.7% 7 14.2% - - - NULL PALM2 114299 genome.wustl.edu 37 9 112705401 112705401 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053016.5 +1 validated p.T313I 1.000 235 0% 65 20% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Paralemmin PALM2-AKAP2 445815 genome.wustl.edu 37 9 112898915 112898915 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007203.4 +1 validated p.G364D 1.000 63 0% 40 20% 3 33.3% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL PALM2-AKAP2 445815 genome.wustl.edu 37 9 112899163 112899163 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007203.4 +1 validated p.L447 1.000 128 0% 90 22.2% 3 0% - - - NULL SVEP1 79987 genome.wustl.edu 37 9 113189931 113189931 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153366.3 -1 validated p.A1972V 0.999 184 0% 73 21.9% 0 - probably_damaging(0.991) tolerated(0.33) neutral(0.468) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SVEP1 79987 genome.wustl.edu 37 9 113196700 113196700 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153366.3 -1 validated p.D1659N 1.000 138 0% 76 19.7% 0 - probably_damaging(0.996) tolerated(0.07) deleterious(0.780) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SVEP1 79987 genome.wustl.edu 37 9 113217961 113217961 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153366.3 -1 validated p.I1232 0.051 146 0% 153 22.2% 0 - - - - HMMSmart_SM00179,PatternScan_EGF_CA,superfamily_EGF/Laminin MUSK 4593 genome.wustl.edu 37 9 113538102 113538102 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005592.3 +1 reviewed p.A407T 1.000 89 0% 64 25% 0 - benign(0.022) deleterious(0.03) neutral(0.365) HMMPfam_Fz LPAR1 1902 genome.wustl.edu 37 9 113704024 113704024 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001401.3 -1 reviewed p.T157I 1.000 231 0% 65 23.1% 14 50% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like KIAA0368 23392 genome.wustl.edu 37 9 114124416 114124416 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080398.1 -1 provisional p.C1983Y 1.000 252 0% 117 22.2% 110 33.6% benign(0.006) tolerated(0.13) neutral(0.253) NULL KIAA0368 23392 genome.wustl.edu 37 9 114138774 114138774 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080398.1 -1 provisional p.M1512I 1.000 322 0% 133 17.3% 38 42.1% benign(0.258) tolerated(0.53) neutral(0.035) superfamily_ARM repeat ZNF483 158399 genome.wustl.edu 37 9 114304187 114304187 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133464.2 +1 validated p.Y324* 0.871 148 0% 83 24.1% 0 - - - - NULL PTGR1 22949 genome.wustl.edu 37 9 114325494 114325494 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012212.3 -1 reviewed p.K299N 0.918 695 0.3% 330 21.2% 26 84.6% benign(0.004) tolerated(0.13) neutral(0.253) superfamily_GroES_like PTGR1 22949 genome.wustl.edu 37 9 114355217 114355217 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012212.3 -1 reviewed p.Q66H 0.103 175 0% 174 21.3% 38 94.7% possibly_damaging(0.73) tolerated(0.41) neutral(0.282) superfamily_GroES_like SUSD1 64420 genome.wustl.edu 37 9 114860860 114860860 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374263 -1 known p.P455L 0.003 322 0% 85 17.6% 3 66.6% possibly_damaging(0.877) deleterious(0) deleterious(0.786) NULL KIAA1958 158405 genome.wustl.edu 37 9 115421998 115421998 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133465.2 +1 predicted p.S600 0.990 133 0% 109 18.3% 2 0% - - - NULL ZFP37 7539 genome.wustl.edu 37 9 115805995 115805995 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003408.1 -1 provisional p.V301 0.981 497 0% 219 12.8% 3 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 FKBP15 23307 genome.wustl.edu 37 9 115928408 115928408 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015258.1 -1 validated p.P1204S 1.000 339 0% 243 20.6% 61 34.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FKBP15 23307 genome.wustl.edu 37 9 115931594 115931594 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015258.1 -1 validated p.T1132I 0.009 176 0% 143 16.8% 40 30% benign(0.147) deleterious(0.01) neutral(0.419) NULL PRPF4 9128 genome.wustl.edu 37 9 116038992 116038992 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004697.3 +1 provisional p.I65 1.000 356 0% 196 25.5% 12 83.3% - - - NULL C9orf43 257169 genome.wustl.edu 37 9 116190500 116190500 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152786.1 +1 predicted p.K368 0.052 293 0% 142 17.6% 1 0% - - - NULL ZNF618 114991 genome.wustl.edu 37 9 116770653 116770653 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133374.2 +1 validated p.R192W 1.000 181 0% 111 27.9% 10 20% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL ZNF618 114991 genome.wustl.edu 37 9 116811438 116811438 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133374.2 +1 validated p.C526Y 1.000 34 0% 21 19% 21 52.3% probably_damaging(0.992) tolerated(0.07) deleterious(0.766) NULL AMBP 259 genome.wustl.edu 37 9 116838933 116838933 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001633.3 -1 reviewed p.V69M 0.991 152 0% 138 23.2% 7 42.8% benign(0.021) tolerated(0.21) neutral(0.045) HMMPfam_Lipocalin,superfamily_Calycin KIF12 113220 genome.wustl.edu 37 9 116855707 116855707 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138424.1 -1 provisional p.A353T 0.003 96 0% 91 19.8% 164 47.5% benign(0) deleterious(0.04) neutral(0.349) NULL COL27A1 85301 genome.wustl.edu 37 9 116925056 116925056 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032888.2 +1 validated p.A42T 0.997 606 0% 624 14.3% 2 100% unknown(0) tolerated(0.22) - NULL COL27A1 85301 genome.wustl.edu 37 9 116930005 116930005 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032888.2 +1 validated p.T57M 0.212 33 0% 35 17.1% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00210 COL27A1 85301 genome.wustl.edu 37 9 117044584 117044584 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032888.2 +1 validated p.G1249C 1.000 157 0% 151 24.5% 7 57.1% unknown(0) deleterious(0) - HMMPfam_Collagen COL27A1 85301 genome.wustl.edu 37 9 117047007 117047007 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032888.2 +1 validated p.H1313Y 1.000 195 0% 208 25.5% 7 42.8% unknown(0) tolerated(0.47) - HMMPfam_Collagen COL27A1 85301 genome.wustl.edu 37 9 117071715 117071715 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032888.2 +1 validated p.A1798V 1.000 57 0% 49 18.4% 12 50% probably_damaging(0.998) tolerated(0.12) deleterious(0.735) HMMPfam_COLFI,HMMSmart_SM00038 ORM1 5004 genome.wustl.edu 37 9 117087354 117087354 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000607.2 +1 reviewed p.E154D 0.646 166 0% 132 14.4% 0 - benign(0.07) deleterious(0) neutral(0.450) HMMPfam_Lipocalin,superfamily_Calycin AKNA 80709 genome.wustl.edu 37 9 117099359 117099359 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030767.4 -1 validated p.S1432I 0.028 13 0% 26 30.8% 28 10.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL AKNA 80709 genome.wustl.edu 37 9 117129901 117129901 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030767.4 -1 validated p.N550 0.001 24 0% 32 21.9% 13 7.6% - - - NULL AKNA 80709 genome.wustl.edu 37 9 117130829 117130829 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030767.4 -1 validated p.T488M 0.000 189 0% 146 15.8% 17 0% benign(0.142) deleterious(0.01) neutral(0.418) NULL DFNB31 25861 genome.wustl.edu 37 9 117187368 117187368 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374059 -1 known p.S17Y 0.002 202 0% 102 23.5% 2 0% benign(0.052) deleterious(0) neutral(0.448) NULL DFNB31 25861 genome.wustl.edu 37 9 117240929 117240929 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015404.3 -1 reviewed p.P247 0.001 80 0% 48 14.6% 5 20% - - - NULL TNC 3371 genome.wustl.edu 37 9 117825309 117825309 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002160.2 -1 validated p.S1307T 0.995 97 0% 41 9.8% 8 0% benign(0) tolerated(0.33) neutral(0.024) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like TNC 3371 genome.wustl.edu 37 9 117825361 117825361 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002160.2 -1 validated p.V1290I 1.000 143 0% 65 24.6% 6 33.3% benign(0.002) tolerated(0.65) neutral(0.003) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like PAPPA 5069 genome.wustl.edu 37 9 118973953 118973953 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002581.3 +1 reviewed p.P554T 1.000 178 0% 39 15.4% 0 - probably_damaging(1) tolerated(0.68) deleterious(0.502) superfamily_SSF55486 PAPPA 5069 genome.wustl.edu 37 9 119109489 119109489 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002581.3 +1 reviewed e15+1 1.000 150 0% 58 25.9% 0 - - - - - ASTN2 23245 genome.wustl.edu 37 9 119202945 119202945 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198187.3 -1 reviewed p.S1242F 1.000 288 0% 171 24% 2 0% possibly_damaging(0.922) deleterious(0.02) deleterious(0.754) NULL TRIM32 22954 genome.wustl.edu 37 9 119460168 119460168 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099679.1 +1 reviewed p.E49 1.000 116 0% 99 24.2% 6 66.6% - - - HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 ASTN2 23245 genome.wustl.edu 37 9 119625911 119625911 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198187.3 -1 reviewed p.R664H 0.954 201 0% 89 11.2% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_EGF/Laminin ASTN2 23245 genome.wustl.edu 37 9 119770478 119770478 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198187.3 -1 reviewed p.A495D 1.000 212 0% 158 16.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL LOC389787 389787 genome.wustl.edu 37 9 120845155 120845155 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001725747.2 -1 model p.T135M 1.000 85 0% 33 15.2% 0 - - - - HMMPfam_TCTP,superfamily_Mss4-like DBC1 1620 genome.wustl.edu 37 9 122011301 122011301 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014618.2 -1 validated p.Q116* 1.000 300 0% 149 16.8% 0 - - - - HMMSmart_SM00457 CDK5RAP2 55755 genome.wustl.edu 37 9 123201918 123201918 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018249.4 -1 reviewed p.K1161E 0.647 300 0% 92 26.1% 11 63.6% probably_damaging(0.979) deleterious(0.01) deleterious(0.828) NULL CDK5RAP2 55755 genome.wustl.edu 37 9 123210353 123210353 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018249.4 -1 reviewed p.G949* 0.400 283 0.7% 78 17.9% 8 0% - - - NULL PSMD5 5711 genome.wustl.edu 37 9 123586940 123586940 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005047.2 -1 reviewed p.L280M 1.000 132 0% 83 18.1% 14 50% possibly_damaging(0.938) tolerated(0.23) neutral(0.425) superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB CNTRL 11064 genome.wustl.edu 37 9 123870165 123870165 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007018.4 +1 reviewed p.E298D 1.000 93 0% 63 12.7% 0 - probably_damaging(0.991) deleterious(0.02) deleterious(0.827) NULL CNTRL 11064 genome.wustl.edu 37 9 123935622 123935622 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007018.4 +1 reviewed p.K2173N 1.000 188 0% 51 21.6% 10 0% possibly_damaging(0.946) deleterious(0.05) deleterious(0.736) superfamily_tRNA-binding arm GSN 2934 genome.wustl.edu 37 9 124093786 124093786 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373807 +1 known p.V478M 0.000 107 0% 92 19.6% 0 - probably_damaging(0.983) - - HMMSmart_GEL DAB2IP 153090 genome.wustl.edu 37 9 124522492 124522492 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032552.2 +1 validated p.T287M 0.998 60 0% 38 13.2% 10 20% probably_damaging(0.963) tolerated(0.1) deleterious(0.692) superfamily_C2 domain (Calcium/lipid-binding domain CaLB) TTLL11 158135 genome.wustl.edu 37 9 124585110 124585110 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001139442.1 -1 validated p.R720M 1.000 28 0% 24 20.8% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL OR1J4 26219 genome.wustl.edu 37 9 125281425 125281425 + Missense_Mutation SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004452.1 +1 provisional p.K2N 0.000 267 0% 158 11.4% 0 - benign(0.001) tolerated(0.09) neutral(0.296) superfamily_Family A G protein-coupled receptor-like OR1B1 347169 genome.wustl.edu 37 9 125391659 125391659 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004450.1 -1 provisional p.S52 0.000 226 0% 71 22.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR1B1 347169 genome.wustl.edu 37 9 125391729 125391729 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004450.1 -1 provisional p.L29H 0.362 236 0% 94 22.3% 0 - possibly_damaging(0.805) deleterious(0) deleterious(0.748) superfamily_SSF81321 OR1L1 26737 genome.wustl.edu 37 9 125424780 125424780 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005236.3 +1 validated p.P312 0.041 300 0% 118 16.9% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR1L3 26735 genome.wustl.edu 37 9 125437493 125437493 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005234.1 +1 provisional p.A29T 0.265 260 0% 110 18.2% 0 - benign(0) tolerated(0.42) neutral(0.014) superfamily_Family A G protein-coupled receptor-like OR1L6 392390 genome.wustl.edu 37 9 125512030 125512030 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004453.2 +1 validated p.F4L 0.000 282 0% 163 25.2% 0 - benign(0.009) tolerated(0.27) neutral(0.034) NULL OR1L6 392390 genome.wustl.edu 37 9 125512206 125512206 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004453.2 +1 validated p.P63H 0.088 732 0.1% 345 22% 0 - probably_damaging(1) tolerated(0.11) deleterious(0.772) superfamily_SSF81321 OR1K1 392392 genome.wustl.edu 37 9 125562739 125562739 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080859.1 +1 provisional p.S113N 0.008 113 0% 66 19.7% 1 0% possibly_damaging(0.678) tolerated(0.78) neutral(0.242) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PDCL 5082 genome.wustl.edu 37 9 125582648 125582648 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005388.3 -1 reviewed p.E208* 0.990 171 0% 105 27.6% 24 25% - - - HMMPfam_Phosducin,superfamily_Thioredoxin-like ZBTB6 10773 genome.wustl.edu 37 9 125673604 125673604 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006626.4 -1 provisional p.E250* 1.000 282 0% 243 29.2% 2 50% - - - NULL ZBTB26 57684 genome.wustl.edu 37 9 125681212 125681212 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020924.2 -1 provisional p.T334 1.000 110 0% 73 23.3% 2 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 RABGAP1 23637 genome.wustl.edu 37 9 125746935 125746935 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012197.3 +1 validated p.P108T 1.000 208 0% 53 17% 6 100% possibly_damaging(0.842) deleterious(0) deleterious(0.766) NULL GPR21 2844 genome.wustl.edu 37 9 125797612 125797612 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005294.1 +1 provisional p.R256Q 1.000 143 0% 58 25.9% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CRB2 286204 genome.wustl.edu 37 9 126133184 126133184 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173689.5 +1 validated p.G618W 1.000 94 0% 101 19.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases DENND1A 57706 genome.wustl.edu 37 9 126146038 126146038 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020946.1 -1 validated p.L578M 1.000 47 0% 59 22% 7 57.1% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL GPR144 347088 genome.wustl.edu 37 9 127230869 127230869 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000334810 +1 known p.E742D 1.000 139 0% 138 16.7% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_7tm_2 NR5A1 2516 genome.wustl.edu 37 9 127262767 127262767 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004959.4 -1 reviewed p.A158T 0.153 18 0% 16 43.8% 0 - possibly_damaging(0.753) tolerated(0.76) neutral(0.278) superfamily_Nuclear receptor ligand-binding domain WDR38 401551 genome.wustl.edu 37 9 127618189 127618189 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001045476.1 +1 provisional p.Q119H 0.680 186 0% 224 15.6% 5 20% possibly_damaging(0.91) tolerated(0.56) neutral(0.369) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 WDR38 401551 genome.wustl.edu 37 9 127618586 127618586 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001045476.1 +1 provisional p.T158M 0.020 49 0% 88 22.7% 2 0% possibly_damaging(0.742) deleterious(0) deleterious(0.717) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 SCAI 286205 genome.wustl.edu 37 9 127781108 127781108 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173690.4 -1 reviewed p.D300 1.000 192 0% 126 22.2% 1 0% - - - NULL PPP6C 5537 genome.wustl.edu 37 9 127912158 127912158 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123355.1 -1 reviewed p.Q275K 1.000 407 0.2% 328 22.3% 84 39.2% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300 RABEPK 10244 genome.wustl.edu 37 9 127969873 127969873 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005833.3 +1 validated p.P28 1.000 206 0% 150 22% 62 43.5% - - - superfamily_Galactose oxidase central domain GAPVD1 26130 genome.wustl.edu 37 9 128083795 128083795 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431329 +1 known p.P425L 1.000 376 0% 318 22.6% 4 25% - - - NULL GAPVD1 26130 genome.wustl.edu 37 9 128116984 128116984 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015635.2 +1 validated p.Q1234H 1.000 218 0% 76 22.4% 21 33.3% probably_damaging(0.973) deleterious(0.01) deleterious(0.821) NULL GAPVD1 26130 genome.wustl.edu 37 9 128118025 128118025 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438537 +1 known p.R13* 1.000 132 0% 47 17% 16 31.2% - - - NULL PBX3 5090 genome.wustl.edu 37 9 128677963 128677963 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006195.5 +1 validated e3-2 1.000 83 0% 48 31.2% 0 - - - - - PBX3 5090 genome.wustl.edu 37 9 128697815 128697815 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006195.5 +1 validated p.L258I 1.000 314 0% 147 19% 6 0% benign(0.312) tolerated(0.19) neutral(0.147) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like LMX1B 4010 genome.wustl.edu 37 9 129376791 129376791 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373474 +1 known p.C21 0.995 16 0% 12 33.3% 0 - - - - NULL LMX1B 4010 genome.wustl.edu 37 9 129377800 129377800 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002316.3 +1 reviewed p.S70N 1.000 70 0% 89 20.2% 1 100% probably_damaging(0.974) deleterious(0.01) deleterious(0.822) HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain) LMX1B 4010 genome.wustl.edu 37 9 129453251 129453251 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002316.3 +1 reviewed p.E132K 1.000 46 0% 46 39.1% 0 - possibly_damaging(0.804) tolerated(0.09) deleterious(0.599) HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain) LMX1B 4010 genome.wustl.edu 37 9 129458715 129458715 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002316.3 +1 reviewed p.S368 1.000 56 0% 74 20.3% 0 - - - - NULL ZBTB34 403341 genome.wustl.edu 37 9 129642168 129642168 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099270.1 +1 validated p.P160S 1.000 80 0% 46 26.1% 0 - probably_damaging(0.998) tolerated(0.14) deleterious(0.724) NULL ZBTB34 403341 genome.wustl.edu 37 9 129642338 129642338 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099270.1 +1 validated p.E216D 1.000 325 0.3% 101 29.7% 1 0% probably_damaging(0.973) tolerated(0.22) neutral(0.457) NULL ZBTB34 403341 genome.wustl.edu 37 9 129642907 129642907 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099270.1 +1 validated p.G406V 1.000 242 0% 90 16.7% 4 75% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RALGPS1 9649 genome.wustl.edu 37 9 129831610 129831610 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014636.1 +1 provisional p.K195N 1.000 378 0% 140 17.9% 3 100% possibly_damaging(0.804) tolerated(0.15) deleterious(0.543) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF GARNL3 84253 genome.wustl.edu 37 9 130152985 130152985 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032293.4 +1 validated p.R937W 0.973 163 0% 129 20.2% 1 0% possibly_damaging(0.926) deleterious(0) deleterious(0.819) NULL ZNF79 7633 genome.wustl.edu 37 9 130206323 130206323 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007135.2 +1 validated p.S115Y 0.000 103 0% 67 34.3% 3 66.6% possibly_damaging(0.922) deleterious(0.04) deleterious(0.720) NULL FAM129B 64855 genome.wustl.edu 37 9 130270806 130270806 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022833.2 -1 validated p.N443 0.516 80 0% 92 14.1% 180 25.5% - - - NULL FAM129B 64855 genome.wustl.edu 37 9 130279436 130279436 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022833.2 -1 validated p.P255 0.293 35 0% 36 44.4% 116 33.6% - - - NULL STXBP1 6812 genome.wustl.edu 37 9 130435537 130435537 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003165.3 +1 reviewed p.E369D 0.615 243 0.4% 124 21.8% 7 28.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins TTC16 158248 genome.wustl.edu 37 9 130491891 130491891 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144965.1 +1 provisional p.V599A 0.000 190 0% 170 17.6% 0 - benign(0.253) tolerated(0.36) neutral(0.046) NULL ENG 2022 genome.wustl.edu 37 9 130578223 130578223 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114753.1 -1 reviewed p.T617 0.999 29 0% 38 31.6% 104 9.6% - - - NULL ENG 2022 genome.wustl.edu 37 9 130578279 130578279 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114753.1 -1 reviewed p.A599T 1.000 34 0% 57 14% 168 11.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PIP5KL1 138429 genome.wustl.edu 37 9 130687415 130687415 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135219.1 -1 validated p.P296 0.007 87 0% 119 22.7% 4 0% - - - HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like PIP5KL1 138429 genome.wustl.edu 37 9 130692024 130692024 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135219.1 -1 validated p.C57 0.895 72 0% 64 28.1% 0 - - - - superfamily_SAICAR synthase-like FAM102A 399665 genome.wustl.edu 37 9 130706948 130706948 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035254.2 -1 validated p.L352P 1.000 27 0% 27 14.8% 27 7.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NAIF1 203245 genome.wustl.edu 37 9 130829154 130829154 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_197956.3 -1 validated p.K76M 1.000 23 0% 16 25% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC25A25 114789 genome.wustl.edu 37 9 130868109 130868109 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006641.1 +1 validated p.N283 0.143 74 0% 80 13.8% 5 20% - - - superfamily_Mitoch_carrier,HMMPfam_Mito_carr CIZ1 25792 genome.wustl.edu 37 9 130931723 130931723 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001131016.1 -1 validated p.H703Y 1.000 486 0% 391 12% 125 18.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_ZnF_U1,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 DNM1 1759 genome.wustl.edu 37 9 130982568 130982568 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004408.2 +1 reviewed p.R266H 1.000 165 0% 161 13.7% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Dynamin_M,superfamily_P-loop containing nucleoside triphosphate hydrolases GOLGA2 2801 genome.wustl.edu 37 9 131020167 131020167 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004486.4 -1 reviewed p.R811H 0.728 234 0% 249 23.7% 30 46.6% benign(0.15) deleterious(0.01) neutral(0.419) NULL SLC27A4 10999 genome.wustl.edu 37 9 131107689 131107689 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005094.3 +1 reviewed p.F139 0.591 29 0% 62 17.7% 14 14.2% - - - HMMPfam_AMP-binding,PatternScan_LIPOCALIN,superfamily_Acetyl-CoA synthetase-like CERCAM 51148 genome.wustl.edu 37 9 131191047 131191047 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016174.4 +1 validated p.R300C 1.000 56 0% 39 17.9% 14 57.1% possibly_damaging(0.444) deleterious(0.01) deleterious(0.550) NULL CERCAM 51148 genome.wustl.edu 37 9 131198061 131198061 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016174.4 +1 validated p.W555* 1.000 18 0% 17 41.2% 29 3.4% - - - NULL ODF2 4957 genome.wustl.edu 37 9 131222848 131222848 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002540.3 +1 reviewed p.R4H 1.000 408 0% 319 22.6% 25 48% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ODF2 4957 genome.wustl.edu 37 9 131223220 131223220 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002540.3 +1 reviewed e2-1 1.000 259 0% 242 24.4% 0 - - - - - ODF2 4957 genome.wustl.edu 37 9 131247129 131247129 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002540.3 +1 reviewed p.E394 0.958 215 0% 106 26.4% 28 42.8% - - - NULL ODF2 4957 genome.wustl.edu 37 9 131262353 131262353 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002540.3 +1 reviewed p.R746H 1.000 115 0% 133 25.6% 58 25.8% possibly_damaging(0.704) deleterious(0.01) deleterious(0.659) NULL SPTAN1 6709 genome.wustl.edu 37 9 131345429 131345429 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130438.1 +1 validated p.R627Q 1.000 265 0% 94 25.5% 14 21.4% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin SPTAN1 6709 genome.wustl.edu 37 9 131389750 131389750 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130438.1 +1 validated p.A2221V 1.000 13 0% 16 37.5% 119 25.2% benign(0.258) tolerated(0.11) neutral(0.299) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin WDR34 89891 genome.wustl.edu 37 9 131398650 131398650 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052844.3 -1 validated p.L205M 0.986 62 0% 27 22.2% 249 48.5% possibly_damaging(0.929) tolerated(0.1) deleterious(0.662) superfamily_WD40_like WDR34 89891 genome.wustl.edu 37 9 131398669 131398669 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052844.3 -1 validated p.W198C 1.000 71 0% 36 16.7% 256 48.4% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40_like CCBL1 883 genome.wustl.edu 37 9 131600355 131600355 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122671.1 -1 reviewed p.R138H 0.018 270 0% 201 19.4% 7 71.4% benign(0.002) tolerated(0.16) neutral(0.059) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases PHYHD1 254295 genome.wustl.edu 37 9 131696317 131696317 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174933.3 +1 validated p.S99F 0.998 284 0.4% 220 10.9% 12 0% benign(0.339) deleterious(0) deleterious(0.551) HMMPfam_PhyH NUP188 23511 genome.wustl.edu 37 9 131741549 131741549 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015354.1 +1 validated p.I404 0.740 292 0% 148 22.3% 15 53.3% - - - HMMPfam_Nup188 SH3GLB2 56904 genome.wustl.edu 37 9 131772137 131772137 + Missense_Mutation SNP C C T rs112735794 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020145.2 -1 provisional p.R251H 1.000 62 0% 82 25.6% 97 21.6% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_BAR,HMMSmart_SM00721 SH3GLB2 56904 genome.wustl.edu 37 9 131772973 131772973 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020145.2 -1 provisional e7-1 1.000 152 0% 119 27.7% 9 33.3% - - - - CRAT 1384 genome.wustl.edu 37 9 131857884 131857884 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000755.3 -1 reviewed p.A558V 1.000 32 0% 44 18.2% 53 47.1% possibly_damaging(0.437) tolerated(0.18) neutral(0.198) HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases METTL11A 28989 genome.wustl.edu 37 9 132395013 132395013 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014064.2 +1 validated p.Q11* 0.979 264 0% 246 15.9% 117 47.8% - - - HMMPfam_DUF858 METTL11A 28989 genome.wustl.edu 37 9 132397544 132397544 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014064.2 +1 validated p.R158H 1.000 30 3.3% 37 18.9% 225 52% unknown(0) - - HMMPfam_DUF858,superfamily_SSF53335 METTL11A 28989 genome.wustl.edu 37 9 132397561 132397561 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014064.2 +1 validated p.V164I 0.983 39 0% 51 9.8% 233 33.4% benign(0.006) tolerated(0.36) neutral(0.020) HMMPfam_DUF858,superfamily_SSF53335 C9orf78 51759 genome.wustl.edu 37 9 132591484 132591484 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016520.2 -1 validated p.R260W 0.974 193 0% 266 16.2% 84 20.2% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL FUBP3 8939 genome.wustl.edu 37 9 133506950 133506950 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003934.1 +1 validated p.N429D 0.580 139 0% 157 21% 37 51.3% benign(0) tolerated(0.24) neutral(0.037) superfamily_Eukaryotic type KH-domain (KH-domain type I) QRFP 347148 genome.wustl.edu 37 9 133768931 133768931 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198180.1 -1 validated p.G99S 0.000 31 0% 27 37% 1 0% benign(0.004) tolerated(0.22) neutral(0.042) NULL FIBCD1 84929 genome.wustl.edu 37 9 133780651 133780651 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145106.1 -1 validated p.L366F 0.993 55 0% 78 15.4% 0 - possibly_damaging(0.732) deleterious(0) deleterious(0.712) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like PRRC2B 84726 genome.wustl.edu 37 9 134308162 134308162 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013318.3 +1 validated p.D92N 1.000 465 0% 272 18% 9 55.5% probably_damaging(0.986) deleterious(0.04) deleterious(0.783) HMMPfam_BAT2_N PRRC2B 84726 genome.wustl.edu 37 9 134351347 134351347 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451855 +1 known p.G11R 0.998 72 0% 79 24.1% 10 30% - - - NULL PRRC2B 84726 genome.wustl.edu 37 9 134363327 134363327 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000320547 +1 known p.G30S 0.691 81 0% 74 13.5% 50 12% - - - NULL UCK1 83549 genome.wustl.edu 37 9 134404648 134404648 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031432.2 -1 validated p.E125 1.000 48 0% 86 27.9% 48 45.8% - - - HMMPfam_PRK,superfamily_SSF52540 RAPGEF1 2889 genome.wustl.edu 37 9 134465325 134465325 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198679.1 -1 reviewed p.R771C 1.000 201 0% 158 12.7% 16 6.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF RAPGEF1 2889 genome.wustl.edu 37 9 134514062 134514062 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198679.1 -1 reviewed p.T205N 0.395 254 0% 132 25% 21 33.3% possibly_damaging(0.741) tolerated(0.29) neutral(0.301) NULL MED27 9442 genome.wustl.edu 37 9 134814829 134814829 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004269.2 -1 reviewed p.R171K 1.000 354 0% 119 20.2% 21 23.8% probably_damaging(0.987) tolerated(0.07) deleterious(0.756) NULL SETX 23064 genome.wustl.edu 37 9 135173510 135173510 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015046.5 -1 reviewed p.D1913V 1.000 346 0% 155 20% 12 50% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL SETX 23064 genome.wustl.edu 37 9 135203494 135203494 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015046.5 -1 reviewed p.R1164Q 0.040 186 0.5% 111 20.7% 0 - benign(0.015) deleterious(0) neutral(0.445) NULL SETX 23064 genome.wustl.edu 37 9 135203908 135203908 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015046.5 -1 reviewed p.R1026I 0.000 406 0.2% 151 28.5% 2 0% benign(0.163) tolerated(0.06) neutral(0.337) NULL SETX 23064 genome.wustl.edu 37 9 135204607 135204607 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015046.5 -1 reviewed p.H793R 0.907 336 0% 164 18.9% 1 0% benign(0.002) deleterious(0) neutral(0.445) NULL BARHL1 56751 genome.wustl.edu 37 9 135458442 135458442 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020064.3 +1 validated p.P86 0.989 27 0% 25 24% 0 - - - - NULL BARHL1 56751 genome.wustl.edu 37 9 135458627 135458627 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020064.3 +1 validated p.A148V 0.994 32 0% 36 13.9% 0 - benign(0.007) tolerated(0.08) neutral(0.300) NULL DDX31 64794 genome.wustl.edu 37 9 135470283 135470283 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022779.7 -1 reviewed p.Q842 0.001 191 0% 251 23.5% 12 41.6% - - - NULL DDX31 64794 genome.wustl.edu 37 9 135487510 135487510 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022779.7 -1 reviewed p.A758D 0.009 274 0% 120 24.2% 22 36.3% possibly_damaging(0.861) tolerated(0.28) neutral(0.365) NULL GTF3C4 9329 genome.wustl.edu 37 9 135554297 135554297 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012204.2 +1 validated p.A431T 0.996 208 0% 155 18.1% 5 20% possibly_damaging(0.882) tolerated(0.29) neutral(0.373) NULL C9orf9 11092 genome.wustl.edu 37 9 135759354 135759354 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018956.3 +1 provisional p.S7F 0.007 144 0% 92 23.9% 19 57.8% benign(0.002) deleterious(0.03) neutral(0.364) NULL TSC1 7248 genome.wustl.edu 37 9 135798749 135798749 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000368.4 -1 reviewed p.C165Y 1.000 297 0% 130 25.4% 2 100% probably_damaging(0.986) tolerated(0.55) neutral(0.442) HMMPfam_Hamartin CEL 1056 genome.wustl.edu 37 9 135946543 135946543 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001807.3 +1 reviewed p.V555M 0.288 56 0% 80 16.3% 0 - possibly_damaging(0.713) tolerated(0.1) deleterious(0.544) superfamily_alpha/beta-Hydrolases CEL 1056 genome.wustl.edu 37 9 135947032 135947032 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001807.3 +1 reviewed p.P718S 0.024 10 0% 17 29.4% 0 - possibly_damaging(0.894) deleterious(0) deleterious(0.796) NULL RALGDS 5900 genome.wustl.edu 37 9 135979661 135979661 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006266.2 -1 validated p.P554S 0.719 197 0% 239 20.5% 35 31.4% benign(0.221) tolerated(0.19) neutral(0.072) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF GBGT1 26301 genome.wustl.edu 37 9 136029216 136029216 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000372043 -1 known p.S258Y 0.967 99 0% 93 25.8% 1 0% unknown(0) - - HMMPfam_Glyco_transf_6 LCN1P1 286310 genome.wustl.edu 37 9 136102216 136102216 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_017747.3 -1 model NULL 0.002 49 0% 76 18.4% 0 - - - - - SURF6 6838 genome.wustl.edu 37 9 136201359 136201359 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006753.4 -1 reviewed p.R58Q 0.000 322 0% 513 20.7% 23 43.4% benign(0.002) tolerated(0.92) - NULL C9orf96 169436 genome.wustl.edu 37 9 136249639 136249639 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153710.3 +1 validated e3-1 1.000 388 0% 370 13.5% 2 0% - - - - C9orf96 169436 genome.wustl.edu 37 9 136265601 136265601 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153710.3 +1 validated p.R381M 0.001 90 1.1% 112 12.5% 0 - unknown(0) - - superfamily_ARM repeat C9orf96 169436 genome.wustl.edu 37 9 136270545 136270545 + Nonstop_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153710.3 +1 validated p.*681Y 0.000 55 0% 44 25% 0 - - - - NULL REXO4 57109 genome.wustl.edu 37 9 136279820 136279820 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000371935 -1 known p.G120E 1.000 369 0.3% 404 24% 41 48.7% unknown(0) deleterious(0.02) - NULL REXO4 57109 genome.wustl.edu 37 9 136282813 136282813 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020385.2 -1 validated p.S51I 0.000 248 0% 333 24.6% 13 38.4% benign(0.184) tolerated(0.14) neutral(0.267) NULL ADAMTS13 11093 genome.wustl.edu 37 9 136305568 136305568 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139025.3 +1 reviewed p.V630 0.594 50 0% 62 21% 5 20% - - - NULL CACFD1 11094 genome.wustl.edu 37 9 136325263 136325263 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017586.2 +1 validated p.W25* 1.000 64 0% 24 16.7% 7 14.2% - - - HMMPfam_Cg6151-P SARDH 1757 genome.wustl.edu 37 9 136531968 136531968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134707.1 -1 reviewed p.E840D 1.000 97 0% 73 20.5% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GCV_T_C,superfamily_SSF101790 SARDH 1757 genome.wustl.edu 37 9 136577769 136577769 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134707.1 -1 reviewed p.E434* 1.000 50 0% 55 16.4% 1 0% - - - superfamily_SSF51905 BRD3 8019 genome.wustl.edu 37 9 136910508 136910508 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007371.3 -1 reviewed p.Q374H 1.000 124 0% 92 18.5% 18 44.4% probably_damaging(0.998) tolerated(0.09) deleterious(0.771) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1 BRD3 8019 genome.wustl.edu 37 9 136913283 136913283 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007371.3 -1 reviewed p.K336 1.000 66 0% 61 18% 25 44% - - - HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1 BRD3 8019 genome.wustl.edu 37 9 136913406 136913406 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007371.3 -1 reviewed p.D295 0.972 76 1.3% 56 32.1% 11 54.5% - - - superfamily_Bromodomain RXRA 6256 genome.wustl.edu 37 9 137325971 137325971 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002957.4 +1 reviewed p.A387S 0.641 78 0% 60 16.7% 46 45.6% benign(0) tolerated(0.98) - HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain COL5A1 1289 genome.wustl.edu 37 9 137582769 137582769 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000093.3 +1 reviewed p.D41Y 1.000 134 0% 91 28.6% 3 0% unknown(0) deleterious(0) - HMMSmart_TSPN COL5A1 1289 genome.wustl.edu 37 9 137622081 137622081 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000093.3 +1 reviewed e7-1 0.998 47 0% 47 21.3% 0 - - - - - COL5A1 1289 genome.wustl.edu 37 9 137630649 137630649 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000093.3 +1 reviewed p.E497* 1.000 139 0% 147 21.8% 4 0% - - - HMMPfam_Collagen COL5A1 1289 genome.wustl.edu 37 9 137687142 137687142 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000093.3 +1 reviewed p.T927I 1.000 122 0% 171 27.5% 9 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Collagen FCN2 2220 genome.wustl.edu 37 9 137772710 137772710 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004108.2 +1 reviewed p.L15M 0.002 76 0% 60 28.3% 0 - benign(0.019) tolerated(0.08) neutral(0.301) NULL FCN2 2220 genome.wustl.edu 37 9 137777091 137777091 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004108.2 +1 reviewed p.R103H 0.005 75 0% 72 19.4% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like FCN2 2220 genome.wustl.edu 37 9 137777172 137777172 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004108.2 +1 reviewed p.T130N 0.004 60 0% 66 18.2% 1 0% possibly_damaging(0.93) tolerated(0.5) neutral(0.387) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like FCN1 2219 genome.wustl.edu 37 9 137804989 137804989 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002003.3 -1 reviewed p.G114D 0.209 74 0% 59 18.6% 6 0% possibly_damaging(0.921) deleterious(0.03) deleterious(0.736) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like OLFM1 10439 genome.wustl.edu 37 9 138011410 138011410 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014279.4 +1 validated p.D264N 1.000 185 0% 117 23.1% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_OLF,HMMSmart_OLF PPP1R26 9858 genome.wustl.edu 37 9 138377451 138377451 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014811.3 +1 validated p.D365 0.910 35 0% 30 30% 14 35.7% - - - NULL PPP1R26 9858 genome.wustl.edu 37 9 138378672 138378672 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014811.3 +1 validated p.V772 0.000 24 0% 20 20% 23 43.4% - - - NULL MRPS2 51116 genome.wustl.edu 37 9 138395784 138395784 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016034.3 +1 reviewed p.I232 1.000 86 0% 105 19% 156 42.9% - - - HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2 KCNT1 57582 genome.wustl.edu 37 9 138657519 138657519 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020822.2 +1 validated p.R417H 1.000 40 0% 58 17.2% 0 - possibly_damaging(0.921) tolerated(0.07) deleterious(0.690) NULL KCNT1 57582 genome.wustl.edu 37 9 138662716 138662716 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020822.2 +1 validated p.L595I 1.000 46 0% 54 25.9% 0 - probably_damaging(0.97) deleterious(0) deleterious(0.857) HMMPfam_BK_channel_a,superfamily_NAD(P)-bd KCNT1 57582 genome.wustl.edu 37 9 138675962 138675962 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020822.2 +1 validated p.L978 1.000 61 0% 62 14.5% 0 - - - - NULL CAMSAP1 157922 genome.wustl.edu 37 9 138709867 138709867 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015447.3 -1 validated p.T1409 0.114 27 0% 31 22.6% 16 68.7% - - - NULL CAMSAP1 157922 genome.wustl.edu 37 9 138713830 138713830 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015447.3 -1 validated p.E893K 1.000 27 3.7% 35 20% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CAMSAP1 157922 genome.wustl.edu 37 9 138714520 138714520 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015447.3 -1 validated p.D663N 0.001 123 0% 120 18.3% 8 62.5% benign(0.273) tolerated(0.08) neutral(0.329) NULL CAMSAP1 157922 genome.wustl.edu 37 9 138714914 138714914 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015447.3 -1 validated p.S531 1.000 467 0% 414 22.7% 2 100% - - - NULL UBAC1 10422 genome.wustl.edu 37 9 138830126 138830126 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016172.2 -1 validated p.Q348H 0.998 147 0% 152 13.8% 114 20.1% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL LHX3 8022 genome.wustl.edu 37 9 139091536 139091536 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014564.2 -1 reviewed p.A153T 0.997 19 0% 35 31.4% 0 - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_LIM,superfamily_Homeodomain-like LHX3 8022 genome.wustl.edu 37 9 139092439 139092439 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014564.2 -1 reviewed p.D85 0.939 54 0% 73 16.4% 0 - - - - HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain) QSOX2 169714 genome.wustl.edu 37 9 139110587 139110587 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181701.3 -1 validated p.H342Y 0.997 62 0% 67 29.9% 14 28.5% probably_damaging(0.994) tolerated(0.39) neutral(0.468) NULL SNAPC4 6621 genome.wustl.edu 37 9 139275262 139275262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003086.2 -1 validated p.R810Q 0.518 25 0% 36 13.9% 5 40% possibly_damaging(0.914) tolerated(0.2) neutral(0.415) NULL SNAPC4 6621 genome.wustl.edu 37 9 139276733 139276733 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003086.2 -1 validated p.A680V 0.001 26 0% 46 19.6% 3 100% benign(0.032) deleterious(0.01) neutral(0.407) NULL SNAPC4 6621 genome.wustl.edu 37 9 139290216 139290216 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003086.2 -1 validated p.E62* 0.751 102 0% 124 21% 4 25% - - - NULL SDCCAG3 10807 genome.wustl.edu 37 9 139301683 139301683 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039707.1 -1 validated p.A245T 0.001 58 0% 78 24.4% 41 43.9% benign(0.001) tolerated(0.28) neutral(0.032) NULL SDCCAG3 10807 genome.wustl.edu 37 9 139304577 139304577 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039707.1 -1 validated p.V62A 1.000 47 0% 53 15.1% 8 62.5% possibly_damaging(0.574) - - NULL SEC16A 9919 genome.wustl.edu 37 9 139360538 139360538 + Silent SNP C C T rs185542947 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433860 -1 known p.A90T 0.002 38 0% 60 20% 11 72.7% - - - NULL NOTCH1 4851 genome.wustl.edu 37 9 139391124 139391124 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017617.3 -1 reviewed p.A2356V 0.117 68 0% 61 18% 21 23.8% benign(0.022) tolerated(0.11) neutral(0.273) NULL NOTCH1 4851 genome.wustl.edu 37 9 139401758 139401758 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017617.3 -1 reviewed p.Q1214H 1.000 29 0% 38 26.3% 5 20% probably_damaging(0.999) tolerated(0.48) deleterious(0.501) HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,superfamily_SSF57196 NOTCH1 4851 genome.wustl.edu 37 9 139407897 139407897 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017617.3 -1 reviewed p.T767I 1.000 94 0% 119 21% 10 10% possibly_damaging(0.736) tolerated(0.09) deleterious(0.566) HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196 NOTCH1 4851 genome.wustl.edu 37 9 139410110 139410110 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017617.3 -1 reviewed p.H576 1.000 62 0% 46 26.1% 6 33.3% - - - HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196 NOTCH1 4851 genome.wustl.edu 37 9 139417387 139417387 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017617.3 -1 reviewed p.Y219 0.567 15 0.000 9 0.444 0 - - - - superfamily_SSF57196 NOTCH1 4851 genome.wustl.edu 37 9 139438554 139438554 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017617.3 -1 reviewed p.G21V 0.995 39 0% 35 17.1% 0 - probably_damaging(0.992) deleterious(0.03) deleterious(0.812) NULL AGPAT2 10555 genome.wustl.edu 37 9 139571488 139571488 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006412.3 -1 reviewed p.F139L 1.000 60 0% 58 24.1% 164 38.4% benign(0) tolerated(0.06) neutral(0.323) HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase FAM69B 138311 genome.wustl.edu 37 9 139616614 139616614 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152421.3 +1 validated p.I115T 1.000 80 0% 77 28.6% 37 16.2% possibly_damaging(0.952) deleterious(0.01) deleterious(0.801) NULL TMEM141 85014 genome.wustl.edu 37 9 139686453 139686453 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032928.3 +1 validated p.P59H 0.850 140 0% 159 25.2% 125 40.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL LOC100131193 100131193 genome.wustl.edu 37 9 139699092 139699092 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024580.1 -1 predicted NULL 0.000 82 0% 66 21.2% 1 0% - - - - LOC100131193 100131193 genome.wustl.edu 37 9 139699691 139699691 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024580.1 -1 predicted NULL 0.001 26 0% 24 16.7% 1 0% - - - - KIAA1984 84960 genome.wustl.edu 37 9 139701256 139701256 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039374.4 +1 validated p.A442 0.006 37 0% 70 17.1% 3 33.3% - - - NULL MAMDC4 158056 genome.wustl.edu 37 9 139750252 139750252 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206920.2 +1 validated p.R514W 0.020 19 0% 24 50% 0 - possibly_damaging(0.825) tolerated(0.11) deleterious(0.584) HMMPfam_MAM MAMDC4 158056 genome.wustl.edu 37 9 139754400 139754400 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206920.2 +1 validated p.L1086F 0.876 92 0% 152 22.4% 4 25% benign(0.002) tolerated(0.48) neutral(0.011) NULL TRAF2 7186 genome.wustl.edu 37 9 139818384 139818384 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021138.3 +1 reviewed p.L407M 1.000 98 0% 85 30.6% 48 45.8% benign(0.045) deleterious(0.01) neutral(0.408) HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like C8G 733 genome.wustl.edu 37 9 139840170 139840170 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000606.2 +1 validated p.L75M 0.000 35 0% 44 11.4% 5 40% benign(0.177) tolerated(0.16) neutral(0.076) HMMPfam_Lipocalin,superfamily_Calycin CLIC3 9022 genome.wustl.edu 37 9 139889673 139889673 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004669.2 -1 reviewed p.A114V 0.914 66 0% 54 18.5% 30 16.6% benign(0.093) deleterious(0.03) neutral(0.371) superfamily_GST_C_like ABCA2 20 genome.wustl.edu 37 9 139907938 139907938 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212533.2 -1 reviewed p.A1539T 1.000 78 0% 63 30.2% 11 45.4% benign(0.078) tolerated(0.26) neutral(0.040) NULL ABCA2 20 genome.wustl.edu 37 9 139910828 139910828 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000479446 -1 known p.W356* 1.000 131 0% 165 21.2% 10 40% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA2 20 genome.wustl.edu 37 9 139916884 139916884 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212533.2 -1 reviewed p.L192 0.032 42 0% 45 15.6% 3 0% - - - NULL ABCA2 20 genome.wustl.edu 37 9 139917188 139917188 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212533.2 -1 reviewed p.P165 0.000 25 0% 25 24% 4 25% - - - NULL GRIN1 2902 genome.wustl.edu 37 9 140059747 140059747 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007327.3 +1 reviewed p.T900M 1.000 64 0% 62 24.2% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL ANAPC2 29882 genome.wustl.edu 37 9 140076277 140076277 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013366.3 -1 reviewed p.L442 1.000 23 0% 45 15.6% 31 38.7% - - - HMMPfam_Cullin ANAPC2 29882 genome.wustl.edu 37 9 140077668 140077668 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013366.3 -1 reviewed p.L399I 1.000 45 0% 56 14.3% 53 41.5% benign(0.043) tolerated(0.11) neutral(0.274) HMMPfam_Cullin ANAPC2 29882 genome.wustl.edu 37 9 140079394 140079394 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013366.3 -1 reviewed p.R340H 1.000 47 0% 53 22.6% 36 36.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Cullin ANAPC2 29882 genome.wustl.edu 37 9 140082279 140082279 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013366.3 -1 reviewed p.L132M 0.997 138 0% 163 22.7% 22 50% possibly_damaging(0.544) tolerated(0.19) neutral(0.234) NULL TPRN 286262 genome.wustl.edu 37 9 140093552 140093552 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173691.3 -1 validated p.L477M 0.015 82 0% 111 29.7% 51 49% possibly_damaging(0.928) tolerated(0.16) neutral(0.435) NULL NDOR1 27158 genome.wustl.edu 37 9 140108704 140108704 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144026.1 +1 reviewed p.T187 0.000 108 0% 139 18% 5 40% - - - NULL NDOR1 27158 genome.wustl.edu 37 9 140108829 140108829 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144026.1 +1 reviewed p.R229Q 0.997 218 0.5% 247 23.1% 14 57.1% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMPfam_FAD_binding_1,superfamily_Riboflavin_synthase_like_b-brl C9orf169 375791 genome.wustl.edu 37 9 140120100 140120100 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199001.2 +1 validated p.K9N 1.000 44 0% 41 29.3% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_DUF2477 SLC34A3 142680 genome.wustl.edu 37 9 140127500 140127500 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080877.2 +1 reviewed p.V165I 1.000 43 0% 69 17.4% 0 - benign(0.084) tolerated(1) neutral(0.006) HMMPfam_Na_Pi_cotrans FAM166A 401565 genome.wustl.edu 37 9 140139867 140139867 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001710.1 -1 predicted p.P138 0.040 192 0% 248 29% 0 - - - - NULL C9orf173 441476 genome.wustl.edu 37 9 140146894 140146894 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004353.2 +1 validated p.G137S 0.980 50 0% 97 23.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL COBRA1 25920 genome.wustl.edu 37 9 140161501 140161501 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015456.3 +1 validated p.V401F 0.002 110 0% 99 22.2% 120 46.6% benign(0.167) deleterious(0.01) neutral(0.421) HMMPfam_COBRA1 ENTPD8 377841 genome.wustl.edu 37 9 140332457 140332457 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033113.1 -1 validated p.T69M 1.000 72 0% 67 29.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_GDA1_CD39 NELF 26012 genome.wustl.edu 37 9 140343912 140343912 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130969.1 -1 reviewed p.F509L 1.000 78 1.3% 79 31.6% 29 37.9% probably_damaging(0.99) tolerated(0.12) deleterious(0.702) NULL NELF 26012 genome.wustl.edu 37 9 140351951 140351951 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130969.1 -1 reviewed p.P179H 0.426 14 0% 15 33.3% 6 16.6% benign(0) tolerated(0.29) neutral(0.029) NULL PNPLA7 375775 genome.wustl.edu 37 9 140357963 140357963 + Missense_Mutation SNP G G A rs181370285 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098537.1 -1 validated p.R1083C 1.000 48 0% 54 20.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like PNPLA7 375775 genome.wustl.edu 37 9 140361802 140361802 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098537.1 -1 validated p.S1002 1.000 97 0% 114 19.3% 0 - - - - HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like PNPLA7 375775 genome.wustl.edu 37 9 140437885 140437885 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098537.1 -1 validated p.R169W 0.926 85 0% 72 30.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_cAMP-binding domain-like EHMT1 79813 genome.wustl.edu 37 9 140611197 140611197 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000460843 +1 known p.A69T 0.001 141 0% 114 21.9% 14 50% benign(0.418) deleterious(0.05) deleterious(0.481) NULL EHMT1 79813 genome.wustl.edu 37 9 140638477 140638477 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000460843 +1 known p.A369T 0.012 76 0% 80 23.7% 22 45.4% benign(0.132) deleterious(0.02) neutral(0.394) NULL EHMT1 79813 genome.wustl.edu 37 9 140707898 140707898 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000460843 +1 known p.E1032D 1.000 71 0% 72 18.1% 51 35.2% benign(0.351) deleterious(0.03) deleterious(0.475) HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain EHMT1 79813 genome.wustl.edu 37 9 140711892 140711892 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000460843 +1 known p.A1126T 0.991 101 0% 145 20.7% 54 40.7% benign(0) tolerated(0.87) neutral(0.001) HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain CACNA1B 774 genome.wustl.edu 37 9 140880876 140880876 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000718.2 +1 validated p.S594Y 1.000 166 0.6% 99 18.2% 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels DIP2C 22982 genome.wustl.edu 37 10 329333 329333 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014974.2 -1 reviewed p.D1391 0.075 354 0% 275 23.6% 4 25% - - - HMMPfam_AMP-binding,superfamily_SSF56801 DIP2C 22982 genome.wustl.edu 37 10 465072 465072 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014974.2 -1 reviewed p.P224 0.003 225 0.4% 247 24.3% 4 50% - - - NULL PITRM1 10531 genome.wustl.edu 37 10 3202075 3202075 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014889.2 -1 validated p.K324 0.510 398 0.3% 250 24.4% 28 39.2% - - - HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase AKR1C3 8644 genome.wustl.edu 37 10 5144402 5144402 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003739.4 +1 reviewed p.W227L 1.000 291 0% 130 17.7% 66 0% possibly_damaging(0.865) deleterious(0) deleterious(0.780) HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase UCN3 114131 genome.wustl.edu 37 10 5415922 5415922 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053049.2 +1 reviewed p.T80I 0.924 93 0% 68 13.2% 0 - possibly_damaging(0.931) deleterious(0) deleterious(0.822) NULL TUBAL3 79861 genome.wustl.edu 37 10 5435682 5435682 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024803.2 -1 validated p.R380Q 0.996 121 0% 84 10.7% 1 0% benign(0.003) deleterious(0) neutral(0.445) superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C TUBAL3 79861 genome.wustl.edu 37 10 5436212 5436212 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024803.2 -1 validated p.E203D 1.000 408 0% 264 19.3% 0 - benign(0.02) tolerated(0.06) neutral(0.324) HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like NET1 10276 genome.wustl.edu 37 10 5496441 5496441 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001047160.1 +1 validated p.H328Y 1.000 207 0% 196 23% 18 27.7% benign(0.25) tolerated(0.65) neutral(0.028) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1 NET1 10276 genome.wustl.edu 37 10 5498173 5498173 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001047160.1 +1 validated p.L441M 1.000 142 0% 107 15% 30 23.3% probably_damaging(0.982) tolerated(0.25) neutral(0.463) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like NET1 10276 genome.wustl.edu 37 10 5498947 5498947 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001047160.1 +1 validated p.T594N 1.000 85 0% 57 21.1% 62 46.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CALML3 810 genome.wustl.edu 37 10 5567268 5567268 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005185.2 +1 validated p.A74T 1.000 56 0% 53 20.8% 0 - benign(0.034) deleterious(0) neutral(0.447) HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand FAM208B 54906 genome.wustl.edu 37 10 5788563 5788563 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017782.4 +1 validated p.A1060E 0.003 202 0% 110 18.2% 5 40% possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) NULL FBXO18 84893 genome.wustl.edu 37 10 5948281 5948281 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032807.3 +1 reviewed p.A198T 0.360 58 0% 50 20% 12 33.3% benign(0) tolerated(1) - NULL RBM17 84991 genome.wustl.edu 37 10 6156025 6156025 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145547.1 +1 reviewed p.A315V 1.000 747 0.4% 522 19.3% 128 39.8% benign(0.34) deleterious(0.01) deleterious(0.513) HMMSmart_SM00361,superfamily_RNA-binding domain RBD SFMBT2 57713 genome.wustl.edu 37 10 7327800 7327800 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379713 -1 known p.Y185H 0.002 389 0% 160 20% 1 0% benign(0.005) deleterious(0) neutral(0.445) NULL ITIH5 80760 genome.wustl.edu 37 10 7618515 7618515 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030569.5 -1 validated p.V627I 0.000 33 0% 13 53.8% 7 57.1% benign(0.048) tolerated(0.06) neutral(0.326) NULL ITIH2 3698 genome.wustl.edu 37 10 7769035 7769035 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002216.2 +1 validated p.Q369H 0.899 425 0% 243 27.6% 0 - benign(0.065) deleterious(0.01) neutral(0.410) HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 ITIH2 3698 genome.wustl.edu 37 10 7771917 7771917 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002216.2 +1 validated p.E428K 1.000 304 0% 198 19.7% 0 - possibly_damaging(0.773) deleterious(0.03) deleterious(0.652) HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 USP6NL 9712 genome.wustl.edu 37 10 11523807 11523807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080491.2 -1 validated p.T364I 0.040 258 0% 198 26.3% 4 25% benign(0.012) deleterious(0.03) neutral(0.365) superfamily_Ypt/Rab-GAP domain of gyp1p ECHDC3 79746 genome.wustl.edu 37 10 11805518 11805518 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024693.4 +1 validated p.P296H 1.000 19 0% 26 26.9% 43 90.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ClpP/crotonase DHTKD1 55526 genome.wustl.edu 37 10 12162227 12162227 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018706.5 +1 validated p.S873 0.166 477 0% 465 12% 14 21.4% - - - NULL SEC61A2 55176 genome.wustl.edu 37 10 12197904 12197904 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018144.3 +1 reviewed p.S197N 1.000 417 0.2% 171 20.5% 5 40% benign(0.235) deleterious(0) neutral(0.468) HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit MCM10 55388 genome.wustl.edu 37 10 13214437 13214437 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182751.2 +1 validated p.T137 0.398 221 0% 139 18.7% 4 25% - - - NULL PHYH 5264 genome.wustl.edu 37 10 13323039 13323039 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006214.3 -1 reviewed p.I300 0.127 626 0.2% 455 25.3% 49 36.7% - - - NULL PHYH 5264 genome.wustl.edu 37 10 13330526 13330526 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006214.3 -1 reviewed p.R171H 1.000 89 0% 81 28.4% 53 39.6% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_PhyH LOC100287471 100287471 genome.wustl.edu 37 10 13350249 13350249 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342961.1 -1 model p.G67C 0.931 63 0% 44 20.5% 0 - probably_damaging(0.959) tolerated(0.11) deleterious(0.674) NULL LOC100287471 100287471 genome.wustl.edu 37 10 13350348 13350348 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342961.1 -1 model p.A34T 0.911 73 0% 45 28.9% 0 - benign(0) tolerated(1) - NULL SEPHS1 22929 genome.wustl.edu 37 10 13380725 13380725 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012247.3 -1 reviewed p.V93I 1.000 238 0% 185 23.2% 96 38.5% benign(0.012) tolerated(0.2) neutral(0.050) HMMPfam_AIRS,superfamily_PurM N-terminal domain-like SEPHS1 22929 genome.wustl.edu 37 10 13386789 13386789 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012247.3 -1 reviewed p.E54D 1.000 151 0% 221 20.4% 46 47.8% benign(0) tolerated(0.54) neutral(0.007) NULL BEND7 222389 genome.wustl.edu 37 10 13494557 13494557 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152751.2 -1 validated p.R337W 1.000 468 0% 324 26.9% 12 41.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_BEN FRMD4A 55691 genome.wustl.edu 37 10 13698769 13698769 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018027.3 -1 validated p.K940 0.995 40 0% 51 33.3% 8 12.5% - - - NULL DCLRE1C 64421 genome.wustl.edu 37 10 14950573 14950573 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033855.1 -1 reviewed p.N638T 0.000 773 0% 307 25.7% 11 54.5% benign(0) tolerated(0.13) neutral(0.253) NULL FAM171A1 221061 genome.wustl.edu 37 10 15255565 15255565 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010924.1 -1 validated p.N674 0.932 178 0% 144 13.2% 17 35.2% - - - HMMPfam_UPF0560 FAM171A1 221061 genome.wustl.edu 37 10 15255731 15255731 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010924.1 -1 validated p.S619F 0.853 108 0.9% 89 19.1% 9 44.4% possibly_damaging(0.882) deleterious(0.01) deleterious(0.750) HMMPfam_UPF0560 FAM171A1 221061 genome.wustl.edu 37 10 15256022 15256022 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010924.1 -1 validated p.A522V 0.004 170 0% 121 19.8% 17 47% benign(0) tolerated(0.78) neutral(0.001) HMMPfam_UPF0560 PTER 9317 genome.wustl.edu 37 10 16526441 16526441 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001484.1 +1 validated p.L20 1.000 127 0% 28 17.9% 6 33.3% - - - HMMPfam_PTE,superfamily_Metallo-dependent hydrolases PTER 9317 genome.wustl.edu 37 10 16528493 16528493 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001484.1 +1 validated p.A192D 0.996 164 0% 33 24.2% 11 54.5% benign(0.062) tolerated(0.57) neutral(0.010) HMMPfam_PTE,superfamily_Metallo-dependent hydrolases CUBN 8029 genome.wustl.edu 37 10 17113487 17113487 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081.3 -1 reviewed p.L855I 0.739 297 0% 108 23.1% 1 100% benign(0.002) tolerated(0.86) neutral(0.001) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CUBN 8029 genome.wustl.edu 37 10 17156057 17156057 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081.3 -1 reviewed p.Q284 0.001 74 0% 42 19% 0 - - - - HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin TRDMT1 1787 genome.wustl.edu 37 10 17199740 17199740 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004412.5 -1 reviewed p.K196T 0.386 425 0% 195 19.5% 1 0% benign(0.282) tolerated(0.17) neutral(0.145) superfamily_S-adenosyl-L-methionine-dependent methyltransferases VIM 7431 genome.wustl.edu 37 10 17275845 17275845 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003380.3 +1 reviewed p.T266M 1.000 90 0% 58 25.9% 1649 28.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Filament ST8SIA6 338596 genome.wustl.edu 37 10 17401523 17401523 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004470.1 -1 validated p.A123T 0.997 196 0.5% 90 14.4% 0 - benign(0) tolerated(0.34) neutral(0.023) HMMPfam_Glyco_transf_29 CACNB2 783 genome.wustl.edu 37 10 18690892 18690892 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201596.2 +1 reviewed p.D85N 1.000 183 0% 79 11.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CACNB2 783 genome.wustl.edu 37 10 18823029 18823029 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201596.2 +1 reviewed p.R360M 1.000 268 0% 103 21.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases CACNB2 783 genome.wustl.edu 37 10 18823141 18823141 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201596.2 +1 reviewed p.K397 1.000 299 0% 109 18.3% 0 - - - - HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases CACNB2 783 genome.wustl.edu 37 10 18825103 18825103 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201596.2 +1 reviewed p.D427A 1.000 246 0% 118 22% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases NEBL 10529 genome.wustl.edu 37 10 21157634 21157634 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006393.2 -1 reviewed p.D215Y 1.000 346 0% 112 17.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nebulin,HMMSmart_SM00227 MLLT10 8028 genome.wustl.edu 37 10 21901363 21901363 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004641.2 +1 validated p.Q164H 1.000 218 0% 125 14.4% 1 0% probably_damaging(0.979) deleterious(0) deleterious(0.867) HMMSmart_PHD MLLT10 8028 genome.wustl.edu 37 10 21977432 21977432 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004641.2 +1 validated p.S571N 0.046 352 0% 105 24.8% 1 100% benign(0.205) deleterious(0.01) neutral(0.426) NULL MLLT10 8028 genome.wustl.edu 37 10 22015231 22015231 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004641.2 +1 validated p.R662I 1.000 400 0% 258 18.2% 5 40% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SPAG6 9576 genome.wustl.edu 37 10 22700066 22700066 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012443.2 +1 reviewed p.I474T 1.000 275 0% 256 26.2% 0 - possibly_damaging(0.922) deleterious(0) deleterious(0.816) superfamily_ARM repeat PIP4K2A 5305 genome.wustl.edu 37 10 22828987 22828987 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005028.4 -1 reviewed p.E351D 1.000 196 0% 108 23.1% 15 40% probably_damaging(0.997) deleterious(0.02) deleterious(0.849) HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like ARMC3 219681 genome.wustl.edu 37 10 23297255 23297255 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173081.3 +1 validated p.S627N 1.000 169 0% 95 23.2% 6 16.6% possibly_damaging(0.658) tolerated(0.09) deleterious(0.529) NULL ARMC3 219681 genome.wustl.edu 37 10 23319619 23319619 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173081.3 +1 validated p.E714* 1.000 660 0% 172 23.8% 14 14.2% - - - NULL KIAA1217 56243 genome.wustl.edu 37 10 24722064 24722064 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019590.3 +1 validated p.V232I 1.000 190 0% 112 19.6% 5 0% probably_damaging(0.965) tolerated(0.06) deleterious(0.730) NULL KIAA1217 56243 genome.wustl.edu 37 10 24833393 24833393 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019590.3 +1 validated p.P1732S 0.897 174 0% 89 15.7% 45 44.4% benign(0.001) tolerated(0.4) neutral(0.016) NULL ARHGAP21 57584 genome.wustl.edu 37 10 24874032 24874032 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020824.3 -1 validated p.S1729L 0.926 212 0% 82 24.4% 23 34.7% benign(0.032) deleterious(0.04) neutral(0.350) NULL ARHGAP21 57584 genome.wustl.edu 37 10 24874437 24874437 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020824.3 -1 validated p.T1594I 0.022 165 0% 73 32.9% 33 45.4% benign(0.001) tolerated(0.3) neutral(0.029) NULL ARHGAP21 57584 genome.wustl.edu 37 10 24910181 24910181 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020824.3 -1 validated p.A215T 1.000 202 0% 80 22.5% 7 42.8% possibly_damaging(0.476) tolerated(0.34) neutral(0.180) NULL ENKUR 219670 genome.wustl.edu 37 10 25284595 25284595 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145010.2 -1 provisional p.P143T 1.000 322 0% 269 23% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL THNSL1 79896 genome.wustl.edu 37 10 25313659 25313659 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024838.4 +1 validated p.D503N 1.000 129 0% 115 22.6% 6 66.6% probably_damaging(1) tolerated(0.95) deleterious(0.500) HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes GPR158 57512 genome.wustl.edu 37 10 25464634 25464634 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020752.2 +1 validated p.K95N 0.989 21 0% 11 45.5% 0 - benign(0.198) deleterious(0.01) neutral(0.425) NULL GPR158 57512 genome.wustl.edu 37 10 25861655 25861655 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020752.2 +1 validated p.A531V 0.992 478 0% 232 22.8% 0 - benign(0.268) tolerated(0.4) neutral(0.044) HMMPfam_7tm_3 GPR158 57512 genome.wustl.edu 37 10 25885645 25885645 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020752.2 +1 validated p.R691Q 0.998 246 0.4% 72 26.4% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL MYO3A 53904 genome.wustl.edu 37 10 26241089 26241089 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017433.4 +1 reviewed p.P17H 1.000 232 0% 67 23.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Kinase_like MYO3A 53904 genome.wustl.edu 37 10 26455091 26455091 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017433.4 +1 reviewed p.A1032D 1.000 177 0% 60 18.3% 0 - possibly_damaging(0.908) deleterious(0.02) deleterious(0.744) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYO3A 53904 genome.wustl.edu 37 10 26500838 26500838 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017433.4 +1 reviewed p.F1599 1.000 51 0% 56 26.8% 0 - - - - NULL GAD2 2572 genome.wustl.edu 37 10 26559670 26559670 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000818.2 +1 reviewed p.I359 1.000 137 0% 43 20.9% 0 - - - - HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases YME1L1 10730 genome.wustl.edu 37 10 27403484 27403484 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139312.1 -1 reviewed p.S715Y 1.000 578 0% 343 17.2% 125 39.2% benign(0.001) deleterious(0.01) neutral(0.406) HMMPfam_Peptidase_M41 YME1L1 10730 genome.wustl.edu 37 10 27411876 27411876 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139312.1 -1 reviewed p.V434I 1.000 334 0% 151 28.5% 63 42.8% possibly_damaging(0.896) tolerated(1) neutral(0.353) HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases MASTL 84930 genome.wustl.edu 37 10 27469967 27469967 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032844.3 +1 reviewed p.Q783H 0.627 446 0% 149 10.1% 15 13.3% benign(0.022) deleterious(0) neutral(0.446) superfamily_Kinase_like,HMMPfam_Pkinase MASTL 84930 genome.wustl.edu 37 10 27469971 27469971 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032844.3 +1 reviewed p.V785L 1.000 428 0% 142 23.9% 10 40% probably_damaging(0.995) deleterious(0) deleterious(0.902) superfamily_Kinase_like,HMMPfam_Pkinase MPP7 143098 genome.wustl.edu 37 10 28409157 28409157 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173496.3 -1 validated p.A285T 1.000 278 0% 95 21.1% 8 0% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2 WAC 51322 genome.wustl.edu 37 10 28897220 28897220 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016628.3 +1 reviewed p.A342V 1.000 324 0% 272 21.7% 63 42.8% - - - NULL BAMBI 25805 genome.wustl.edu 37 10 28970945 28970945 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012342.2 +1 reviewed p.R133I 1.000 306 0% 275 22.9% 14 64.2% possibly_damaging(0.444) deleterious(0.02) deleterious(0.528) NULL BAMBI 25805 genome.wustl.edu 37 10 28971137 28971137 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012342.2 +1 reviewed p.S197I 1.000 267 0% 258 23.3% 28 42.8% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL SVIL 6840 genome.wustl.edu 37 10 29788161 29788161 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021738.2 -1 reviewed p.T1183M 1.000 327 0.3% 198 17.2% 4 25% probably_damaging(0.974) deleterious(0) deleterious(0.861) NULL SVIL 6840 genome.wustl.edu 37 10 29812598 29812598 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021738.2 -1 reviewed p.A982V 0.005 338 0% 203 28.1% 6 33.3% benign(0) tolerated(1) - NULL MTPAP 55149 genome.wustl.edu 37 10 30630457 30630457 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018109.3 -1 validated p.K90 1.000 221 0% 138 25.4% 18 22.2% - - - NULL MAP3K8 1326 genome.wustl.edu 37 10 30736868 30736868 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005204.2 +1 reviewed p.A165V 1.000 439 0% 229 21.4% 1 0% probably_damaging(0.978) deleterious(0.02) deleterious(0.803) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase LYZL2 119180 genome.wustl.edu 37 10 30900899 30900899 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183058.2 -1 validated p.D190E 0.722 576 0.2% 190 16.8% 0 - benign(0) tolerated(0.07) neutral(0.319) HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955 LYZL2 119180 genome.wustl.edu 37 10 30915834 30915834 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183058.2 -1 validated p.A50V 0.008 333 0.3% 188 14.9% 0 - benign(0) tolerated(0.51) neutral(0.009) NULL LOC645954 645954 genome.wustl.edu 37 10 30986316 30986316 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_017086.3 +1 model NULL 1.000 94 0% 41 24.4% 1 0% - - - - LOC645954 645954 genome.wustl.edu 37 10 31001586 31001586 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_017086.3 +1 model NULL 1.000 197 0% 65 13.8% 0 - - - - - ZNF438 220929 genome.wustl.edu 37 10 31138756 31138756 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143766.1 -1 validated p.A193V 0.000 429 0% 307 45.3% 4 75% benign(0.002) tolerated(0.13) neutral(0.253) NULL ZEB1 6935 genome.wustl.edu 37 10 31809345 31809345 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030751.5 +1 reviewed p.A361D 1.000 273 0% 63 19% 3 0% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL ZEB1 6935 genome.wustl.edu 37 10 31809757 31809757 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030751.5 +1 reviewed p.V498 0.051 63 0% 31 22.6% 1 0% - - - NULL KIF5B 3799 genome.wustl.edu 37 10 32317452 32317452 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004521.2 -1 validated p.M543I 1.000 620 0% 529 24.4% 32 43.7% benign(0.008) tolerated(0.17) neutral(0.059) NULL KIF5B 3799 genome.wustl.edu 37 10 32323659 32323659 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004521.2 -1 validated p.T357N 1.000 260 0% 214 16.4% 20 45% benign(0.281) tolerated(0.32) neutral(0.110) NULL C10orf68 79741 genome.wustl.edu 37 10 33103363 33103363 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024688.2 +1 validated p.R326* 0.001 368 0% 124 25% 0 - - - - NULL C10orf68 79741 genome.wustl.edu 37 10 33134501 33134501 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024688.2 +1 validated p.T399N 0.000 227 0% 77 24.7% 0 - benign(0.099) deleterious(0.03) neutral(0.372) NULL NRP1 8829 genome.wustl.edu 37 10 33475324 33475324 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003873.5 -1 validated p.A719T 1.000 113 0% 49 20.4% 28 35.7% possibly_damaging(0.797) tolerated(0.17) neutral(0.358) HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1 NRP1 8829 genome.wustl.edu 37 10 33481291 33481291 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003873.5 -1 validated p.F660L 1.000 365 0% 152 21.7% 37 37.8% benign(0) tolerated(0.63) neutral(0.004) HMMPfam_MAM,HMMSmart_SM00137 NRP1 8829 genome.wustl.edu 37 10 33491728 33491728 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000374823 -1 known p.P652L 0.000 126 0% 104 26% 1 100% probably_damaging(0.988) - - NULL PARD3 56288 genome.wustl.edu 37 10 34400107 34400107 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019619.3 -1 validated p.F1354S 1.000 52 0% 41 22% 11 72.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CCNY 219771 genome.wustl.edu 37 10 35854954 35854954 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145012.4 +1 validated p.N250 0.925 215 0% 118 22.9% 50 32% - - - HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like NAMPTL 646309 genome.wustl.edu 37 10 36812040 36812040 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440465 -1 known p.L375I 1.000 421 0% 616 21.9% 2 0% benign(0.033) tolerated(0.1) neutral(0.288) HMMPfam_NAPRTase NAMPTL 646309 genome.wustl.edu 37 10 36812703 36812703 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440465 -1 known p.A154T 1.000 478 0% 626 17.9% 26 0% benign(0.002) tolerated(0.37) neutral(0.019) NULL NAMPTL 646309 genome.wustl.edu 37 10 36812825 36812825 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440465 -1 known p.F113C 1.000 543 0% 771 14% 9 0% probably_damaging(0.999) tolerated(0.32) deleterious(0.514) NULL ANKRD30A 91074 genome.wustl.edu 37 10 37431077 37431077 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052997.2 +1 validated p.A362T 0.003 318 0.3% 169 17.2% 0 - benign(0.101) tolerated(1) neutral(0.007) NULL ANKRD30A 91074 genome.wustl.edu 37 10 37436342 37436342 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052997.2 +1 validated p.E444 0.001 182 0% 116 13.8% 0 - - - - NULL ZNF248 57209 genome.wustl.edu 37 10 38121084 38121084 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021045.1 -1 provisional p.R400K 1.000 350 0% 125 16% 2 0% benign(0.149) tolerated(0.16) neutral(0.072) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF25 219749 genome.wustl.edu 37 10 38246370 38246370 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145011.2 -1 provisional p.N40K 0.996 318 0% 168 13.1% 0 - benign(0.026) deleterious(0) neutral(0.446) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF33B 7582 genome.wustl.edu 37 10 43089048 43089048 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006955.1 -1 provisional p.F450 0.910 435 0% 160 22.5% 2 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF33B 7582 genome.wustl.edu 37 10 43089614 43089614 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006955.1 -1 provisional p.L262F 0.433 282 0% 78 16.7% 9 22.2% benign(0.002) tolerated(0.2) neutral(0.049) NULL BMS1 9790 genome.wustl.edu 37 10 43316001 43316001 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014753.3 +1 reviewed p.R939* 0.996 77 0% 64 10.9% 25 4% - - - HMMPfam_DUF663 RET 5979 genome.wustl.edu 37 10 43623618 43623618 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020975.4 +1 reviewed p.G1082 1.000 255 0.4% 202 24.8% 0 - - - - NULL ZNF485 220992 genome.wustl.edu 37 10 44112192 44112192 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145312.3 +1 validated p.R234I 1.000 213 0% 221 25.8% 8 75% benign(0.288) tolerated(0.06) neutral(0.411) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CXCL12 6387 genome.wustl.edu 37 10 44874128 44874128 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033886.2 -1 reviewed p.K75E 0.240 669 0% 605 25.8% 23 0% probably_damaging(0.99) tolerated(0.68) neutral(0.444) HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8 RASSF4 83937 genome.wustl.edu 37 10 45478023 45478023 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032023.3 +1 reviewed p.R65W 0.992 93 0% 133 15.8% 20 10% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ALOX5 240 genome.wustl.edu 37 10 45878080 45878080 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000698.2 +1 reviewed p.C100 1.000 95 0% 88 26.1% 15 26.6% - - - HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase ZFAND4 93550 genome.wustl.edu 37 10 46113706 46113706 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128324.1 -1 validated p.E644* 0.992 280 0% 158 17.7% 4 50% - - - NULL ZFAND4 93550 genome.wustl.edu 37 10 46135367 46135367 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128324.1 -1 validated p.T205N 0.000 397 0% 203 27.6% 8 50% benign(0.008) tolerated(0.19) neutral(0.050) NULL LOC100288690 100288690 genome.wustl.edu 37 10 46217814 46217814 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002342980.1 -1 model p.R18M 0.999 1245 0% 1163 13.7% 0 - - - - NULL FAM21C 253725 genome.wustl.edu 37 10 46280015 46280015 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015262.2 +1 validated p.G825 0.031 560 0% 278 23.4% 13 61.5% - - - NULL ZNF488 118738 genome.wustl.edu 37 10 48370793 48370793 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153034.2 +1 provisional p.K87N 0.004 20 0% 20 40% 0 - possibly_damaging(0.815) tolerated(0.05) deleterious(0.653) NULL ZNF488 118738 genome.wustl.edu 37 10 48371273 48371273 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153034.2 +1 provisional p.Q247H 0.007 76 0% 114 17.5% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL GDF10 2662 genome.wustl.edu 37 10 48428867 48428867 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004962.2 -1 reviewed p.R340H 0.324 64 0% 119 29.4% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL FRMPD2 143162 genome.wustl.edu 37 10 49381020 49381020 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018071.3 -1 reviewed p.G1064 0.969 168 0% 37 10.8% 0 - - - - NULL FRMPD2 143162 genome.wustl.edu 37 10 49414915 49414915 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018071.3 -1 reviewed p.R558M 0.000 270 0% 96 21.9% 1 100% probably_damaging(0.964) deleterious(0.03) deleterious(0.771) HMMPfam_FERM_C,superfamily_PH domain-like MAPK8 5599 genome.wustl.edu 37 10 49609795 49609795 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139047.1 +1 reviewed p.P31L 1.000 213 0% 164 23.8% 4 25% benign(0.025) tolerated(0.07) neutral(0.320) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ARHGAP22 58504 genome.wustl.edu 37 10 49667831 49667831 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021226.2 -1 validated p.E185 0.997 55 0% 72 23.6% 4 0% - - - HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP ARHGAP22 58504 genome.wustl.edu 37 10 49763555 49763555 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021226.2 -1 validated p.P92L 0.969 177 0% 121 25.6% 1 0% benign(0.002) tolerated(0.38) neutral(0.018) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like WDFY4 57705 genome.wustl.edu 37 10 49933924 49933924 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020945.1 +1 validated e5-2 1.000 151 0% 90 16.7% 0 - - - - - WDFY4 57705 genome.wustl.edu 37 10 49994705 49994705 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020945.1 +1 validated p.P1200S 1.000 321 0% 133 21.8% 0 - probably_damaging(1) tolerated(0.12) deleterious(0.760) NULL WDFY4 57705 genome.wustl.edu 37 10 50004440 50004440 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020945.1 +1 validated p.R1452K 0.002 246 0% 92 15.2% 0 - benign(0.014) tolerated(0.11) neutral(0.272) NULL C10orf71 118461 genome.wustl.edu 37 10 50531439 50531439 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135196.1 +1 validated p.H283 0.745 109 0% 124 17.7% 0 - - - - NULL C10orf71 118461 genome.wustl.edu 37 10 50531494 50531494 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135196.1 +1 validated p.A302T 0.002 116 0% 115 13.9% 0 - probably_damaging(1) tolerated(0.19) deleterious(0.549) NULL DRGX 644168 genome.wustl.edu 37 10 50574234 50574234 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080520.1 -1 provisional p.P245L 0.781 111 0% 72 26.4% 0 - benign(0) deleterious(0.01) neutral(0.406) NULL PGBD3 267004 genome.wustl.edu 37 10 50724040 50724040 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170753.2 -1 validated p.T374I 0.003 155 0% 39 17.9% 9 77.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ERCC6 2074 genome.wustl.edu 37 10 50732357 50732357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000124.2 -1 reviewed p.E373D 0.988 194 0% 164 28.7% 4 75% probably_damaging(0.997) tolerated(0.32) deleterious(0.490) NULL OGDHL 55753 genome.wustl.edu 37 10 50952752 50952752 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018245.2 -1 validated p.R559M 1.000 184 0% 218 26.6% 41 39% benign(0.257) tolerated(0.08) neutral(0.327) HMMPfam_E1_dh,superfamily_SSF52518 OGDHL 55753 genome.wustl.edu 37 10 50953417 50953417 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018245.2 -1 validated p.E534D 1.000 159 0% 134 25.4% 47 34% benign(0.012) tolerated(0.2) neutral(0.050) HMMPfam_E1_dh,superfamily_SSF52518 OGDHL 55753 genome.wustl.edu 37 10 50955146 50955146 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018245.2 -1 validated p.A366T 1.000 326 0% 252 26.6% 53 64.1% probably_damaging(0.988) deleterious(0.02) deleterious(0.821) HMMPfam_E1_dh,superfamily_SSF52518 OGDHL 55753 genome.wustl.edu 37 10 50955188 50955188 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018245.2 -1 validated p.N352D 1.000 371 0% 283 16.3% 52 25% benign(0) tolerated(0.16) neutral(0.059) HMMPfam_E1_dh,superfamily_SSF52518 OGDHL 55753 genome.wustl.edu 37 10 50960759 50960759 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018245.2 -1 validated p.D135Y 1.000 113 0% 96 27.1% 35 60% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52518 PARG 8505 genome.wustl.edu 37 10 51087755 51087755 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003631.2 -1 reviewed p.S651L 0.999 517 0% 185 17.8% 13 30.7% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_PARG_cat MSMB 4477 genome.wustl.edu 37 10 51556821 51556821 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002443.2 +1 reviewed p.C60W 0.002 201 0% 122 25.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PSP94 NCOA4 8031 genome.wustl.edu 37 10 51585491 51585491 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145260.1 +1 reviewed p.S546 0.130 82 0% 54 24.1% 47 29.7% - - - NULL PRKG1 5592 genome.wustl.edu 37 10 54031208 54031208 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006258.2 +1 validated p.E424D 1.000 165 0% 25 16% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase DKK1 22943 genome.wustl.edu 37 10 54074791 54074791 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012242.2 +1 reviewed p.R118* 1.000 23 0% 36 30.6% 1 0% - - - HMMPfam_Dickkopf_N PCDH15 65217 genome.wustl.edu 37 10 55570392 55570392 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142769.1 -1 reviewed p.R1481Q 0.999 468 0% 257 24.1% 0 - possibly_damaging(0.883) deleterious(0) deleterious(0.789) NULL PCDH15 65217 genome.wustl.edu 37 10 55581785 55581785 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142763.1 -1 reviewed p.S1908R 1.000 821 0% 849 24.1% 0 - unknown(0) deleterious(0) - NULL PCDH15 65217 genome.wustl.edu 37 10 55663050 55663050 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142763.1 -1 reviewed p.G1157S 1.000 298 0% 153 24.2% 0 - probably_damaging(0.999) tolerated(0.41) deleterious(0.505) HMMPfam_Cadherin,superfamily_Cadherin-like PCDH15 65217 genome.wustl.edu 37 10 55700629 55700629 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142763.1 -1 reviewed p.E1082* 1.000 287 0% 153 24.2% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH15 65217 genome.wustl.edu 37 10 55719581 55719581 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142763.1 -1 reviewed p.D1016E 0.999 223 0% 101 21.8% 0 - probably_damaging(0.999) tolerated(0.48) deleterious(0.501) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH15 65217 genome.wustl.edu 37 10 55892663 55892663 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142763.1 -1 reviewed p.R635M 1.000 330 0% 175 23.4% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Cadherin,superfamily_Cadherin-like PCDH15 65217 genome.wustl.edu 37 10 56287590 56287590 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142763.1 -1 reviewed p.D52Y 1.000 290 0% 170 23.5% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CCDC6 8030 genome.wustl.edu 37 10 61612436 61612436 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005436.3 -1 validated p.E110* 1.000 359 0% 180 20% 15 0% - - - HMMPfam_DUF2046 ANK3 288 genome.wustl.edu 37 10 61823957 61823957 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020987.2 -1 reviewed p.L4137V 1.000 237 0% 92 20.7% 15 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like ANK3 288 genome.wustl.edu 37 10 61832248 61832248 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020987.2 -1 reviewed p.N2797 0.000 214 0% 64 28.1% 0 - - - - NULL ANK3 288 genome.wustl.edu 37 10 61842462 61842462 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020987.2 -1 reviewed p.L1412 0.119 479 0% 191 26.2% 12 33.3% - - - NULL CDK1 983 genome.wustl.edu 37 10 62539953 62539953 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001786.4 +1 reviewed p.I10 1.000 331 0% 459 13.5% 34 26.4% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase RHOBTB1 9886 genome.wustl.edu 37 10 62631290 62631290 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014836.4 -1 reviewed p.R681C 1.000 590 0% 212 18.9% 6 83.3% possibly_damaging(0.693) deleterious(0.02) deleterious(0.631) NULL ARID5B 84159 genome.wustl.edu 37 10 63760010 63760010 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032199.2 +1 validated p.Q221H 1.000 154 0% 49 12.2% 3 66.6% benign(0.253) deleterious(0.05) neutral(0.371) NULL RTKN2 219790 genome.wustl.edu 37 10 64022469 64022469 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145307.2 -1 provisional p.L58F 1.000 303 0% 381 21.5% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00742 JMJD1C 221037 genome.wustl.edu 37 10 64945323 64945323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032776.1 -1 validated p.R2277K 1.000 372 0% 310 15.5% 13 7.6% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) HMMSmart_SM00558 JMJD1C 221037 genome.wustl.edu 37 10 64950714 64950714 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000327520 -1 known p.Y624C 0.862 488 0.2% 252 25% 10 60% - - - NULL JMJD1C 221037 genome.wustl.edu 37 10 64957268 64957268 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000327520 -1 known p.V396A 1.000 347 0% 218 15.6% 4 100% - - - NULL JMJD1C 221037 genome.wustl.edu 37 10 64967069 64967069 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032776.1 -1 validated p.A1454T 1.000 57 0% 66 13.6% 6 0% possibly_damaging(0.577) tolerated(0.12) neutral(0.459) NULL JMJD1C 221037 genome.wustl.edu 37 10 64968244 64968244 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032776.1 -1 validated p.H1062R 0.996 417 0% 127 17.3% 4 25% probably_damaging(0.999) tolerated(0.32) deleterious(0.514) NULL CTNNA3 29119 genome.wustl.edu 37 10 67748548 67748548 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127384.1 -1 validated p.G723* 1.000 267 0% 138 21% 0 - - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin CTNNA3 29119 genome.wustl.edu 37 10 68040264 68040264 + Silent SNP T T G rs182490263 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127384.1 -1 validated p.T616 0.999 419 0% 78 21.8% 0 - - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin MYPN 84665 genome.wustl.edu 37 10 69948824 69948824 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032578.2 +1 validated p.V956I 1.000 189 0% 63 19% 0 - possibly_damaging(0.882) tolerated(1) neutral(0.344) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin ATOH7 220202 genome.wustl.edu 37 10 69991233 69991233 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145178.2 -1 validated p.P68T 0.993 57 0% 60 28.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic HNRNPH3 3189 genome.wustl.edu 37 10 70098422 70098422 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012207.2 +1 reviewed p.R138 1.000 676 0% 495 10.7% 162 0% - - - NULL DNA2 1763 genome.wustl.edu 37 10 70179610 70179610 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080449.1 -1 provisional p.N999D 1.000 409 0% 309 17.2% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases DNA2 1763 genome.wustl.edu 37 10 70182093 70182093 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080449.1 -1 provisional p.H948Q 0.002 362 0% 220 22.7% 8 87.5% benign(0.03) deleterious(0.03) neutral(0.366) superfamily_P-loop containing nucleoside triphosphate hydrolases DNA2 1763 genome.wustl.edu 37 10 70227935 70227935 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080449.1 -1 provisional p.S215N 1.000 413 0% 387 26.4% 2 50% probably_damaging(0.976) deleterious(0.03) deleterious(0.782) HMMPfam_Dna2 TET1 80312 genome.wustl.edu 37 10 70332414 70332414 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030625.2 +1 validated p.R107* 0.993 124 1.6% 87 25.3% 0 - - - - NULL TET1 80312 genome.wustl.edu 37 10 70404707 70404707 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030625.2 +1 validated p.V741I 0.979 225 0% 99 11.1% 0 - benign(0.056) tolerated(0.4) neutral(0.019) NULL TET1 80312 genome.wustl.edu 37 10 70404827 70404827 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030625.2 +1 validated p.E781* 0.973 162 0% 81 27.2% 0 - - - - NULL TET1 80312 genome.wustl.edu 37 10 70405959 70405959 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030625.2 +1 validated p.R1158Q 0.036 340 0.3% 137 22.6% 0 - probably_damaging(0.993) deleterious(0.01) deleterious(0.856) NULL TET1 80312 genome.wustl.edu 37 10 70406353 70406353 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030625.2 +1 validated p.T1289 0.002 219 0% 99 11.1% 1 0% - - - NULL CCAR1 55749 genome.wustl.edu 37 10 70496642 70496642 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018237.2 +1 validated p.G28D 1.000 283 0% 110 25.5% 18 27.7% unknown(0) deleterious(0.01) - NULL CCAR1 55749 genome.wustl.edu 37 10 70531185 70531185 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018237.2 +1 validated p.D841Y 1.000 263 0% 107 17.8% 26 19.2% unknown(0) deleterious(0.01) - NULL ENSG00000247499 0 genome.wustl.edu 37 10 70546145 70546145 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000501160 -1 known NULL 0.036 21 0% 26 34.6% 0 - - - - - STOX1 219736 genome.wustl.edu 37 10 70645798 70645798 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130161.2 +1 reviewed p.R749H 0.000 274 0% 134 23.1% 1 0% benign(0.013) tolerated(0.08) neutral(0.300) NULL STOX1 219736 genome.wustl.edu 37 10 70646249 70646249 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130161.2 +1 reviewed p.Q899H 0.000 109 0% 53 13.2% 4 25% benign(0.003) tolerated(0.29) neutral(0.029) NULL KIAA1279 26128 genome.wustl.edu 37 10 70775846 70775846 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015634.3 +1 reviewed p.L514 0.002 135 0% 104 19.2% 16 56.2% - - - NULL HKDC1 80201 genome.wustl.edu 37 10 71002996 71002996 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025130.3 +1 validated p.G250 0.010 210 0% 152 21.1% 8 50% - - - HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain TACR2 6865 genome.wustl.edu 37 10 71166959 71166959 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001057.2 -1 validated p.G273 0.756 244 0% 294 26.2% 2 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 TACR2 6865 genome.wustl.edu 37 10 71175704 71175704 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001057.2 -1 validated p.A126T 1.000 153 0.7% 134 22.4% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 COL13A1 1305 genome.wustl.edu 37 10 71678045 71678045 + Missense_Mutation SNP C C T rs191741850 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130103.1 +1 reviewed p.A334V 0.425 183 0% 104 24% 0 - benign(0.008) - - NULL AIFM2 84883 genome.wustl.edu 37 10 71876491 71876491 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032797.4 -1 reviewed p.E219A 0.179 247 0% 154 19.5% 50 52% benign(0.013) tolerated(0.72) neutral(0.002) HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain AIFM2 84883 genome.wustl.edu 37 10 71877646 71877646 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032797.4 -1 reviewed p.A180T 1.000 83 0% 41 31.7% 39 25.6% benign(0.313) tolerated(0.24) neutral(0.135) HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain KIAA1274 27143 genome.wustl.edu 37 10 72307173 72307173 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014431.2 +1 validated p.R745W 1.000 87 0% 55 10.9% 10 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRF1 5551 genome.wustl.edu 37 10 72358804 72358804 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083116.1 -1 reviewed p.R225W 0.511 130 0% 105 24.8% 61 0% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_MACPF,HMMSmart_SM00457 C10orf27 219793 genome.wustl.edu 37 10 72531188 72531188 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152710.2 -1 validated p.M334V 0.000 365 0% 246 11% 0 - benign(0) tolerated(1) - NULL C10orf27 219793 genome.wustl.edu 37 10 72543126 72543126 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152710.2 -1 validated p.D4Y 0.181 301 0% 157 15.3% 0 - possibly_damaging(0.948) deleterious(0.01) deleterious(0.796) NULL UNC5B 219699 genome.wustl.edu 37 10 73051330 73051330 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170744.3 +1 validated p.S479N 1.000 108 0% 95 16.8% 4 25% benign(0) tolerated(1) - NULL CDH23 64072 genome.wustl.edu 37 10 73199651 73199651 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022124.5 +1 reviewed p.C21* 1.000 222 0% 170 17.1% 0 - - - - NULL CDH23 64072 genome.wustl.edu 37 10 73544107 73544107 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022124.5 +1 reviewed p.R1811Q 1.000 75 0% 79 20.3% 1 0% probably_damaging(1) tolerated(0.45) deleterious(0.512) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73553197 73553197 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022124.5 +1 reviewed p.R2171H 1.000 77 0% 54 24.1% 1 0% possibly_damaging(0.833) tolerated(0.13) deleterious(0.570) HMMSmart_SM00112,superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73563155 73563155 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022124.5 +1 reviewed p.G2617D 1.000 88 0% 54 14.8% 0 - probably_damaging(0.996) tolerated(0.36) deleterious(0.482) superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73565700 73565700 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022124.5 +1 reviewed p.S2670 0.093 34 0% 27 18.5% 1 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73572245 73572245 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022124.5 +1 reviewed p.P3130H 1.000 47 0% 59 32.2% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SPOCK2 9806 genome.wustl.edu 37 10 73823951 73823951 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014767.2 -1 validated p.A326T 1.000 134 0% 200 22.5% 41 9.7% benign(0.01) tolerated(0.35) neutral(0.021) HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin_1 DNAJB12 54788 genome.wustl.edu 37 10 74103248 74103248 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002762.2 -1 validated p.Y145 1.000 318 0% 306 19.6% 44 40.9% - - - HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain OIT3 170392 genome.wustl.edu 37 10 74684055 74684055 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152635.1 +1 provisional p.S340 0.996 64 1.6% 39 30.8% 0 - - - - HMMPfam_Zona_pellucida,HMMSmart_SM00241 OIT3 170392 genome.wustl.edu 37 10 74684268 74684268 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152635.1 +1 provisional p.K411N 1.000 129 0% 74 9.5% 0 - probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_Zona_pellucida,HMMSmart_SM00241 OIT3 170392 genome.wustl.edu 37 10 74684370 74684370 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152635.1 +1 provisional p.D445 0.986 108 0% 57 14% 0 - - - - HMMPfam_Zona_pellucida,HMMSmart_SM00241 OIT3 170392 genome.wustl.edu 37 10 74692200 74692200 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152635.1 +1 provisional p.R519H 0.931 81 1.2% 70 21.4% 1 100% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL PLA2G12B 84647 genome.wustl.edu 37 10 74700957 74700957 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032562.2 -1 validated p.R146W 1.000 280 0% 122 23% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_PLA2G12,superfamily_PhospholipaseA2 FAM149B1 317662 genome.wustl.edu 37 10 74937677 74937677 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173348.1 +1 validated p.Y76H 1.000 482 0% 355 24.2% 7 57.1% benign(0.113) deleterious(0.01) neutral(0.415) NULL DNAJC9 23234 genome.wustl.edu 37 10 75003169 75003169 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015190.3 -1 provisional p.E258* 1.000 313 0% 333 21.6% 65 21.5% - - - NULL TTC18 118491 genome.wustl.edu 37 10 75071662 75071662 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145170.3 -1 validated p.S435N 1.000 309 0% 116 19.8% 1 100% benign(0.424) tolerated(0.29) neutral(0.167) NULL TTC18 118491 genome.wustl.edu 37 10 75082793 75082793 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145170.3 -1 validated p.L350 1.000 357 0% 235 24.7% 1 0% - - - NULL TTC18 118491 genome.wustl.edu 37 10 75101296 75101296 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145170.3 -1 validated p.G218E 1.000 227 0% 188 23.9% 0 - probably_damaging(0.99) deleterious(0.04) deleterious(0.790) NULL USP54 159195 genome.wustl.edu 37 10 75264678 75264678 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152586.3 -1 provisional p.R1414H 0.999 293 0% 176 11.9% 11 18.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL USP54 159195 genome.wustl.edu 37 10 75276311 75276311 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152586.3 -1 provisional p.H1291 0.001 234 0% 97 19.6% 14 28.5% - - - NULL MYOZ1 58529 genome.wustl.edu 37 10 75397604 75397604 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021245.2 -1 provisional p.S50 0.004 362 0% 265 21.5% 0 - - - - HMMPfam_Calsarcin SYNPO2L 79933 genome.wustl.edu 37 10 75407361 75407361 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114133.1 -1 validated p.A683 0.989 40 0% 55 25.5% 0 - - - - NULL FUT11 170384 genome.wustl.edu 37 10 75533012 75533012 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173540.2 +1 validated p.A258V 0.985 89 0% 117 25.6% 5 20% possibly_damaging(0.833) tolerated(0.12) deleterious(0.578) HMMPfam_Glyco_transf_10 KIAA0913 23053 genome.wustl.edu 37 10 75557153 75557153 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015037.2 +1 validated p.S1151I 1.000 142 0% 105 21% 29 27.5% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL NDST2 8509 genome.wustl.edu 37 10 75563042 75563042 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003635.3 -1 reviewed p.P740T 1.000 354 0% 382 19.9% 23 26% possibly_damaging(0.844) tolerated(0.05) deleterious(0.669) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases VCL 7414 genome.wustl.edu 37 10 75854158 75854158 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014000.2 +1 reviewed p.E494D 0.913 115 0% 69 10.1% 25 20% possibly_damaging(0.882) tolerated(0.49) neutral(0.355) HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin ADK 132 genome.wustl.edu 37 10 76349047 76349047 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006721.2 +1 reviewed p.A245V 1.000 197 0% 88 17% 39 33.3% benign(0.002) tolerated(0.27) neutral(0.034) HMMPfam_PfkB,superfamily_Ribokinase-like KAT6B 23522 genome.wustl.edu 37 10 76735539 76735539 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012330.2 +1 validated p.G482C 1.000 305 0.3% 138 18.8% 3 0% probably_damaging(0.998) - - NULL KAT6B 23522 genome.wustl.edu 37 10 76790256 76790256 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012330.2 +1 validated p.P1892S 1.000 342 0% 261 11.5% 15 13.3% probably_damaging(0.999) - - NULL DUSP13 51207 genome.wustl.edu 37 10 76865537 76865537 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007271.1 -1 reviewed p.R153C 0.912 26 0% 20 25% 0 - possibly_damaging(0.509) deleterious(0.02) deleterious(0.553) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 KCNMA1 3778 genome.wustl.edu 37 10 78647073 78647073 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014797.2 -1 reviewed p.S1167F 1.000 173 0% 133 18% 2 0% possibly_damaging(0.455) deleterious(0) deleterious(0.594) NULL KCNMA1 3778 genome.wustl.edu 37 10 78709052 78709052 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014797.2 -1 reviewed p.A799T 1.000 102 0% 35 22.9% 5 20% possibly_damaging(0.577) tolerated(0.14) neutral(0.448) NULL POLR3A 11128 genome.wustl.edu 37 10 79745848 79745848 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007055.3 -1 validated p.D991N 1.000 648 0% 253 20.6% 2 0% benign(0.085) tolerated(0.27) neutral(0.040) HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484 POLR3A 11128 genome.wustl.edu 37 10 79782103 79782103 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007055.3 -1 validated p.R229* 0.991 164 0% 84 21.4% 2 0% - - - HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484 ZMIZ1 57178 genome.wustl.edu 37 10 81053330 81053330 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020338.3 +1 validated p.R384W 1.000 10 0.000 8 0.625 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ZMIZ1 57178 genome.wustl.edu 37 10 81070924 81070924 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020338.3 +1 validated p.P1027S 1.000 50 0% 37 13.5% 7 0% possibly_damaging(0.476) tolerated(0.17) neutral(0.216) NULL PPIF 10105 genome.wustl.edu 37 10 81109459 81109459 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005729.3 +1 reviewed p.G89S 1.000 242 0% 307 25.1% 79 24% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Pro_isomerase,superfamily_CSA_PPIase PPIF 10105 genome.wustl.edu 37 10 81113552 81113552 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005729.3 +1 reviewed p.R193K 1.000 197 0% 180 23.9% 124 40.3% benign(0) tolerated(1) - HMMPfam_Pro_isomerase,superfamily_CSA_PPIase SFTPA1 653509 genome.wustl.edu 37 10 81372076 81372076 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093770.2 +1 reviewed p.G61S 1.000 167 0% 99 27.3% 0 - possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) HMMPfam_Collagen FAM22B 729262 genome.wustl.edu 37 10 81463739 81463739 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429828 +1 known p.S125L 0.047 663 0% 835 12.2% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL FAM22B 729262 genome.wustl.edu 37 10 81465951 81465951 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429828 +1 known p.S179Y 0.009 67 0% 90 12.2% 1 0% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL FAM22B 729262 genome.wustl.edu 37 10 81471468 81471468 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429828 +1 known p.R622C 0.004 205 0.5% 210 14.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C10orf57 80195 genome.wustl.edu 37 10 81841645 81841645 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025125.2 +1 provisional p.L46M 0.599 342 0% 297 22.9% 25 32% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL MAT1A 4143 genome.wustl.edu 37 10 82039978 82039978 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000429.2 -1 reviewed p.L167R 0.999 74 0% 33 21.2% 0 - possibly_damaging(0.457) deleterious(0.03) deleterious(0.514) HMMPfam_S-AdoMet_synt_M,superfamily_S-AdoMet_synt DYDC2 84332 genome.wustl.edu 37 10 82126651 82126651 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032372.4 +1 provisional p.A160T 0.000 102 0% 94 21.3% 1 100% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL FAM213A 84293 genome.wustl.edu 37 10 82185704 82185704 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032333.4 +1 validated p.R118M 0.001 312 0% 200 20.5% 91 45% benign(0.186) tolerated(0.08) neutral(0.318) NULL FAM213A 84293 genome.wustl.edu 37 10 82187096 82187096 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032333.4 +1 validated p.F140L 0.986 351 0% 254 17.7% 62 46.7% possibly_damaging(0.89) deleterious(0) deleterious(0.794) NULL SH2D4B 387694 genome.wustl.edu 37 10 82369292 82369292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207372.2 +1 validated p.A324T 0.968 98 0% 91 22% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL NRG3 10718 genome.wustl.edu 37 10 83635660 83635660 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010848.3 +1 reviewed p.A188 0.965 53 0% 39 10.3% 0 - - - - NULL GHITM 27069 genome.wustl.edu 37 10 85903790 85903790 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014394.2 +1 validated p.A90V 0.999 753 0% 665 23.2% 151 41% benign(0.015) tolerated(0.31) neutral(0.028) NULL CDHR1 92211 genome.wustl.edu 37 10 85968628 85968628 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033100.2 +1 reviewed p.L437 0.012 227 0% 188 22.3% 2 50% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like LDB3 11155 genome.wustl.edu 37 10 88477868 88477868 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007078.2 +1 reviewed p.P608 0.000 242 0.8% 276 20.7% 1 0% - - - superfamily_Glucocorticoid receptor-like (DNA-binding domain) BMPR1A 657 genome.wustl.edu 37 10 88672002 88672002 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004329.2 +1 reviewed p.Y179C 0.997 261 0% 163 17.8% 5 40% possibly_damaging(0.762) tolerated(0.11) deleterious(0.554) NULL MMRN2 79812 genome.wustl.edu 37 10 88702269 88702269 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024756.2 -1 validated p.F758I 0.613 118 0% 185 24.3% 7 0% probably_damaging(0.982) tolerated(0.36) neutral(0.447) NULL AGAP11 119385 genome.wustl.edu 37 10 88768605 88768605 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133447.1 +1 validated p.S199I 0.998 331 0% 243 14.8% 1 0% - - - HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 AGAP11 119385 genome.wustl.edu 37 10 88768860 88768860 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133447.1 +1 validated p.T284M 0.994 104 0% 80 26.3% 1 0% - - - HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 GLUD1 2746 genome.wustl.edu 37 10 88822513 88822513 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005271.3 -1 reviewed p.R274H 1.000 283 0.4% 157 22.9% 72 45.8% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd FAM35A 54537 genome.wustl.edu 37 10 88912531 88912531 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019054.2 +1 validated p.V474I 0.021 222 0% 144 27.1% 15 40% benign(0.003) tolerated(1) - NULL PAPSS2 9060 genome.wustl.edu 37 10 89475543 89475543 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015880.1 +1 reviewed p.G270S 1.000 559 0% 136 16.9% 12 75% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_PUA-like PTEN 5728 genome.wustl.edu 37 10 89653780 89653780 + Splice_Site SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000371953 +1 known e2-2 1.000 476 0% 186 24.2% 0 - - - - - RNLS 55328 genome.wustl.edu 37 10 90034779 90034779 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018363.3 -1 validated p.A296D 0.816 258 0% 82 24.4% 1 0% possibly_damaging(0.529) deleterious(0.02) deleterious(0.561) NULL LIPK 643414 genome.wustl.edu 37 10 90486554 90486554 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080518.1 +1 provisional p.S36 0.961 373 0% 265 19.6% 1 0% - - - HMMPfam_Abhydro_lipase,superfamily_SSF53474 LIPM 340654 genome.wustl.edu 37 10 90575228 90575228 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128215.1 +1 validated p.L276M 0.959 470 0% 250 19.2% 0 - benign(0.03) tolerated(0.31) neutral(0.029) HMMPfam_Abhydrolase_1,superfamily_SSF53474 FAS 355 genome.wustl.edu 37 10 90767546 90767546 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000043.3 +1 reviewed p.H96Y 0.054 289 0% 160 25% 19 36.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like LIPA 3988 genome.wustl.edu 37 10 90974597 90974597 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000235.2 -1 reviewed p.R396S 1.000 47 0% 78 30.8% 34 29.4% benign(0.005) tolerated(0.39) neutral(0.016) superfamily_alpha/beta-Hydrolases LIPA 3988 genome.wustl.edu 37 10 90988026 90988026 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000235.2 -1 reviewed p.S120N 1.000 365 0% 146 18.5% 25 32% benign(0.423) deleterious(0.01) deleterious(0.543) HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases IFIT2 3433 genome.wustl.edu 37 10 91066410 91066410 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001547.4 +1 validated p.E233* 0.003 114 0% 37 16.2% 21 23.8% - - - superfamily_SSF48452 IFIT5 24138 genome.wustl.edu 37 10 91177231 91177231 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012420.2 +1 validated p.R92Q 0.060 197 0% 190 17.9% 35 28.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_SSF48452 IFIT5 24138 genome.wustl.edu 37 10 91178178 91178178 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012420.2 +1 validated p.D408Y 0.000 329 0% 378 20.1% 71 38% benign(0.038) deleterious(0.03) neutral(0.366) superfamily_SSF48452 PANK1 53354 genome.wustl.edu 37 10 91371688 91371688 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148977.1 -1 reviewed p.R274Q 1.000 196 0% 98 19.4% 3 66.6% possibly_damaging(0.845) tolerated(0.09) deleterious(0.621) HMMPfam_Fumble,superfamily_Actin-like ATPase domain KIF20B 9585 genome.wustl.edu 37 10 91468944 91468944 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016195.2 +1 validated p.K56N 1.000 107 0% 104 18.3% 0 - possibly_damaging(0.881) tolerated(0.06) deleterious(0.666) HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF20B 9585 genome.wustl.edu 37 10 91505703 91505703 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016195.2 +1 validated p.E1321D 0.948 335 0% 134 27.6% 4 0% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) NULL KIF20B 9585 genome.wustl.edu 37 10 91533786 91533786 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016195.2 +1 validated p.R1775Q 0.851 133 0% 43 20.9% 12 41.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL HTR7 3363 genome.wustl.edu 37 10 92508971 92508971 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019859.3 -1 reviewed p.R307I 0.979 165 0% 88 21.6% 0 - possibly_damaging(0.91) tolerated(0.1) deleterious(0.649) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ANKRD1 27063 genome.wustl.edu 37 10 92675581 92675581 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014391.2 -1 reviewed p.E236D 1.000 66 0% 10 60% 2 0% benign(0.229) deleterious(0.03) neutral(0.388) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK ANKRD1 27063 genome.wustl.edu 37 10 92678660 92678660 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014391.2 -1 reviewed p.F139V 1.000 362 0% 117 23.1% 1 100% benign(0.001) deleterious(0.01) neutral(0.406) HMMPfam_Ank,superfamily_ANK PCGF5 84333 genome.wustl.edu 37 10 93024196 93024196 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032373.3 +1 provisional p.V194 1.000 483 0% 124 29.8% 10 30% - - - NULL TNKS2 80351 genome.wustl.edu 37 10 93593724 93593724 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025235.3 +1 validated p.L464I 1.000 344 0% 158 13.3% 2 0% benign(0.378) tolerated(0.33) neutral(0.144) HMMPfam_Ank,superfamily_ANK TNKS2 80351 genome.wustl.edu 37 10 93608154 93608154 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025235.3 +1 validated p.S791 0.200 95 1.1% 56 21.4% 9 22.2% - - - NULL BTAF1 9044 genome.wustl.edu 37 10 93722343 93722343 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003972.2 +1 validated p.G438* 1.000 185 0% 100 17% 0 - - - - HMMPfam_HEAT,superfamily_ARM repeat LOC100128302 100128302 genome.wustl.edu 37 10 93879014 93879014 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343006.1 +1 model p.S147T 0.540 353 0% 405 19.3% 0 - - - - NULL IDE 3416 genome.wustl.edu 37 10 94223528 94223528 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004969.3 -1 reviewed p.Y907* 0.993 525 0% 197 24.9% 16 0% - - - superfamily_Metalloenz_metal-bd IDE 3416 genome.wustl.edu 37 10 94225557 94225557 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004969.3 -1 reviewed p.N788K 1.000 674 0% 214 26.6% 7 85.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd EXOC6 54536 genome.wustl.edu 37 10 94694168 94694168 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019053.4 +1 reviewed p.A374V 1.000 272 0% 140 17.1% 3 0% benign(0.071) tolerated(0.29) neutral(0.034) NULL CYP26A1 1592 genome.wustl.edu 37 10 94836946 94836946 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000783.3 +1 reviewed p.A460V 1.000 107 0% 131 23.7% 0 - benign(0.001) tolerated(1) - HMMPfam_p450,superfamily_Cytochrome_P450 MYOF 26509 genome.wustl.edu 37 10 95132730 95132730 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013451.3 -1 reviewed p.A805V 1.000 487 0% 164 18.9% 8 50% benign(0.141) tolerated(0.47) neutral(0.023) HMMPfam_FerB PDE6C 5146 genome.wustl.edu 37 10 95400277 95400277 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006204.3 +1 reviewed p.G567V 1.000 327 0% 91 15.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604 FRA10AC1 118924 genome.wustl.edu 37 10 95430576 95430576 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145246.4 -1 reviewed p.E286* 1.000 484 0% 159 26.4% 23 13% - - - NULL SLC35G1 159371 genome.wustl.edu 37 10 95660593 95660593 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134658.1 +1 validated p.Y148* 1.000 295 0% 214 24.8% 3 66.6% - - - HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE SLC35G1 159371 genome.wustl.edu 37 10 95660892 95660892 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134658.1 +1 validated p.S248Y 1.000 300 0% 243 26.3% 0 - probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_DUF6 CYP2C9 1559 genome.wustl.edu 37 10 96698519 96698519 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000771.3 +1 reviewed p.G27E 0.003 363 0% 90 20% 0 - possibly_damaging(0.627) tolerated(0.06) deleterious(0.541) NULL C10orf129 142827 genome.wustl.edu 37 10 96985146 96985146 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207321.2 +1 validated p.M434V 0.012 383 0% 194 14.4% 0 - benign(0) tolerated(0.6) neutral(0.004) superfamily_Acetyl-CoA synthetase-like C10orf129 142827 genome.wustl.edu 37 10 96988522 96988522 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207321.2 +1 validated p.A475V 0.016 749 0% 522 12.3% 0 - possibly_damaging(0.95) deleterious(0) deleterious(0.838) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like SORBS1 10580 genome.wustl.edu 37 10 97106200 97106200 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001034954.1 -1 validated p.A798T 1.000 339 0.3% 216 25% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain CCNJ 54619 genome.wustl.edu 37 10 97817914 97817914 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134375.1 +1 validated p.V356 0.995 521 0% 284 21.8% 11 63.6% - - - NULL ZNF518A 9849 genome.wustl.edu 37 10 97917118 97917118 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000371192 +1 known p.V347L 0.201 106 0% 46 15.2% 1 0% - - - NULL TLL2 7093 genome.wustl.edu 37 10 98240216 98240216 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012465.3 -1 validated p.A59V 1.000 456 0% 264 23.1% 3 0% benign(0.001) tolerated(0.13) neutral(0.253) NULL PIK3AP1 118788 genome.wustl.edu 37 10 98380159 98380159 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152309.2 -1 validated p.E631* 1.000 114 0% 32 25% 6 0% - - - NULL LCOR 84458 genome.wustl.edu 37 10 98715360 98715360 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032440.3 +1 validated p.S328L 1.000 120 0.8% 80 21.2% 0 - probably_damaging(0.99) deleterious(0.02) deleterious(0.825) NULL SLIT1 6585 genome.wustl.edu 37 10 98770819 98770819 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003061.2 -1 validated p.R1091H 1.000 97 0% 104 18.3% 0 - benign(0.002) tolerated(0.12) neutral(0.261) HMMSmart_SM00179,HMMSmart_SM00274,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin ARHGAP19 84986 genome.wustl.edu 37 10 99019330 99019330 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032900.4 -1 validated p.R223 0.999 1203 0.1% 512 22.1% 0 - - - - HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP RRP12 23223 genome.wustl.edu 37 10 99126306 99126306 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015179.3 -1 validated p.E1096D 0.999 159 0% 150 18.7% 62 61.2% benign(0) tolerated(0.55) neutral(0.007) NULL RRP12 23223 genome.wustl.edu 37 10 99130489 99130489 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015179.3 -1 validated p.T856N 0.743 166 0% 142 21.1% 41 46.3% benign(0.308) tolerated(0.39) neutral(0.112) superfamily_ARM repeat ZFYVE27 118813 genome.wustl.edu 37 10 99512797 99512797 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002261.3 +1 reviewed p.E305 1.000 31 0% 32 18.8% 19 21% - - - superfamily_FYVE_PHD_ZnF LOC100289281 100289281 genome.wustl.edu 37 10 99527391 99527391 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343028.1 +1 model p.M1I 1.000 58 0% 62 27.4% 0 - - - - NULL CRTAC1 55118 genome.wustl.edu 37 10 99640121 99640121 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000298819 -1 known p.S554L 0.358 122 0% 71 18.3% 1 0% benign(0.104) - - NULL LOXL4 84171 genome.wustl.edu 37 10 100010824 100010824 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032211.6 -1 reviewed p.T733I 1.000 87 0% 60 25% 5 40% benign(0) tolerated(1) - HMMPfam_Lysyl_oxidase PYROXD2 84795 genome.wustl.edu 37 10 100150791 100150791 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032709.2 -1 validated p.R371W 1.000 133 0% 79 30.4% 8 37.5% probably_damaging(0.982) deleterious(0.01) deleterious(0.832) superfamily_SSF51905 HPS1 3257 genome.wustl.edu 37 10 100184109 100184109 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000195.2 -1 reviewed p.A453V 1.000 80 0% 85 20% 56 41% benign(0.003) tolerated(0.12) neutral(0.261) NULL HPS1 3257 genome.wustl.edu 37 10 100190387 100190387 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000195.2 -1 reviewed p.L237I 1.000 126 0% 101 18.8% 74 32.4% probably_damaging(0.999) tolerated(0.13) deleterious(0.743) NULL GOT1 2805 genome.wustl.edu 37 10 101163590 101163590 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002079.2 -1 reviewed p.G228 1.000 174 0% 55 32.7% 32 25% - - - HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases GOT1 2805 genome.wustl.edu 37 10 101165531 101165531 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002079.2 -1 reviewed p.Q208H 1.000 151 0% 66 36.4% 30 13.3% benign(0.247) deleterious(0) deleterious(0.470) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases SLC25A28 81894 genome.wustl.edu 37 10 101370626 101370626 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031212.3 -1 validated p.E359K 1.000 222 0% 148 18.9% 126 37.3% benign(0.022) tolerated(0.05) neutral(0.346) NULL SLC25A28 81894 genome.wustl.edu 37 10 101370908 101370908 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031212.3 -1 validated p.V265I 0.999 236 0% 157 22.9% 47 29.7% benign(0.039) tolerated(0.62) neutral(0.006) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr SLC25A28 81894 genome.wustl.edu 37 10 101370931 101370931 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031212.3 -1 validated p.R257I 1.000 243 0% 168 13.7% 57 22.8% probably_damaging(0.988) deleterious(0.03) deleterious(0.802) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr SLC25A28 81894 genome.wustl.edu 37 10 101370995 101370995 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031212.3 -1 validated p.V236I 1.000 187 0% 111 25.2% 75 33.3% benign(0.009) tolerated(1) neutral(0.001) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr ABCC2 1244 genome.wustl.edu 37 10 101567276 101567276 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000392.3 +1 reviewed p.L556M 0.928 233 0% 78 24.4% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC2 1244 genome.wustl.edu 37 10 101579027 101579027 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000392.3 +1 reviewed e19+1 1.000 176 0% 91 17.6% 0 - - - - - ABCC2 1244 genome.wustl.edu 37 10 101590174 101590174 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000392.3 +1 reviewed p.R911* 0.788 216 0% 173 22% 0 - - - - NULL ABCC2 1244 genome.wustl.edu 37 10 101590500 101590500 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000392.3 +1 reviewed p.K925 0.852 170 0% 127 13.4% 0 - - - - NULL DNMBP 23268 genome.wustl.edu 37 10 101639896 101639896 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015221.2 -1 validated p.S1407Y 0.001 439 0.2% 264 22.7% 10 50% possibly_damaging(0.502) deleterious(0.01) deleterious(0.573) NULL DNMBP 23268 genome.wustl.edu 37 10 101640022 101640022 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015221.2 -1 validated p.S1365Y 1.000 90 0% 60 26.7% 12 25% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL DNMBP 23268 genome.wustl.edu 37 10 101646143 101646143 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015221.2 -1 validated p.L1178I 1.000 162 0% 165 23% 6 66.6% probably_damaging(0.999) tolerated(0.21) deleterious(0.534) HMMPfam_BAR,HMMSmart_SM00721 CPN1 1369 genome.wustl.edu 37 10 101823460 101823460 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001308.2 -1 reviewed p.A261V 1.000 210 0% 127 26% 0 - probably_damaging(1) tolerated(0.36) deleterious(0.520) HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases ERLIN1 10613 genome.wustl.edu 37 10 101945361 101945361 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100626.1 -1 validated p.V8G 0.998 109 0% 182 25.3% 12 33.3% possibly_damaging(0.903) deleterious(0.01) deleterious(0.764) NULL CWF19L1 55280 genome.wustl.edu 37 10 101996624 101996624 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018294.4 -1 validated p.H453Y 1.000 474 0% 372 21.2% 33 33.3% benign(0.025) tolerated(0.16) neutral(0.060) HMMPfam_CwfJ_C_2 CWF19L1 55280 genome.wustl.edu 37 10 102020758 102020758 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018294.4 -1 validated p.A51D 1.000 227 0% 140 19.3% 8 62.5% benign(0.019) deleterious(0.03) neutral(0.365) NULL PKD2L1 9033 genome.wustl.edu 37 10 102052761 102052761 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016112.2 -1 reviewed p.V608 0.970 283 0% 238 24.8% 0 - - - - NULL SCD 6319 genome.wustl.edu 37 10 102112122 102112122 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005063.4 +1 validated e3-1 0.998 212 0% 176 19.3% 1 100% - - - - SEC31B 25956 genome.wustl.edu 37 10 102257899 102257899 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015490.3 -1 reviewed p.L584 1.000 334 0% 171 18.7% 3 33.3% - - - NULL SEC31B 25956 genome.wustl.edu 37 10 102269110 102269110 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015490.3 -1 reviewed p.T121M 0.821 180 0% 114 21.1% 0 - probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 HIF1AN 55662 genome.wustl.edu 37 10 102300403 102300403 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017902.2 +1 validated p.Q147 1.000 330 0% 266 22.6% 16 62.5% - - - HMMSmart_JmjC,superfamily_SSF51197 FAM178A 55719 genome.wustl.edu 37 10 102690807 102690807 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136123.1 +1 validated p.P803H 1.000 646 0% 806 12.8% 4 25% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL FAM178A 55719 genome.wustl.edu 37 10 102706864 102706864 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136123.1 +1 validated p.Q1001 1.000 183 0% 154 25.3% 1 0% - - - NULL MRPL43 84545 genome.wustl.edu 37 10 102746553 102746553 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176794.1 -1 reviewed p.F140L 0.000 209 0% 186 23.1% 229 38.8% benign(0) tolerated(0.64) neutral(0.003) NULL C10orf2 56652 genome.wustl.edu 37 10 102748320 102748320 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021830.4 +1 reviewed p.A118V 0.998 71 0% 110 20.9% 9 44.4% benign(0.001) tolerated(0.53) neutral(0.007) NULL C10orf2 56652 genome.wustl.edu 37 10 102748706 102748706 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021830.4 +1 reviewed p.L247M 1.000 93 0% 114 12.3% 8 37.5% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL POLL 27343 genome.wustl.edu 37 10 103339346 103339346 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013274.3 -1 reviewed p.A531V 1.000 87 0% 87 16.1% 59 27.1% probably_damaging(0.971) deleterious(0.01) deleterious(0.819) HMMSmart_POLXc,superfamily_SSF81301 POLL 27343 genome.wustl.edu 37 10 103345794 103345794 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013274.3 -1 reviewed p.G79C 0.715 58 0% 60 23.3% 14 35.7% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) superfamily_BRCT DPCD 25911 genome.wustl.edu 37 10 103360506 103360506 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015448.1 +1 provisional p.R53C 1.000 61 0% 42 14.3% 80 33.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FBXW4 6468 genome.wustl.edu 37 10 103427724 103427724 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022039.3 -1 reviewed p.A230V 1.000 129 0% 55 23.6% 61 21.3% benign(0.098) tolerated(0.1) neutral(0.294) superfamily_WD40_like FGF8 2253 genome.wustl.edu 37 10 103534668 103534668 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033163.2 -1 reviewed p.V53G 1.000 117 0% 170 24.7% 0 - probably_damaging(0.977) tolerated(0.13) deleterious(0.671) NULL FGF8 2253 genome.wustl.edu 37 10 103534951 103534951 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033163.2 -1 reviewed p.A31V 0.561 7 0.000 10 0.400 0 - benign(0.201) tolerated(0.18) neutral(0.075) NULL NPM3 10360 genome.wustl.edu 37 10 103542289 103542289 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006993.2 -1 reviewed p.D90 0.998 314 0% 348 26.4% 238 46.2% - - - HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin MGEA5 10724 genome.wustl.edu 37 10 103546339 103546339 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012215.3 -1 validated p.R874W 1.000 154 0% 184 13% 37 13.5% probably_damaging(0.994) tolerated(0.14) deleterious(0.702) superfamily_Acyl-CoA N-acyltransferases (Nat) LDB1 8861 genome.wustl.edu 37 10 103867901 103867901 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113407.1 -1 validated p.P395 0.989 433 0% 349 24.1% 89 44.9% - - - HMMPfam_LIM_bind GBF1 8729 genome.wustl.edu 37 10 104135318 104135318 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004193.1 +1 provisional p.A1287V 1.000 75 0% 59 25.4% 28 42.8% benign(0) tolerated(0.37) neutral(0.019) NULL GBF1 8729 genome.wustl.edu 37 10 104136897 104136897 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004193.1 +1 provisional p.D1497 1.000 72 0% 53 15.1% 21 47.6% - - - NULL GBF1 8729 genome.wustl.edu 37 10 104139316 104139316 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004193.1 +1 provisional p.R1561W 0.988 159 0% 105 25.7% 60 61.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NFKB2 4791 genome.wustl.edu 37 10 104157155 104157155 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077494.1 +1 validated p.Q164H 0.997 96 0% 115 22.6% 69 37.6% possibly_damaging(0.9) tolerated(0.13) deleterious(0.609) superfamily_p53-like transcription factors,HMMPfam_RHD PSD 5662 genome.wustl.edu 37 10 104164757 104164757 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002779.3 -1 provisional p.S818I 1.000 68 0% 101 28.7% 14 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like PSD 5662 genome.wustl.edu 37 10 104170824 104170824 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002779.3 -1 provisional p.L664 0.999 130 0% 164 19.5% 1 0% - - - HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain CUEDC2 79004 genome.wustl.edu 37 10 104183283 104183283 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024040.2 -1 validated p.T255I 1.000 374 0% 329 21.3% 270 47% possibly_damaging(0.937) tolerated(0.65) neutral(0.386) NULL CUEDC2 79004 genome.wustl.edu 37 10 104184459 104184459 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024040.2 -1 validated p.E55D 0.996 79 0% 81 18.5% 139 47.4% possibly_damaging(0.527) tolerated(0.19) neutral(0.227) NULL SFXN2 118980 genome.wustl.edu 37 10 104492639 104492639 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178858.4 +1 validated p.R249 0.995 354 0% 260 20.8% 4 50% - - - HMMPfam_Mtc CNNM2 54805 genome.wustl.edu 37 10 104679767 104679767 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017649.3 +1 validated p.P510 0.992 472 0% 450 11.6% 8 12.5% - - - HMMPfam_CBS CNNM2 54805 genome.wustl.edu 37 10 104836891 104836891 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017649.3 +1 validated p.T861M 0.956 69 0% 93 14% 9 44.4% benign(0.14) deleterious(0.02) neutral(0.395) NULL NT5C2 22978 genome.wustl.edu 37 10 104859732 104859732 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134373.1 -1 validated p.R195Q 1.000 212 0% 153 24.8% 16 25% benign(0.193) tolerated(0.15) neutral(0.259) HMMPfam_5_nucleotid NT5C2 22978 genome.wustl.edu 37 10 104934693 104934693 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134373.1 -1 validated p.R8Q 1.000 470 0% 211 25.1% 16 62.5% benign(0.253) tolerated(0.06) neutral(0.349) NULL TAF5 6877 genome.wustl.edu 37 10 105145247 105145247 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006951.3 +1 reviewed p.R610Q 1.000 191 0% 105 18.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 PDCD11 22984 genome.wustl.edu 37 10 105179315 105179315 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014976.1 +1 validated p.A709 0.042 275 0% 184 29.3% 9 33.3% - - - NULL PDCD11 22984 genome.wustl.edu 37 10 105183331 105183331 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014976.1 +1 validated p.K893N 0.942 258 0% 155 10.3% 18 16.6% possibly_damaging(0.676) tolerated(0.5) neutral(0.251) HMMSmart_S1 PDCD11 22984 genome.wustl.edu 37 10 105185001 105185001 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014976.1 +1 validated p.K1008N 0.001 256 0% 133 20.3% 20 35% benign(0.003) tolerated(0.06) neutral(0.323) NULL CALHM3 119395 genome.wustl.edu 37 10 105233422 105233422 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129742.1 -1 validated p.A195T 1.000 17 0% 20 25% 0 - possibly_damaging(0.796) tolerated(0.06) deleterious(0.621) NULL SH3PXD2A 9644 genome.wustl.edu 37 10 105484058 105484058 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014631.2 -1 validated p.A123V 1.000 98 0% 49 24.5% 1 0% possibly_damaging(0.856) deleterious(0.02) deleterious(0.714) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain COL17A1 1308 genome.wustl.edu 37 10 105793988 105793988 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000494.3 -1 reviewed p.G1291C 0.000 31 0% 20 25% 0 - unknown(0) tolerated(0.05) - NULL COL17A1 1308 genome.wustl.edu 37 10 105815561 105815561 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000494.3 -1 reviewed p.L556I 0.080 230 0% 232 10.8% 0 - unknown(0) deleterious(0.05) - NULL COL17A1 1308 genome.wustl.edu 37 10 105819433 105819433 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000494.3 -1 reviewed p.A395 0.763 443 0% 474 21.1% 0 - - - - NULL WDR96 80217 genome.wustl.edu 37 10 105985275 105985275 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025145.5 -1 provisional p.Y120 0.994 248 0% 193 20.7% 4 50% - - - superfamily_WD40 repeat-like ITPRIP 85450 genome.wustl.edu 37 10 106074458 106074458 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033397.2 -1 provisional p.A451V 0.109 29 3.4% 21 19% 5 40% benign(0) tolerated(0.34) neutral(0.023) NULL ITPRIP 85450 genome.wustl.edu 37 10 106075104 106075104 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033397.2 -1 provisional p.D236Y 1.000 34 0% 17 35.3% 4 50% possibly_damaging(0.924) deleterious(0.05) deleterious(0.718) NULL ITPRIP 85450 genome.wustl.edu 37 10 106075746 106075746 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033397.2 -1 provisional p.L22 1.000 42 0% 66 27.3% 4 25% - - - NULL CCDC147 159686 genome.wustl.edu 37 10 106118174 106118174 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008723.1 +1 validated p.E29* 0.997 149 0% 135 20% 0 - - - - NULL CCDC147 159686 genome.wustl.edu 37 10 106139857 106139857 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008723.1 +1 validated p.R415M 1.000 222 0% 64 12.5% 0 - probably_damaging(0.965) deleterious(0.01) deleterious(0.812) NULL CCDC147 159686 genome.wustl.edu 37 10 106152000 106152000 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008723.1 +1 validated p.N459H 0.967 204 0% 79 17.7% 0 - benign(0.001) tolerated(0.54) neutral(0.007) NULL CCDC147 159686 genome.wustl.edu 37 10 106160512 106160512 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008723.1 +1 validated p.K630N 1.000 307 0.3% 99 29.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SORCS3 22986 genome.wustl.edu 37 10 107015516 107015516 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014978.1 +1 reviewed p.K1098N 1.000 373 0.3% 272 22.4% 0 - probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL SORCS1 114815 genome.wustl.edu 37 10 108469002 108469002 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013031.1 -1 reviewed p.Q374H 1.000 279 0% 90 15.6% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_VPS10,superfamily_SSF110296 SORCS1 114815 genome.wustl.edu 37 10 108536435 108536435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013031.1 -1 reviewed p.D248N 1.000 363 0% 104 25% 0 - probably_damaging(1) tolerated(0.12) deleterious(0.760) HMMSmart_VPS10,superfamily_SSF110296 ADD3 120 genome.wustl.edu 37 10 111876169 111876169 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016824.3 +1 reviewed e3+1 1.000 372 0% 150 20.7% 0 - - - - - SMNDC1 10285 genome.wustl.edu 37 10 112063322 112063322 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005871.3 -1 reviewed p.Q8 1.000 294 0% 454 21.6% 5 60% - - - NULL PDCD4 27250 genome.wustl.edu 37 10 112641153 112641153 + Missense_Mutation SNP G G A rs184353935 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014456.3 +1 reviewed p.R69Q 1.000 204 0% 136 15.4% 29 6.8% probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL PDCD4 27250 genome.wustl.edu 37 10 112653867 112653867 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014456.3 +1 reviewed p.E337* 1.000 287 0% 132 23.5% 49 6.1% - - - HMMPfam_MA3,HMMSmart_SM00544 ADRA2A 150 genome.wustl.edu 37 10 112838030 112838030 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000681.3 +1 reviewed p.S92 0.066 62 0% 91 27.5% 4 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like VTI1A 143187 genome.wustl.edu 37 10 114428033 114428033 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145206.2 +1 validated p.R162* 1.000 510 0% 284 12.7% 13 0% - - - HMMSmart_t_SNARE,HMMPfam_V-SNARE HABP2 3026 genome.wustl.edu 37 10 115334054 115334054 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004132.3 +1 reviewed p.T38I 0.973 278 0% 101 15.8% 4 25% benign(0.052) deleterious(0) neutral(0.448) NULL HABP2 3026 genome.wustl.edu 37 10 115337003 115337003 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004132.3 +1 reviewed p.Y142 0.996 224 0% 124 22.6% 2 100% unknown(0) - - HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin HABP2 3026 genome.wustl.edu 37 10 115341667 115341667 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004132.3 +1 reviewed p.P291S 0.000 169 0% 102 13.7% 3 33.3% benign(0.008) deleterious(0.04) neutral(0.349) superfamily_Kringle-like NRAP 4892 genome.wustl.edu 37 10 115381650 115381650 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198060.2 -1 validated p.K916M 1.000 183 0% 71 21.1% 0 - probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMPfam_Nebulin,HMMSmart_SM00227 NRAP 4892 genome.wustl.edu 37 10 115385888 115385888 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198060.2 -1 validated p.R721M 0.251 176 0% 62 17.7% 0 - possibly_damaging(0.803) deleterious(0.05) deleterious(0.648) HMMPfam_Nebulin,HMMSmart_SM00227 CASP7 840 genome.wustl.edu 37 10 115489170 115489170 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033340.2 +1 reviewed p.S250Y 1.000 200 0% 62 32.3% 32 28.1% unknown(0) - - HMMSmart_SM00115 C10orf81 79949 genome.wustl.edu 37 10 115526207 115526207 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000369310 +1 known p.C16 1.000 302 0% 115 13% 2 0% - - - HMMSmart_SM00233,superfamily_PH domain-like C10orf81 79949 genome.wustl.edu 37 10 115529545 115529545 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000369310 +1 known p.E140D 0.160 203 0% 96 18.8% 2 0% probably_damaging(0.98) tolerated(0.31) neutral(0.451) NULL DCLRE1A 9937 genome.wustl.edu 37 10 115609302 115609302 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014881.3 -1 provisional p.L521S 0.003 227 0% 292 25.3% 10 30% benign(0.037) tolerated(0.31) neutral(0.029) NULL NHLRC2 374354 genome.wustl.edu 37 10 115618341 115618341 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198514.2 +1 provisional p.G78V 1.000 379 0% 440 21.6% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Thioredoxin-like NHLRC2 374354 genome.wustl.edu 37 10 115639384 115639384 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198514.2 +1 provisional p.S280Y 1.000 82 0% 39 30.8% 3 0% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_NHL,superfamily_NHL repeat ADRB1 153 genome.wustl.edu 37 10 115804638 115804638 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000684.2 +1 reviewed p.R249 1.000 12 0% 19 42.1% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like C10orf118 55088 genome.wustl.edu 37 10 115895663 115895663 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018017.2 -1 validated p.T500I 1.000 812 0% 350 20.3% 2 50% probably_damaging(0.998) tolerated(0.26) deleterious(0.508) NULL C10orf118 55088 genome.wustl.edu 37 10 115922556 115922556 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018017.2 -1 validated p.A158T 0.501 279 0% 237 11.8% 2 0% benign(0.001) deleterious(0.02) neutral(0.383) NULL TDRD1 56165 genome.wustl.edu 37 10 115971782 115971782 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198795.1 +1 reviewed p.K606 0.995 271 0% 66 24.2% 0 - - - - HMMPfam_TUDOR TDRD1 56165 genome.wustl.edu 37 10 115973331 115973331 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198795.1 +1 reviewed p.D686 0.000 208 0% 73 20.5% 0 - - - - NULL TDRD1 56165 genome.wustl.edu 37 10 115980525 115980525 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198795.1 +1 reviewed p.A898V 0.000 286 0% 78 21.8% 0 - benign(0) tolerated(0.22) neutral(0.042) NULL TDRD1 56165 genome.wustl.edu 37 10 115987003 115987003 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198795.1 +1 reviewed p.V1116 0.979 311 0.3% 154 11% 0 - - - - NULL VWA2 340706 genome.wustl.edu 37 10 116044706 116044706 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198496.1 +1 provisional p.A325V 1.000 91 0% 107 24.3% 0 - possibly_damaging(0.929) deleterious(0.02) deleterious(0.759) HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196 AFAP1L2 84632 genome.wustl.edu 37 10 116073750 116073750 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001936.1 -1 validated p.S224 0.915 253 0% 237 19% 34 41.1% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ABLIM1 3983 genome.wustl.edu 37 10 116335207 116335207 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002313.5 -1 reviewed p.Y177 1.000 124 0% 55 14.5% 2 50% - - - HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) FAM160B1 57700 genome.wustl.edu 37 10 116590658 116590658 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020940.3 +1 validated p.K31N 1.000 552 0% 482 20.7% 2 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL ATRNL1 26033 genome.wustl.edu 37 10 117185792 117185792 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207303.2 +1 validated p.P1101L 1.000 627 0.2% 457 12.9% 0 - probably_damaging(0.999) tolerated(0.07) deleterious(0.809) HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin C10orf96 374355 genome.wustl.edu 37 10 118117392 118117392 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198515.2 +1 validated p.L199 0.633 292 0% 102 12.7% 0 - - - - NULL PNLIP 5406 genome.wustl.edu 37 10 118306806 118306806 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000936.2 +1 reviewed p.G16V 0.991 176 0% 110 11.8% 0 - possibly_damaging(0.757) deleterious(0) deleterious(0.724) NULL HSPA12A 259217 genome.wustl.edu 37 10 118441358 118441358 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025015.2 -1 validated p.S289N 1.000 283 0% 191 24.1% 1 0% benign(0.106) tolerated(0.18) neutral(0.064) NULL KIAA1598 57698 genome.wustl.edu 37 10 118713641 118713641 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127211.1 -1 validated p.E116D 1.000 351 0% 137 16.8% 9 33.3% probably_damaging(0.994) tolerated(0.49) neutral(0.463) NULL VAX1 11023 genome.wustl.edu 37 10 118891804 118891804 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199131.2 -1 reviewed p.K159 0.000 200 0% 324 22.2% 0 - - - - HMMSmart_SM00389 KCNK18 338567 genome.wustl.edu 37 10 118957092 118957092 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181840.1 +1 provisional p.V31 1.000 169 0% 99 26.3% 0 - - - - superfamily_SSF81324 SLC18A2 6571 genome.wustl.edu 37 10 119029887 119029887 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003054.4 +1 reviewed p.W451* 1.000 760 0% 270 18.1% 2 0% - - - superfamily_MFS general substrate transporter PDZD8 118987 genome.wustl.edu 37 10 119049712 119049712 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173791.3 -1 provisional p.L416F 1.000 111 0% 21 19% 15 33.3% possibly_damaging(0.82) deleterious(0.01) deleterious(0.716) HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ RAB11FIP2 22841 genome.wustl.edu 37 10 119798620 119798620 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014904.2 -1 validated p.N376 1.000 663 0% 579 21.6% 0 - - - - NULL LOC100287264 100287264 genome.wustl.edu 37 10 120354424 120354424 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343034.1 +1 model p.G225S 1.000 28 0% 13 30.8% 0 - - - - NULL EIF3A 8661 genome.wustl.edu 37 10 120802268 120802268 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003750.2 -1 validated p.E922* 1.000 100 0% 102 24.5% 73 0% - - - NULL FAM45A 404636 genome.wustl.edu 37 10 120889095 120889095 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207009.2 +1 validated p.L255M 1.000 901 0% 347 25.6% 12 41.6% probably_damaging(0.995) tolerated(0.11) deleterious(0.729) NULL TIAL1 7073 genome.wustl.edu 37 10 121337031 121337031 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033925.1 -1 reviewed p.Q240 1.000 325 0% 132 17.4% 49 48.9% - - - HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 TIAL1 7073 genome.wustl.edu 37 10 121338347 121338347 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033925.1 -1 reviewed e7-1 1.000 262 0% 92 17.4% 0 - - - - - INPP5F 22876 genome.wustl.edu 37 10 121569695 121569695 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014937.2 +1 reviewed p.N551 1.000 390 0% 252 12.3% 1 0% - - - NULL SEC23IP 11196 genome.wustl.edu 37 10 121677347 121677347 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007190.2 +1 reviewed e9-1 1.000 62 0% 26 38.5% 0 - - - - - WDR11 55717 genome.wustl.edu 37 10 122633379 122633379 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018117.11 +1 reviewed p.Y500 1.000 162 0% 102 19.6% 17 23.5% - - - superfamily_WD40_like TACC2 10579 genome.wustl.edu 37 10 123842457 123842457 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.G148* 0.007 28 0% 27 14.8% 0 - - - - NULL TACC2 10579 genome.wustl.edu 37 10 123843456 123843456 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.H481Y 0.000 167 0% 76 21.1% 1 0% benign(0.202) tolerated(0.06) neutral(0.342) NULL TACC2 10579 genome.wustl.edu 37 10 123843513 123843513 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.H500Y 0.000 244 0% 147 21.1% 0 - benign(0.003) tolerated(0.1) neutral(0.286) NULL TACC2 10579 genome.wustl.edu 37 10 123845667 123845667 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.D1218Y 0.000 61 0% 53 18.9% 0 - possibly_damaging(0.861) deleterious(0.02) deleterious(0.716) NULL TACC2 10579 genome.wustl.edu 37 10 123846428 123846428 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.Q1471H 0.000 63 0% 35 14.3% 2 100% possibly_damaging(0.745) deleterious(0) deleterious(0.718) NULL TACC2 10579 genome.wustl.edu 37 10 123846553 123846553 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.G1513V 0.000 63 0% 41 14.6% 2 100% benign(0.328) tolerated(0.11) neutral(0.374) NULL TACC2 10579 genome.wustl.edu 37 10 123848153 123848153 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000515273 +1 known p.D1874N 0.000 167 0% 100 23% 0 - unknown(0) - - NULL TACC2 10579 genome.wustl.edu 37 10 123987479 123987479 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206862.2 +1 reviewed p.L2618M 1.000 105 0% 62 9.7% 15 26.6% probably_damaging(0.97) tolerated(0.11) deleterious(0.684) NULL PLEKHA1 59338 genome.wustl.edu 37 10 124166101 124166101 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001974.1 +1 validated p.A85V 1.000 225 0% 90 26.7% 13 23% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 PLEKHA1 59338 genome.wustl.edu 37 10 124172444 124172444 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001974.1 +1 validated p.K117 1.000 209 0% 63 23.8% 10 50% - - - superfamily_SSF50729 DMBT1 1755 genome.wustl.edu 37 10 124345681 124345681 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007329.2 +1 reviewed p.S522I 0.011 426 0% 189 17.5% 0 - possibly_damaging(0.918) tolerated(0.2) neutral(0.417) HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like DMBT1 1755 genome.wustl.edu 37 10 124380767 124380767 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007329.2 +1 reviewed p.G1698C 0.997 244 0% 92 20.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like C10orf120 399814 genome.wustl.edu 37 10 124457758 124457758 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010912.1 -1 predicted p.H167Y 0.869 341 0% 344 22.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL CUZD1 50624 genome.wustl.edu 37 10 124596388 124596388 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022034.4 -1 provisional p.S259F 1.000 208 0% 84 14.3% 1 0% benign(0.045) tolerated(0.74) neutral(0.004) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain IKZF5 64376 genome.wustl.edu 37 10 124753469 124753469 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022466.5 -1 provisional p.L363M 1.000 206 0% 158 18.4% 8 50% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) NULL ACADSB 36 genome.wustl.edu 37 10 124800183 124800183 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001609.3 +1 reviewed p.E169* 0.996 223 0% 96 18.8% 2 0% - - - HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like CPXM2 119587 genome.wustl.edu 37 10 125539749 125539749 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198148.2 -1 validated p.R304 1.000 617 0% 260 14.6% 6 0% - - - NULL CPXM2 119587 genome.wustl.edu 37 10 125650996 125650996 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198148.2 -1 validated p.P60 0.001 16 0% 20 30% 4 50% - - - NULL CHST15 51363 genome.wustl.edu 37 10 125771886 125771886 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015892.2 -1 validated p.K486 0.172 285 0% 214 22.9% 9 55.5% - - - HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases LHPP 64077 genome.wustl.edu 37 10 126205791 126205791 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022126.3 +1 validated p.A223T 1.000 131 0% 105 18.1% 28 42.8% probably_damaging(0.975) deleterious(0) deleterious(0.861) HMMPfam_Hydrolase,superfamily_SSF56784 ZRANB1 54764 genome.wustl.edu 37 10 126631521 126631521 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017580.2 +1 validated p.W153* 1.000 331 0% 148 23% 11 45.4% - - - HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_SSF90209 ZRANB1 54764 genome.wustl.edu 37 10 126660593 126660593 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017580.2 +1 validated p.Q354 1.000 218 0% 54 11.1% 14 21.4% - - - NULL ZRANB1 54764 genome.wustl.edu 37 10 126662268 126662268 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017580.2 +1 validated p.D404A 1.000 424 0% 139 11.5% 17 17.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CTBP2 1488 genome.wustl.edu 37 10 126683158 126683158 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022802.2 -1 reviewed p.S760 1.000 218 0% 139 21.6% 80 43.7% - - - HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd C10orf137 26098 genome.wustl.edu 37 10 127434402 127434402 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015608.2 +1 validated p.T872M 0.986 329 0% 117 30.8% 5 40% benign(0.016) tolerated(0.6) neutral(0.005) NULL C10orf137 26098 genome.wustl.edu 37 10 127436518 127436518 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015608.2 +1 validated p.Q986 1.000 189 0% 58 29.3% 6 33.3% - - - NULL MMP21 118856 genome.wustl.edu 37 10 127458926 127458926 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147191.1 -1 reviewed p.R405I 0.949 554 0% 564 21.3% 0 - benign(0.013) tolerated(0.08) neutral(0.300) superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120 UROS 7390 genome.wustl.edu 37 10 127486632 127486632 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000375.2 -1 reviewed e6+2 0.816 448 0% 251 18.7% 0 - - - - - ADAM12 8038 genome.wustl.edu 37 10 127797212 127797212 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003474.4 -1 reviewed p.L234M 0.999 680 0.1% 245 13.1% 0 - benign(0.009) tolerated(0.24) neutral(0.038) "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" C10orf90 118611 genome.wustl.edu 37 10 128193535 128193535 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004298.2 -1 validated p.Q78H 0.260 279 0% 297 25.3% 0 - possibly_damaging(0.815) deleterious(0.03) deleterious(0.672) NULL DOCK1 1793 genome.wustl.edu 37 10 128780220 128780220 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398025 +1 known p.A70 0.005 667 0% 333 19.2% 1 100% - - - superfamily_SH3 DOCK1 1793 genome.wustl.edu 37 10 128829958 128829958 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398025 +1 known p.L536 1.000 201 0% 158 31% 5 60% - - - NULL DOCK1 1793 genome.wustl.edu 37 10 129183158 129183158 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398025 +1 known p.Y1349* 1.000 205 0% 128 16.4% 10 0% - - - NULL MKI67 4288 genome.wustl.edu 37 10 129901889 129901889 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.A2739S 0.000 326 0% 152 20.4% 33 57.5% benign(0.009) tolerated(0.33) neutral(0.025) HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129904023 129904023 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.Q2027H 0.000 849 0% 333 18.9% 14 35.7% benign(0.388) tolerated(0.17) neutral(0.183) HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129904891 129904891 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.R1738I 0.000 772 0% 399 22.6% 12 33.3% probably_damaging(0.955) tolerated(0.09) deleterious(0.695) HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129905532 129905532 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.F1524L 0.000 955 0.1% 461 19.3% 13 38.4% benign(0.009) tolerated(1) neutral(0.001) HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129905847 129905847 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.H1419 0.000 868 0% 471 20.8% 9 22.2% - - - HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129906081 129906081 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.Q1341H 0.000 455 0.2% 255 13.7% 3 0% probably_damaging(0.983) deleterious(0.03) deleterious(0.793) HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129913208 129913208 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.N488K 0.001 129 0% 121 24.8% 0 - benign(0.003) deleterious(0.02) neutral(0.383) NULL MKI67 4288 genome.wustl.edu 37 10 129913785 129913785 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002417.4 -1 reviewed p.S296Y 0.009 208 0% 177 27.1% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL EBF3 253738 genome.wustl.edu 37 10 131640380 131640380 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005463.1 -1 validated p.V449F 1.000 192 0% 269 12.6% 0 - benign(0.001) deleterious(0.04) neutral(0.349) NULL TCERG1L 256536 genome.wustl.edu 37 10 132902588 132902588 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174937.3 -1 validated p.E475D 0.999 299 0% 316 17.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_FF,HMMSmart_FF,superfamily_FF TCERG1L 256536 genome.wustl.edu 37 10 132961439 132961439 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174937.3 -1 validated p.S327N 0.000 127 0% 107 16.8% 0 - benign(0.086) tolerated(0.09) neutral(0.303) NULL JAKMIP3 282973 genome.wustl.edu 37 10 133930791 133930791 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105521.2 +1 provisional p.L116M 1.000 88 0% 96 26% 0 - probably_damaging(0.983) tolerated(0.2) deleterious(0.478) NULL JAKMIP3 282973 genome.wustl.edu 37 10 133955541 133955541 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105521.2 +1 provisional p.R531* 1.000 51 0% 46 19.6% 0 - - - - NULL DPYSL4 10570 genome.wustl.edu 37 10 134013895 134013895 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006426.2 +1 validated p.L283M 1.000 98 0% 104 20.2% 3 0% probably_damaging(0.965) deleterious(0) deleterious(0.851) HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases STK32C 282974 genome.wustl.edu 37 10 134022557 134022557 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173575.2 -1 reviewed p.V434M 1.000 311 0% 344 22.4% 10 20% benign(0.027) tolerated(0.11) neutral(0.273) NULL PWWP2B 170394 genome.wustl.edu 37 10 134219137 134219137 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138499.3 +1 validated p.A378V 0.020 8 0.000 9 0.444 19 31.5% benign(0) tolerated(0.29) neutral(0.029) NULL TUBGCP2 10844 genome.wustl.edu 37 10 135094914 135094914 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006659.2 -1 validated p.V812 0.000 62 0% 76 17.1% 163 36.1% - - - NULL TUBGCP2 10844 genome.wustl.edu 37 10 135099064 135099064 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006659.2 -1 validated p.E597D 1.000 47 0% 59 10.2% 129 9.3% benign(0.378) tolerated(0.07) neutral(0.440) HMMPfam_Spc97_Spc98 TUBGCP2 10844 genome.wustl.edu 37 10 135106072 135106072 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006659.2 -1 validated p.A382V 1.000 134 0.7% 221 16.7% 85 38.8% benign(0.218) deleterious(0.03) neutral(0.386) HMMPfam_Spc97_Spc98 TUBGCP2 10844 genome.wustl.edu 37 10 135106575 135106575 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006659.2 -1 validated p.A331D 1.000 63 0% 65 15.4% 78 17.9% benign(0.126) tolerated(0.05) neutral(0.356) HMMPfam_Spc97_Spc98 TUBGCP2 10844 genome.wustl.edu 37 10 135113079 135113079 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006659.2 -1 validated p.K103T 0.956 158 0% 144 18.1% 43 51.1% benign(0.005) tolerated(0.09) neutral(0.296) NULL CYP2E1 1571 genome.wustl.edu 37 10 135347316 135347316 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000773.3 +1 reviewed p.A294 0.000 267 0% 257 22.2% 2 50% - - - HMMPfam_p450,superfamily_Cytochrome_P450 LOC100288718 100288718 genome.wustl.edu 37 11 291121 291121 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343044.1 -1 model p.S13I 0.042 32 0% 46 26.1% 9 22.2% - - - NULL ATHL1 80162 genome.wustl.edu 37 11 293142 293142 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409479 +1 known p.H444R 0.000 123 0% 193 26.9% 12 41.6% possibly_damaging(0.623) tolerated(0.25) neutral(0.254) HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases B4GALNT4 338707 genome.wustl.edu 37 11 375669 375669 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178537.4 +1 validated p.A294V 0.996 34 0% 33 27.3% 14 7.1% unknown(0) tolerated(0.32) - NULL B4GALNT4 338707 genome.wustl.edu 37 11 379966 379966 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178537.4 +1 validated p.F863 0.968 40 0% 36 16.7% 12 25% - - - HMMPfam_CHGN,superfamily_SSF53448 B4GALNT4 338707 genome.wustl.edu 37 11 380394 380394 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178537.4 +1 validated p.A940T 1.000 42 0% 30 30% 22 63.6% possibly_damaging(0.868) tolerated(0.08) deleterious(0.637) HMMPfam_CHGN,superfamily_SSF53448 ANO9 338440 genome.wustl.edu 37 11 433389 433389 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012302.2 -1 validated p.T92I 0.005 79 0% 92 16.3% 15 6.6% possibly_damaging(0.707) tolerated(0.2) neutral(0.304) NULL LRRC56 115399 genome.wustl.edu 37 11 540862 540862 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198075.3 +1 validated e1+1 1.000 43 0% 40 40% 0 - - - - - C11orf35 256329 genome.wustl.edu 37 11 557915 557915 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173573.2 -1 validated p.R175H 0.477 18 0% 29 17.2% 11 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RASSF7 8045 genome.wustl.edu 37 11 563288 563288 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003475.3 +1 validated p.R308W 0.198 36 0% 14 28.6% 129 47.2% unknown(0) deleterious(0.03) - NULL CEND1 51286 genome.wustl.edu 37 11 788345 788345 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016564.3 -1 reviewed p.L78M 1.000 179 0% 230 19.1% 3 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL SLC25A22 79751 genome.wustl.edu 37 11 792882 792882 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024698.4 -1 provisional p.A134T 1.000 44 0% 56 26.8% 25 48% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) superfamily_Mitoch_carrier,HMMPfam_Mito_carr SLC25A22 79751 genome.wustl.edu 37 11 792924 792924 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024698.4 -1 provisional p.V120M 1.000 39 0% 65 20% 41 26.8% probably_damaging(0.964) deleterious(0.01) deleterious(0.812) superfamily_Mitoch_carrier,HMMPfam_Mito_carr PIDD 55367 genome.wustl.edu 37 11 803290 803290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145886.2 -1 reviewed p.R198H 0.017 176 0% 159 22.6% 7 28.5% possibly_damaging(0.829) tolerated(0.09) deleterious(0.611) HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like EFCAB4A 283229 genome.wustl.edu 37 11 828877 828877 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173584.3 +1 validated p.T64M 0.952 107 0% 130 20% 38 21% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_EF-hand EFCAB4A 283229 genome.wustl.edu 37 11 828921 828921 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173584.3 +1 validated p.H79N 0.515 67 0% 79 30.4% 34 29.4% benign(0.007) tolerated(0.71) neutral(0.002) superfamily_EF-hand EFCAB4A 283229 genome.wustl.edu 37 11 829053 829053 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450828 +1 known p.C123R 0.000 16 0% 17 23.5% 10 30% - - - NULL CHID1 66005 genome.wustl.edu 37 11 902198 902198 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142676.1 -1 validated p.G157W 1.000 178 1.1% 175 23.4% 62 4.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat MUC6 4588 genome.wustl.edu 37 11 1025364 1025364 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005961.2 -1 validated p.L935M 0.245 24 0% 27 33.3% 0 - unknown(0) tolerated(0.17) - HMMPfam_VWD,HMMSmart_SM00216 MUC6 4588 genome.wustl.edu 37 11 1029543 1029543 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005961.2 -1 validated p.G363V 0.806 46 0% 67 17.9% 0 - unknown(0) deleterious(0) - HMMSmart_SM00215 MUC5B 727897 genome.wustl.edu 37 11 1262270 1262270 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002458.1 +1 validated p.D1390A 0.000 23 0% 28 25% 0 - benign(0.014) - - NULL MUC5B 727897 genome.wustl.edu 37 11 1265053 1265053 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002458.1 +1 validated p.E2318K 0.000 297 0% 232 23.3% 2 0% benign(0.115) - - NULL MUC5B 727897 genome.wustl.edu 37 11 1268392 1268392 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002458.1 +1 validated p.A3431S 0.000 808 0% 613 26.3% 0 - unknown(0) - - NULL MUC5B 727897 genome.wustl.edu 37 11 1268476 1268476 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002458.1 +1 validated p.G3459R 0.000 621 0.2% 437 23.3% 2 0% unknown(0) - - NULL MUC5B 727897 genome.wustl.edu 37 11 1270234 1270234 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002458.1 +1 validated p.T4045P 0.040 630 0.2% 438 14.4% 1 0% unknown(0) - - NULL MUC5B 727897 genome.wustl.edu 37 11 1271343 1271343 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002458.1 +1 validated p.P4414 0.001 257 0.4% 199 20.6% 4 50% - - - NULL BRSK2 9024 genome.wustl.edu 37 11 1466873 1466873 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003957.2 +1 validated p.E350D 1.000 55 0% 42 26.2% 0 - benign(0.003) tolerated(0.72) neutral(0.002) superfamily_Kinase_like LOC338651 338651 genome.wustl.edu 37 11 1618799 1618799 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_021489.1 +1 validated NULL 0.005 42 0% 57 21.1% 0 - - - - - KRTAP5-2 440021 genome.wustl.edu 37 11 1619305 1619305 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004325.1 -1 validated p.P59L 0.002 113 0% 94 26.6% 3 66.6% unknown(0) tolerated(0.37) - PatternScan_MOLYBDOPTERIN_PROK_1 KRTAP5-3 387266 genome.wustl.edu 37 11 1629154 1629154 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012708.2 -1 validated p.S154 0.929 299 0.3% 245 11.4% 0 - - - - PatternScan_VWFC_1 ENSG00000244242 0 genome.wustl.edu 37 11 1756533 1756533 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340134 -1 known p.R222W 1.000 252 0% 135 25.2% 31 32.2% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) NULL LOC100287770 100287770 genome.wustl.edu 37 11 1778625 1778625 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343068.1 +1 model p.H260Y 0.584 143 0% 160 26.9% 1085 29.4% - - - NULL LSP1 4046 genome.wustl.edu 37 11 1901341 1901341 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002339.2 +1 reviewed p.E26D 0.486 67 0% 58 25.9% 103 0% possibly_damaging(0.892) deleterious(0) deleterious(0.796) NULL TH 7054 genome.wustl.edu 37 11 2186479 2186479 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199292.2 -1 reviewed p.D470 0.109 101 0% 100 21% 1 0% - - - HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains TH 7054 genome.wustl.edu 37 11 2188139 2188139 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199292.2 -1 reviewed p.E304D 1.000 13 0% 16 37.5% 0 - possibly_damaging(0.739) deleterious(0.04) deleterious(0.619) HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains C11orf21 29125 genome.wustl.edu 37 11 2323109 2323109 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024621.1 -1 inferred NULL 0.002 109 0% 105 16.2% 1 0% - - - - TRPM5 29850 genome.wustl.edu 37 11 2427271 2427271 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014555.3 -1 validated p.R1101H 0.003 91 0% 128 20.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TRPM5 29850 genome.wustl.edu 37 11 2439409 2439409 + Silent SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014555.3 -1 validated p.R298 0.672 58 0% 89 27% 0 - - - - NULL KCNQ1 3784 genome.wustl.edu 37 11 2592581 2592581 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000218.2 +1 reviewed p.V211M 1.000 92 0% 156 17.3% 1 0% possibly_damaging(0.631) deleterious(0.02) deleterious(0.604) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SLC22A18 5002 genome.wustl.edu 37 11 2929502 2929502 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183233.2 +1 reviewed p.G62S 0.964 182 0.5% 285 23.5% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter NAP1L4 4676 genome.wustl.edu 37 11 2976986 2976986 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005969.3 -1 reviewed p.D301 1.000 310 0% 177 19.2% 136 36.7% - - - HMMPfam_NAP CARS 833 genome.wustl.edu 37 11 3039932 3039932 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014437.1 -1 reviewed p.G481 0.845 603 0% 408 20.8% 65 47.6% - - - HMMPfam_tRNA-synt_1e,superfamily_SSF52374 CARS 833 genome.wustl.edu 37 11 3050289 3050289 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014437.1 -1 reviewed p.R323Q 1.000 184 0.5% 111 22.5% 44 43.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_tRNA-synt_1e,superfamily_SSF52374 OSBPL5 114879 genome.wustl.edu 37 11 3114775 3114775 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020896.3 -1 reviewed p.T643M 0.042 25 0% 28 28.6% 19 31.5% benign(0.034) tolerated(0.05) neutral(0.347) HMMPfam_Oxysterol_BP ART5 116969 genome.wustl.edu 37 11 3661391 3661391 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079536.1 -1 reviewed p.A90T 0.917 46 0% 49 10.2% 0 - benign(0.012) tolerated(0.14) neutral(0.250) HMMPfam_ART,superfamily_ADP-ribosylation CHRNA10 57053 genome.wustl.edu 37 11 3687525 3687525 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020402.2 -1 provisional p.L389M 1.000 36 0% 65 12.3% 2 0% possibly_damaging(0.553) tolerated(0.13) neutral(0.441) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM CHRNA10 57053 genome.wustl.edu 37 11 3690550 3690550 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020402.2 -1 provisional p.L80M 1.000 153 0% 173 23.7% 0 - possibly_damaging(0.945) deleterious(0.03) deleterious(0.754) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD NUP98 4928 genome.wustl.edu 37 11 3697755 3697755 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429801 -1 known p.S676P 1.000 157 0% 110 20.9% 84 30.9% - - - NULL PGAP2 27315 genome.wustl.edu 37 11 3845199 3845199 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145439.1 +1 validated p.L38F 1.000 92 0% 80 25% 50 34% unknown(0) - - NULL PGAP2 27315 genome.wustl.edu 37 11 3846314 3846314 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014489.2 +1 validated p.A258V 0.998 475 0% 400 20.5% 56 48.2% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_Frag1 OR52B4 143496 genome.wustl.edu 37 11 4388683 4388683 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005161.3 -1 validated p.V281 0.058 279 0% 48 27.1% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 TRIM21 6737 genome.wustl.edu 37 11 4411369 4411369 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003141.3 -1 reviewed p.R91W 0.000 213 0.5% 132 25% 43 44.1% benign(0.001) tolerated(0.19) neutral(0.050) HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850 OR52K1 390036 genome.wustl.edu 37 11 4510588 4510588 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005171.2 +1 validated p.R153Q 0.013 270 0% 109 25.7% 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR52M1 119772 genome.wustl.edu 37 11 4566814 4566814 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004137.1 +1 validated p.L132 0.010 328 0% 127 15% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR52M1 119772 genome.wustl.edu 37 11 4567357 4567357 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004137.1 +1 validated p.E313* 0.001 385 0.3% 102 25.5% 0 - - - - NULL TRIM68 55128 genome.wustl.edu 37 11 4626532 4626532 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018073.5 -1 reviewed p.N68S 0.003 206 0% 193 18.7% 0 - benign(0.111) tolerated(0.07) neutral(0.328) superfamily_SSF57850 OR51S1 119692 genome.wustl.edu 37 11 4869545 4869545 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004758.1 -1 provisional p.L298 0.992 372 0% 109 16.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR51S1 119692 genome.wustl.edu 37 11 4870223 4870223 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004758.1 -1 provisional p.F72 0.960 156 0% 49 22.4% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR51A7 119687 genome.wustl.edu 37 11 4929000 4929000 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004749.1 +1 provisional p.S134Y 0.268 194 0% 78 21.8% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_7tm_1,superfamily_SSF81321 OR51G2 81282 genome.wustl.edu 37 11 4936522 4936522 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005238.1 -1 provisional p.A124 0.999 275 0% 62 25.8% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 OR51G1 79324 genome.wustl.edu 37 11 4945452 4945452 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005237.1 -1 provisional p.V40I 0.004 177 0% 44 20.5% 0 - possibly_damaging(0.746) tolerated(0.2) neutral(0.323) superfamily_SSF81321 OR51L1 119682 genome.wustl.edu 37 11 5020814 5020814 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004755.1 +1 provisional p.G201E 1.000 592 0% 223 22% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OR51L1 119682 genome.wustl.edu 37 11 5020917 5020917 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004755.1 +1 provisional p.E235 0.525 620 0% 252 20.6% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR52J3 119679 genome.wustl.edu 37 11 5068135 5068135 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001916.2 +1 validated p.A127V 1.000 335 0% 73 19.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like HBB 3043 genome.wustl.edu 37 11 5247833 5247833 + Silent SNP G G A rs34665886 byCluster TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000518.4 -1 reviewed p.L97 1.000 215 0% 67 22.4% 4 0% - - - HMMPfam_Globin,superfamily_Globin-like OR51B4 79339 genome.wustl.edu 37 11 5322772 5322772 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033179.2 -1 validated p.N135K 0.049 308 0% 252 11.9% 0 - benign(0.011) tolerated(0.06) neutral(0.323) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR51B5 282763 genome.wustl.edu 37 11 5364019 5364019 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005567.1 -1 provisional p.V246I 0.752 235 0% 80 26.3% 0 - benign(0.364) tolerated(0.13) neutral(0.368) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR51B6 390058 genome.wustl.edu 37 11 5373443 5373443 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004750.1 +1 provisional p.L236I 1.000 616 0% 238 21.8% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_7tm_1,superfamily_SSF81321 OR51M1 390059 genome.wustl.edu 37 11 5410631 5410631 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004756.2 +1 validated p.M1I 0.001 263 0% 70 37.1% 0 - benign(0.192) deleterious(0) neutral(0.463) superfamily_Family A G protein-coupled receptor-like OR51I2 390064 genome.wustl.edu 37 11 5475054 5475054 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004754.2 +1 validated p.S112 0.000 210 0% 161 11.2% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 OR51I2 390064 genome.wustl.edu 37 11 5475553 5475553 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004754.2 +1 validated p.V279M 0.000 233 0% 165 17.6% 0 - possibly_damaging(0.728) tolerated(0.16) neutral(0.325) HMMPfam_7tm_1,superfamily_SSF81321 UBQLN3 50613 genome.wustl.edu 37 11 5529853 5529853 + Silent SNP G G A rs184537471 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017481.2 -1 reviewed p.G312 0.000 186 0.5% 62 27.4% 0 - - - - NULL UBQLN3 50613 genome.wustl.edu 37 11 5530464 5530464 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017481.2 -1 reviewed p.T109A 0.001 137 0% 42 28.6% 0 - benign(0) tolerated(0.54) neutral(0.007) NULL UBQLN3 50613 genome.wustl.edu 37 11 5530475 5530475 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017481.2 -1 reviewed p.A105V 0.022 146 0% 48 25% 0 - benign(0.016) tolerated(0.08) neutral(0.300) NULL UBQLNL 143630 genome.wustl.edu 37 11 5536566 5536566 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145053.4 -1 validated p.S369I 0.000 782 0% 220 26.8% 1 0% probably_damaging(0.998) tolerated(0.35) deleterious(0.495) NULL OR52H1 390067 genome.wustl.edu 37 11 5565933 5565933 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005289.1 -1 provisional p.H274R 0.946 627 0% 229 17% 0 - benign(0.004) tolerated(0.37) neutral(0.019) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR52H1 390067 genome.wustl.edu 37 11 5566168 5566168 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005289.1 -1 provisional p.A196T 0.031 180 0% 62 19.4% 0 - possibly_damaging(0.53) deleterious(0.03) deleterious(0.543) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TRIM6-TRIM34 445372 genome.wustl.edu 37 11 5625799 5625799 + Silent SNP C C T rs192827622 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003819.2 +1 reviewed p.N181 0.985 342 0% 207 20.3% 1 0% - - - NULL TRIM22 10346 genome.wustl.edu 37 11 5729464 5729464 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006074.3 +1 reviewed p.R279* 0.002 497 0% 253 23.3% 49 6.1% - - - NULL TRIM22 10346 genome.wustl.edu 37 11 5730402 5730402 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006074.3 +1 reviewed p.A341T 0.000 384 0% 172 18% 49 2% benign(0.002) tolerated(0.6) neutral(0.004) NULL TRIM22 10346 genome.wustl.edu 37 11 5730750 5730750 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006074.3 +1 reviewed p.F457V 0.995 123 0% 78 16.7% 43 9.3% benign(0.028) deleterious(0) neutral(0.446) HMMPfam_SPRY,HMMSmart_SM00449 OR52N4 390072 genome.wustl.edu 37 11 5776823 5776823 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005175.2 +1 validated p.L285F 0.019 349 0% 77 15.6% 0 - possibly_damaging(0.769) deleterious(0.02) deleterious(0.668) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR56A3 390083 genome.wustl.edu 37 11 5969480 5969480 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003443.2 +1 provisional p.E302* 1.000 232 0% 151 25.2% 0 - - - - superfamily_SSF81321 OR52L1 338751 genome.wustl.edu 37 11 6007801 6007801 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005173.2 -1 validated p.F120L 0.991 175 0% 64 28.1% 0 - possibly_damaging(0.799) deleterious(0.01) deleterious(0.707) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like C11orf42 160298 genome.wustl.edu 37 11 6231398 6231398 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173525.2 +1 validated p.R131C 1.000 95 0% 72 25% 1 0% probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL FAM160A2 84067 genome.wustl.edu 37 11 6238996 6238996 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032127.3 -1 validated p.G621V 0.995 40 0% 45 20% 5 40% benign(0.037) tolerated(0.07) neutral(0.321) NULL CNGA4 1262 genome.wustl.edu 37 11 6261575 6261575 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037329.2 +1 validated p.S184N 1.000 26 0% 27 14.8% 0 - possibly_damaging(0.679) deleterious(0) deleterious(0.686) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CNGA4 1262 genome.wustl.edu 37 11 6261604 6261604 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037329.2 +1 validated p.L194M 1.000 30 0% 28 28.6% 0 - probably_damaging(0.991) tolerated(0.16) deleterious(0.504) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CNGA4 1262 genome.wustl.edu 37 11 6261780 6261780 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037329.2 +1 validated p.L252 1.000 64 0% 78 25.6% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CNGA4 1262 genome.wustl.edu 37 11 6263023 6263023 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000254589 +1 known p.S196I 0.002 238 0% 266 21.4% 0 - possibly_damaging(0.539) deleterious(0) deleterious(0.627) HMMSmart_cNMP SMPD1 6609 genome.wustl.edu 37 11 6415705 6415705 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000543.3 +1 reviewed p.T588 0.000 73 0% 76 14.5% 44 9% - - - NULL APBB1 322 genome.wustl.edu 37 11 6422283 6422283 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001164.2 -1 reviewed p.K536N 1.000 326 0% 321 19.3% 16 6.2% probably_damaging(1) deleterious(0.03) deleterious(0.865) superfamily_PH domain-like APBB1 322 genome.wustl.edu 37 11 6422613 6422613 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001164.2 -1 reviewed p.S517Y 0.999 162 0% 154 14.9% 17 0% possibly_damaging(0.446) deleterious(0.03) deleterious(0.510) superfamily_PH domain-like APBB1 322 genome.wustl.edu 37 11 6424557 6424557 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001164.2 -1 reviewed p.Q344H 1.000 163 0% 137 26.3% 10 50% probably_damaging(0.961) tolerated(0.18) neutral(0.460) superfamily_PH domain-like FXC1 26515 genome.wustl.edu 37 11 6503043 6503043 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012192.3 +1 validated p.C32 1.000 139 0% 150 12% 35 31.4% - - - HMMPfam_zf-Tim10_DDP DNHD1 144132 genome.wustl.edu 37 11 6550137 6550137 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144666.2 +1 provisional p.C711 0.908 170 0% 61 23% 0 - - - - NULL DNHD1 144132 genome.wustl.edu 37 11 6584682 6584682 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144666.2 +1 provisional p.R3247Q 0.992 265 0% 227 18.1% 1 0% probably_damaging(0.999) tolerated(0.61) deleterious(0.494) NULL DNHD1 144132 genome.wustl.edu 37 11 6585654 6585654 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144666.2 +1 provisional p.R3459H 0.956 255 0% 321 20.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL DNHD1 144132 genome.wustl.edu 37 11 6588771 6588771 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144666.2 +1 provisional p.S4011I 0.000 49 0% 73 19.2% 3 0% possibly_damaging(0.867) tolerated(0.18) neutral(0.393) HMMPfam_Dynein_heavy RRP8 23378 genome.wustl.edu 37 11 6622595 6622595 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015324.2 -1 provisional p.R234Q 0.878 48 0% 50 22% 16 25% probably_damaging(0.999) tolerated(0.15) deleterious(0.732) NULL ILK 3611 genome.wustl.edu 37 11 6629279 6629279 + Silent SNP C C T rs56057203 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014794.1 +1 reviewed p.D31 0.864 197 0% 305 25.9% 90 24.4% - - - superfamily_ANK DCHS1 8642 genome.wustl.edu 37 11 6647297 6647297 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003737.2 -1 reviewed p.A2195 1.000 124 0% 177 24.9% 3 0% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DCHS1 8642 genome.wustl.edu 37 11 6648080 6648080 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003737.2 -1 reviewed p.R2064C 0.852 41 0% 73 12.3% 2 0% probably_damaging(0.96) tolerated(0.05) deleterious(0.748) HMMSmart_CA DCHS1 8642 genome.wustl.edu 37 11 6653554 6653554 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003737.2 -1 reviewed p.E1063D 1.000 117 0% 140 23.6% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DCHS1 8642 genome.wustl.edu 37 11 6653630 6653630 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003737.2 -1 reviewed p.A1038V 1.000 85 0% 134 20.9% 0 - probably_damaging(0.972) tolerated(0.24) neutral(0.451) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DCHS1 8642 genome.wustl.edu 37 11 6661646 6661646 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003737.2 -1 reviewed p.H400R 0.999 65 0% 73 26% 1 0% possibly_damaging(0.767) tolerated(0.71) neutral(0.286) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DCHS1 8642 genome.wustl.edu 37 11 6662383 6662383 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003737.2 -1 reviewed p.E154 1.000 31 0% 29 31% 1 0% - - - superfamily_Cadherin OR6A2 8590 genome.wustl.edu 37 11 6816724 6816724 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003696.2 -1 provisional p.I72 0.101 434 0% 116 26.7% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR2D2 120776 genome.wustl.edu 37 11 6913341 6913341 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003700.1 -1 provisional p.R131C 0.996 126 0% 43 30.2% 0 - possibly_damaging(0.93) deleterious(0) deleterious(0.821) HMMPfam_7tm_1,superfamily_SSF81321 ZNF214 7761 genome.wustl.edu 37 11 7021930 7021930 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013249.2 -1 validated p.E328D 1.000 299 0% 181 22.1% 1 0% possibly_damaging(0.611) tolerated(0.28) neutral(0.243) superfamily_C2H2 and C2HC zinc fingers ZNF214 7761 genome.wustl.edu 37 11 7022178 7022178 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013249.2 -1 validated p.L246I 0.858 136 0% 81 17.3% 4 0% benign(0.013) tolerated(0.49) neutral(0.011) superfamily_C2H2 and C2HC zinc fingers OLFML1 283298 genome.wustl.edu 37 11 7530915 7530915 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198474.3 +1 validated p.E235D 1.000 117 0% 124 17.7% 2 0% probably_damaging(0.979) tolerated(0.05) deleterious(0.767) HMMPfam_OLF,HMMSmart_SM00284 PPFIBP2 8495 genome.wustl.edu 37 11 7661042 7661042 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003621.2 +1 validated p.A439V 0.285 63 0% 57 15.8% 14 50% benign(0.001) tolerated(0.61) neutral(0.004) NULL OVCH2 341277 genome.wustl.edu 37 11 7727861 7727861 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198185.2 -1 validated p.L27 0.027 363 0% 92 18.5% 0 - - - - NULL OR5P2 120065 genome.wustl.edu 37 11 7818166 7818166 + Silent SNP G G A rs190297076 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153444.1 -1 provisional p.C108 1.000 150 0% 33 12.1% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 LMO1 4004 genome.wustl.edu 37 11 8251933 8251933 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002315.1 -1 reviewed p.C48 0.992 85 0% 68 14.7% 0 - - - - HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716 STK33 65975 genome.wustl.edu 37 11 8496313 8496313 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030906.2 -1 validated p.S47I 0.633 321 0% 175 25.7% 2 50% probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL ST5 6764 genome.wustl.edu 37 11 8728769 8728769 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005418.3 -1 reviewed p.L812 1.000 79 0% 84 17.9% 30 33.3% - - - HMMPfam_DENN,HMMSmart_SM00799 ASCL3 56676 genome.wustl.edu 37 11 8959454 8959454 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020646.1 -1 provisional p.G85 0.013 191 0% 74 12.2% 0 - - - - NULL SCUBE2 57758 genome.wustl.edu 37 11 9042647 9042647 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020974.2 -1 validated p.S982L 1.000 276 0% 123 19.5% 11 45.4% possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL IPO7 10527 genome.wustl.edu 37 11 9462065 9462065 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006391.2 +1 reviewed p.A920D 1.000 689 0.1% 243 10.7% 81 19.7% possibly_damaging(0.813) deleterious(0.04) deleterious(0.656) superfamily_ARM-type_fold SWAP70 23075 genome.wustl.edu 37 11 9715818 9715818 + Silent SNP G G A rs113738506 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015055.2 +1 validated p.R75 1.000 193 0% 72 20.8% 4 25% - - - superfamily_SSF47473 SBF2 81846 genome.wustl.edu 37 11 10050040 10050040 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030962.3 -1 reviewed p.P193H 1.000 127 0% 40 25% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DENN,HMMSmart_SM00799 SBF2 81846 genome.wustl.edu 37 11 10051421 10051421 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030962.3 -1 reviewed p.A135D 1.000 159 0% 46 19.6% 1 0% possibly_damaging(0.446) tolerated(0.09) neutral(0.443) HMMPfam_DENN,HMMSmart_SM00799 MRVI1 10335 genome.wustl.edu 37 11 10622544 10622544 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098579.1 -1 reviewed p.T637 0.764 291 0% 185 26.5% 4 0% - - - HMMPfam_MRVI1 MRVI1 10335 genome.wustl.edu 37 11 10649289 10649289 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098579.1 -1 reviewed p.V233I 0.628 133 0.8% 98 26.5% 1 0% benign(0) tolerated(0.53) neutral(0.007) NULL CTR9 9646 genome.wustl.edu 37 11 10781765 10781765 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014633.3 +1 provisional p.K213T 1.000 488 0% 268 11.2% 5 0% benign(0.245) tolerated(0.41) neutral(0.040) HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452 CTR9 9646 genome.wustl.edu 37 11 10785662 10785662 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014633.3 +1 provisional p.H400Y 1.000 429 0% 254 15.7% 7 0% benign(0.003) tolerated(0.06) neutral(0.323) superfamily_SSF48452 CTR9 9646 genome.wustl.edu 37 11 10788010 10788010 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014633.3 +1 provisional p.W553* 1.000 336 0% 169 17.2% 4 0% - - - HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452 CTR9 9646 genome.wustl.edu 37 11 10789934 10789934 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014633.3 +1 provisional p.V669I 1.000 320 0% 161 12.4% 19 47.3% benign(0.01) tolerated(0.89) neutral(0.001) superfamily_SSF48452 EIF4G2 1982 genome.wustl.edu 37 11 10825910 10825910 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429377 -1 known p.C209Y 1.000 203 0% 231 14.7% 159 29.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold ZBED5 58486 genome.wustl.edu 37 11 10874611 10874611 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143667.1 -1 reviewed p.A628T 0.998 216 0% 179 25.1% 56 39.2% benign(0.428) tolerated(0.5) neutral(0.149) NULL DKK3 27122 genome.wustl.edu 37 11 11986111 11986111 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018057.1 -1 reviewed p.R318H 1.000 109 0% 53 20.8% 12 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL MICAL2 9645 genome.wustl.edu 37 11 12183867 12183867 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014632.2 +1 provisional p.S55 0.955 199 0.5% 66 12.1% 0 - - - - NULL MICAL2 9645 genome.wustl.edu 37 11 12246310 12246310 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014632.2 +1 provisional p.S544F 1.000 90 0% 79 25.3% 2 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain MICAL2 9645 genome.wustl.edu 37 11 12278388 12278388 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014632.2 +1 provisional p.F1004L 1.000 180 0% 95 22.1% 5 20% benign(0.307) tolerated(0.23) neutral(0.137) HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) FAR1 84188 genome.wustl.edu 37 11 13749118 13749118 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032228.5 +1 validated p.V425I 1.000 297 0% 81 12.3% 18 44.4% possibly_damaging(0.696) deleterious(0.01) deleterious(0.655) HMMPfam_Sterile SPON1 10418 genome.wustl.edu 37 11 14096939 14096939 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000310358 +1 known p.S176Y 1.000 236 0% 127 22.8% 52 94.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Spond_N SPON1 10418 genome.wustl.edu 37 11 14101477 14101477 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000310358 +1 known p.P195 0.250 269 0% 124 20.2% 65 6.1% - - - HMMPfam_Spond_N INSC 387755 genome.wustl.edu 37 11 15197353 15197353 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031853.3 +1 provisional p.C88 0.943 117 0% 81 25.9% 0 - - - - NULL INSC 387755 genome.wustl.edu 37 11 15197489 15197489 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031853.3 +1 provisional p.E134K 0.999 48 0% 42 19% 0 - probably_damaging(0.998) tolerated(0.06) deleterious(0.797) superfamily_ARM repeat INSC 387755 genome.wustl.edu 37 11 15247257 15247257 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031853.3 +1 provisional p.N398 1.000 138 0% 102 25.5% 1 100% - - - superfamily_ARM repeat SOX6 55553 genome.wustl.edu 37 11 15994493 15994493 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033326.3 -1 reviewed p.K763N 1.000 371 0% 118 25.4% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SOX6 55553 genome.wustl.edu 37 11 16007761 16007761 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033326.3 -1 reviewed p.F704L 1.000 407 0.2% 154 18.2% 3 33.3% benign(0.307) tolerated(0.13) neutral(0.348) NULL SOX6 55553 genome.wustl.edu 37 11 16010768 16010768 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017508.2 -1 reviewed p.A557T 1.000 186 0% 93 18.3% 1 100% benign(0.026) tolerated(0.09) neutral(0.297) NULL SOX6 55553 genome.wustl.edu 37 11 16071288 16071288 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017508.2 -1 reviewed p.S445N 0.998 779 0% 185 13% 0 - unknown(0) deleterious(0.05) - NULL SOX6 55553 genome.wustl.edu 37 11 16077444 16077444 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033326.3 -1 reviewed p.L369I 1.000 322 0% 88 22.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL PLEKHA7 144100 genome.wustl.edu 37 11 16848050 16848050 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175058.4 -1 validated p.H320Q 0.013 116 0% 59 16.9% 13 46.1% benign(0.003) tolerated(0.32) neutral(0.024) NULL PIK3C2A 5286 genome.wustl.edu 37 11 17141435 17141435 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002645.2 -1 validated p.S915I 1.000 405 0% 303 27.7% 1 100% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat PIK3C2A 5286 genome.wustl.edu 37 11 17156477 17156477 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002645.2 -1 validated p.P666H 0.005 364 0% 331 23.9% 0 - benign(0.003) tolerated(0.12) neutral(0.261) NULL KCNJ11 3767 genome.wustl.edu 37 11 17408610 17408610 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000525.3 -1 reviewed p.L343 0.931 169 0% 140 22.1% 3 33.3% - - - HMMPfam_IRK,superfamily_Ig_E-set ABCC8 6833 genome.wustl.edu 37 11 17418746 17418746 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000352.3 -1 reviewed p.L1328I 1.000 92 0% 125 23.2% 0 - benign(0.122) tolerated(0.44) neutral(0.022) NULL ABCC8 6833 genome.wustl.edu 37 11 17483202 17483202 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000352.3 -1 reviewed p.I250 0.956 190 0% 132 27.3% 0 - - - - NULL ABCC8 6833 genome.wustl.edu 37 11 17496454 17496454 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000352.3 -1 reviewed p.A90V 0.998 368 0% 363 25.9% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL KCNC1 3746 genome.wustl.edu 37 11 17793600 17793600 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112741.1 +1 reviewed p.R320H 1.000 60 0% 44 20.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels MRGPRX4 117196 genome.wustl.edu 37 11 18195767 18195767 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_054032.3 +1 validated p.P322S 0.027 145 0% 131 14.5% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL ENSG00000189332 0 genome.wustl.edu 37 11 18231432 18231432 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340135 +1 known p.T73M 1.000 150 0% 136 24.3% 0 - probably_damaging(0.999) tolerated(0.15) deleterious(0.732) superfamily_Mitochondrial carrier HPS5 11234 genome.wustl.edu 37 11 18309205 18309205 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181507.1 -1 reviewed p.R865Q 1.000 292 0% 216 23.1% 31 29% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL GTF2H1 2965 genome.wustl.edu 37 11 18359704 18359704 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142307.1 +1 validated p.V132 1.000 567 0% 305 21% 13 76.9% - - - HMMPfam_BSD,HMMSmart_SM00751 LDHA 3939 genome.wustl.edu 37 11 18418496 18418496 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005566.3 +1 reviewed p.A36V 1.000 294 0% 266 23.3% 673 41.4% possibly_damaging(0.507) deleterious(0.04) deleterious(0.518) HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains LDHA 3939 genome.wustl.edu 37 11 18424561 18424561 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005566.3 +1 reviewed e4+1 1.000 169 0% 182 13.2% 0 - - - - - TSG101 7251 genome.wustl.edu 37 11 18503300 18503300 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006292.2 -1 reviewed p.P320 1.000 632 0% 318 18.9% 151 43.7% - - - HMMPfam_Vps23_core SPTY2D1 144108 genome.wustl.edu 37 11 18636512 18636512 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194285.2 -1 validated p.Q437* 0.505 48 0% 29 20.7% 1 0% - - - NULL SPTY2D1 144108 genome.wustl.edu 37 11 18655786 18655786 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194285.2 -1 validated p.L7F 1.000 178 0% 148 18.2% 2 0% possibly_damaging(0.897) deleterious(0) deleterious(0.798) NULL PTPN5 84867 genome.wustl.edu 37 11 18750529 18750529 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006906.1 -1 validated p.H550 0.998 243 0% 214 12.6% 0 - - - - HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II MRGPRX1 259249 genome.wustl.edu 37 11 18956158 18956158 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147199.3 -1 provisional p.R58S 0.028 230 0% 188 12.8% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_7tm_1,superfamily_SSF81321 ZDHHC13 54503 genome.wustl.edu 37 11 19173825 19173825 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019028.2 +1 validated p.K235N 1.000 560 0% 155 17.4% 4 25% possibly_damaging(0.811) deleterious(0.03) deleterious(0.670) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ZDHHC13 54503 genome.wustl.edu 37 11 19180593 19180593 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000319776 +1 known p.P372T 1.000 637 0.2% 206 16% 0 - - - - NULL E2F8 79733 genome.wustl.edu 37 11 19247159 19247159 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024680.2 -1 validated p.V677G 1.000 292 0% 202 20.3% 16 18.7% benign(0.038) deleterious(0.01) neutral(0.408) NULL E2F8 79733 genome.wustl.edu 37 11 19256043 19256043 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024680.2 -1 validated p.K264N 1.000 400 0% 392 21.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) "HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain" NAV2 89797 genome.wustl.edu 37 11 20113856 20113856 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182964.5 +1 validated p.P1922 0.000 52 0% 23 21.7% 1 100% - - - NULL NAV2 89797 genome.wustl.edu 37 11 20127174 20127174 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182964.5 +1 validated p.R2251C 0.998 199 0% 85 21.2% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DBX1 120237 genome.wustl.edu 37 11 20178227 20178227 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029865.1 -1 provisional p.R228* 0.000 22 0% 14 42.9% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like DBX1 120237 genome.wustl.edu 37 11 20180751 20180751 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029865.1 -1 provisional p.S152Y 1.000 437 0.2% 321 21.8% 0 - possibly_damaging(0.86) deleterious(0.01) deleterious(0.738) NULL PRMT3 10196 genome.wustl.edu 37 11 20529919 20529919 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005788.3 +1 validated p.L519P 0.996 202 0% 66 19.7% 30 30% probably_damaging(0.994) deleterious(0) deleterious(0.897) superfamily_S-adenosyl-L-methionine-dependent methyltransferases ANO5 203859 genome.wustl.edu 37 11 22249033 22249033 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213599.2 +1 reviewed p.H183Q 0.065 255 0% 50 20% 0 - benign(0) tolerated(0.22) neutral(0.042) NULL ANO5 203859 genome.wustl.edu 37 11 22281093 22281093 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213599.2 +1 reviewed p.A479D 1.000 582 0% 151 18.5% 0 - possibly_damaging(0.649) deleterious(0) deleterious(0.672) NULL SLC17A6 57084 genome.wustl.edu 37 11 22384325 22384325 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020346.2 +1 validated p.G234 1.000 812 0% 476 22.7% 0 - - - - HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter SVIP 258010 genome.wustl.edu 37 11 22848808 22848808 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148893.1 -1 provisional p.E55G 1.000 90 0% 194 19.6% 37 35.1% benign(0.133) deleterious(0) neutral(0.456) NULL LUZP2 338645 genome.wustl.edu 37 11 24518839 24518839 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009909.2 +1 validated p.V17A 1.000 22 0% 44 27.3% 0 - benign(0.053) deleterious(0) neutral(0.448) NULL LUZP2 338645 genome.wustl.edu 37 11 25004764 25004764 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009909.2 +1 validated p.T230 0.000 282 0% 68 22.1% 0 - - - - NULL ANO3 63982 genome.wustl.edu 37 11 26620414 26620414 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031418.2 +1 validated p.R514C 1.000 227 0% 95 27.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ANO3 63982 genome.wustl.edu 37 11 26677934 26677934 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031418.2 +1 validated p.Y890C 1.000 426 0% 209 12.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF590 SLC5A12 159963 genome.wustl.edu 37 11 26743102 26743102 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178498.3 -1 validated p.G54S 0.994 184 0% 101 16.8% 0 - benign(0) tolerated(0.43) neutral(0.013) HMMPfam_SSF BDNF 627 genome.wustl.edu 37 11 27679757 27679757 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143810.1 -1 reviewed p.A201T 1.000 224 0% 274 14.6% 1 0% possibly_damaging(0.507) deleterious(0) deleterious(0.614) NULL KIF18A 81930 genome.wustl.edu 37 11 28057835 28057835 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031217.3 -1 validated p.D775 0.115 426 0% 149 20.8% 29 58.6% - - - NULL KIF18A 81930 genome.wustl.edu 37 11 28090928 28090928 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031217.3 -1 validated p.R490C 0.981 339 0.3% 83 20.5% 9 44.4% probably_damaging(0.999) tolerated(0.15) deleterious(0.732) NULL KIF18A 81930 genome.wustl.edu 37 11 28119395 28119395 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031217.3 -1 validated p.V34I 1.000 221 0% 184 19.6% 6 50% possibly_damaging(0.653) tolerated(0.42) neutral(0.244) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 KCNA4 3739 genome.wustl.edu 37 11 30033434 30033434 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002233.2 -1 reviewed p.E264D 1.000 82 1.2% 110 24.5% 0 - benign(0.011) tolerated(0.23) neutral(0.042) HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain MPPED2 744 genome.wustl.edu 37 11 30516846 30516846 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001584.2 -1 reviewed p.P178L 1.000 315 0% 222 20.3% 10 30% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases DCDC1 341019 genome.wustl.edu 37 11 31349706 31349706 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181807.2 -1 validated p.T41N 0.001 303 0.3% 224 19.6% 0 - possibly_damaging(0.638) deleterious(0.02) deleterious(0.607) NULL PAX6 5080 genome.wustl.edu 37 11 31812352 31812352 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001604.4 -1 reviewed p.S377 0.950 288 0% 170 20.6% 16 93.7% - - - NULL PAX6 5080 genome.wustl.edu 37 11 31812409 31812409 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001604.4 -1 reviewed e10-1 1.000 185 0% 114 21.1% 0 - - - - - PAX6 5080 genome.wustl.edu 37 11 31823185 31823185 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001604.4 -1 reviewed p.C108Y 1.000 198 0% 252 25% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like PAX6 5080 genome.wustl.edu 37 11 31832564 31832564 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001604.4 -1 reviewed e1-1 1.000 7 0.000 45 0.178 3 33.3% - - - - QSER1 79832 genome.wustl.edu 37 11 32953336 32953336 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076786.1 +1 provisional p.P49S 1.000 400 0% 145 23.4% 4 75% possibly_damaging(0.863) tolerated(0.24) neutral(0.371) NULL QSER1 79832 genome.wustl.edu 37 11 32953772 32953772 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076786.1 +1 provisional p.R194Q 1.000 198 0.5% 88 10.2% 1 0% possibly_damaging(0.666) tolerated(0.06) deleterious(0.558) NULL QSER1 79832 genome.wustl.edu 37 11 32987973 32987973 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076786.1 +1 provisional p.E1570D 1.000 275 0% 194 13.9% 7 14.2% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL CSTF3 1479 genome.wustl.edu 37 11 33129474 33129474 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001326.2 -1 reviewed p.T111A 1.000 501 0% 208 25.5% 10 60% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) superfamily_TPR-like HIPK3 10114 genome.wustl.edu 37 11 33308518 33308518 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005734.3 +1 validated p.Q186H 0.996 113 0% 66 15.2% 1 0% benign(0.02) deleterious(0.01) neutral(0.407) superfamily_Protein kinase-like (PK-like) HIPK3 10114 genome.wustl.edu 37 11 33370735 33370735 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005734.3 +1 validated p.L903F 1.000 395 0% 126 23.8% 11 36.3% probably_damaging(0.99) tolerated(0.11) deleterious(0.713) NULL C11orf41 25758 genome.wustl.edu 37 11 33596361 33596361 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012194.1 +1 validated p.T1157 1.000 206 0.5% 56 26.8% 0 - - - - NULL FBXO3 26273 genome.wustl.edu 37 11 33776033 33776033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012175.3 -1 reviewed p.R231Q 1.000 424 0.2% 168 25% 14 42.8% benign(0.004) tolerated(0.34) neutral(0.023) HMMPfam_SMI1_KNR4 FBXO3 26273 genome.wustl.edu 37 11 33777361 33777361 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012175.3 -1 reviewed p.A212S 0.991 225 0% 110 22.7% 14 42.8% benign(0) tolerated(0.81) neutral(0.001) HMMPfam_SMI1_KNR4 FBXO3 26273 genome.wustl.edu 37 11 33777486 33777486 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012175.3 -1 reviewed p.R170H 1.000 176 0% 69 11.6% 15 13.3% benign(0.107) tolerated(0.2) neutral(0.058) HMMPfam_SMI1_KNR4 CAPRIN1 4076 genome.wustl.edu 37 11 34097897 34097897 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005898.4 +1 validated p.D161Y 1.000 231 0% 126 17.5% 65 47.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CAPRIN1 4076 genome.wustl.edu 37 11 34107631 34107631 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005898.4 +1 validated p.Q329H 1.000 133 0% 113 20.4% 61 21.3% benign(0.02) tolerated(0.29) neutral(0.030) NULL CAPRIN1 4076 genome.wustl.edu 37 11 34107766 34107766 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005898.4 +1 validated p.Q374H 1.000 87 0% 98 19.4% 58 17.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CAPRIN1 4076 genome.wustl.edu 37 11 34120902 34120902 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005898.4 +1 validated p.Q706H 1.000 181 0% 92 19.6% 139 30.2% unknown(0) deleterious(0) - NULL NAT10 55226 genome.wustl.edu 37 11 34167693 34167693 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024662.2 +1 validated p.R1011I 0.999 695 0% 332 22.3% 55 34.5% unknown(0) deleterious(0.05) - NULL ELF5 2001 genome.wustl.edu 37 11 34503985 34503985 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198381.1 -1 reviewed p.S166 0.185 459 0% 203 18.2% 0 - - - - NULL PDHX 8050 genome.wustl.edu 37 11 34979121 34979121 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003477.2 +1 reviewed p.G178E 0.008 99 0% 67 17.9% 26 57.6% possibly_damaging(0.449) tolerated(0.35) neutral(0.167) superfamily_E3_bd SLC1A2 6506 genome.wustl.edu 37 11 35339032 35339032 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004171.3 -1 reviewed p.R17* 0.994 150 0% 51 21.6% 0 - - - - NULL ENSG00000186082 0 genome.wustl.edu 37 11 35882096 35882096 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000333983 -1 known p.H319 0.758 16 0% 22 27.3% 0 - - - - HMMPfam_Filament ENSG00000186082 0 genome.wustl.edu 37 11 35882296 35882296 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000333983 -1 known p.L253I 0.956 66 0% 42 21.4% 0 - - - - HMMPfam_Filament PRR5L 79899 genome.wustl.edu 37 11 36422835 36422835 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024841.4 +1 validated p.S55I 1.000 34 0% 36 19.4% 2 50% possibly_damaging(0.468) deleterious(0.01) deleterious(0.559) HMMPfam_HbrB TRAF6 7189 genome.wustl.edu 37 11 36511764 36511764 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004620.2 -1 reviewed p.P398L 1.000 339 0% 157 21% 9 22.2% possibly_damaging(0.527) deleterious(0.01) deleterious(0.584) HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like TRAF6 7189 genome.wustl.edu 37 11 36511925 36511925 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004620.2 -1 reviewed p.I344 0.981 402 0% 157 17.2% 2 50% - - - NULL RAG1 5896 genome.wustl.edu 37 11 36596826 36596826 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000448.2 +1 reviewed p.L658V 0.003 156 0% 50 22% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL RAG2 5897 genome.wustl.edu 37 11 36614670 36614670 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000536.3 -1 reviewed p.C350Y 1.000 626 0% 440 19.3% 0 - benign(0.173) deleterious(0.01) neutral(0.422) HMMPfam_RAG2 LRRC4C 57689 genome.wustl.edu 37 11 40136151 40136151 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020929.1 -1 validated p.R564 1.000 596 0% 172 19.2% 0 - - - - NULL LRRC4C 57689 genome.wustl.edu 37 11 40136551 40136551 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020929.1 -1 validated p.S431F 1.000 197 0% 63 14.3% 0 - possibly_damaging(0.822) deleterious(0.05) deleterious(0.656) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin LRRC4C 57689 genome.wustl.edu 37 11 40137621 40137621 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020929.1 -1 validated p.I74 1.000 165 0% 77 20.8% 1 0% - - - HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like LRRC4C 57689 genome.wustl.edu 37 11 40137641 40137641 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020929.1 -1 validated p.R68C 0.623 180 0% 78 23.1% 1 0% possibly_damaging(0.938) deleterious(0.05) deleterious(0.729) HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like LOC399881 399881 genome.wustl.edu 37 11 43283761 43283761 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_040375.2 -1 model NULL 1.000 69 0% 27 22.2% 0 - - - - - LOC399881 399881 genome.wustl.edu 37 11 43284675 43284675 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_040375.2 -1 model NULL 1.000 89 0% 35 17.1% 0 - - - - - API5 8539 genome.wustl.edu 37 11 43364195 43364195 + RNA SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024625.1 +1 validated NULL 1.000 36 0% 17 23.5% 84 42.8% unknown(0) - - - TTC17 55761 genome.wustl.edu 37 11 43400797 43400797 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018259.5 +1 validated p.M58I 1.000 175 0% 42 23.8% 5 40% benign(0.06) tolerated(0.12) neutral(0.265) NULL TTC17 55761 genome.wustl.edu 37 11 43511819 43511819 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018259.5 +1 validated p.A1021T 1.000 97 0% 25 16% 27 51.8% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_TPR,superfamily_SSF48452 ACCSL 390110 genome.wustl.edu 37 11 44069845 44069845 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031854.2 +1 validated p.A87T 0.000 79 0% 24 16.7% 0 - benign(0) tolerated(0.06) neutral(0.323) NULL ACCSL 390110 genome.wustl.edu 37 11 44074213 44074213 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031854.2 +1 validated p.E258D 0.300 479 0% 199 21.6% 0 - benign(0.045) tolerated(1) neutral(0.003) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases ACCS 84680 genome.wustl.edu 37 11 44097138 44097138 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127219.1 +1 validated p.A184 0.001 321 0% 282 23% 6 0% - - - HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major EXT2 2132 genome.wustl.edu 37 11 44130830 44130830 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000401.3 +1 reviewed p.D221A 1.000 235 0% 149 14.1% 31 38.7% benign(0.02) tolerated(0.05) neutral(0.346) HMMPfam_Exostosin CD82 3732 genome.wustl.edu 37 11 44626654 44626654 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002231.3 +1 reviewed p.G61 0.056 173 0% 126 19% 29 24.1% - - - HMMPfam_Tetraspannin CD82 3732 genome.wustl.edu 37 11 44640598 44640598 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002231.3 +1 reviewed e8-1 1.000 108 0% 82 17.1% 10 80% - - - - TSPAN18 90139 genome.wustl.edu 37 11 44948230 44948230 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130783.4 +1 validated p.C207 0.995 155 0% 83 14.5% 2 0% - - - superfamily_Tetraspanin,HMMPfam_Tetraspannin TP53I11 9537 genome.wustl.edu 37 11 44959842 44959842 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076787.1 -1 validated p.Q15 1.000 79 0% 102 21.6% 21 47.6% - - - NULL SYT13 57586 genome.wustl.edu 37 11 45265684 45265684 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020826.2 -1 validated p.S400 0.001 77 0% 51 21.6% 13 69.2% - - - HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) CHST1 8534 genome.wustl.edu 37 11 45671251 45671251 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003654.4 -1 validated p.R408H 0.998 19 0% 29 20.7% 2 0% benign(0) tolerated(0.56) neutral(0.006) NULL CHST1 8534 genome.wustl.edu 37 11 45672417 45672417 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003654.4 -1 validated p.Q19H 1.000 43 0% 33 30.3% 3 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SLC35C1 55343 genome.wustl.edu 37 11 45832511 45832511 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018389.4 +1 reviewed p.I240 0.999 49 2% 56 16.1% 35 45.7% - - - HMMPfam_TPT CRY2 1408 genome.wustl.edu 37 11 45891195 45891195 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021117.3 +1 validated p.R362S 1.000 109 0% 65 32.3% 7 42.8% benign(0) tolerated(0.25) neutral(0.037) HMMPfam_FAD_binding_7,superfamily_Photolyase_FAD-bd/Cryptochr_C PEX16 9409 genome.wustl.edu 37 11 45932474 45932474 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057174.2 -1 reviewed p.H309 0.946 67 0% 74 18.9% 61 47.5% - - - HMMPfam_Pex16 PEX16 9409 genome.wustl.edu 37 11 45937083 45937083 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057174.2 -1 reviewed p.K132N 1.000 151 0% 145 22.1% 139 37.4% probably_damaging(0.977) tolerated(0.06) deleterious(0.742) HMMPfam_Pex16 GYLTL1B 120071 genome.wustl.edu 37 11 45946196 45946196 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152312.3 +1 validated p.S211L 1.000 203 0% 265 19.6% 13 84.6% benign(0.004) tolerated(0.58) neutral(0.005) HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases PHF21A 51317 genome.wustl.edu 37 11 45991391 45991391 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101802.1 -1 validated p.T225I 1.000 576 0% 220 26.4% 10 40% probably_damaging(0.965) deleterious(0) deleterious(0.851) NULL PHF21A 51317 genome.wustl.edu 37 11 46098328 46098328 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101802.1 -1 validated p.I44L 1.000 512 0.2% 346 18.2% 4 25% probably_damaging(0.957) deleterious(0) deleterious(0.845) NULL CREB3L1 90993 genome.wustl.edu 37 11 46332668 46332668 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052854.2 +1 validated p.P227 0.997 49 0% 52 23.1% 6 0% - - - NULL DGKZ 8525 genome.wustl.edu 37 11 46391092 46391092 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105540.1 +1 reviewed p.V353I 0.032 139 0% 198 22.7% 33 42.4% benign(0.003) tolerated(0.56) neutral(0.006) NULL DGKZ 8525 genome.wustl.edu 37 11 46400051 46400051 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105540.1 +1 reviewed e27+1 1.000 148 0% 136 22.8% 7 28.5% - - - - CHRM4 1132 genome.wustl.edu 37 11 46406856 46406856 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000741.2 -1 reviewed p.V418I 0.996 333 0% 258 11.2% 0 - probably_damaging(0.999) tolerated(1) deleterious(0.490) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CHRM4 1132 genome.wustl.edu 37 11 46407157 46407157 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000741.2 -1 reviewed p.E317D 1.000 133 0% 113 10.6% 0 - benign(0.083) tolerated(0.58) neutral(0.011) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CHRM4 1132 genome.wustl.edu 37 11 46407510 46407510 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000741.2 -1 reviewed p.A200T 0.992 76 0% 82 26.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like AMBRA1 55626 genome.wustl.edu 37 11 46419115 46419115 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017749.2 -1 validated p.P1171L 0.352 315 0% 275 21.8% 30 33.3% benign(0.141) tolerated(1) neutral(0.012) NULL F2 2147 genome.wustl.edu 37 11 46749628 46749628 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000506.3 +1 reviewed p.A405T 1.000 57 0% 47 10.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS CKAP5 9793 genome.wustl.edu 37 11 46782292 46782292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008938.1 -1 validated p.R1422W 1.000 495 0.2% 125 12.8% 41 12.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LRP4 4038 genome.wustl.edu 37 11 46918427 46918427 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002334.3 -1 reviewed p.E305 1.000 275 0% 297 23.2% 1 100% - - - HMMSmart_SM00192,HMMSmart_SM00181 C11orf49 79096 genome.wustl.edu 37 11 47073953 47073953 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003677.1 +1 validated p.C55Y 1.000 295 0% 158 13.9% 50 42% benign(0.048) tolerated(0.42) neutral(0.017) NULL ARFGAP2 84364 genome.wustl.edu 37 11 47189750 47189750 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032389.3 -1 provisional p.P332S 1.000 387 0% 261 20.7% 70 35.7% unknown(0) deleterious(0.01) - NULL DDB2 1643 genome.wustl.edu 37 11 47256408 47256408 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000107.2 +1 reviewed p.K268T 1.000 123 0% 76 19.7% 35 45.7% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 MADD 8567 genome.wustl.edu 37 11 47305747 47305747 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003682.3 +1 reviewed p.D627 0.287 451 0% 314 23.6% 4 0% - - - NULL MADD 8567 genome.wustl.edu 37 11 47330219 47330219 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003682.3 +1 reviewed p.S1279 1.000 130 0% 82 23.2% 19 26.3% - - - NULL MADD 8567 genome.wustl.edu 37 11 47350243 47350243 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003682.3 +1 reviewed p.Y1609 1.000 188 0% 139 21.6% 49 24.4% - - - NULL MYBPC3 4607 genome.wustl.edu 37 11 47359094 47359094 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000256.3 -1 reviewed p.R817Q 1.000 141 0% 141 19.9% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like PSMC3 5702 genome.wustl.edu 37 11 47444254 47444254 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002804.4 -1 reviewed p.A252V 1.000 82 0% 69 27.5% 310 42.2% probably_damaging(0.999) tolerated(0.25) deleterious(0.527) HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases RAPSN 5913 genome.wustl.edu 37 11 47462750 47462750 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005055.3 -1 reviewed p.I309N 0.977 79 0% 96 21.9% 0 - benign(0.004) tolerated(0.06) neutral(0.323) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like KBTBD4 55709 genome.wustl.edu 37 11 47594601 47594601 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018095.4 -1 validated p.R496W 1.000 128 0% 103 25.2% 33 42.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL KBTBD4 55709 genome.wustl.edu 37 11 47594892 47594892 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018095.4 -1 validated p.L399 0.995 203 0% 185 22.7% 29 41.3% - - - HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain KBTBD4 55709 genome.wustl.edu 37 11 47594984 47594984 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018095.4 -1 validated p.R368H 1.000 218 0% 177 26.6% 26 38.4% benign(0.312) tolerated(0.16) neutral(0.157) superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2 MTCH2 23788 genome.wustl.edu 37 11 47653241 47653241 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014342.3 -1 validated p.R131H 1.000 261 0% 112 14.3% 184 46.7% probably_damaging(0.999) tolerated(0.11) deleterious(0.762) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr MTCH2 23788 genome.wustl.edu 37 11 47657124 47657124 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014342.3 -1 validated e4-1 1.000 524 0% 336 19.3% 0 - - - - - FNBP4 23360 genome.wustl.edu 37 11 47744718 47744718 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015308.2 -1 validated p.M872T 0.942 253 0% 149 21.5% 20 50% benign(0.013) deleterious(0.02) neutral(0.384) NULL NUP160 23279 genome.wustl.edu 37 11 47810091 47810091 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015231.1 -1 validated p.T1195I 0.994 225 0% 144 29.2% 31 45.1% possibly_damaging(0.816) tolerated(0.06) deleterious(0.631) NULL OR4X2 119764 genome.wustl.edu 37 11 48267394 48267394 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004727.1 +1 provisional p.V247I 0.013 190 0% 62 24.2% 0 - benign(0) tolerated(1) - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like FOLH1 2346 genome.wustl.edu 37 11 49186262 49186262 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004476.1 -1 reviewed p.K479E 1.000 324 0% 225 21.8% 13 46.1% possibly_damaging(0.872) deleterious(0.01) deleterious(0.745) superfamily_Zn-dependent exopeptidases FOLH1 2346 genome.wustl.edu 37 11 49221902 49221902 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004476.1 -1 reviewed p.D106N 1.000 427 0.2% 477 21.8% 6 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL OR4C13 283092 genome.wustl.edu 37 11 49974756 49974756 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001955.2 +1 validated p.A261D 0.000 448 0% 127 21.3% 0 - possibly_damaging(0.768) deleterious(0.04) deleterious(0.634) HMMPfam_7tm_1,superfamily_SSF81321 OR4C12 283093 genome.wustl.edu 37 11 50003768 50003768 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005270.2 -1 validated p.I90 0.849 192 0% 82 15.9% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR4A5 81318 genome.wustl.edu 37 11 51411567 51411567 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005272.3 -1 validated p.H277Y 0.947 161 0% 55 18.2% 0 - benign(0.119) deleterious(0) neutral(0.454) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TRIM48 79097 genome.wustl.edu 37 11 55032719 55032719 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024114.3 +1 validated p.L130M 0.996 252 0.4% 76 21.1% 0 - probably_damaging(0.969) tolerated(0.09) deleterious(0.708) HMMPfam_zf-B_box,HMMSmart_SM00336 ENSG00000166007 0 genome.wustl.edu 37 11 55065654 55065654 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000309470 -1 known p.G31V 0.995 92 0% 21 19% 0 - - - - HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 OR4A15 81328 genome.wustl.edu 37 11 55136019 55136019 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005275.1 +1 provisional p.T220 0.007 592 0.2% 173 20.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 ENSG00000181950 0 genome.wustl.edu 37 11 55234888 55234888 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000314689 +1 known p.I119 0.136 66 0% 49 30.6% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR4C16 219428 genome.wustl.edu 37 11 55339654 55339654 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004701.2 +1 validated p.Q17 0.032 305 0% 134 23.1% 0 - - - - superfamily_SSF81321 OR4P4 81300 genome.wustl.edu 37 11 55406128 55406128 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004124.1 +1 provisional p.L99I 0.004 349 0% 76 15.8% 0 - probably_damaging(0.972) tolerated(0.22) neutral(0.456) HMMPfam_7tm_1,superfamily_SSF81321 OR4P4 81300 genome.wustl.edu 37 11 55406404 55406404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004124.1 +1 provisional p.H191Y 0.000 342 0.6% 121 26.4% 0 - benign(0) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 OR5L1 219437 genome.wustl.edu 37 11 55578960 55578960 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004738.1 +1 provisional p.C6 0.021 404 0% 254 24.8% 0 - - - - superfamily_SSF81321 OR5L1 219437 genome.wustl.edu 37 11 55579534 55579534 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004738.1 +1 provisional p.L198 0.000 393 0% 264 22.3% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR5D16 390144 genome.wustl.edu 37 11 55606428 55606428 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005496.1 +1 provisional p.H67 0.734 472 0.2% 141 17.7% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR10AG1 282770 genome.wustl.edu 37 11 55735063 55735063 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005491.1 -1 provisional p.R293G 0.921 169 0% 73 26% 0 - probably_damaging(0.962) deleterious(0.04) deleterious(0.754) superfamily_Family A G protein-coupled receptor-like OR7E5P 219445 genome.wustl.edu 37 11 55746836 55746836 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399170 -1 known p.T207 0.922 162 0.6% 97 16.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR7E5P 219445 genome.wustl.edu 37 11 55746910 55746910 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399170 -1 known p.L183 0.030 296 0% 220 22.7% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR5F1 338674 genome.wustl.edu 37 11 55761862 55761862 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003697.1 -1 provisional p.K80 0.004 140 0% 44 22.7% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR8I2 120586 genome.wustl.edu 37 11 55860932 55860932 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003750.1 +1 provisional p.R50I 0.000 742 0.1% 214 22% 0 - possibly_damaging(0.509) tolerated(0.45) neutral(0.183) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR8H2 390151 genome.wustl.edu 37 11 55872720 55872720 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005200.1 +1 provisional p.S68P 0.662 766 0% 286 23.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_SSF81321 OR8H3 390152 genome.wustl.edu 37 11 55890175 55890175 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005201.1 +1 provisional p.T109 0.000 596 0% 243 12.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR8H3 390152 genome.wustl.edu 37 11 55890226 55890226 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005201.1 +1 provisional p.I126 1.000 519 0.2% 219 18.7% 0 - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 OR8J3 81168 genome.wustl.edu 37 11 55905162 55905162 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004064.1 -1 provisional p.E11D 0.342 250 0% 360 10.6% 0 - possibly_damaging(0.93) tolerated(0.08) deleterious(0.676) superfamily_SSF81321 OR5T3 390154 genome.wustl.edu 37 11 56020246 56020246 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004747.1 +1 provisional p.V191M 0.000 575 0% 291 22% 0 - possibly_damaging(0.908) tolerated(0.22) neutral(0.403) HMMPfam_7tm_1,superfamily_SSF81321 OR5T3 390154 genome.wustl.edu 37 11 56020357 56020357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004747.1 +1 provisional p.L228I 0.000 523 0% 285 22.1% 0 - probably_damaging(1) tolerated(0.31) deleterious(0.527) HMMPfam_7tm_1,superfamily_SSF81321 OR8H1 219469 genome.wustl.edu 37 11 56058043 56058043 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005199.1 -1 provisional p.H166Y 0.022 288 0% 152 13.2% 0 - benign(0) tolerated(0.14) neutral(0.249) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR8K3 219473 genome.wustl.edu 37 11 56086518 56086518 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005202.1 +1 provisional p.V246M 0.932 360 0% 164 25.6% 0 - benign(0.208) deleterious(0.01) neutral(0.426) HMMPfam_7tm_1,superfamily_SSF81321 OR8K3 219473 genome.wustl.edu 37 11 56086627 56086627 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005202.1 +1 provisional p.P282H 0.991 243 0% 141 22% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OR8K3 219473 genome.wustl.edu 37 11 56086656 56086656 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005202.1 +1 provisional p.R292* 0.986 236 0% 133 21.1% 0 - - - - superfamily_SSF81321 OR8K1 390157 genome.wustl.edu 37 11 56114154 56114154 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002907.1 +1 provisional p.L214F 0.000 345 0% 156 22.4% 0 - benign(0.006) tolerated(0.35) neutral(0.021) HMMPfam_7tm_1,superfamily_SSF81321 OR8J1 219477 genome.wustl.edu 37 11 56127958 56127958 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005205.1 +1 provisional p.P79L 1.000 479 0% 187 27.3% 0 - benign(0.147) deleterious(0.01) neutral(0.419) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR5M10 390167 genome.wustl.edu 37 11 56345026 56345026 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004741.1 -1 provisional p.P58S 0.999 549 0% 322 18% 0 - possibly_damaging(0.728) deleterious(0.01) deleterious(0.671) HMMPfam_7tm_1,superfamily_SSF81321 APLNR 187 genome.wustl.edu 37 11 57003771 57003771 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005161.4 -1 reviewed p.R236 0.853 116 0% 110 26.4% 1 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 TNKS1BP1 85456 genome.wustl.edu 37 11 57076793 57076793 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033396.2 -1 validated p.R1131I 0.006 63 0% 56 28.6% 88 38.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TNKS1BP1 85456 genome.wustl.edu 37 11 57077271 57077271 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033396.2 -1 validated p.A972T 0.000 106 0.9% 114 18.4% 61 32.7% benign(0) tolerated(0.32) neutral(0.024) NULL TNKS1BP1 85456 genome.wustl.edu 37 11 57081165 57081165 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033396.2 -1 validated p.A333T 0.000 79 1.3% 87 20.7% 19 42.1% benign(0.013) deleterious(0.04) neutral(0.349) NULL SSRP1 6749 genome.wustl.edu 37 11 57095792 57095792 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003146.2 -1 reviewed p.K530N 0.936 307 0% 478 19.9% 233 43.7% probably_damaging(0.958) tolerated(0.2) neutral(0.451) NULL SSRP1 6749 genome.wustl.edu 37 11 57099656 57099656 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003146.2 -1 reviewed p.R324H 1.000 190 0% 188 23.4% 227 45.8% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_SSrecog SSRP1 6749 genome.wustl.edu 37 11 57101995 57101995 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003146.2 -1 reviewed p.G61V 1.000 402 0% 388 19.6% 100 44% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SSRP1 6749 genome.wustl.edu 37 11 57102043 57102043 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003146.2 -1 reviewed p.A45D 1.000 478 0% 441 23.4% 123 47.1% possibly_damaging(0.837) deleterious(0.03) deleterious(0.684) NULL SLC43A1 8501 genome.wustl.edu 37 11 57261558 57261558 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003627.4 -1 provisional p.R260M 1.000 72 0% 95 25.3% 5 60% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_MFS general substrate transporter SERPING1 710 genome.wustl.edu 37 11 57373488 57373488 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000062.2 +1 reviewed p.A231T 0.590 320 0% 198 20.2% 525 23.8% benign(0.008) tolerated(0.64) neutral(0.003) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPING1 710 genome.wustl.edu 37 11 57379257 57379257 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000062.2 +1 reviewed p.R366H 0.000 200 0% 115 15.7% 540 7.7% benign(0.001) tolerated(0.57) neutral(0.006) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPING1 710 genome.wustl.edu 37 11 57381816 57381816 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000062.2 +1 reviewed p.S422Y 0.000 209 0% 84 23.8% 566 21.3% possibly_damaging(0.892) tolerated(0.17) neutral(0.410) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin CLP1 10978 genome.wustl.edu 37 11 57426965 57426965 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006831.2 +1 validated p.N6I 0.002 227 0% 173 25.4% 6 66.6% benign(0.076) tolerated(0.17) neutral(0.065) NULL ZDHHC5 25921 genome.wustl.edu 37 11 57466653 57466653 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015457.2 +1 validated p.R582H 1.000 62 1.6% 40 25% 69 27.5% possibly_damaging(0.774) tolerated(0.13) deleterious(0.541) NULL ZDHHC5 25921 genome.wustl.edu 37 11 57466821 57466821 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015457.2 +1 validated p.S638I 1.000 65 0% 33 18.2% 77 44.1% benign(0.17) deleterious(0.01) neutral(0.421) NULL CTNND1 1500 genome.wustl.edu 37 11 57561489 57561489 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085458.1 +1 validated p.R68Q 1.000 370 0% 312 17.9% 8 62.5% probably_damaging(0.999) tolerated(0.32) deleterious(0.514) NULL CTNND1 1500 genome.wustl.edu 37 11 57564049 57564049 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085458.1 +1 validated p.D181Y 1.000 117 0% 78 24.4% 25 36% benign(0.313) tolerated(0.12) neutral(0.358) NULL CTNND1 1500 genome.wustl.edu 37 11 57569304 57569304 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085458.1 +1 validated p.S352 1.000 90 0% 56 23.2% 29 55.1% - - - NULL CTNND1 1500 genome.wustl.edu 37 11 57573419 57573419 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085458.1 +1 validated p.Q596H 0.998 321 0% 117 17.9% 38 39.4% benign(0) tolerated(0.28) neutral(0.032) superfamily_ARM repeat CTNND1 1500 genome.wustl.edu 37 11 57574424 57574424 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085458.1 +1 validated p.V644 1.000 454 0% 208 24.5% 38 34.2% - - - superfamily_ARM repeat OR9Q1 219956 genome.wustl.edu 37 11 57947713 57947713 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005212.3 +1 validated p.S266F 0.014 278 0% 106 25.5% 0 - benign(0.024) deleterious(0.03) neutral(0.365) HMMPfam_7tm_1,superfamily_SSF81321 OR1S2 219958 genome.wustl.edu 37 11 57970826 57970826 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004459.1 -1 validated p.S276 0.000 528 0% 211 23.7% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR5B12 390191 genome.wustl.edu 37 11 58206743 58206743 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004733.2 -1 validated p.E294D 0.604 242 0% 176 13.6% 0 - benign(0.085) tolerated(1) neutral(0.006) superfamily_SSF81321 ZFP91 80829 genome.wustl.edu 37 11 58384736 58384736 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053023.3 +1 reviewed p.A424T 1.000 148 0% 71 29.6% 14 50% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) superfamily_C2H2 and C2HC zinc fingers GLYATL2 219970 genome.wustl.edu 37 11 58602289 58602289 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145016.3 -1 validated p.M166I 0.000 153 0% 151 17.9% 0 - benign(0.001) tolerated(0.62) neutral(0.004) HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat) GLYATL2 219970 genome.wustl.edu 37 11 58604608 58604608 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145016.3 -1 validated p.T119I 0.123 686 0% 487 23% 0 - possibly_damaging(0.476) tolerated(0.24) neutral(0.195) HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat) GLYATL1 92292 genome.wustl.edu 37 11 58714590 58714590 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000317391 +1 known p.L10 0.016 564 0% 305 23.3% 0 - - - - HMMPfam_Gly_acyl_tr_N FAM111B 374393 genome.wustl.edu 37 11 58892444 58892444 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198947.3 +1 validated p.E292K 0.008 97 0% 69 29% 6 50% possibly_damaging(0.867) tolerated(0.06) deleterious(0.659) NULL FAM111B 374393 genome.wustl.edu 37 11 58893085 58893085 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198947.3 +1 validated p.W505* 0.853 52 0% 36 11.1% 6 33.3% - - - superfamily_Trypsin-like serine proteases FAM111B 374393 genome.wustl.edu 37 11 58893108 58893108 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198947.3 +1 validated p.A513V 0.000 63 0% 37 13.5% 5 40% benign(0.001) tolerated(1) - superfamily_Trypsin-like serine proteases OR5AN1 390195 genome.wustl.edu 37 11 59132028 59132028 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004729.1 +1 provisional p.L33M 0.480 399 0% 159 19.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF81321 OR5AN1 390195 genome.wustl.edu 37 11 59132654 59132654 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004729.1 +1 provisional p.T241 1.000 496 0% 196 16.3% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR5A2 219981 genome.wustl.edu 37 11 59189983 59189983 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001954.1 -1 provisional p.G148 0.000 176 0.6% 48 18.8% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR4D10 390197 genome.wustl.edu 37 11 59245102 59245102 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004705.1 +1 provisional p.S67F 0.046 318 0% 181 17.1% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR4D9 390199 genome.wustl.edu 37 11 59282620 59282620 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004711.1 +1 provisional p.P79T 0.981 412 0.2% 140 20.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OSBP 5007 genome.wustl.edu 37 11 59368060 59368060 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002556.2 -1 reviewed p.T407I 1.000 497 0% 308 22.1% 16 62.5% benign(0.04) tolerated(0.06) neutral(0.325) HMMPfam_Oxysterol_BP PATL1 219988 genome.wustl.edu 37 11 59406615 59406615 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152716.2 -1 validated p.L733M 1.000 348 0.3% 362 23.2% 67 29.8% probably_damaging(0.998) tolerated(0.2) deleterious(0.523) NULL PATL1 219988 genome.wustl.edu 37 11 59425037 59425037 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152716.2 -1 validated p.P196H 1.000 325 0% 289 27.3% 31 51.6% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_PAT1 MRPL16 54948 genome.wustl.edu 37 11 59577388 59577388 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017840.3 -1 reviewed p.W21R 0.026 107 0% 136 18.4% 56 48.2% probably_damaging(0.964) tolerated(0.44) neutral(0.419) NULL MS4A4A 51338 genome.wustl.edu 37 11 60073642 60073642 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148975.1 +1 reviewed p.G206R 0.985 991 0% 755 17.4% 29 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CD20 MS4A6E 245802 genome.wustl.edu 37 11 60105419 60105419 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139249.2 +1 reviewed p.A118D 0.706 223 0% 132 21.2% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_CD20 MS4A1 931 genome.wustl.edu 37 11 60233603 60233603 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021950.3 +1 reviewed p.Y182* 1.000 327 0% 252 15.5% 4 0% - - - HMMPfam_CD20 MS4A1 931 genome.wustl.edu 37 11 60234474 60234474 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021950.3 +1 reviewed p.L206F 0.999 445 0% 203 23.2% 2 0% benign(0.035) tolerated(0.29) neutral(0.031) HMMPfam_CD20 MS4A12 54860 genome.wustl.edu 37 11 60264835 60264835 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017716.2 +1 reviewed p.T15I 0.000 303 0% 266 22.2% 0 - probably_damaging(0.996) tolerated(0.81) neutral(0.462) NULL MS4A15 219995 genome.wustl.edu 37 11 60541379 60541379 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098835.1 +1 validated p.A190T 1.000 275 0% 223 23.8% 0 - benign(0) tolerated(0.37) neutral(0.019) HMMPfam_CD20 MS4A10 341116 genome.wustl.edu 37 11 60565954 60565954 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206893.3 +1 validated p.I230T 0.001 197 0% 122 13.1% 0 - benign(0) tolerated(0.66) neutral(0.003) NULL CCDC86 79080 genome.wustl.edu 37 11 60615400 60615400 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024098.3 +1 validated p.F254L 1.000 89 0% 89 16.9% 45 51.1% probably_damaging(0.995) tolerated(0.07) deleterious(0.776) NULL ZP1 22917 genome.wustl.edu 37 11 60638480 60638480 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207341.2 +1 validated p.E293* 0.020 230 0% 165 31.5% 0 - - - - HMMPfam_Zona_pellucida,HMMSmart_ZP PRPF19 27339 genome.wustl.edu 37 11 60670318 60670318 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014502.4 -1 validated p.Q94H 1.000 131 0% 128 19.5% 180 44.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Prp19 TMEM132A 54972 genome.wustl.edu 37 11 60702764 60702764 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017870.3 +1 reviewed p.A627V 0.977 68 0% 103 34% 23 39.1% possibly_damaging(0.951) tolerated(1) neutral(0.394) NULL SLC15A3 51296 genome.wustl.edu 37 11 60705442 60705442 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016582.2 -1 validated p.G497 1.000 65 0% 68 26.5% 465 36.5% unknown(0) - - HMMPfam_PTR2,superfamily_MFS general substrate transporter CD6 923 genome.wustl.edu 37 11 60777067 60777067 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006725.3 +1 validated p.G269W 0.990 41 0% 96 25% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like CD6 923 genome.wustl.edu 37 11 60777246 60777246 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006725.3 +1 validated p.Y328* 1.000 49 0% 81 25.9% 10 0% - - - HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like CD6 923 genome.wustl.edu 37 11 60785340 60785340 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006725.3 +1 validated p.S564 1.000 89 0% 96 29.2% 20 0% - - - NULL CD5 921 genome.wustl.edu 37 11 60890399 60890399 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014207.3 +1 validated p.G374C 0.288 154 0% 120 21.7% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SRCR-like DDB1 1642 genome.wustl.edu 37 11 61081794 61081794 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001923.3 -1 validated p.E525D 1.000 128 0% 71 21.1% 60 46.6% benign(0.001) tolerated(0.23) neutral(0.042) NULL DDB1 1642 genome.wustl.edu 37 11 61096905 61096905 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001923.3 -1 validated p.E160V 1.000 207 0% 212 19.8% 29 27.5% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL DAK 26007 genome.wustl.edu 37 11 61106612 61106612 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015533.3 +1 reviewed p.L90M 0.988 19 0% 16 37.5% 34 32.3% benign(0.426) deleterious(0) deleterious(0.583) HMMPfam_Dak1,superfamily_DAK1/DegV-like DAK 26007 genome.wustl.edu 37 11 61113017 61113017 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015533.3 +1 reviewed p.A477 0.914 51 0% 46 23.9% 78 48.7% - - - HMMPfam_Dak2,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain TMEM138 51524 genome.wustl.edu 37 11 61131868 61131868 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016464.4 +1 validated p.L2 0.075 238 0% 206 20.4% 33 33.3% - - - NULL CPSF7 79869 genome.wustl.edu 37 11 61183137 61183137 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024811.3 -1 validated e7+1 1.000 248 0% 127 15% 1 100% - - - - PPP1R32 220004 genome.wustl.edu 37 11 61253293 61253293 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145017.2 +1 validated p.I199 0.335 77 0% 91 17.6% 4 25% - - - NULL DAGLA 747 genome.wustl.edu 37 11 61493545 61493545 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006133.1 +1 validated p.D209E 1.000 50 0% 40 22.5% 1 100% possibly_damaging(0.772) tolerated(0.33) neutral(0.311) NULL DAGLA 747 genome.wustl.edu 37 11 61507116 61507116 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006133.1 +1 validated p.H612 1.000 115 0% 96 19.8% 1 100% - - - NULL DAGLA 747 genome.wustl.edu 37 11 61508805 61508805 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006133.1 +1 validated p.R719C 0.968 26 0% 38 13.2% 2 0% possibly_damaging(0.881) deleterious(0) deleterious(0.788) NULL DAGLA 747 genome.wustl.edu 37 11 61511846 61511846 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006133.1 +1 validated p.P1005H 0.999 32 0% 38 23.7% 2 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL C11orf9 745 genome.wustl.edu 37 11 61533110 61533110 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127392.1 +1 validated p.N20 1.000 33 0% 60 23.3% 23 34.7% - - - NULL C11orf9 745 genome.wustl.edu 37 11 61541602 61541602 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127392.1 +1 validated p.D427N 1.000 52 0% 61 23% 25 40% benign(0.268) tolerated(0.08) neutral(0.329) HMMPfam_NDT80_PhoG,superfamily_p53-like transcription factors FADS1 3992 genome.wustl.edu 37 11 61569896 61569896 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013402.4 -1 reviewed p.Y498C 1.000 162 0% 127 22% 22 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FADS1 3992 genome.wustl.edu 37 11 61570315 61570315 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013402.4 -1 reviewed p.Y471C 1.000 193 0% 139 21.6% 24 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FA_desaturase FADS2 9415 genome.wustl.edu 37 11 61631197 61631197 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004265.2 +1 reviewed p.V366M 0.994 112 0% 121 22.3% 136 44.8% possibly_damaging(0.785) deleterious(0) deleterious(0.738) HMMPfam_FA_desaturase FADS3 3995 genome.wustl.edu 37 11 61646843 61646843 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021727.3 -1 reviewed p.L155I 0.016 66 0% 65 23.1% 40 50% benign(0.055) tolerated(0.3) neutral(0.032) NULL BEST1 7439 genome.wustl.edu 37 11 61727035 61727035 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000435278 +1 known p.S379L 0.172 339 0% 363 27% 1 0% unknown(0) - - NULL BEST1 7439 genome.wustl.edu 37 11 61730182 61730182 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001139443.1 +1 reviewed p.S459N 0.000 286 0% 254 20.9% 0 - benign(0) tolerated(0.55) neutral(0.007) NULL SCGB1D1 10648 genome.wustl.edu 37 11 61959636 61959636 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006552.1 +1 reviewed p.A55D 0.000 303 0% 122 23% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin SCGB1D2 10647 genome.wustl.edu 37 11 62010903 62010903 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006551.3 +1 reviewed p.T66 0.000 361 0% 97 19.6% 1248 45.4% - - - HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin ASRGL1 80150 genome.wustl.edu 37 11 62124494 62124494 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083926.1 +1 validated p.A123 0.000 182 0% 261 16.1% 216 19.9% - - - HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) SCGB1A1 7356 genome.wustl.edu 37 11 62189875 62189875 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003357.4 +1 reviewed p.L80F 0.006 273 0% 174 12.6% 0 - probably_damaging(0.989) tolerated(0.14) deleterious(0.689) HMMPfam_Uteroglobin,HMMSmart_SM00096,superfamily_Uteroglobin-like AHNAK 79026 genome.wustl.edu 37 11 62284860 62284860 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.E5677K 1.000 151 0% 78 20.5% 144 31.9% probably_damaging(0.986) tolerated(0.24) deleterious(0.472) NULL AHNAK 79026 genome.wustl.edu 37 11 62289992 62289992 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.P3966L 1.000 490 0.2% 232 18.1% 30 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL AHNAK 79026 genome.wustl.edu 37 11 62290909 62290909 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.K3660N 1.000 644 0% 272 25.7% 19 31.5% probably_damaging(0.958) tolerated(0.13) deleterious(0.654) NULL AHNAK 79026 genome.wustl.edu 37 11 62292348 62292348 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.V3181I 0.733 537 0.4% 246 18.3% 20 40% benign(0.002) tolerated(0.81) neutral(0.001) NULL AHNAK 79026 genome.wustl.edu 37 11 62294986 62294986 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.K2301N 1.000 435 0% 225 19.1% 8 50% probably_damaging(0.999) tolerated(0.19) deleterious(0.540) NULL AHNAK 79026 genome.wustl.edu 37 11 62300061 62300061 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.V610L 0.995 114 0% 110 18.2% 6 33.3% possibly_damaging(0.59) tolerated(0.66) neutral(0.206) NULL AHNAK 79026 genome.wustl.edu 37 11 62300697 62300697 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.D398Y 0.013 154 0% 99 23.2% 3 33.3% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL AHNAK 79026 genome.wustl.edu 37 11 62300848 62300848 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001620.1 -1 validated p.L347 0.039 48 0% 33 12.1% 2 0% - - - NULL TUT1 64852 genome.wustl.edu 37 11 62343537 62343537 + Missense_Mutation SNP C C T rs150786326 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022830.2 -1 reviewed p.A552T 1.000 25 0% 19 31.6% 26 30.7% possibly_damaging(0.862) tolerated(0.09) deleterious(0.629) superfamily_PAP/OAS1 substrate-binding domain MTA2 9219 genome.wustl.edu 37 11 62363977 62363977 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004739.2 -1 reviewed p.V304F 1.000 388 0% 300 25% 98 42.8% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMSmart_SANT,HMMPfam_Myb_DNA-binding EML3 256364 genome.wustl.edu 37 11 62370660 62370660 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153265.2 -1 validated p.W773G 1.000 155 0.6% 174 10.3% 100 33% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40 repeat-like EML3 256364 genome.wustl.edu 37 11 62371473 62371473 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153265.2 -1 validated p.I704 1.000 257 0% 310 14.5% 75 24% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 EML3 256364 genome.wustl.edu 37 11 62378920 62378920 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000394776 -1 known p.H51Y 0.001 63 0% 66 28.8% 14 14.2% - - - NULL GANAB 23193 genome.wustl.edu 37 11 62402314 62402314 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198335.2 -1 validated p.H180R 1.000 171 0% 125 24% 73 39.7% possibly_damaging(0.923) deleterious(0.01) deleterious(0.778) NULL INTS5 80789 genome.wustl.edu 37 11 62415821 62415821 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030628.1 -1 provisional p.N577 1.000 58 0% 65 27.7% 32 40.6% - - - NULL C11orf48 79081 genome.wustl.edu 37 11 62437124 62437124 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024099.3 -1 validated p.S101N 0.994 242 0% 180 22.2% 15 40% possibly_damaging(0.602) deleterious(0) deleterious(0.653) NULL BSCL2 26580 genome.wustl.edu 37 11 62458098 62458098 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122955.2 -1 reviewed p.P407H 0.458 133 0% 148 16.9% 339 40.7% probably_damaging(0.966) deleterious(0.01) deleterious(0.814) NULL HNRNPUL2 221092 genome.wustl.edu 37 11 62490074 62490074 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079559.1 -1 provisional p.A365V 1.000 259 0% 225 10.7% 97 17.5% probably_damaging(0.959) tolerated(0.43) neutral(0.416) HMMPfam_SPRY,HMMSmart_SPRY TAF6L 10629 genome.wustl.edu 37 11 62550279 62550279 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006473.2 +1 reviewed p.L314 1.000 127 0% 139 20.1% 16 56.2% - - - HMMPfam_DUF1546 TMEM179B 374395 genome.wustl.edu 37 11 62556623 62556623 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199337.2 +1 validated p.L75 1.000 187 0% 270 22.2% 145 37.2% - - - NULL TMEM223 79064 genome.wustl.edu 37 11 62558156 62558156 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080501.2 -1 validated p.T183N 1.000 147 0% 166 28.9% 81 30.8% benign(0) tolerated(0.15) neutral(0.241) NULL WDR74 54663 genome.wustl.edu 37 11 62601270 62601270 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018093.2 -1 validated p.E305D 1.000 254 0% 233 11.6% 92 31.5% possibly_damaging(0.903) tolerated(0.57) neutral(0.364) superfamily_WD40 repeat-like WDR74 54663 genome.wustl.edu 37 11 62601968 62601968 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018093.2 -1 validated p.R217H 1.000 60 0% 50 28% 140 43.5% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40 repeat-like SLC3A2 6520 genome.wustl.edu 37 11 62649447 62649447 + Nonstop_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422606 +1 known p.*154R 0.976 318 0% 251 11.6% 217 20.7% - - - NULL SLC3A2 6520 genome.wustl.edu 37 11 62651929 62651929 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012661.1 +1 reviewed p.D363N 0.750 631 0% 464 20% 232 40.9% benign(0.222) tolerated(0.19) neutral(0.072) HMMSmart_SM00642,superfamily_(Trans)glycosidases SLC22A6 9356 genome.wustl.edu 37 11 62747308 62747308 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004790.3 -1 reviewed p.V384M 0.212 87 0% 57 28.1% 0 - possibly_damaging(0.671) deleterious(0.05) deleterious(0.583) HMMPfam_MFS_1,superfamily_MFS general substrate transporter RARRES3 5920 genome.wustl.edu 37 11 63312126 63312126 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004585.3 +1 validated p.F51Y 0.000 98 0% 67 26.9% 1306 42.8% possibly_damaging(0.772) tolerated(0.33) neutral(0.311) NULL HRASLS2 54979 genome.wustl.edu 37 11 63320485 63320485 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017878.1 -1 provisional p.A147V 0.000 81 0% 85 18.8% 2 100% benign(0) tolerated(0.51) neutral(0.009) NULL C11orf84 144097 genome.wustl.edu 37 11 63594579 63594579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138471.1 +1 predicted p.A372T 0.000 70 0% 69 31.9% 28 39.2% benign(0.001) tolerated(0.22) neutral(0.042) NULL MARK2 2011 genome.wustl.edu 37 11 63666538 63666538 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000513765 +1 known p.A147T 0.999 419 0% 340 22.6% 22 36.3% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MARK2 2011 genome.wustl.edu 37 11 63672325 63672325 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039469.2 +1 reviewed p.P549S 0.999 73 0% 108 23.1% 21 57.1% benign(0) tolerated(0.23) neutral(0.042) NULL MARK2 2011 genome.wustl.edu 37 11 63675746 63675746 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039469.2 +1 reviewed p.P626H 1.000 120 0.8% 185 14.6% 30 13.3% probably_damaging(0.988) deleterious(0.05) deleterious(0.783) NULL RCOR2 283248 genome.wustl.edu 37 11 63680352 63680352 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173587.3 -1 validated p.R320H 0.999 126 0% 206 12.6% 20 45% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL RCOR2 283248 genome.wustl.edu 37 11 63682377 63682377 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173587.3 -1 validated p.E105D 1.000 75 0% 109 27.5% 12 58.3% possibly_damaging(0.663) deleterious(0) deleterious(0.679) NULL STIP1 10963 genome.wustl.edu 37 11 63963209 63963209 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006819.2 +1 validated p.P199H 0.985 361 0% 356 20.5% 144 42.3% benign(0.007) deleterious(0.01) neutral(0.406) superfamily_SSF48452 STIP1 10963 genome.wustl.edu 37 11 63963265 63963265 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006819.2 +1 validated p.L218I 1.000 456 0% 474 22.6% 159 44.6% probably_damaging(0.968) tolerated(0.23) neutral(0.451) superfamily_SSF48452 FERMT3 83706 genome.wustl.edu 37 11 63978623 63978623 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178443.2 +1 reviewed p.S165I 0.998 36 0% 29 17.2% 32 0% benign(0.002) tolerated(0.12) neutral(0.261) HMMSmart_SM00295 TRPT1 83707 genome.wustl.edu 37 11 63991770 63991770 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033678.3 -1 validated p.P182 0.993 124 0% 128 21.9% 148 32.4% - - - HMMPfam_PTS_2-RNA TRPT1 83707 genome.wustl.edu 37 11 63992118 63992118 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033678.3 -1 validated p.F133L 1.000 203 0% 202 26.7% 142 31.6% benign(0.12) deleterious(0.02) neutral(0.393) HMMPfam_PTS_2-RNA PLCB3 5331 genome.wustl.edu 37 11 64021918 64021918 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000932.2 +1 reviewed p.R44H 0.923 117 0% 135 14.8% 10 30% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL PLCB3 5331 genome.wustl.edu 37 11 64024146 64024146 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000932.2 +1 reviewed p.L308 1.000 165 0% 220 21.8% 21 47.6% - - - HMMPfam_efhand_like,superfamily_EF-hand PLCB3 5331 genome.wustl.edu 37 11 64026072 64026072 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000932.2 +1 reviewed p.G380 1.000 66 0% 61 21.3% 12 33.3% - - - HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases PLCB3 5331 genome.wustl.edu 37 11 64029078 64029078 + Silent SNP G G A rs138145158 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000932.2 +1 reviewed p.S618 0.021 140 0.7% 154 18.2% 16 50% - - - HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases CCDC88B 283234 genome.wustl.edu 37 11 64120586 64120586 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032251.5 +1 reviewed p.G1187 0.971 58 0% 67 17.9% 4 0% - - - NULL PYGM 5837 genome.wustl.edu 37 11 64527193 64527193 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005609.2 -1 reviewed p.V60M 1.000 205 0% 171 16.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF53756 MAP4K2 5871 genome.wustl.edu 37 11 64557391 64557391 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004579.2 -1 reviewed p.G763 0.511 33 0% 31 12.9% 22 45.4% - - - HMMPfam_CNH,HMMSmart_CNH MAP4K2 5871 genome.wustl.edu 37 11 64557698 64557698 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004579.2 -1 reviewed p.A737V 0.994 151 0% 224 19.2% 19 15.7% benign(0.025) tolerated(0.42) neutral(0.015) HMMPfam_CNH,HMMSmart_CNH MAP4K2 5871 genome.wustl.edu 37 11 64570127 64570127 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004579.2 -1 reviewed e3-2 1.000 66 0% 79 21.5% 0 - - - - - MEN1 4221 genome.wustl.edu 37 11 64577254 64577254 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000244.3 -1 reviewed p.G110W 0.982 169 0% 127 30.7% 30 26.6% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Menin CDC42BPG 55561 genome.wustl.edu 37 11 64597448 64597448 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017525.2 -1 validated p.S1154 0.909 24 0% 20 25% 5 80% - - - HMMPfam_CNH,HMMSmart_SM00036 CDC42BPG 55561 genome.wustl.edu 37 11 64602404 64602404 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017525.2 -1 validated p.L698M 1.000 102 0% 127 24.4% 3 100% probably_damaging(1) tolerated(0.1) deleterious(0.786) NULL CDC42BPG 55561 genome.wustl.edu 37 11 64606182 64606182 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017525.2 -1 validated p.R357W 0.001 51 2% 63 30.2% 1 100% probably_damaging(0.964) deleterious(0) deleterious(0.851) HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_C ATG2A 23130 genome.wustl.edu 37 11 64666131 64666131 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015104.2 -1 validated p.P1550S 1.000 30 0% 42 33.3% 23 21.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ATG2A 23130 genome.wustl.edu 37 11 64679398 64679398 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015104.2 -1 validated p.L382I 0.921 122 0% 123 25.2% 13 38.4% benign(0.313) tolerated(0.09) neutral(0.394) NULL PPP2R5B 5526 genome.wustl.edu 37 11 64698011 64698011 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006244.3 +1 reviewed p.V281I 1.000 276 0% 294 20.7% 19 26.3% benign(0.152) tolerated(0.08) neutral(0.314) HMMPfam_B56 C11orf85 283129 genome.wustl.edu 37 11 64722234 64722234 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037225.1 -1 predicted p.L48M 0.996 497 0% 213 24.9% 0 - possibly_damaging(0.634) tolerated(0.17) neutral(0.281) NULL SNX15 29907 genome.wustl.edu 37 11 64802556 64802556 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013306.3 +1 reviewed p.E133V 0.566 23 0% 41 19.5% 8 37.5% unknown(0) - - NULL SAC3D1 29901 genome.wustl.edu 37 11 64811854 64811854 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013299.3 +1 validated p.C244* 0.915 35 0% 36 27.8% 102 30.3% - - - HMMPfam_SAC3_GANP NAALADL1 10004 genome.wustl.edu 37 11 64813959 64813959 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005468.2 -1 validated p.A547S 1.000 445 0% 509 13.8% 3 0% unknown(0) tolerated(1) - HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases NAALADL1 10004 genome.wustl.edu 37 11 64815473 64815473 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005468.2 -1 validated p.V466I 0.035 50 0% 66 22.7% 0 - benign(0.001) tolerated(0.54) neutral(0.007) HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases LOC100131416 100131416 genome.wustl.edu 37 11 64878064 64878064 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001716064.2 -1 model e3-1 1.000 103 0% 151 21.2% 189 28% benign(0.192) deleterious(0) neutral(0.463) - ZNHIT2 741 genome.wustl.edu 37 11 64883976 64883976 + Missense_Mutation SNP G G A rs184318096 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014205.2 -1 validated p.R384W 0.997 60 0% 48 12.5% 48 18.7% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL SYVN1 84447 genome.wustl.edu 37 11 64897273 64897273 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172230.2 -1 reviewed p.R508H 1.000 94 0% 104 22.1% 45 42.2% unknown(0) tolerated(0.14) - NULL SYVN1 84447 genome.wustl.edu 37 11 64897844 64897844 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172230.2 -1 reviewed p.Q371H 0.998 102 0% 95 26.3% 13 7.6% unknown(0) tolerated(0.2) - NULL SYVN1 84447 genome.wustl.edu 37 11 64898503 64898503 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172230.2 -1 reviewed p.P277S 1.000 234 0% 229 12.2% 64 14% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL SLC22A20 440044 genome.wustl.edu 37 11 64985150 64985150 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004326.4 +1 validated p.S210 1.000 58 0% 74 29.7% 0 - - - - superfamily_MFS general substrate transporter SLC22A20 440044 genome.wustl.edu 37 11 64989997 64989997 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004326.4 +1 validated p.S231R 0.983 233 0% 173 26.6% 0 - - - - NULL DPF2 5977 genome.wustl.edu 37 11 65108884 65108884 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006268.3 +1 reviewed p.L106M 1.000 172 0% 155 13.5% 23 21.7% possibly_damaging(0.882) tolerated(0.21) neutral(0.388) NULL DPF2 5977 genome.wustl.edu 37 11 65108959 65108959 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006268.3 +1 reviewed p.R131* 1.000 187 0% 169 26% 29 3.4% - - - NULL SLC25A45 283130 genome.wustl.edu 37 11 65143945 65143945 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000332723 -1 known p.C241* 0.999 181 0% 126 22.2% 7 0% probably_damaging(0.98) deleterious(0.02) deleterious(0.807) NULL SCYL1 57410 genome.wustl.edu 37 11 65302737 65302737 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020680.3 +1 reviewed p.L424I 1.000 211 0% 212 13.2% 137 20.4% possibly_damaging(0.812) tolerated(0.59) neutral(0.310) superfamily_ARM repeat PCNXL3 399909 genome.wustl.edu 37 11 65401704 65401704 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032223.2 +1 validated p.S1526 0.044 35 0% 35 37.1% 37 40.5% - - - NULL PCNXL3 399909 genome.wustl.edu 37 11 65402085 65402085 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032223.2 +1 validated p.G1593E 1.000 81 0% 93 31.2% 29 34.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Pecanex_C PCNXL3 399909 genome.wustl.edu 37 11 65402529 65402529 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032223.2 +1 validated p.D1631N 1.000 170 0% 213 26.8% 60 38.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pecanex_C KAT5 10524 genome.wustl.edu 37 11 65482327 65482327 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182710.1 +1 reviewed p.E325D 1.000 404 0% 289 20.4% 70 35.7% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat) AP5B1 91056 genome.wustl.edu 37 11 65545611 65545611 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138368.3 -1 validated p.L728I 0.987 46 0% 47 25.5% 26 34.6% - - - NULL AP5B1 91056 genome.wustl.edu 37 11 65547190 65547190 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138368.3 -1 validated p.E201D 0.018 33 0% 46 15.2% 4 25% - - - NULL CFL1 1072 genome.wustl.edu 37 11 65623470 65623470 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005507.2 -1 validated p.A83T 1.000 339 0.3% 433 20.8% 2052 33.4% benign(0.138) deleterious(0) neutral(0.456) HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins MUS81 80198 genome.wustl.edu 37 11 65629692 65629692 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025128.4 +1 validated p.G154D 0.205 191 0% 293 22.9% 15 60% probably_damaging(0.999) tolerated(0.16) deleterious(0.550) NULL EFEMP2 30008 genome.wustl.edu 37 11 65635525 65635525 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016938.3 -1 reviewed p.R326H 1.000 136 0% 150 28.7% 26 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_EGF,HMMPfam_EGF_CA CTSW 1521 genome.wustl.edu 37 11 65650596 65650596 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001335.3 +1 reviewed p.P268S 0.004 154 0% 128 27.3% 57 0% benign(0.146) tolerated(0.47) neutral(0.024) HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases FIBP 9158 genome.wustl.edu 37 11 65653099 65653099 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198897.1 -1 reviewed p.R183H 1.000 284 0% 304 22% 195 39.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FIBP DRAP1 10589 genome.wustl.edu 37 11 65687860 65687860 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006442.3 +1 reviewed p.L86M 0.998 66 0% 87 27.6% 379 30.6% possibly_damaging(0.892) deleterious(0.05) deleterious(0.697) superfamily_Histone-fold CATSPER1 117144 genome.wustl.edu 37 11 65792903 65792903 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053054.3 -1 reviewed p.G316 0.000 966 0.1% 612 23.7% 0 - - - - superfamily_Voltage-gated potassium channels PACS1 55690 genome.wustl.edu 37 11 65978705 65978705 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018026.2 +1 reviewed p.A212V 1.000 234 0% 128 18.8% 20 30% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KLC2 64837 genome.wustl.edu 37 11 66029313 66029313 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134775.1 +1 validated p.R110H 1.000 60 0% 66 33.3% 21 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Rab5-bind YIF1A 10897 genome.wustl.edu 37 11 66052910 66052910 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020470.2 -1 validated p.V195M 1.000 48 0% 62 21% 286 42.3% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_YIF1 CD248 57124 genome.wustl.edu 37 11 66082857 66082857 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020404.2 -1 validated p.P548S 0.047 456 0% 451 17.3% 24 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL CD248 57124 genome.wustl.edu 37 11 66082973 66082973 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020404.2 -1 validated p.P509H 0.802 376 0.3% 394 17% 34 0% benign(0.282) deleterious(0) deleterious(0.531) NULL RIN1 9610 genome.wustl.edu 37 11 66102887 66102887 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004292.2 -1 validated p.L180M 1.000 121 0% 128 23.4% 12 41.6% probably_damaging(0.964) tolerated(0.15) deleterious(0.647) NULL LOC100128074 100128074 genome.wustl.edu 37 11 66114516 66114516 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001716221.1 +1 model p.H105Y 0.998 20 0% 31 48.4% 8 37.5% - - - NULL NPAS4 266743 genome.wustl.edu 37 11 66192682 66192682 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178864.3 +1 validated p.D774V 1.000 102 0% 108 17.6% 0 - benign(0.007) deleterious(0.04) neutral(0.349) NULL PELI3 246330 genome.wustl.edu 37 11 66235658 66235658 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145065.2 +1 validated p.R20Q 0.358 81 0% 142 19% 3 100% benign(0.144) tolerated(0.19) neutral(0.062) NULL BBS1 582 genome.wustl.edu 37 11 66288807 66288807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024649.4 +1 reviewed p.A264T 0.860 115 0% 87 29.9% 15 46.6% benign(0) tolerated(0.46) neutral(0.012) NULL CCDC87 55231 genome.wustl.edu 37 11 66358213 66358213 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018219.2 -1 validated p.S758 0.000 218 0% 262 18.7% 1 100% - - - NULL CCDC87 55231 genome.wustl.edu 37 11 66358798 66358798 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018219.2 -1 validated p.M563I 0.000 323 0% 381 20.2% 1 0% benign(0) tolerated(0.56) neutral(0.006) NULL CCDC87 55231 genome.wustl.edu 37 11 66359536 66359536 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018219.2 -1 validated p.E317D 0.852 33 0% 46 23.9% 0 - possibly_damaging(0.667) tolerated(0.06) deleterious(0.558) NULL SPTBN2 6712 genome.wustl.edu 37 11 66463896 66463896 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006946.2 -1 reviewed p.R1377H 1.000 82 0% 147 15.6% 25 24% probably_damaging(0.974) deleterious(0.04) deleterious(0.765) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN2 6712 genome.wustl.edu 37 11 66466916 66466916 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006946.2 -1 reviewed p.A1246V 0.657 169 0% 202 20.3% 16 50% possibly_damaging(0.815) deleterious(0.01) deleterious(0.713) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN2 6712 genome.wustl.edu 37 11 66472348 66472348 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006946.2 -1 reviewed p.R800Q 1.000 20 5% 26 30.8% 6 33.3% possibly_damaging(0.707) tolerated(0.38) neutral(0.273) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat C11orf80 79703 genome.wustl.edu 37 11 66512374 66512374 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024650.3 +1 validated p.A54V 0.878 4 0.000 12 0.500 1 0% unknown(0) deleterious(0) - NULL C11orf80 79703 genome.wustl.edu 37 11 66583552 66583552 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024650.3 +1 validated p.Q406H 0.000 541 0% 269 22.7% 13 46.1% possibly_damaging(0.653) deleterious(0.01) deleterious(0.635) NULL SYT12 91683 genome.wustl.edu 37 11 66816093 66816093 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177963.3 +1 reviewed p.S377 0.491 53 0% 44 25% 0 - - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB KDM2A 22992 genome.wustl.edu 37 11 66947577 66947577 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012308.2 +1 reviewed p.D24Y 1.000 420 0% 133 9.8% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KDM2A 22992 genome.wustl.edu 37 11 66995540 66995540 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012308.2 +1 reviewed p.Y330 1.000 543 0.2% 492 22.2% 4 25% - - - superfamily_Clavaminate synthase-like ADRBK1 156 genome.wustl.edu 37 11 67048603 67048603 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001619.3 +1 reviewed p.R199C 1.000 99 0% 102 21.6% 62 19.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase ADRBK1 156 genome.wustl.edu 37 11 67050271 67050271 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001619.3 +1 reviewed p.D403 1.000 71 0% 77 22.1% 104 27.8% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ANKRD13D 338692 genome.wustl.edu 37 11 67069016 67069016 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207354.2 +1 validated p.S382N 0.994 40 0% 37 21.6% 61 27.8% benign(0.202) tolerated(0.35) neutral(0.040) NULL SSH3 54961 genome.wustl.edu 37 11 67074886 67074886 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017857.3 +1 validated p.P194H 0.992 105 0% 79 22.8% 43 37.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL POLD4 57804 genome.wustl.edu 37 11 67120167 67120167 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021173.3 -1 validated p.Q98H 0.994 19 0% 24 25% 139 24.4% probably_damaging(0.983) tolerated(0.07) deleterious(0.748) HMMPfam_DNA_pol_delta_4 PPP1CA 5499 genome.wustl.edu 37 11 67168665 67168665 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008709.1 -1 reviewed p.G32C 1.000 113 0% 131 24.4% 335 42% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL CARNS1 57571 genome.wustl.edu 37 11 67191900 67191900 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020811.1 +1 validated p.N771T 0.923 34 0% 45 35.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Glutathione synthetase ATP-binding domain-like CORO1B 57175 genome.wustl.edu 37 11 67207718 67207718 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018070.1 -1 validated p.R293Q 1.000 208 0% 189 19% 250 46.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40 repeat-like,HMMPfam_DUF1900 AIP 9049 genome.wustl.edu 37 11 67257544 67257544 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003977.2 +1 reviewed p.W168C 1.000 76 0% 96 10.4% 141 9.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF48452 PITPNM1 9600 genome.wustl.edu 37 11 67260519 67260519 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004910.2 -1 validated p.I1119 1.000 73 1.4% 93 22.6% 95 32.6% - - - HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like PITPNM1 9600 genome.wustl.edu 37 11 67262946 67262946 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004910.2 -1 validated p.Q815H 0.999 17 0% 29 20.7% 44 38.6% possibly_damaging(0.529) deleterious(0.02) deleterious(0.561) HMMPfam_DDHD PITPNM1 9600 genome.wustl.edu 37 11 67269406 67269406 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004910.2 -1 validated p.A189 1.000 70 0% 97 26.8% 27 40.7% - - - HMMPfam_IP_trans,superfamily_Bet v1-like PITPNM1 9600 genome.wustl.edu 37 11 67271627 67271627 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004910.2 -1 validated p.L9M 1.000 49 0% 38 15.8% 5 60% benign(0.136) deleterious(0.04) neutral(0.360) HMMPfam_IP_trans,superfamily_Bet v1-like GSTP1 2950 genome.wustl.edu 37 11 67352613 67352613 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398606 +1 known p.L79 0.076 136 0% 147 17.7% 3112 42.2% - - - superfamily_GST_C_like NDUFV1 4723 genome.wustl.edu 37 11 67375937 67375937 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007103.3 +1 reviewed p.R48H 1.000 252 0% 308 26.9% 121 43.8% unknown(0) deleterious(0) - NULL TBX10 347853 genome.wustl.edu 37 11 67400561 67400561 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005995.3 -1 provisional p.S188F 1.000 327 0% 378 20.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd TBX10 347853 genome.wustl.edu 37 11 67402336 67402336 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005995.3 -1 provisional p.D110N 0.978 57 0% 84 25% 0 - probably_damaging(0.979) tolerated(0.05) deleterious(0.767) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd ALDH3B2 222 genome.wustl.edu 37 11 67433088 67433088 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000695.3 -1 reviewed p.P125H 0.984 53 0% 63 23.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aldedh,superfamily_ALDH-like ALDH3B2 222 genome.wustl.edu 37 11 67434139 67434139 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000695.3 -1 reviewed p.I19 1.000 173 0% 233 20.2% 0 - - - - superfamily_ALDH-like UNC93B1 81622 genome.wustl.edu 37 11 67764210 67764210 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000227471 -1 known p.D317N 1.000 64 0% 90 24.4% 190 42.6% probably_damaging(1) tolerated(0.29) deleterious(0.529) NULL CHKA 1119 genome.wustl.edu 37 11 67837655 67837655 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001277.2 -1 reviewed e6+1 1.000 156 0% 115 19.1% 0 - - - - - CHKA 1119 genome.wustl.edu 37 11 67842196 67842196 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001277.2 -1 reviewed p.E206D 1.000 243 0% 71 19.7% 19 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like) SUV420H1 51111 genome.wustl.edu 37 11 67925466 67925466 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017635.3 -1 reviewed p.R783* 1.000 580 0.2% 292 18.5% 9 22.2% - - - NULL LRP5 4041 genome.wustl.edu 37 11 68178923 68178923 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002335.2 +1 reviewed p.W780R 1.000 59 0% 40 27.5% 51 39.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain LRP5 4041 genome.wustl.edu 37 11 68193517 68193517 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002335.2 +1 reviewed p.L1167I 1.000 49 0% 55 30.9% 78 43.5% possibly_damaging(0.916) tolerated(0.34) neutral(0.390) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain MTL5 9633 genome.wustl.edu 37 11 68483395 68483395 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004923.3 -1 reviewed p.C310* 1.000 227 0.4% 112 15.2% 1 100% - - - HMMPfam_CXC MRPL21 219927 genome.wustl.edu 37 11 68660241 68660241 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000447977 -1 known p.P224T 0.000 109 0% 48 31.2% 5 40% unknown(0) - - NULL MRGPRF 116535 genome.wustl.edu 37 11 68773544 68773544 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098515.1 -1 validated p.F78L 1.000 46 0% 42 26.2% 11 0% probably_damaging(0.99) deleterious(0.03) deleterious(0.806) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TPCN2 219931 genome.wustl.edu 37 11 68838829 68838829 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139075.3 +1 reviewed p.L301M 1.000 184 0% 182 12.1% 9 33.3% probably_damaging(0.983) deleterious(0.02) deleterious(0.812) HMMPfam_Ion_trans,superfamily_SSF81324 TPCN2 219931 genome.wustl.edu 37 11 68848947 68848947 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139075.3 +1 reviewed p.R557C 1.000 91 0% 78 25.6% 18 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_SSF81324 MYEOV 26579 genome.wustl.edu 37 11 69063727 69063727 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138768.2 +1 validated p.G270 0.000 99 0% 93 18.3% 21 71.4% - - - NULL ANO1 55107 genome.wustl.edu 37 11 70028612 70028612 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018043.5 +1 validated p.F803S 1.000 114 0% 89 25.8% 9 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF590 CTTN 2017 genome.wustl.edu 37 11 70281162 70281162 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005231.3 +1 reviewed p.D516V 1.000 73 0% 77 18.2% 154 15.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 KRTAP5-9 3846 genome.wustl.edu 37 11 71259945 71259945 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005553.3 +1 validated p.S81N 0.194 217 0% 168 26.2% 0 - unknown(0) tolerated(0.18) - PatternScan_VWFC_1,PatternScan_ZN2_CY6_FUNGAL_1 ENSG00000187811 0 genome.wustl.edu 37 11 71316496 71316496 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000343767 -1 known p.R47 1.000 106 0% 158 20.9% 0 - - - - NULL RNF121 55298 genome.wustl.edu 37 11 71671806 71671806 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018320.4 +1 reviewed p.A38T 1.000 76 0% 42 19% 19 36.8% benign(0.389) tolerated(0.71) neutral(0.126) NULL NUMA1 4926 genome.wustl.edu 37 11 71715067 71715067 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006185.2 -1 validated p.A2068S 0.019 84 0% 64 23.4% 362 36.1% benign(0.006) tolerated(0.18) neutral(0.056) NULL LAMTOR1 55004 genome.wustl.edu 37 11 71809456 71809456 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017907.1 -1 provisional p.R91H 0.999 52 0% 53 26.4% 280 37.1% unknown(0) - - NULL INPPL1 3636 genome.wustl.edu 37 11 71942194 71942194 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001567.3 +1 reviewed p.R486 0.912 114 0% 113 33.6% 38 47.3% - - - HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos INPPL1 3636 genome.wustl.edu 37 11 71942581 71942581 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001567.3 +1 reviewed p.L513M 1.000 83 0% 86 29.1% 59 50.8% probably_damaging(0.995) tolerated(0.09) deleterious(0.754) HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos INPPL1 3636 genome.wustl.edu 37 11 71948243 71948243 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001567.3 +1 reviewed p.A985 1.000 47 0% 61 19.7% 103 44.6% - - - NULL ARHGEF17 9828 genome.wustl.edu 37 11 73074857 73074857 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014786.3 +1 validated p.A1771V 0.556 125 0% 208 20.7% 8 25% benign(0) deleterious(0.04) neutral(0.349) superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase ARHGEF17 9828 genome.wustl.edu 37 11 73076913 73076913 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014786.3 +1 validated p.H1972 0.969 56 0% 74 24.3% 22 31.8% - - - NULL RAB6A 5870 genome.wustl.edu 37 11 73418518 73418518 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002869.4 -1 validated p.L148M 1.000 903 0% 514 23.3% 52 38.4% benign(0.008) tolerated(0.21) neutral(0.044) HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 UCP2 7351 genome.wustl.edu 37 11 73688976 73688976 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003355.2 -1 reviewed p.G98S 1.000 71 0% 64 23.4% 494 41% probably_damaging(1) deleterious(0.03) deleterious(0.865) superfamily_Mitoch_carrier,HMMPfam_Mito_carr C2CD3 26005 genome.wustl.edu 37 11 73809119 73809119 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015531.4 -1 validated p.L972I 0.000 250 0.4% 85 15.3% 2 50% possibly_damaging(0.926) tolerated(0.51) neutral(0.384) NULL C2CD3 26005 genome.wustl.edu 37 11 73809211 73809211 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015531.4 -1 validated p.G941V 1.000 198 0% 53 26.4% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PPME1 51400 genome.wustl.edu 37 11 73957221 73957221 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016147.1 +1 provisional p.C312Y 1.000 465 0% 228 19.7% 51 45% possibly_damaging(0.894) deleterious(0.01) deleterious(0.758) superfamily_alpha/beta-Hydrolases P4HA3 283208 genome.wustl.edu 37 11 73997411 73997411 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182904.3 -1 reviewed p.R265S 1.000 175 0% 64 20.3% 0 - benign(0.086) tolerated(0.16) neutral(0.066) superfamily_TPR-like LOC100287896 100287896 genome.wustl.edu 37 11 74208702 74208702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343118.1 +1 model p.T251N 0.326 312 0% 317 15.8% 7 42.8% - - - NULL POLD3 10714 genome.wustl.edu 37 11 74336588 74336588 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006591.1 +1 validated p.P290H 1.000 84 0% 95 13.7% 8 50% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_CDC27 OR2AT4 341152 genome.wustl.edu 37 11 74800540 74800540 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005285.1 -1 provisional p.T73 0.002 572 0% 321 13.7% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SLCO2B1 11309 genome.wustl.edu 37 11 74876954 74876954 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007256.3 +1 validated p.H136 1.000 105 0% 69 26.1% 7 0% - - - HMMPfam_OATP,superfamily_MFS general substrate transporter SLCO2B1 11309 genome.wustl.edu 37 11 74899246 74899246 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007256.3 +1 validated p.Q346H 0.953 161 0% 97 24.7% 12 16.6% probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_OATP,superfamily_MFS general substrate transporter ARRB1 408 genome.wustl.edu 37 11 74977255 74977255 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004041.3 -1 validated p.K403N 1.000 315 0.3% 251 21.1% 25 16% benign(0.028) tolerated(0.36) neutral(0.022) NULL ARRB1 408 genome.wustl.edu 37 11 74984002 74984002 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004041.3 -1 validated p.R312H 1.000 223 0% 178 32.6% 9 33.3% possibly_damaging(0.753) deleterious(0) deleterious(0.721) HMMPfam_Arrestin_C,superfamily_E set domains RPS3 6188 genome.wustl.edu 37 11 75111792 75111792 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005.3 +1 reviewed p.L29 1.000 419 0% 414 14.5% 2015 19.4% - - - superfamily_Prokaryotic type KH domain (KH-domain type II) GDPD5 81544 genome.wustl.edu 37 11 75161022 75161022 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030792.6 -1 validated p.L128M 1.000 27 0% 29 24.1% 7 71.4% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL MAP6 4135 genome.wustl.edu 37 11 75298157 75298157 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033063.1 -1 reviewed p.R797* 1.000 257 0% 273 23.4% 4 0% - - - NULL MAP6 4135 genome.wustl.edu 37 11 75298580 75298580 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033063.1 -1 reviewed p.A656T 0.021 473 0% 411 26.3% 2 0% probably_damaging(0.996) tolerated(0.35) deleterious(0.482) NULL DGAT2 84649 genome.wustl.edu 37 11 75508212 75508212 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032564.3 +1 validated p.P215H 1.000 144 0% 88 17% 1 0% probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_DAGAT UVRAG 7405 genome.wustl.edu 37 11 75694527 75694527 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003369.3 +1 reviewed p.H266Y 1.000 242 0.4% 180 19.4% 15 33.3% benign(0.202) tolerated(0.07) neutral(0.339) NULL UVRAG 7405 genome.wustl.edu 37 11 75852428 75852428 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003369.3 +1 reviewed p.R691C 1.000 115 0% 62 27.4% 36 38.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL WNT11 7481 genome.wustl.edu 37 11 75902891 75902891 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004626.2 -1 reviewed p.A203T 0.999 32 0% 49 18.4% 1 0% benign(0.153) tolerated(0.47) neutral(0.025) HMMPfam_wnt,HMMSmart_WNT1 C11orf30 56946 genome.wustl.edu 37 11 76255814 76255814 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020193.3 +1 validated p.P1074L 1.000 425 0% 145 20% 7 42.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL OMP 4975 genome.wustl.edu 37 11 76814231 76814231 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006189.1 +1 reviewed p.D116Y 0.996 59 0% 76 25% 0 - possibly_damaging(0.916) deleterious(0.01) deleterious(0.772) HMMPfam_Olfactory_mark,superfamily_Olfactory_marker CAPN5 726 genome.wustl.edu 37 11 76825334 76825334 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004055.4 +1 reviewed p.A185T 1.000 166 0% 144 17.4% 2 50% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001 CAPN5 726 genome.wustl.edu 37 11 76826541 76826541 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004055.4 +1 reviewed p.G267D 1.000 29 0% 23 21.7% 1 100% possibly_damaging(0.832) tolerated(0.13) deleterious(0.570) HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001 CAPN5 726 genome.wustl.edu 37 11 76834862 76834862 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004055.4 +1 reviewed p.L623 0.989 74 0% 90 26.7% 11 18.1% - - - NULL MYO7A 4647 genome.wustl.edu 37 11 76867920 76867920 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000260.3 +1 reviewed p.A202V 1.000 62 0% 51 31.4% 1 0% unknown(0) deleterious(0) - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO7A 4647 genome.wustl.edu 37 11 76903162 76903162 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000260.3 +1 reviewed p.K1331E 1.000 92 0% 65 20% 3 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_FERM_N,HMMSmart_SM00295 GDPD4 220032 genome.wustl.edu 37 11 76940274 76940274 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182833.1 -1 provisional p.P465S 0.997 211 0% 93 21.5% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL RSF1 51773 genome.wustl.edu 37 11 77451875 77451875 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016578.3 -1 validated p.G160D 1.000 339 0.3% 349 18.3% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C11orf67 28971 genome.wustl.edu 37 11 77580783 77580783 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024684.2 +1 predicted p.Q50* 1.000 645 0% 196 29.1% 42 7.1% - - - HMMPfam_DUF498,superfamily_Hypothetical protein MT938 (MTH938) INTS4 92105 genome.wustl.edu 37 11 77602750 77602750 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033547.3 -1 validated p.L809M 0.996 197 0% 67 16.4% 45 28.8% possibly_damaging(0.915) tolerated(0.19) neutral(0.416) NULL KCTD14 65987 genome.wustl.edu 37 11 77728123 77728123 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023930.3 -1 validated p.T95N 0.657 204 0.5% 106 22.6% 24 54.1% benign(0.167) tolerated(0.09) neutral(0.311) HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold KCTD14 65987 genome.wustl.edu 37 11 77728197 77728197 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023930.3 -1 validated p.S70 0.004 147 0% 70 24.3% 28 35.7% - - - HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold USP35 57558 genome.wustl.edu 37 11 77911266 77911266 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020798.2 +1 provisional p.E342K 1.000 179 0% 227 20.7% 3 33.3% possibly_damaging(0.919) tolerated(0.06) deleterious(0.692) NULL GAB2 9846 genome.wustl.edu 37 11 77937924 77937924 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080491.2 -1 reviewed p.T265N 1.000 105 0% 74 24.3% 6 50% benign(0.174) tolerated(0.19) neutral(0.066) NULL NARS2 79731 genome.wustl.edu 37 11 78147735 78147735 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024678.4 -1 validated p.P472H 1.000 268 0.4% 143 14.7% 53 26.4% benign(0.192) deleterious(0) neutral(0.463) HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases ODZ4 26011 genome.wustl.edu 37 11 78369519 78369519 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098816.2 -1 validated p.L2632M 1.000 156 0% 127 16.5% 1 0% possibly_damaging(0.893) tolerated(0.11) deleterious(0.623) NULL ODZ4 26011 genome.wustl.edu 37 11 78413130 78413130 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098816.2 -1 validated p.P1510S 1.000 220 0% 101 20.8% 0 - probably_damaging(1) deleterious(0.05) deleterious(0.845) superfamily_SSF101898,superfamily_TolB_C ODZ4 26011 genome.wustl.edu 37 11 78600872 78600872 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098816.2 -1 validated p.V348I 0.996 184 0.5% 149 24.2% 0 - benign(0.001) tolerated(0.24) neutral(0.037) NULL ODZ4 26011 genome.wustl.edu 37 11 78600955 78600955 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098816.2 -1 validated p.R320H 1.000 224 0% 199 22.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Ten_N C11orf82 220042 genome.wustl.edu 37 11 82645045 82645045 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145018.3 +1 validated p.L889I 0.054 131 0% 62 30.6% 12 33.3% benign(0.31) tolerated(0.42) neutral(0.111) NULL PCF11 51585 genome.wustl.edu 37 11 82880133 82880133 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015885.3 +1 validated p.G919V 1.000 209 0% 124 29.8% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ANKRD42 338699 genome.wustl.edu 37 11 82947551 82947551 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182603.2 +1 validated p.R312M 1.000 206 0.5% 105 19% 3 0% probably_damaging(0.982) deleterious(0) deleterious(0.871) superfamily_Ankyrin repeat SYTL2 54843 genome.wustl.edu 37 11 85406361 85406361 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206927.2 -1 reviewed p.V1232 0.562 219 0% 106 18.9% 3 0% - - - HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) SYTL2 54843 genome.wustl.edu 37 11 85436784 85436784 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206927.2 -1 reviewed p.R239Q 0.000 250 0% 172 11.6% 0 - possibly_damaging(0.656) tolerated(0.06) deleterious(0.553) NULL CCDC83 220047 genome.wustl.edu 37 11 85627151 85627151 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173556.3 +1 provisional p.L350F 0.000 255 0% 105 21.9% 0 - benign(0.001) tolerated(0.28) neutral(0.032) NULL PICALM 8301 genome.wustl.edu 37 11 85711735 85711735 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007166.2 -1 validated p.M369L 1.000 134 0% 69 10.1% 48 14.5% benign(0) tolerated(0.3) neutral(0.029) NULL EED 8726 genome.wustl.edu 37 11 85977211 85977211 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003797.2 +1 reviewed p.M271I 1.000 226 0% 134 24.6% 15 20% benign(0) tolerated(0.21) neutral(0.044) superfamily_WD40 repeat-like EED 8726 genome.wustl.edu 37 11 85988963 85988963 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003797.2 +1 reviewed p.L377I 1.000 127 0% 107 20.6% 33 3% benign(0.336) tolerated(0.31) neutral(0.133) superfamily_WD40 repeat-like CCDC81 60494 genome.wustl.edu 37 11 86103837 86103837 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000445632 +1 known p.N185D 1.000 257 0% 109 32.1% 0 - possibly_damaging(0.944) deleterious(0.03) deleterious(0.753) NULL FZD4 8322 genome.wustl.edu 37 11 86662289 86662289 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012193.2 -1 reviewed p.T503 0.205 350 0% 423 23.6% 5 60% unknown(0) - - HMMPfam_Frizzled GRM5 2915 genome.wustl.edu 37 11 88300781 88300781 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143831.2 -1 reviewed p.A690 1.000 448 0% 130 16.9% 0 - - - - HMMPfam_7tm_3 TYR 7299 genome.wustl.edu 37 11 88911247 88911247 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000372.4 +1 reviewed p.D42 0.643 122 0.8% 105 16.2% 0 - - - - NULL TYR 7299 genome.wustl.edu 37 11 89018089 89018089 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000372.4 +1 reviewed p.L445M 1.000 170 0% 105 20% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Di-copper centre-containing domain TYR 7299 genome.wustl.edu 37 11 89028413 89028413 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000372.4 +1 reviewed p.A490V 0.012 119 0% 105 31.4% 0 - benign(0) tolerated(0.33) neutral(0.024) NULL NOX4 50507 genome.wustl.edu 37 11 89182639 89182639 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016931.3 -1 reviewed p.I106 0.981 239 0% 62 21% 3 66.6% - - - HMMPfam_Ferric_reduct TRIM77P 390231 genome.wustl.edu 37 11 89447534 89447534 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343107.1 +1 model p.E228* 0.000 283 0% 108 20.4% 0 - - - - NULL ENSG00000234376 0 genome.wustl.edu 37 11 89486461 89486461 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000411859 -1 known p.P225L 0.999 111 0% 83 10.8% 0 - - - - HMMSmart_SM00398,superfamily_HMG-box ENSG00000204456 0 genome.wustl.edu 37 11 89499927 89499927 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000375974 -1 known p.F147V 0.000 255 0% 125 17.6% 0 - - - - HMMPfam_SPRY TRIM64B 642446 genome.wustl.edu 37 11 89604178 89604178 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000329862 -1 known p.P321S 0.000 158 0% 183 20.8% 0 - benign(0.002) tolerated(0.63) neutral(0.004) NULL ENSG00000223709 0 genome.wustl.edu 37 11 89796053 89796053 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436580 -1 known p.C37 0.684 191 0% 134 17.2% 0 - - - - HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box NAALAD2 10003 genome.wustl.edu 37 11 89868804 89868804 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005467.3 +1 reviewed p.E54K 0.985 542 0% 452 47.3% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL NAALAD2 10003 genome.wustl.edu 37 11 89892459 89892459 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005467.3 +1 reviewed p.V315M 1.000 425 0% 371 20.8% 0 - unknown(0) - - superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases ENSG00000214391 0 genome.wustl.edu 37 11 90016619 90016619 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000318973 +1 known p.H265R 1.000 509 0% 260 23.8% 0 - - - - superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C ENSG00000214391 0 genome.wustl.edu 37 11 90016745 90016745 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000318973 +1 known p.R307H 1.000 260 0.4% 111 12.6% 1 0% - - - superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C FAT3 120114 genome.wustl.edu 37 11 92087538 92087538 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.D754N 1.000 160 0% 46 23.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92531126 92531126 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.P1649 0.073 193 0% 46 21.7% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92532944 92532944 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.K2255N 0.980 317 0% 71 26.8% 0 - benign(0.364) tolerated(0.4) neutral(0.132) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92533025 92533025 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.D2282 1.000 443 0% 97 26.8% 0 - - - - HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92533851 92533851 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.L2558 1.000 207 0% 59 30.5% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92534392 92534392 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.V2738G 0.742 210 0% 54 22.2% 0 - possibly_damaging(0.772) tolerated(0.08) deleterious(0.587) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92539531 92539531 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.A3033T 0.998 299 0% 60 21.7% 0 - benign(0.001) tolerated(0.48) neutral(0.011) superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92543083 92543083 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.G3108R 1.000 167 0% 31 16.1% 0 - probably_damaging(0.999) tolerated(0.14) deleterious(0.740) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92568197 92568197 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.V3345I 0.952 108 0% 32 15.6% 0 - benign(0.016) tolerated(0.8) neutral(0.001) superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92577230 92577230 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.P3566H 1.000 214 0% 100 26% 0 - possibly_damaging(0.944) tolerated(0.06) deleterious(0.711) HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92600094 92600094 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.T3949M 0.941 40 0% 45 26.7% 0 - probably_damaging(0.98) deleterious(0.02) deleterious(0.807) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 FAT3 120114 genome.wustl.edu 37 11 92624183 92624183 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008781.2 +1 validated p.S4526 0.790 75 0% 50 28% 0 - - - - NULL MTNR1B 4544 genome.wustl.edu 37 11 92715304 92715304 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005959.3 +1 reviewed p.A305 0.987 152 0% 130 18.5% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 SLC36A4 120103 genome.wustl.edu 37 11 92917673 92917673 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152313.2 -1 provisional p.L65I 1.000 300 0% 271 21.4% 7 0% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_Aa_trans SLC36A4 120103 genome.wustl.edu 37 11 92918856 92918856 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152313.2 -1 provisional e2+1 1.000 214 0% 160 18.1% 0 - - - - - CCDC67 159989 genome.wustl.edu 37 11 93088649 93088649 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181645.3 +1 validated p.D48N 0.999 319 0% 122 23.8% 0 - probably_damaging(0.983) tolerated(0.07) deleterious(0.748) NULL KIAA1731 85459 genome.wustl.edu 37 11 93430450 93430450 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033395.1 +1 validated p.P791H 0.559 251 0% 102 20.6% 1 100% benign(0.031) deleterious(0) neutral(0.446) NULL KIAA1731 85459 genome.wustl.edu 37 11 93431460 93431460 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033395.1 +1 validated p.L1128V 0.005 129 0% 61 16.4% 2 0% unknown(0) tolerated(0.3) - NULL KIAA1731 85459 genome.wustl.edu 37 11 93432860 93432860 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033395.1 +1 validated p.K1594N 0.000 114 0% 30 13.3% 4 25% benign(0.083) deleterious(0.01) neutral(0.412) NULL KIAA1731 85459 genome.wustl.edu 37 11 93432876 93432876 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033395.1 +1 validated p.Q1600* 0.066 120 0% 29 17.2% 3 33.3% - - - NULL TAF1D 79101 genome.wustl.edu 37 11 93472437 93472437 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024116.3 -1 validated p.V12M 0.000 592 0% 399 21.6% 32 40.6% possibly_damaging(0.519) tolerated(0.08) deleterious(0.474) NULL HEPHL1 341208 genome.wustl.edu 37 11 93837734 93837734 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098672.1 +1 validated p.R908Q 1.000 417 0% 213 16.9% 0 - probably_damaging(0.99) tolerated(0.12) deleterious(0.702) superfamily_Cupredoxin PIWIL4 143689 genome.wustl.edu 37 11 94353018 94353018 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152431.2 +1 validated p.T754N 0.998 373 0% 149 10.7% 11 45.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Piwi,superfamily_Ribonuclease H-like AMOTL1 154810 genome.wustl.edu 37 11 94563341 94563341 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130847.2 +1 reviewed p.D513E 0.994 278 0% 193 14.5% 1 0% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) NULL KDM4D 55693 genome.wustl.edu 37 11 94731914 94731914 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018039.2 +1 validated p.L460 0.002 35 0% 34 26.5% 4 100% - - - NULL KDM4DL 390245 genome.wustl.edu 37 11 94758772 94758772 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450979 +1 known p.T17 0.646 234 0% 140 21.4% 0 - - - - HMMPfam_JmjN KDM4DL 390245 genome.wustl.edu 37 11 94760192 94760192 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450979 +1 known p.R491G 0.000 129 0% 92 20.7% 0 - benign(0.009) deleterious(0.01) neutral(0.406) NULL MAML2 84441 genome.wustl.edu 37 11 95825795 95825795 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032427.1 -1 validated p.S467Y 0.287 62 0% 24 16.7% 4 75% unknown(0) deleterious(0.03) - NULL CCDC82 79780 genome.wustl.edu 37 11 96092254 96092254 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024725.3 -1 validated p.C490Y 1.000 793 0% 538 21.4% 23 21.7% probably_damaging(0.996) tolerated(0.09) deleterious(0.758) NULL JRKL 8690 genome.wustl.edu 37 11 96124412 96124412 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003772.3 +1 reviewed p.P200H 0.003 72 0% 102 26.5% 8 62.5% benign(0.293) deleterious(0) deleterious(0.535) HMMPfam_DDE CNTN5 53942 genome.wustl.edu 37 11 100095464 100095464 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014361.2 +1 reviewed p.L642P 1.000 390 0.3% 113 13.3% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin ANGPTL5 253935 genome.wustl.edu 37 11 101765653 101765653 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178127.4 -1 validated p.T268 0.993 263 0% 222 26.6% 0 - - - - HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like ANGPTL5 253935 genome.wustl.edu 37 11 101777954 101777954 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178127.4 -1 validated p.E41* 0.925 442 0% 512 20.9% 0 - - - - NULL KIAA1377 57562 genome.wustl.edu 37 11 101833546 101833546 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020802.2 +1 validated p.I594L 0.619 47 0% 31 35.5% 0 - benign(0.063) tolerated(0.14) neutral(0.254) NULL KIAA1377 57562 genome.wustl.edu 37 11 101849107 101849107 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020802.2 +1 validated p.A959T 0.039 310 0% 186 25.3% 0 - benign(0.001) tolerated(0.13) neutral(0.253) NULL BIRC2 329 genome.wustl.edu 37 11 102221118 102221118 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001166.3 +1 reviewed p.S178I 0.995 205 0.5% 225 21.8% 11 27.2% possibly_damaging(0.623) tolerated(0.26) neutral(0.251) superfamily_SSF57924 TMEM123 114908 genome.wustl.edu 37 11 102272364 102272364 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052932.2 -1 reviewed p.V170I 1.000 257 0% 179 24% 91 38.4% benign(0.417) tolerated(0.15) neutral(0.376) NULL MMP10 4319 genome.wustl.edu 37 11 102650033 102650033 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002425.2 -1 reviewed p.A136D 1.000 475 0% 317 13.6% 24 8.3% probably_damaging(1) deleterious(0) deleterious(0.945) "HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain" DYNC2H1 79659 genome.wustl.edu 37 11 103006564 103006564 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080463.1 +1 reviewed p.D821Y 1.000 315 0% 173 23.7% 0 - benign(0.034) deleterious(0.02) neutral(0.385) NULL DYNC2H1 79659 genome.wustl.edu 37 11 103014071 103014071 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080463.1 +1 reviewed p.E883D 1.000 478 0% 381 22.8% 0 - possibly_damaging(0.823) deleterious(0) deleterious(0.756) NULL DYNC2H1 79659 genome.wustl.edu 37 11 103126151 103126151 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080463.1 +1 reviewed p.A3412D 1.000 311 0% 105 22.9% 0 - benign(0.212) deleterious(0.01) neutral(0.426) NULL DYNC2H1 79659 genome.wustl.edu 37 11 103175365 103175365 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080463.1 +1 reviewed p.M3773I 1.000 323 0% 107 22.4% 1 0% benign(0.019) tolerated(0.09) neutral(0.297) HMMPfam_Dynein_heavy DYNC2H1 79659 genome.wustl.edu 37 11 103191806 103191806 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080463.1 +1 reviewed p.A3932D 1.000 313 0% 248 19.4% 1 0% possibly_damaging(0.859) deleterious(0) deleterious(0.776) HMMPfam_Dynein_heavy DYNC2H1 79659 genome.wustl.edu 37 11 103191954 103191954 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080463.1 +1 reviewed p.S3981 0.980 367 0% 270 20.7% 5 20% - - - HMMPfam_Dynein_heavy PDGFD 80310 genome.wustl.edu 37 11 103814213 103814213 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025208.4 -1 reviewed p.R247* 1.000 249 0% 87 25.3% 0 - - - - NULL PDGFD 80310 genome.wustl.edu 37 11 103814333 103814333 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025208.4 -1 reviewed p.A207T 1.000 338 0% 108 16.7% 1 0% possibly_damaging(0.922) deleterious(0.05) deleterious(0.717) NULL DDI1 414301 genome.wustl.edu 37 11 103908438 103908438 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001711.2 +1 validated p.Q296H 0.993 244 0% 327 22.6% 0 - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) superfamily_Pept_Aspartic,HMMPfam_Asp_protease CASP4 837 genome.wustl.edu 37 11 104820297 104820297 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001225.3 -1 reviewed p.V252I 1.000 592 0% 130 26.2% 243 36.2% possibly_damaging(0.605) tolerated(0.27) neutral(0.243) HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_CYS,superfamily_Caspase-like CASP5 838 genome.wustl.edu 37 11 104877934 104877934 + Nonsense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136112.1 -1 reviewed p.Y116* 0.000 385 0% 177 19.2% 1 0% - - - HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain GRIA4 2893 genome.wustl.edu 37 11 105774625 105774625 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000829.3 +1 reviewed p.R324M 1.000 340 0% 127 24.4% 0 - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_ANF_receptor,superfamily_SSF53822 GRIA4 2893 genome.wustl.edu 37 11 105795133 105795133 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000829.3 +1 reviewed p.E495D 1.000 233 0% 63 25.4% 0 - benign(0.001) tolerated(1) - HMMSmart_PBPe,superfamily_SSF53850 GRIA4 2893 genome.wustl.edu 37 11 105845109 105845109 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000829.3 +1 reviewed p.A828T 1.000 557 0% 293 16.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Lig_chan MSANTD4 84437 genome.wustl.edu 37 11 105880291 105880291 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032424.1 -1 validated p.R337* 0.994 290 0% 192 20.8% 2 0% - - - NULL MSANTD4 84437 genome.wustl.edu 37 11 105880531 105880531 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032424.1 -1 validated p.L257M 1.000 200 0% 140 19.3% 2 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL MSANTD4 84437 genome.wustl.edu 37 11 105880582 105880582 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032424.1 -1 validated p.L240M 1.000 233 0% 152 30.3% 5 0% probably_damaging(0.999) tolerated(0.14) deleterious(0.740) NULL AASDHPPT 60496 genome.wustl.edu 37 11 105967583 105967583 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015423.2 +1 reviewed p.D293 1.000 306 0% 149 28.9% 36 50% - - - NULL ELMOD1 55531 genome.wustl.edu 37 11 107502335 107502335 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018712.3 +1 validated p.P74 0.981 243 0.4% 100 18% 0 - - - - NULL ELMOD1 55531 genome.wustl.edu 37 11 107518314 107518314 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018712.3 +1 validated p.L181 0.997 426 0% 258 24% 0 - - - - HMMPfam_ELMO_CED12 RAB39A 54734 genome.wustl.edu 37 11 107799359 107799359 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017516.1 +1 provisional p.S22Y 1.000 42 0% 27 29.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases NPAT 4863 genome.wustl.edu 37 11 108043298 108043298 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002519.2 -1 validated p.G805W 0.019 148 0% 60 23.3% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NPAT 4863 genome.wustl.edu 37 11 108060041 108060041 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002519.2 -1 validated p.G116 1.000 336 0% 277 26.7% 1 0% - - - NULL ATM 472 genome.wustl.edu 37 11 108099957 108099957 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000051.3 +1 reviewed p.P80S 1.000 123 0% 102 25.5% 5 20% benign(0) tolerated(0.71) neutral(0.002) NULL ATM 472 genome.wustl.edu 37 11 108100018 108100018 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000051.3 +1 reviewed p.L100W 1.000 171 0% 143 23.1% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ATM 472 genome.wustl.edu 37 11 108121756 108121756 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000051.3 +1 reviewed p.E522* 1.000 291 0% 162 21% 0 - - - - superfamily_ARM repeat ATM 472 genome.wustl.edu 37 11 108143318 108143318 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000051.3 +1 reviewed p.L1046R 1.000 499 0% 334 20.1% 0 - possibly_damaging(0.929) deleterious(0) deleterious(0.821) superfamily_ARM repeat ATM 472 genome.wustl.edu 37 11 108180947 108180947 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000051.3 +1 reviewed p.V1941 0.999 337 0% 157 11.5% 1 0% - - - superfamily_ARM repeat ATM 472 genome.wustl.edu 37 11 108206584 108206584 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000051.3 +1 reviewed p.L2722M 1.000 263 0% 91 16.5% 3 0% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1 C11orf65 160140 genome.wustl.edu 37 11 108253896 108253896 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152587.3 -1 validated p.R265M 0.594 256 0% 136 24.3% 1 0% benign(0.267) tolerated(0.08) neutral(0.328) NULL C11orf65 160140 genome.wustl.edu 37 11 108264071 108264071 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152587.3 -1 validated p.H199Y 0.001 808 0% 396 23.5% 3 100% benign(0.282) tolerated(0.16) neutral(0.146) NULL EXPH5 23086 genome.wustl.edu 37 11 108384204 108384204 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015065.2 -1 validated p.S677I 0.000 430 0% 290 20.7% 0 - possibly_damaging(0.924) deleterious(0.01) deleterious(0.778) NULL EXPH5 23086 genome.wustl.edu 37 11 108385448 108385448 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015065.2 -1 validated p.H262 0.006 567 0% 335 22.4% 1 0% - - - NULL ZC3H12C 85463 genome.wustl.edu 37 11 110035530 110035530 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033390.1 +1 validated p.P574T 1.000 268 0% 153 15% 0 - benign(0.265) tolerated(0.45) neutral(0.040) NULL ARHGAP20 57569 genome.wustl.edu 37 11 110454445 110454445 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020809.2 -1 validated p.P478S 1.000 284 0% 94 24.5% 0 - probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP ARHGAP20 57569 genome.wustl.edu 37 11 110485285 110485285 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020809.2 -1 validated p.Y210 0.995 243 0.4% 193 20.7% 0 - - - - HMMPfam_RA POU2AF1 5450 genome.wustl.edu 37 11 111229555 111229555 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006235.2 -1 validated p.K35N 0.998 83 0% 59 16.9% 13 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_PD-C2-AF1 FDXACB1 91893 genome.wustl.edu 37 11 111745772 111745772 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138378.1 -1 validated p.Q583H 1.000 519 0% 576 21.4% 9 44.4% benign(0.416) tolerated(0.23) neutral(0.176) HMMPfam_FDX-ACB,superfamily_Anticodon-binding domain of PheRS C11orf1 64776 genome.wustl.edu 37 11 111753295 111753295 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022761.2 +1 validated p.I83 0.000 281 0% 226 19.5% 98 30.6% - - - HMMPfam_DUF1143 DIXDC1 85458 genome.wustl.edu 37 11 111866284 111866284 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037954.2 +1 validated p.E562* 1.000 124 0% 70 17.1% 1 0% probably_damaging(0.998) tolerated(0.05) deleterious(0.820) NULL DIXDC1 85458 genome.wustl.edu 37 11 111888560 111888560 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440460 +1 known p.R640Q 1.000 524 0.2% 357 19% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DIX,HMMSmart_SM00021 SDHD 6392 genome.wustl.edu 37 11 111965680 111965680 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000375549 +1 known p.L156M 1.000 73 0% 29 20.7% 144 4.8% probably_damaging(0.987) deleterious(0.02) deleterious(0.820) HMMPfam_CybS BCO2 83875 genome.wustl.edu 37 11 112085592 112085592 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031938.4 +1 validated p.F480L 1.000 629 0.2% 587 21% 0 - possibly_damaging(0.746) deleterious(0.01) deleterious(0.679) HMMPfam_RPE65 NCAM1 4684 genome.wustl.edu 37 11 113102379 113102379 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000401611 +1 known p.H240Y 1.000 66 0% 50 26% 1 0% benign(0.215) tolerated(0.4) neutral(0.037) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 NCAM1 4684 genome.wustl.edu 37 11 113126681 113126681 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000401611 +1 known p.D544 0.990 131 0% 41 22% 1 0% - - - superfamily_FN_III-like TTC12 54970 genome.wustl.edu 37 11 113222013 113222013 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017868.3 +1 validated p.G434C 0.003 228 0% 105 19% 13 38.4% possibly_damaging(0.933) deleterious(0) deleterious(0.824) superfamily_ARM-type_fold ANKK1 255239 genome.wustl.edu 37 11 113265762 113265762 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178510.1 +1 reviewed p.E198K 1.000 123 0% 102 17.6% 0 - possibly_damaging(0.866) deleterious(0.01) deleterious(0.741) superfamily_Kinase_like,HMMPfam_Pkinase DRD2 1813 genome.wustl.edu 37 11 113283486 113283486 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000795.3 -1 reviewed p.P310 0.000 354 0% 171 21.1% 1 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZW10 9183 genome.wustl.edu 37 11 113628411 113628411 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004724.2 -1 reviewed p.L300I 0.598 176 0% 104 28.8% 14 28.5% possibly_damaging(0.925) tolerated(0.07) deleterious(0.693) HMMPfam_Zw10 USP28 57646 genome.wustl.edu 37 11 113672230 113672230 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020886.2 -1 validated p.C1011* 1.000 313 0% 134 15.7% 8 37.5% - - - NULL USP28 57646 genome.wustl.edu 37 11 113675639 113675639 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020886.2 -1 validated p.R844* 0.999 442 0% 228 21.5% 6 0% - - - NULL HTR3B 9177 genome.wustl.edu 37 11 113803769 113803769 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006028.3 +1 reviewed p.S217I 0.001 341 0% 132 18.2% 0 - benign(0.01) tolerated(0.2) neutral(0.050) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like HTR3A 3359 genome.wustl.edu 37 11 113860364 113860364 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213621.3 +1 reviewed p.A471V 1.000 42 0% 30 20% 0 - possibly_damaging(0.768) tolerated(0.51) neutral(0.294) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM ZBTB16 7704 genome.wustl.edu 37 11 113935069 113935069 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018011.1 +1 reviewed p.P349 0.000 94 0% 95 21.1% 1 0% - - - NULL REXO2 25996 genome.wustl.edu 37 11 114316750 114316750 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015523.3 +1 validated p.Q157H 1.000 353 0% 385 18.2% 72 47.2% benign(0.002) tolerated(0.05) neutral(0.345) HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T FAM55A 120400 genome.wustl.edu 37 11 114392866 114392866 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152315.2 -1 validated p.F348I 0.016 522 0% 251 13.9% 0 - benign(0.075) deleterious(0) neutral(0.450) NULL FAM55A 120400 genome.wustl.edu 37 11 114392980 114392980 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152315.2 -1 validated p.R310C 0.990 343 0.3% 124 18.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL CADM1 23705 genome.wustl.edu 37 11 115047299 115047299 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014333.3 -1 validated p.T408 0.999 524 0% 307 11.1% 16 0% - - - HMMSmart_SM00294 CADM1 23705 genome.wustl.edu 37 11 115080365 115080365 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014333.3 -1 validated p.T336N 1.000 134 0% 36 16.7% 13 15.3% unknown(0) tolerated(0.13) - NULL SIK3 23387 genome.wustl.edu 37 11 116733035 116733035 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000375288 -1 known p.S30N 1.000 417 0% 173 13.9% 7 0% unknown(0) - - NULL PAFAH1B2 5049 genome.wustl.edu 37 11 117023240 117023240 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002572.3 +1 validated p.S26Y 1.000 316 0% 248 22.2% 6 66.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_SGNH hydrolase SIDT2 51092 genome.wustl.edu 37 11 117054801 117054801 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040455.1 +1 validated p.D272N 1.000 204 0% 218 18.8% 14 35.7% possibly_damaging(0.805) tolerated(0.94) neutral(0.303) NULL SIDT2 51092 genome.wustl.edu 37 11 117059535 117059535 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040455.1 +1 validated p.R424H 1.000 150 0% 126 16.7% 15 13.3% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL SIDT2 51092 genome.wustl.edu 37 11 117064642 117064642 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040455.1 +1 validated p.A762V 0.998 157 0% 227 21.1% 32 18.7% probably_damaging(0.968) deleterious(0) deleterious(0.855) NULL TAGLN 6876 genome.wustl.edu 37 11 117075049 117075049 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001522.1 +1 reviewed p.G194R 1.000 125 0% 82 23.2% 414 0.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Calponin,PatternScan_CALPONIN_1 RNF214 257160 genome.wustl.edu 37 11 117115292 117115292 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077239.1 +1 validated p.K270 1.000 223 0% 190 18.9% 7 42.8% - - - NULL CEP164 22897 genome.wustl.edu 37 11 117252436 117252436 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014956.4 +1 validated p.H477Y 0.005 28 0% 20 25% 5 60% benign(0.154) deleterious(0.03) neutral(0.378) NULL DSCAML1 57453 genome.wustl.edu 37 11 117307942 117307942 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020693.2 -1 provisional p.T1599M 0.349 168 0% 184 11.4% 0 - possibly_damaging(0.836) tolerated(0.16) neutral(0.379) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III DSCAML1 57453 genome.wustl.edu 37 11 117651207 117651207 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020693.2 -1 provisional e2+1 1.000 137 0% 139 28.1% 2 100% - - - - FXYD2 486 genome.wustl.edu 37 11 117693277 117693277 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127489.1 -1 reviewed p.G61C 0.306 139 0% 81 23.5% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL IL10RA 3587 genome.wustl.edu 37 11 117870209 117870209 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001558.3 +1 reviewed p.S530 0.008 53 0% 47 14.9% 23 0% - - - NULL SCN4B 6330 genome.wustl.edu 37 11 118007723 118007723 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024527.1 -1 reviewed NULL 0.462 203 0% 172 18% 0 - - - - - UBE4A 9354 genome.wustl.edu 37 11 118244309 118244309 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004788.2 +1 reviewed p.T349N 1.000 422 0% 179 23.5% 5 40% benign(0.104) deleterious(0) neutral(0.453) HMMPfam_Ufd2P_core UBE4A 9354 genome.wustl.edu 37 11 118267107 118267107 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004788.2 +1 reviewed p.I1058 1.000 253 0% 143 17.5% 11 27.2% - - - HMMPfam_U-box,HMMSmart_SM00504 MLL 4297 genome.wustl.edu 37 11 118343153 118343153 + Missense_Mutation SNP C C T rs142138730 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005933.2 +1 validated p.R427W 1.000 124 0% 88 12.5% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MLL 4297 genome.wustl.edu 37 11 118362640 118362640 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005933.2 +1 validated p.R1664 0.986 116 0% 130 17.7% 0 - - - - HMMSmart_SM00297 MLL 4297 genome.wustl.edu 37 11 118371830 118371830 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005933.2 +1 validated p.R2093M 0.996 190 0% 95 31.6% 4 25% probably_damaging(0.995) - - NULL MLL 4297 genome.wustl.edu 37 11 118373690 118373690 + Silent SNP G G A rs192173056 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005933.2 +1 validated p.S2358 0.000 236 0.4% 156 21.8% 1 0% - - - NULL TMEM25 84866 genome.wustl.edu 37 11 118403784 118403784 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032780.3 +1 validated p.F179V 1.000 83 0% 117 23.9% 22 50% benign(0.282) deleterious(0.01) deleterious(0.492) superfamily_Immunoglobulin IFT46 56912 genome.wustl.edu 37 11 118422992 118422992 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020153.3 -1 validated p.T232M 0.862 573 0% 320 23.7% 36 58.3% probably_damaging(0.974) tolerated(0.11) deleterious(0.688) NULL PHLDB1 23187 genome.wustl.edu 37 11 118502929 118502929 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144758.1 +1 validated p.L765 0.997 145 0% 123 22% 5 0% - - - NULL PHLDB1 23187 genome.wustl.edu 37 11 118526593 118526593 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144758.1 +1 validated p.M1328I 1.000 315 0% 221 13.6% 0 - benign(0) tolerated(0.64) neutral(0.003) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like TREH 11181 genome.wustl.edu 37 11 118532113 118532113 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000264029 -1 known p.T241 0.000 289 0% 187 19.3% 0 - - - - HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases BCL9L 283149 genome.wustl.edu 37 11 118769565 118769565 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182557.2 -1 validated p.Q1353H 1.000 149 0% 117 20.5% 44 36.3% benign(0.019) deleterious(0.03) neutral(0.365) NULL BCL9L 283149 genome.wustl.edu 37 11 118779146 118779146 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182557.2 -1 validated p.A82V 1.000 122 0% 147 26.5% 13 53.8% benign(0.355) tolerated(0.61) neutral(0.117) NULL HYOU1 10525 genome.wustl.edu 37 11 118922262 118922262 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130991.1 -1 reviewed p.R472W 1.000 478 0% 407 26.3% 70 40% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL HYOU1 10525 genome.wustl.edu 37 11 118925975 118925975 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130991.1 -1 reviewed p.A114D 1.000 147 0.7% 177 18.1% 39 43.5% possibly_damaging(0.538) tolerated(0.63) neutral(0.185) HMMPfam_HSP70,superfamily_Actin-like ATPase domain NLRX1 79671 genome.wustl.edu 37 11 119042139 119042139 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024618.2 +1 reviewed p.R9S 1.000 278 0% 269 22.3% 8 37.5% possibly_damaging(0.934) deleterious(0) deleterious(0.825) NULL MCAM 4162 genome.wustl.edu 37 11 119181087 119181087 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006500.2 -1 validated p.S628N 0.818 132 0% 138 10.1% 27 3.7% benign(0) tolerated(1) - NULL MCAM 4162 genome.wustl.edu 37 11 119183044 119183044 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006500.2 -1 validated p.E319G 0.029 155 0% 223 24.2% 23 0% possibly_damaging(0.935) tolerated(0.21) neutral(0.424) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin MFRP 83552 genome.wustl.edu 37 11 119216802 119216802 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031433.2 -1 reviewed p.S75 0.002 76 0% 80 16.3% 0 - - - - NULL MFRP 83552 genome.wustl.edu 37 11 119217040 119217040 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031433.2 -1 reviewed p.P33 0.000 263 0% 194 16.5% 0 - - - - NULL PVRL1 5818 genome.wustl.edu 37 11 119549424 119549424 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002855.4 -1 reviewed p.G44D 1.000 27 0% 28 39.3% 9 77.7% probably_damaging(0.987) tolerated(0.06) deleterious(0.759) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin TRIM29 23650 genome.wustl.edu 37 11 119993763 119993763 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012101.3 -1 reviewed p.G445V 0.985 169 0% 142 23.9% 11 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TRIM29 23650 genome.wustl.edu 37 11 119996462 119996462 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012101.3 -1 reviewed p.V424I 0.936 175 0.6% 120 15% 16 50% benign(0.081) tolerated(0.18) neutral(0.062) NULL POU2F3 25833 genome.wustl.edu 37 11 120176370 120176370 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014352.2 +1 validated p.A215 0.797 121 0% 76 14.5% 0 - - - - HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains POU2F3 25833 genome.wustl.edu 37 11 120180245 120180245 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014352.2 +1 validated p.N340D 1.000 203 0% 76 15.8% 0 - benign(0.006) deleterious(0.01) neutral(0.406) HMMSmart_SM00389 ARHGEF12 23365 genome.wustl.edu 37 11 120318979 120318979 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015313.1 +1 reviewed p.K553N 1.000 370 0.3% 164 20.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS ARHGEF12 23365 genome.wustl.edu 37 11 120331410 120331410 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015313.1 +1 reviewed p.R853* 1.000 502 0% 224 20.5% 5 60% - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) GRIK4 2900 genome.wustl.edu 37 11 120686169 120686169 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014619.2 +1 reviewed p.I110 1.000 69 0% 44 18.2% 0 - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 GRIK4 2900 genome.wustl.edu 37 11 120690485 120690485 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014619.2 +1 reviewed p.P123S 1.000 303 0% 172 15.7% 0 - possibly_damaging(0.592) tolerated(0.67) neutral(0.207) HMMPfam_ANF_receptor,superfamily_SSF53822 GRIK4 2900 genome.wustl.edu 37 11 120690533 120690533 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014619.2 +1 reviewed p.L139I 1.000 235 0% 127 28.3% 1 0% possibly_damaging(0.84) deleterious(0.01) deleterious(0.727) HMMPfam_ANF_receptor,superfamily_SSF53822 GRIK4 2900 genome.wustl.edu 37 11 120745922 120745922 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014619.2 +1 reviewed p.I378 1.000 261 0% 140 21.4% 0 - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 GRIK4 2900 genome.wustl.edu 37 11 120852815 120852815 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014619.2 +1 reviewed p.G799D 1.000 739 0% 830 24.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Lig_chan TECTA 7007 genome.wustl.edu 37 11 120976544 120976544 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005422.2 +1 reviewed p.Q23 0.995 263 0% 90 14.4% 0 - - - - NULL TECTA 7007 genome.wustl.edu 37 11 121000384 121000384 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005422.2 +1 reviewed p.P802H 1.000 465 0% 312 19.9% 0 - benign(0.136) tolerated(0.14) neutral(0.261) HMMPfam_VWD,HMMSmart_SM00216 TECTA 7007 genome.wustl.edu 37 11 121031011 121031011 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005422.2 +1 reviewed p.C1619* 0.872 194 0% 209 24.9% 1 0% - - - HMMPfam_VWD,HMMSmart_SM00216 TECTA 7007 genome.wustl.edu 37 11 121061420 121061420 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005422.2 +1 reviewed p.N2125H 1.000 466 0% 329 26.1% 0 - possibly_damaging(0.598) deleterious(0.03) deleterious(0.572) superfamily_EGF/Laminin SORL1 6653 genome.wustl.edu 37 11 121340758 121340758 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003105.4 +1 reviewed p.A110T 1.000 157 0% 98 11.2% 1 0% probably_damaging(1) tolerated(0.15) deleterious(0.741) superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase SORL1 6653 genome.wustl.edu 37 11 121485685 121485685 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003105.4 +1 reviewed p.R1842H 0.319 98 0% 69 15.9% 13 30.7% possibly_damaging(0.782) tolerated(0.12) deleterious(0.553) superfamily_Fibronectin type III UBASH3B 84959 genome.wustl.edu 37 11 122650347 122650347 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032873.4 +1 validated p.A182V 1.000 134 0% 53 18.9% 3 33.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL C11orf63 79864 genome.wustl.edu 37 11 122805282 122805282 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024806.2 +1 validated p.S378Y 0.008 193 0% 52 21.2% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL HSPA8 3312 genome.wustl.edu 37 11 122928472 122928472 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006597.3 -1 reviewed p.S637 0.994 332 0% 243 16% 1291 38.8% - - - NULL HSPA8 3312 genome.wustl.edu 37 11 122931858 122931858 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006597.3 -1 reviewed p.V59I 1.000 333 0% 290 19.7% 514 41.8% benign(0.155) deleterious(0) neutral(0.458) HMMPfam_HSP70,superfamily_Actin-like ATPase domain SCN3B 55800 genome.wustl.edu 37 11 123513288 123513288 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040151.1 -1 reviewed p.S104F 1.000 71 0% 41 26.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin OR6M1 390261 genome.wustl.edu 37 11 123676994 123676994 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005325.1 -1 provisional p.R22* 0.001 180 0.6% 41 22% 0 - - - - superfamily_Family A G protein-coupled receptor-like TMEM225 338661 genome.wustl.edu 37 11 123755305 123755305 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013743.1 -1 provisional p.L74F 0.001 367 0% 62 24.2% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL OR4D5 219875 genome.wustl.edu 37 11 123810768 123810768 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001965.1 +1 provisional p.W149R 1.000 161 0.6% 74 16.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR6T1 219874 genome.wustl.edu 37 11 123814474 123814474 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005187.1 -1 provisional p.Q24 0.000 100 0% 42 16.7% 0 - - - - superfamily_SSF81321 OR10G8 219869 genome.wustl.edu 37 11 123900825 123900825 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004464.1 +1 provisional p.P166T 0.847 386 0% 161 14.3% 0 - possibly_damaging(0.736) deleterious(0.02) deleterious(0.652) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like VWA5A 4013 genome.wustl.edu 37 11 123989240 123989240 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130142.1 +1 validated p.G157E 0.029 167 0% 116 13.8% 26 34.6% benign(0.013) tolerated(1) neutral(0.001) NULL VWA5A 4013 genome.wustl.edu 37 11 124007322 124007322 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130142.1 +1 validated p.L522 0.068 238 0% 176 22.7% 58 53.4% - - - NULL OR8G2 26492 genome.wustl.edu 37 11 124095829 124095829 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007249.1 +1 provisional p.L144 0.877 348 0% 264 20.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR8D1 283159 genome.wustl.edu 37 11 124180652 124180652 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002917.1 -1 provisional p.E4A 0.000 79 0% 27 25.9% 0 - benign(0.001) tolerated(0.53) neutral(0.007) superfamily_Family A G protein-coupled receptor-like OR8B3 390271 genome.wustl.edu 37 11 124266551 124266551 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005467.1 -1 provisional p.G233* 0.167 339 0% 167 16.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR8B8 26493 genome.wustl.edu 37 11 124310774 124310774 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012378.1 -1 provisional p.D70N 0.999 442 0% 398 20.6% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MSANTD2 79684 genome.wustl.edu 37 11 124637456 124637456 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024631.2 -1 validated p.E380D 0.997 111 0% 148 18.2% 8 75% benign(0) deleterious(0) neutral(0.445) NULL ROBO3 64221 genome.wustl.edu 37 11 124740064 124740064 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022370.3 +1 reviewed p.R257H 1.000 283 0% 291 17.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Immunoglobulin ROBO3 64221 genome.wustl.edu 37 11 124742801 124742801 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022370.3 +1 reviewed p.P451L 1.000 64 0% 94 28.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_I-set,superfamily_Immunoglobulin ROBO3 64221 genome.wustl.edu 37 11 124745514 124745514 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022370.3 +1 reviewed p.S785I 1.000 48 0% 54 18.5% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ROBO4 54538 genome.wustl.edu 37 11 124756449 124756449 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019055.5 -1 validated p.A902D 0.016 71 0% 43 11.6% 8 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL SLC37A2 219855 genome.wustl.edu 37 11 124950676 124950676 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198277.2 +1 validated p.H232Y 0.955 107 0% 101 20.8% 1 0% benign(0) tolerated(0.11) neutral(0.272) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter FEZ1 9638 genome.wustl.edu 37 11 125351530 125351530 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005103.3 -1 reviewed e2-1 1.000 248 0.4% 118 21.2% 0 - - - - - CHEK1 1111 genome.wustl.edu 37 11 125503112 125503112 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114121.1 +1 validated p.R160H 0.998 364 0% 284 20.8% 15 33.3% possibly_damaging(0.646) deleterious(0.04) deleterious(0.576) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CHEK1 1111 genome.wustl.edu 37 11 125514004 125514004 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114121.1 +1 validated p.Y314 0.995 267 0% 248 23.4% 26 46.1% - - - superfamily_Protein kinase-like (PK-like) ACRV1 56 genome.wustl.edu 37 11 125548003 125548003 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001612.4 -1 reviewed p.A81V 0.003 170 0.6% 41 17.1% 0 - benign(0.001) tolerated(0.23) neutral(0.042) NULL PATE1 160065 genome.wustl.edu 37 11 125618578 125618578 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138294.2 +1 validated p.V111L 0.142 380 0% 102 23.5% 0 - possibly_damaging(0.892) - - NULL PATE4 399968 genome.wustl.edu 37 11 125707872 125707872 + Nonsense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144874.1 +1 validated p.Y56* 0.001 228 0% 52 19.2% 0 - - - - NULL PATE4 399968 genome.wustl.edu 37 11 125708245 125708245 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144874.1 +1 validated p.R74W 0.000 187 0% 64 15.6% 0 - benign(0.293) deleterious(0.01) deleterious(0.496) NULL PUS3 83480 genome.wustl.edu 37 11 125766161 125766161 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031307.3 -1 validated p.D7Y 0.466 516 0% 537 21.2% 5 20% benign(0) tolerated(0.1) neutral(0.286) NULL HYLS1 219844 genome.wustl.edu 37 11 125769942 125769942 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134793.1 +1 reviewed p.R227C 0.006 219 0% 223 27.4% 9 33.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL DDX25 29118 genome.wustl.edu 37 11 125778159 125778159 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013264.3 +1 reviewed p.A127V 1.000 226 0% 225 17.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases DDX25 29118 genome.wustl.edu 37 11 125787060 125787060 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013264.3 +1 reviewed p.L318M 0.016 189 0% 114 20.2% 0 - benign(0.005) tolerated(0.1) neutral(0.286) superfamily_P-loop containing nucleoside triphosphate hydrolases CDON 50937 genome.wustl.edu 37 11 125875677 125875677 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016952.4 -1 validated p.A610T 1.000 152 0% 50 10% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CDON 50937 genome.wustl.edu 37 11 125887118 125887118 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016952.4 -1 validated p.G265* 0.017 213 0% 76 27.6% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin DCPS 28960 genome.wustl.edu 37 11 126213248 126213248 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014026.3 +1 validated p.R228I 0.259 116 0% 148 24.3% 69 37.6% possibly_damaging(0.686) deleterious(0) deleterious(0.690) HMMPfam_DcpS,superfamily_His_triad-like_motif KIRREL3 84623 genome.wustl.edu 37 11 126294649 126294649 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032531.3 -1 reviewed p.S721 1.000 171 0% 146 15.1% 0 - - - - NULL KIRREL3 84623 genome.wustl.edu 37 11 126295538 126295538 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032531.3 -1 reviewed p.L630M 1.000 189 0% 171 22.2% 0 - possibly_damaging(0.818) tolerated(0.61) neutral(0.313) NULL KIRREL3 84623 genome.wustl.edu 37 11 126314948 126314948 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032531.3 -1 reviewed p.A393V 1.000 79 0% 73 16.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin FLI1 2313 genome.wustl.edu 37 11 128680466 128680466 + Silent SNP C C T rs61733405 byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002017.3 +1 validated p.P314 0.997 89 1.1% 72 20.8% 9 0% - - - "HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain" KCNJ5 3762 genome.wustl.edu 37 11 128781408 128781408 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000890.3 +1 reviewed p.T80 0.185 177 0% 123 29.3% 2 50% - - - HMMPfam_IRK,superfamily_SSF81324 ARHGAP32 9743 genome.wustl.edu 37 11 128840793 128840793 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142685.1 -1 validated p.A1425T 0.785 133 0% 114 19.3% 1 0% probably_damaging(0.999) tolerated(0.29) deleterious(0.519) NULL BARX2 8538 genome.wustl.edu 37 11 129312796 129312796 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003658.4 +1 reviewed p.R185 1.000 344 0% 188 19.7% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 NFRKB 4798 genome.wustl.edu 37 11 129762640 129762640 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006165.3 -1 validated p.R48S 0.992 170 0% 251 25.5% 2 0% probably_damaging(0.961) tolerated(0.05) deleterious(0.750) NULL PRDM10 56980 genome.wustl.edu 37 11 129793283 129793283 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020228.2 -1 reviewed p.R636C 1.000 193 0% 124 22.6% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PRDM10 56980 genome.wustl.edu 37 11 129800985 129800985 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020228.2 -1 reviewed p.Q486* 0.911 385 0% 350 25.1% 2 0% - - - NULL APLP2 334 genome.wustl.edu 37 11 129991646 129991646 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001642.2 +1 validated p.E218D 0.413 174 0% 146 23.3% 157 1.2% possibly_damaging(0.476) tolerated(0.43) neutral(0.171) NULL APLP2 334 genome.wustl.edu 37 11 129999090 129999090 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001642.2 +1 validated p.D482N 1.000 30 0% 33 27.3% 254 4.3% probably_damaging(0.975) tolerated(0.42) neutral(0.431) superfamily_CAPPD an extracellular domain of amyloid beta A4 protein APLP2 334 genome.wustl.edu 37 11 130010379 130010379 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001642.2 +1 validated e15+1 1.000 541 0% 251 18.7% 0 - - - - - ST14 6768 genome.wustl.edu 37 11 130068906 130068906 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021978.3 +1 reviewed p.G583 0.940 193 0% 199 16.1% 236 48.3% - - - HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich ST14 6768 genome.wustl.edu 37 11 130078384 130078384 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021978.3 +1 reviewed p.R692C 0.830 93 0% 76 28.9% 325 49.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys NTM 50863 genome.wustl.edu 37 11 132177621 132177621 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144058.1 +1 reviewed p.Q189* 1.000 182 0% 62 21% 1 0% - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 NTM 50863 genome.wustl.edu 37 11 132184544 132184544 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144058.1 +1 reviewed p.T294N 1.000 217 0% 67 17.9% 1 0% probably_damaging(0.998) tolerated(0.12) deleterious(0.735) HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 IGSF9B 22997 genome.wustl.edu 37 11 133790867 133790867 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014987.1 -1 validated p.S918I 1.000 45 0% 80 25% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL IGSF9B 22997 genome.wustl.edu 37 11 133792071 133792071 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014987.1 -1 validated e17+1 1.000 246 0.4% 257 24.5% 0 - - - - - IGSF9B 22997 genome.wustl.edu 37 11 133795671 133795671 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014987.1 -1 validated p.G666V 1.000 109 0% 95 14.7% 1 100% benign(0.003) tolerated(0.13) neutral(0.253) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like IGSF9B 22997 genome.wustl.edu 37 11 133799589 133799589 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014987.1 -1 validated p.G536 0.999 184 0% 247 22.3% 1 0% - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like JAM3 83700 genome.wustl.edu 37 11 134019073 134019073 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032801.3 +1 reviewed p.I355 1.000 271 0% 186 16.7% 7 0% - - - NULL NCAPD3 23310 genome.wustl.edu 37 11 134037890 134037890 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015261.2 -1 validated e27+1 1.000 275 0% 150 26.7% 1 100% - - - - NCAPD3 23310 genome.wustl.edu 37 11 134079364 134079364 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015261.2 -1 validated p.E192A 0.985 106 0% 61 13.1% 1 0% possibly_damaging(0.808) tolerated(0.14) deleterious(0.553) superfamily_ARM-type_fold VPS26B 112936 genome.wustl.edu 37 11 134114838 134114838 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052875.3 +1 validated p.S243Y 1.000 61 0% 71 29.6% 57 33.3% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Vps26 ACAD8 27034 genome.wustl.edu 37 11 134128475 134128475 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014384.2 +1 reviewed p.L149 1.000 325 0% 261 18.4% 21 23.8% - - - HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM ACAD8 27034 genome.wustl.edu 37 11 134128972 134128972 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014384.2 +1 reviewed p.G187 1.000 197 0% 188 11.2% 22 22.7% - - - HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM GLB1L3 112937 genome.wustl.edu 37 11 134163065 134163065 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080407.2 +1 validated p.L280F 0.000 422 0% 371 22.1% 0 - benign(0.002) tolerated(0.48) neutral(0.011) HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases GLB1L3 112937 genome.wustl.edu 37 11 134181034 134181034 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080407.2 +1 validated p.P419 0.004 121 0% 95 24.2% 0 - - - - NULL GLB1L2 89944 genome.wustl.edu 37 11 134217261 134217261 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138342.3 +1 validated p.Y164 0.999 280 0% 323 23.5% 6 0% - - - HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat GLB1L2 89944 genome.wustl.edu 37 11 134244871 134244871 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138342.3 +1 validated p.I610 0.486 101 0% 125 22.4% 7 14.2% - - - NULL SLC6A12 6539 genome.wustl.edu 37 12 319210 319210 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122847.1 -1 validated e1-1 0.020 52 0% 52 17.3% 0 - - - - - KDM5A 5927 genome.wustl.edu 37 12 427507 427507 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042603.1 -1 reviewed p.L888F 1.000 275 0% 90 22.2% 7 14.2% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_PLU-1 KDM5A 5927 genome.wustl.edu 37 12 438086 438086 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042603.1 -1 reviewed p.D628G 1.000 223 0% 172 34.3% 6 33.3% benign(0.354) tolerated(0.22) neutral(0.154) NULL B4GALNT3 283358 genome.wustl.edu 37 12 661660 661660 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173593.3 +1 validated p.I412 0.466 49 0% 47 29.8% 6 33.3% - - - NULL WNK1 65125 genome.wustl.edu 37 12 994868 994868 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018979.3 +1 reviewed p.T1633I 0.039 320 0% 122 22.1% 13 23% unknown(0) tolerated(0.25) - NULL WNK1 65125 genome.wustl.edu 37 12 1009702 1009702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018979.3 +1 reviewed p.P2170H 1.000 217 0% 84 10.7% 42 9.5% unknown(0) deleterious(0) - NULL ERC1 23085 genome.wustl.edu 37 12 1219425 1219425 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178040.2 +1 reviewed p.S410L 1.000 416 0.2% 172 22.7% 2 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Cast ERC1 23085 genome.wustl.edu 37 12 1250888 1250888 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178040.2 +1 reviewed p.E558* 1.000 456 0% 162 23.5% 1 0% - - - superfamily_Prefoldin,HMMPfam_Cast CACNA2D4 93589 genome.wustl.edu 37 12 2017177 2017177 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172364.4 -1 reviewed p.I171 1.000 54 0% 54 22.2% 0 - - - - HMMPfam_VWA_N CACNA1C 775 genome.wustl.edu 37 12 2566783 2566783 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199460.2 +1 reviewed p.A223V 0.830 213 0% 136 20.6% 1 0% probably_damaging(0.985) tolerated(0.58) neutral(0.437) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1C 775 genome.wustl.edu 37 12 2676847 2676847 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199460.2 +1 reviewed p.F594 1.000 72 0% 56 23.2% 1 0% - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1C 775 genome.wustl.edu 37 12 2694639 2694639 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199460.2 +1 reviewed p.G813R 1.000 44 0% 74 25.7% 0 - probably_damaging(0.989) tolerated(0.13) deleterious(0.692) NULL CACNA1C 775 genome.wustl.edu 37 12 2714302 2714302 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199460.2 +1 reviewed p.L1026M 1.000 119 0% 97 20.6% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ITFG2 55846 genome.wustl.edu 37 12 2927452 2927452 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419778 +1 known p.M1I 0.001 248 0% 193 23.8% 0 - benign(0.002) deleterious(0.03) neutral(0.364) NULL TSPAN9 10867 genome.wustl.edu 37 12 3390926 3390926 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006675.4 +1 reviewed p.W197* 1.000 154 0% 128 10.9% 14 0% - - - superfamily_Tetraspanin,HMMPfam_Tetraspannin PRMT8 56341 genome.wustl.edu 37 12 3702307 3702307 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019854.3 +1 validated p.L382M 1.000 228 0% 106 11.3% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) superfamily_S-adenosyl-L-methionine-dependent methyltransferases C12orf4 57102 genome.wustl.edu 37 12 4599729 4599729 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020374.2 -1 predicted p.D509Y 1.000 298 0% 87 18.4% 14 28.5% probably_damaging(0.959) deleterious(0.03) deleterious(0.767) HMMPfam_DUF2362 C12orf4 57102 genome.wustl.edu 37 12 4614483 4614483 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020374.2 -1 predicted p.N409T 1.000 371 0% 358 26.5% 6 33.3% benign(0.35) deleterious(0) deleterious(0.555) HMMPfam_DUF2362 C12orf4 57102 genome.wustl.edu 37 12 4627417 4627417 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020374.2 -1 predicted p.A280 1.000 154 0% 81 28.4% 9 44.4% unknown(0) tolerated(0.06) - HMMPfam_DUF2362 C12orf4 57102 genome.wustl.edu 37 12 4643428 4643428 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020374.2 -1 predicted p.S73 0.005 258 0% 160 15% 5 80% - - - HMMPfam_DUF2362 DYRK4 8798 genome.wustl.edu 37 12 4708229 4708229 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003845.1 +1 provisional p.F199C 1.000 365 0% 198 21.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase DYRK4 8798 genome.wustl.edu 37 12 4722897 4722897 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003845.1 +1 provisional p.N514S 0.018 115 0% 78 19.2% 84 46.4% benign(0.023) tolerated(0.37) neutral(0.020) NULL AKAP3 10566 genome.wustl.edu 37 12 4735811 4735811 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006422.2 -1 reviewed p.A753T 0.000 315 0% 181 27.1% 5 40% benign(0) tolerated(0.73) neutral(0.002) HMMPfam_AKAP_110,HMMSmart_SM00807 AKAP3 10566 genome.wustl.edu 37 12 4736167 4736167 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006422.2 -1 reviewed p.A634V 0.002 72 0% 37 10.8% 2 100% benign(0) tolerated(0.05) neutral(0.345) HMMPfam_AKAP_110,HMMSmart_SM00807 AKAP3 10566 genome.wustl.edu 37 12 4736387 4736387 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006422.2 -1 reviewed p.A561T 0.000 106 0% 57 19.3% 1 100% benign(0) tolerated(1) - HMMPfam_AKAP_110,HMMSmart_SM00807 AKAP3 10566 genome.wustl.edu 37 12 4737603 4737603 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006422.2 -1 reviewed p.V155 0.057 378 0.3% 248 28.2% 0 - - - - HMMSmart_SM00807 NDUFA9 4704 genome.wustl.edu 37 12 4763595 4763595 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005002.4 +1 reviewed p.G63* 1.000 385 0% 146 26% 110 3.6% - - - HMMPfam_Epimerase,superfamily_NAD(P)-bd GALNT8 26290 genome.wustl.edu 37 12 4854641 4854641 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017417.1 +1 reviewed p.V303M 0.005 234 0% 55 12.7% 0 - possibly_damaging(0.783) deleterious(0) deleterious(0.738) HMMPfam_Glycos_transf_2,superfamily_SSF53448 GALNT8 26290 genome.wustl.edu 37 12 4854727 4854727 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017417.1 +1 reviewed p.L331 0.062 240 0% 77 11.7% 0 - - - - HMMPfam_Glycos_transf_2,superfamily_SSF53448 KCNA6 3742 genome.wustl.edu 37 12 4920430 4920430 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002235.3 +1 reviewed p.S408N 1.000 268 0% 304 20.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Ion_trans,superfamily_SSF81324 KCNA5 3741 genome.wustl.edu 37 12 5154785 5154785 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002234.2 +1 reviewed p.V491A 0.387 192 0% 200 14.5% 0 - benign(0.235) tolerated(0.2) neutral(0.073) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels KCNA5 3741 genome.wustl.edu 37 12 5154914 5154914 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002234.2 +1 reviewed p.V534G 0.000 190 0% 198 24.2% 0 - benign(0.025) tolerated(0.2) neutral(0.050) NULL ANO2 57101 genome.wustl.edu 37 12 5744396 5744396 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020373.2 -1 validated p.A580S 0.999 217 0% 188 26.6% 0 - probably_damaging(0.986) deleterious(0.01) deleterious(0.840) NULL ANO2 57101 genome.wustl.edu 37 12 5842032 5842032 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020373.2 -1 validated p.Q478H 1.000 551 0% 229 18.3% 0 - possibly_damaging(0.859) deleterious(0.03) deleterious(0.697) NULL VWF 7450 genome.wustl.edu 37 12 6120886 6120886 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000552.3 -1 reviewed p.K1913 0.997 70 0% 52 25% 26 0% - - - NULL VWF 7450 genome.wustl.edu 37 12 6125704 6125704 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000552.3 -1 reviewed p.R1763 0.229 113 0% 87 19.5% 27 0% - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like VWF 7450 genome.wustl.edu 37 12 6127628 6127628 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000552.3 -1 reviewed p.Q1652H 0.648 40 0% 38 28.9% 20 0% benign(0) tolerated(0.15) neutral(0.241) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like PLEKHG6 55200 genome.wustl.edu 37 12 6425047 6425047 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144856.1 +1 validated p.G190S 0.784 48 0% 65 23.1% 4 50% probably_damaging(0.995) tolerated(0.36) deleterious(0.478) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) CD27 939 genome.wustl.edu 37 12 6554653 6554653 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001242.4 +1 reviewed p.P67L 0.014 149 0% 93 17.2% 74 1.3% benign(0.009) tolerated(0.17) neutral(0.059) HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like MRPL51 51258 genome.wustl.edu 37 12 6601586 6601586 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016497.3 -1 reviewed p.L80I 1.000 642 0% 727 26% 381 45.6% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_MRP-L51 NCAPD2 9918 genome.wustl.edu 37 12 6604312 6604312 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014865.3 +1 validated p.E16D 0.788 511 0% 554 21.5% 14 71.4% possibly_damaging(0.787) tolerated(1) neutral(0.294) NULL NCAPD2 9918 genome.wustl.edu 37 12 6634800 6634800 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014865.3 +1 validated p.L756M 1.000 226 0% 198 19.7% 44 50% probably_damaging(1) tolerated(0.12) deleterious(0.760) superfamily_ARM repeat IFFO1 25900 genome.wustl.edu 37 12 6650772 6650772 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039670.1 -1 validated p.H498Y 1.000 123 0% 134 26.9% 12 0% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) NULL IFFO1 25900 genome.wustl.edu 37 12 6657977 6657977 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000416019 -1 known p.G96V 1.000 32 0% 34 20.6% 7 0% - - - NULL IFFO1 25900 genome.wustl.edu 37 12 6658970 6658970 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000416019 -1 known p.A73V 0.533 120 0% 125 28% 9 0% - - - NULL NOP2 4839 genome.wustl.edu 37 12 6666637 6666637 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033714.1 -1 validated p.S650Y 0.018 585 0.3% 658 24.5% 87 34.4% possibly_damaging(0.805) deleterious(0.04) deleterious(0.652) NULL NOP2 4839 genome.wustl.edu 37 12 6669658 6669658 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033714.1 -1 validated p.T501 0.603 94 0% 102 11.8% 66 13.6% - - - HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335 CHD4 1108 genome.wustl.edu 37 12 6690253 6690253 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001273.2 -1 reviewed p.E1622D 0.988 500 0% 423 18.9% 112 32.1% benign(0.133) tolerated(0.33) neutral(0.035) NULL CHD4 1108 genome.wustl.edu 37 12 6691351 6691351 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001273.2 -1 reviewed p.R1489 0.997 160 0% 123 16.3% 155 39.3% - - - HMMPfam_DUF1086 CHD4 1108 genome.wustl.edu 37 12 6696909 6696909 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001273.2 -1 reviewed p.E1224D 1.000 181 0% 125 23.2% 75 38.6% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) superfamily_P-loop containing nucleoside triphosphate hydrolases CHD4 1108 genome.wustl.edu 37 12 6710471 6710471 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001273.2 -1 reviewed p.K261N 1.000 124 0% 119 16.8% 26 23% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL CHD4 1108 genome.wustl.edu 37 12 6711613 6711613 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001273.2 -1 reviewed p.L51I 1.000 847 0% 881 11.6% 9 33.3% benign(0.35) tolerated(0.36) neutral(0.131) NULL LPAR5 57121 genome.wustl.edu 37 12 6729440 6729440 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142961.1 -1 reviewed p.T325 0.000 26 0% 11 36.4% 0 - - - - superfamily_Family A G protein-coupled receptor-like ACRBP 84519 genome.wustl.edu 37 12 6754473 6754473 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032489.2 -1 reviewed p.L130F 0.568 581 0% 583 23% 1 100% unknown(0) - - HMMPfam_PBP_sp32 C12orf53 196500 genome.wustl.edu 37 12 6806744 6806744 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153685.2 -1 predicted p.R78W 0.719 48 0% 38 21.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CDCA3 83461 genome.wustl.edu 37 12 6958492 6958492 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031299.4 -1 validated p.R216* 0.180 537 0% 448 25.2% 43 18.6% - - - NULL CDCA3 83461 genome.wustl.edu 37 12 6958584 6958584 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031299.4 -1 validated p.R185H 0.000 523 0% 431 20.4% 34 14.7% benign(0.005) tolerated(0.32) neutral(0.024) NULL USP5 8078 genome.wustl.edu 37 12 6970686 6970686 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098536.1 +1 validated p.Q526H 1.000 65 0% 56 37.5% 70 44.2% benign(0.133) tolerated(0.08) neutral(0.311) HMMPfam_UCH,superfamily_Cysteine proteinases USP5 8078 genome.wustl.edu 37 12 6973293 6973293 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098536.1 +1 validated p.D726E 1.000 203 0% 176 24.4% 80 42.5% benign(0) tolerated(1) - HMMPfam_UBA,HMMPfam_UCH,superfamily_UBA-like,HMMSmart_SM00165,superfamily_Cysteine proteinases ATN1 1822 genome.wustl.edu 37 12 7044986 7044986 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007026.1 +1 reviewed p.H186Y 0.945 212 0% 219 30.1% 37 43.2% possibly_damaging(0.873) tolerated(0.39) neutral(0.355) HMMPfam_Atrophin-1 PTPN6 5777 genome.wustl.edu 37 12 7060792 7060792 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080549.3 +1 reviewed p.S10N 0.999 44 0% 49 20.4% 28 25% possibly_damaging(0.687) tolerated(0.15) deleterious(0.486) HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain PHB2 11331 genome.wustl.edu 37 12 7076360 7076360 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144831.1 -1 validated p.R255* 1.000 274 0% 191 14.7% 385 4.6% - - - NULL PHB2 11331 genome.wustl.edu 37 12 7077628 7077628 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144831.1 -1 validated p.L141 1.000 197 0% 143 18.2% 205 3.9% - - - HMMPfam_Band_7,HMMSmart_SM00244 LPCAT3 10162 genome.wustl.edu 37 12 7086807 7086807 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005768.5 -1 validated p.L381M 1.000 238 0% 145 17.9% 64 40.6% possibly_damaging(0.644) tolerated(0.05) deleterious(0.571) HMMPfam_MBOAT C1S 716 genome.wustl.edu 37 12 7175770 7175770 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001734.3 +1 reviewed p.H402 0.026 477 0% 256 25.4% 162 20.3% - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module C1S 716 genome.wustl.edu 37 12 7177214 7177214 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001734.3 +1 reviewed p.S442 0.000 116 0% 63 15.9% 157 2.5% - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys C1RL 51279 genome.wustl.edu 37 12 7254516 7254516 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016546.2 -1 validated p.F156 1.000 103 0% 60 18.3% 34 38.2% unknown(0) - - HMMSmart_CUB,superfamily_CUB CLSTN3 9746 genome.wustl.edu 37 12 7302240 7302240 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014718.3 +1 validated p.Q732H 1.000 140 0.7% 119 11.8% 34 2.9% benign(0.106) tolerated(0.41) neutral(0.023) NULL ACSM4 341392 genome.wustl.edu 37 12 7459137 7459137 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080454.1 +1 provisional p.E70 0.994 161 0% 51 25.5% 0 - - - - superfamily_SSF56801 CD163L1 283316 genome.wustl.edu 37 12 7531666 7531666 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174941.4 -1 reviewed p.T760N 0.580 76 0% 41 26.8% 0 - possibly_damaging(0.862) tolerated(0.52) neutral(0.342) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like APOBEC1 339 genome.wustl.edu 37 12 7802162 7802162 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001644.3 -1 reviewed p.P231H 0.001 614 0.2% 543 20.6% 0 - possibly_damaging(0.592) deleterious(0.03) deleterious(0.569) NULL GDF3 9573 genome.wustl.edu 37 12 7842857 7842857 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020634.1 -1 reviewed p.L238I 1.000 179 0% 113 24.8% 0 - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) NULL SLC2A3 6515 genome.wustl.edu 37 12 8078525 8078525 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006931.2 -1 validated p.G294E 0.953 476 0% 339 26% 7 0% benign(0.057) tolerated(0.43) neutral(0.017) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter SLC2A3 6515 genome.wustl.edu 37 12 8082281 8082281 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006931.2 -1 validated p.A287V 1.000 400 0% 176 23.3% 7 0% probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter CLEC4E 26253 genome.wustl.edu 37 12 8687340 8687340 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014358.2 -1 reviewed p.S185Y 0.844 354 0% 283 13.8% 27 0% benign(0.258) tolerated(1) neutral(0.027) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like MFAP5 8076 genome.wustl.edu 37 12 8802116 8802116 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003480.2 -1 reviewed p.K130N 0.999 853 0% 510 21.8% 56 51.7% probably_damaging(0.999) tolerated(0.07) deleterious(0.809) HMMPfam_MAGP RIMKLB 57494 genome.wustl.edu 37 12 8906555 8906555 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020734.2 +1 validated p.A188V 1.000 439 0% 106 20.8% 41 53.6% benign(0.001) tolerated(0.24) neutral(0.037) HMMPfam_RimK,superfamily_Glutathione synthetase ATP-binding domain-like A2ML1 144568 genome.wustl.edu 37 12 8975886 8975886 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144670.3 +1 validated p.E57D 1.000 277 0% 166 22.3% 1 0% possibly_damaging(0.916) tolerated(0.33) neutral(0.391) HMMPfam_A2M_N A2ML1 144568 genome.wustl.edu 37 12 8995748 8995748 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144670.3 +1 validated p.D423Y 0.964 181 0% 115 14.8% 0 - probably_damaging(0.955) deleterious(0.03) deleterious(0.763) NULL A2ML1 144568 genome.wustl.edu 37 12 9020488 9020488 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144670.3 +1 validated p.Y1256 0.006 325 0.3% 128 23.4% 0 - - - - superfamily_Terpenoid cyclases/Protein prenyltransferases PHC1 1911 genome.wustl.edu 37 12 9087075 9087075 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004426.2 +1 reviewed e9+1 1.000 86 0% 66 18.2% 2 100% - - - - A2M 2 genome.wustl.edu 37 12 9225262 9225262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000014.4 -1 reviewed p.C1321Y 1.000 347 0.3% 268 20.5% 307 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL A2M 2 genome.wustl.edu 37 12 9243004 9243004 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000014.4 -1 reviewed p.I848 1.000 335 0.6% 300 26% 109 0% - - - NULL A2M 2 genome.wustl.edu 37 12 9252092 9252092 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000014.4 -1 reviewed p.P529H 0.000 237 0% 247 21.1% 103 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_A2M_N_2 DDX11L8 100302090 genome.wustl.edu 37 12 9451404 9451404 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000341155 +1 known p.S276N 0.093 572 0% 477 13.4% 2 0% - - - HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases LOC100286917 100286917 genome.wustl.edu 37 12 9571259 9571259 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343147.1 +1 model p.V113A 0.000 463 0% 320 9.7% 16 6.2% - - - NULL DDX12P 440081 genome.wustl.edu 37 12 9582181 9582181 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000432996 -1 known p.L422 1.000 419 0% 381 8.1% 2 0% - - - HMMSmart_SM00488 CD69 969 genome.wustl.edu 37 12 9907629 9907629 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_026672.1 -1 reviewed NULL 0.000 46 0% 38 21.1% 0 - - - - - CLEC12A 160364 genome.wustl.edu 37 12 10131965 10131965 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138337.5 +1 reviewed p.K74T 0.048 161 0% 44 20.5% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CLEC7A 64581 genome.wustl.edu 37 12 10280409 10280409 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_197947.2 -1 reviewed p.A47T 0.902 231 0% 224 18.8% 11 0% benign(0.1) tolerated(0.17) neutral(0.067) HMMPfam_Ly49 GABARAPL1 23710 genome.wustl.edu 37 12 10373129 10373129 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031412.2 +1 validated p.T87I 1.000 381 0% 337 24.9% 32 18.7% probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like GABARAPL1 23710 genome.wustl.edu 37 12 10374426 10374426 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031412.2 +1 validated p.S110N 1.000 414 0% 378 21.4% 21 14.2% possibly_damaging(0.454) deleterious(0) deleterious(0.593) HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like PRR4 11272 genome.wustl.edu 37 12 11000974 11000974 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098538.1 -1 validated p.P46S 0.000 312 0% 118 20.3% 3 66.6% possibly_damaging(0.949) - - NULL PRB2 653247 genome.wustl.edu 37 12 11545836 11545836 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006248.3 -1 validated p.Q392H 0.001 340 0.3% 155 15.5% 0 - unknown(0) tolerated(0.16) - NULL ETV6 2120 genome.wustl.edu 37 12 11803078 11803078 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001987.4 +1 reviewed p.A6V 1.000 142 0% 184 27.2% 8 75% benign(0) deleterious(0.01) neutral(0.406) NULL ETV6 2120 genome.wustl.edu 37 12 12006453 12006453 + Missense_Mutation SNP C C T rs146150601 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001987.4 +1 reviewed p.H141Y 1.000 534 0% 280 21.1% 7 14.2% possibly_damaging(0.838) deleterious(0.03) deleterious(0.684) NULL LRP6 4040 genome.wustl.edu 37 12 12332866 12332866 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002336.2 -1 reviewed p.A475T 1.000 294 0% 142 19.7% 1 0% benign(0) tolerated(0.12) neutral(0.261) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain LOC100288143 100288143 genome.wustl.edu 37 12 12618762 12618762 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343156.1 -1 model p.V7 0.097 12 0% 10 60% 22 22.7% - - - NULL GPRC5D 55507 genome.wustl.edu 37 12 13102585 13102585 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018654.1 -1 reviewed p.A245D 1.000 236 0% 69 18.8% 0 - benign(0.21) deleterious(0) neutral(0.465) HMMPfam_7tm_3 HEBP1 50865 genome.wustl.edu 37 12 13153044 13153044 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015987.3 -1 reviewed p.L2S 1.000 23 0% 40 15% 13 38.4% probably_damaging(0.975) deleterious(0.01) deleterious(0.823) NULL GRIN2B 2904 genome.wustl.edu 37 12 13716898 13716898 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000834.3 -1 reviewed p.R1092W 1.000 93 0% 88 15.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NMDAR2_C GRIN2B 2904 genome.wustl.edu 37 12 13768199 13768199 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000834.3 -1 reviewed p.V501 1.000 204 0% 96 27.1% 0 - - - - HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850 ATF7IP 55729 genome.wustl.edu 37 12 14613677 14613677 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018179.3 +1 validated p.G803W 1.000 317 0% 108 22.2% 12 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GUCY2C 2984 genome.wustl.edu 37 12 14834401 14834401 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004963.3 -1 validated p.A208T 1.000 339 0% 66 18.2% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I WBP11 51729 genome.wustl.edu 37 12 14946666 14946666 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016312.2 -1 reviewed p.S304 1.000 536 0% 386 24.4% 92 43.4% unknown(0) - - NULL C12orf60 144608 genome.wustl.edu 37 12 14976169 14976169 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175874.3 +1 validated p.K100N 0.059 244 0% 109 18.3% 9 11.1% benign(0.048) tolerated(0.24) neutral(0.041) NULL ART4 420 genome.wustl.edu 37 12 14993967 14993967 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021071.2 -1 reviewed p.A89S 0.000 186 0% 86 10.5% 0 - benign(0) tolerated(0.68) neutral(0.002) HMMPfam_ART,superfamily_ADP-ribosylation MGP 4256 genome.wustl.edu 37 12 15035143 15035143 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000900.2 -1 validated p.R81H 1.000 235 0% 55 25.5% 208 0% probably_damaging(0.998) tolerated(0.18) deleterious(0.530) HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA PTPRO 5800 genome.wustl.edu 37 12 15679170 15679170 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030667.1 +1 reviewed p.T713I 1.000 201 0% 50 18% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL PTPRO 5800 genome.wustl.edu 37 12 15704516 15704516 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030667.1 +1 reviewed p.I823 1.000 564 0% 187 26.2% 2 0% - - - NULL EPS8 2059 genome.wustl.edu 37 12 15823789 15823789 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004447.5 -1 reviewed e3+1 1.000 315 0% 174 23.6% 0 - - - - - STRAP 11171 genome.wustl.edu 37 12 16055879 16055879 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007178.3 +1 validated p.C340 1.000 179 0% 169 23.1% 189 42.8% - - - NULL DERA 51071 genome.wustl.edu 37 12 16135350 16135350 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015954.2 +1 validated p.S206I 1.000 447 0% 321 14.3% 32 28.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DeoC,superfamily_SSF51569 SLC15A5 729025 genome.wustl.edu 37 12 16425577 16425577 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000344941 -1 known p.G168C 1.000 303 0% 75 24% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PTR2 PIK3C2G 5288 genome.wustl.edu 37 12 18649004 18649004 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004570.4 +1 reviewed p.S893 0.961 561 0.2% 778 12.5% 0 - - - - superfamily_Protein kinase-like (PK-like) PIK3C2G 5288 genome.wustl.edu 37 12 18715663 18715663 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004570.4 +1 reviewed p.F1165S 1.000 200 0% 124 19.4% 0 - probably_damaging(0.99) deleterious(0.04) deleterious(0.790) HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like) PIK3C2G 5288 genome.wustl.edu 37 12 18719941 18719941 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004570.4 +1 reviewed p.L1280I 1.000 260 0.4% 216 17.6% 0 - probably_damaging(0.999) tolerated(0.42) deleterious(0.504) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain CAPZA3 93661 genome.wustl.edu 37 12 18891767 18891767 + Missense_Mutation SNP A A C rs61740731 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033328.2 +1 reviewed p.I189L 0.829 269 0% 74 31.1% 0 - benign(0.011) tolerated(1) neutral(0.001) HMMPfam_F-actin_cap_A,superfamily_SSF90096 PLEKHA5 54477 genome.wustl.edu 37 12 19459429 19459429 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000309364 +1 known p.L648M 0.102 33 0% 24 16.7% 1 0% unknown(0) - - NULL PLEKHA5 54477 genome.wustl.edu 37 12 19499950 19499950 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143821.1 +1 validated p.R734H 1.000 191 0% 181 21.5% 0 - benign(0.126) tolerated(0.09) neutral(0.307) NULL PYROXD1 79912 genome.wustl.edu 37 12 21598280 21598280 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024854.3 +1 validated e3-1 1.000 106 0% 112 28.6% 0 - - - - - RECQL 5965 genome.wustl.edu 37 12 21630852 21630852 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002907.3 -1 reviewed p.I251N 0.945 260 0% 97 15.5% 12 41.6% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases RECQL 5965 genome.wustl.edu 37 12 21630862 21630862 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002907.3 -1 reviewed p.A248T 0.021 260 0.8% 98 30.6% 10 60% benign(0) tolerated(0.17) neutral(0.059) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases GYS2 2998 genome.wustl.edu 37 12 21695455 21695455 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021957.3 -1 reviewed p.E540D 1.000 85 0% 45 17.8% 0 - benign(0.334) tolerated(0.29) neutral(0.134) HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase GYS2 2998 genome.wustl.edu 37 12 21757407 21757407 + Frame_Shift_Del DEL T T - novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021957.3 -1 reviewed p.V41fs 1.000 - - - - - - - - - HMMPfam_Glycogen_syn KCNJ8 3764 genome.wustl.edu 37 12 21919525 21919525 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004982.2 -1 reviewed p.E136A 1.000 219 0% 138 26.1% 2 0% probably_damaging(0.972) deleterious(0) deleterious(0.859) HMMPfam_IRK,superfamily_SSF81324 ABCC9 10060 genome.wustl.edu 37 12 21998544 21998544 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005691.2 -1 reviewed p.A1030V 0.757 282 0% 107 24.3% 0 - benign(0) tolerated(0.32) neutral(0.024) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC9 10060 genome.wustl.edu 37 12 22015924 22015924 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005691.2 -1 reviewed p.E768K 1.000 279 0% 106 14.2% 0 - possibly_damaging(0.827) deleterious(0.02) deleterious(0.697) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCC9 10060 genome.wustl.edu 37 12 22059085 22059085 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005691.2 -1 reviewed p.T531 1.000 523 0.2% 186 19.4% 1 0% - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC9 10060 genome.wustl.edu 37 12 22068672 22068672 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005691.2 -1 reviewed p.G249E 1.000 404 0% 144 21.5% 0 - probably_damaging(0.998) tolerated(0.11) deleterious(0.746) NULL KIAA0528 9847 genome.wustl.edu 37 12 22635554 22635554 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014802.1 -1 predicted p.M558I 1.000 552 0% 140 25.7% 7 42.8% benign(0.137) deleterious(0.02) neutral(0.395) NULL ETNK1 55500 genome.wustl.edu 37 12 22796866 22796866 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018638.4 +1 reviewed p.L198P 1.000 246 0% 84 13.1% 19 31.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Choline_kinase,superfamily_Kinase_like SOX5 6660 genome.wustl.edu 37 12 23908599 23908599 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006940.4 -1 reviewed p.G181R 1.000 564 0% 182 19.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL BCAT1 586 genome.wustl.edu 37 12 25054777 25054777 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005504.6 -1 reviewed p.G17R 0.013 242 0% 254 13.8% 4 0% benign(0.372) deleterious(0.02) deleterious(0.502) NULL LRMP 4033 genome.wustl.edu 37 12 25242996 25242996 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006152.2 +1 reviewed p.E157 0.999 413 0% 151 29.1% 0 - - - - HMMPfam_MRVI1 IFLTD1 160492 genome.wustl.edu 37 12 25671820 25671820 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145728.1 -1 validated p.C366 0.118 258 0% 305 23.3% 0 - - - - NULL RASSF8 11228 genome.wustl.edu 37 12 26217804 26217804 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007211.4 +1 validated p.C159 0.956 73 0% 53 20.8% 0 - - - - NULL RASSF8 11228 genome.wustl.edu 37 12 26221695 26221695 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000405154 +1 known p.R402C 0.998 276 0% 164 23.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ITPR2 3709 genome.wustl.edu 37 12 26750028 26750028 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002223.2 -1 validated p.D1348Y 1.000 194 0% 82 22% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RYDR_ITPR ASUN 55726 genome.wustl.edu 37 12 27066586 27066586 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018164.2 -1 validated p.E537* 1.000 600 0% 265 25.3% 24 8.3% - - - HMMPfam_DUF2151 FGFR1OP2 26127 genome.wustl.edu 37 12 27109491 27109491 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015633.2 +1 validated p.Q51* 1.000 114 0% 36 25% 23 4.3% - - - HMMPfam_DUF837 TM7SF3 51768 genome.wustl.edu 37 12 27128584 27128584 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016551.2 -1 validated p.I432T 1.000 232 0% 65 38.5% 40 30% probably_damaging(0.954) deleterious(0) deleterious(0.842) NULL STK38L 23012 genome.wustl.edu 37 12 27470948 27470948 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015000.3 +1 validated p.L359F 1.000 211 0% 137 16.8% 6 50% benign(0.027) tolerated(0.09) neutral(0.298) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ARNTL2 56938 genome.wustl.edu 37 12 27555593 27555593 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020183.3 +1 provisional p.S487N 0.994 475 0% 269 22.7% 10 30% benign(0.418) deleterious(0.04) deleterious(0.484) NULL C12orf70 341346 genome.wustl.edu 37 12 27647251 27647251 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145010.1 +1 validated p.V207F 1.000 411 0% 193 20.2% 0 - benign(0.278) deleterious(0.02) neutral(0.413) NULL PPFIBP1 8496 genome.wustl.edu 37 12 27832958 27832958 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003622.2 +1 reviewed p.R620Q 0.998 148 0% 35 11.4% 13 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ENSG00000245593 0 genome.wustl.edu 37 12 29446221 29446221 + RNA SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000500230 -1 known NULL 0.234 497 0% 448 18.8% 0 - - - - - OVCH1 341350 genome.wustl.edu 37 12 29598312 29598312 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183378.2 -1 validated p.Y927C 0.009 228 0% 120 19.2% 0 - probably_damaging(0.999) tolerated(0.15) deleterious(0.732) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain OVCH1 341350 genome.wustl.edu 37 12 29608262 29608262 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183378.2 -1 validated p.A786D 0.000 139 0% 32 25% 0 - possibly_damaging(0.513) tolerated(0.43) neutral(0.186) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases OVCH1 341350 genome.wustl.edu 37 12 29617603 29617603 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183378.2 -1 validated p.E654D 0.051 222 0% 48 12.5% 0 - benign(0.099) tolerated(0.43) neutral(0.021) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases OVCH1 341350 genome.wustl.edu 37 12 29648217 29648217 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183378.2 -1 validated e4+1 0.927 335 0% 224 23.7% 0 - - - - - TMTC1 83857 genome.wustl.edu 37 12 29709803 29709803 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175861.2 -1 provisional p.G447W 1.000 467 0% 191 18.8% 10 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_Protein prenylyltransferase IPO8 10526 genome.wustl.edu 37 12 30805925 30805925 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006390.2 -1 reviewed p.Q684* 1.000 124 0% 58 13.8% 3 0% - - - superfamily_ARM-type_fold CAPRIN2 65981 genome.wustl.edu 37 12 30863357 30863357 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002259.1 -1 validated p.E955K 0.996 105 0% 55 32.7% 7 42.8% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL TSPAN11 441631 genome.wustl.edu 37 12 31131514 31131514 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080509.2 +1 validated p.V99I 0.963 521 0.2% 398 14.3% 0 - benign(0.001) tolerated(1) - superfamily_Tetraspanin,HMMPfam_Tetraspannin DDX11 1663 genome.wustl.edu 37 12 31242049 31242049 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152438.1 +1 reviewed p.G252 0.978 490 0% 458 19.2% 8 25% - - - HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases DENND5B 160518 genome.wustl.edu 37 12 31551144 31551144 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144973.3 -1 validated p.R1074K 1.000 283 0% 113 13.3% 2 50% benign(0.018) tolerated(0.12) neutral(0.261) NULL DENND5B 160518 genome.wustl.edu 37 12 31605218 31605218 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144973.3 -1 validated p.V429I 1.000 229 0% 154 18.8% 5 60% benign(0.009) tolerated(0.32) neutral(0.025) NULL METTL20 254013 genome.wustl.edu 37 12 31815056 31815056 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135863.1 +1 validated p.V57F 0.996 218 0% 211 23.2% 3 33.3% probably_damaging(0.961) deleterious(0.02) deleterious(0.787) NULL METTL20 254013 genome.wustl.edu 37 12 31820592 31820592 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135863.1 +1 validated p.A153S 1.000 66 0% 56 28.6% 4 50% possibly_damaging(0.948) tolerated(0.09) deleterious(0.688) HMMPfam_Methyltransf_16,superfamily_SSF53335 METTL20 254013 genome.wustl.edu 37 12 31820697 31820697 + Missense_Mutation SNP G G A rs143179970 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135863.1 +1 validated p.D188N 1.000 318 0% 231 23.8% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Methyltransf_16,superfamily_SSF53335 C12orf35 55196 genome.wustl.edu 37 12 32135757 32135757 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018169.3 +1 validated p.T623N 0.001 133 0% 50 26% 20 45% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL BICD1 636 genome.wustl.edu 37 12 32446945 32446945 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001714.2 +1 reviewed p.E148D 1.000 271 0% 132 15.9% 3 0% probably_damaging(0.984) tolerated(0.12) deleterious(0.691) HMMPfam_BicD FGD4 121512 genome.wustl.edu 37 12 32778686 32778686 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139241.2 +1 reviewed p.R578 0.918 209 0% 90 24.4% 5 80% - - - HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger CPNE8 144402 genome.wustl.edu 37 12 39242431 39242431 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153634.2 -1 reviewed p.N74H 1.000 148 0% 55 18.2% 3 33.3% possibly_damaging(0.607) deleterious(0.04) deleterious(0.559) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB ABCD2 225 genome.wustl.edu 37 12 39967520 39967520 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005164.3 -1 reviewed p.L667 1.000 183 0% 130 20% 3 0% - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases C12orf40 283461 genome.wustl.edu 37 12 40076436 40076436 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031748.2 +1 validated p.T237N 0.000 258 0% 136 20.6% 0 - probably_damaging(0.998) - - NULL LRRK2 120892 genome.wustl.edu 37 12 40687400 40687400 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198578.3 +1 reviewed p.E915* 1.000 320 0% 88 21.6% 1 0% - - - superfamily_SSF52058 LRRK2 120892 genome.wustl.edu 37 12 40715894 40715894 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198578.3 +1 reviewed p.S1743Y 1.000 236 0% 154 18.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL CNTN1 1272 genome.wustl.edu 37 12 41312514 41312514 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001843.2 +1 reviewed p.S56 0.961 213 0% 111 22.5% 1 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin CNTN1 1272 genome.wustl.edu 37 12 41422975 41422975 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001843.2 +1 reviewed p.A978 0.998 333 0.3% 101 19.8% 3 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PDZRN4 29951 genome.wustl.edu 37 12 41966364 41966364 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013377.3 +1 validated p.L337M 0.002 195 0% 63 23.8% 0 - benign(0.005) tolerated(0.08) neutral(0.300) NULL PDZRN4 29951 genome.wustl.edu 37 12 41967269 41967269 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013377.3 +1 validated p.D638 0.939 95 1.1% 31 25.8% 0 - - - - NULL ENSG00000248189 0 genome.wustl.edu 37 12 42854498 42854498 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000510816 +1 known NULL 0.000 130 0% 70 24.3% 0 - - - - - ADAMTS20 80070 genome.wustl.edu 37 12 43777427 43777427 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025003.3 -1 validated p.S1577 0.827 537 0.2% 258 24% 0 - - - - NULL ADAMTS20 80070 genome.wustl.edu 37 12 43819371 43819371 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025003.3 -1 validated p.C1410W 1.000 386 0% 167 16.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ADAMTS20 80070 genome.wustl.edu 37 12 43828059 43828059 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025003.3 -1 validated p.D903E 1.000 372 0% 136 21.3% 0 - benign(0.032) tolerated(0.2) neutral(0.051) HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ADAMTS20 80070 genome.wustl.edu 37 12 43896195 43896195 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025003.3 -1 validated p.K209 0.978 309 0% 457 22.8% 0 - - - - NULL PUS7L 83448 genome.wustl.edu 37 12 44148233 44148233 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098614.1 -1 validated p.P272 0.001 502 0% 662 20.7% 0 - - - - HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom IRAK4 51135 genome.wustl.edu 37 12 44171544 44171544 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114182.2 +1 reviewed p.C276* 0.998 429 0% 223 26% 11 0% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TMEM117 84216 genome.wustl.edu 37 12 44605151 44605151 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032256.1 +1 provisional p.V197I 0.669 291 0% 58 13.8% 3 0% benign(0) tolerated(0.3) neutral(0.029) NULL PLEKHA8P1 51054 genome.wustl.edu 37 12 45567654 45567654 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015899.1 -1 provisional p.N165K 0.000 389 0% 464 20.5% 3 33.3% - - - NULL ARID2 196528 genome.wustl.edu 37 12 46245388 46245388 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422737 +1 known p.Q1135* 1.000 157 0% 49 30.6% 4 0% probably_damaging(0.99) tolerated(0.15) deleterious(0.682) NULL ARID2 196528 genome.wustl.edu 37 12 46285633 46285633 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152641.2 +1 validated p.G1665W 1.000 398 0% 235 26.4% 9 66.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SLC38A1 81539 genome.wustl.edu 37 12 46602837 46602837 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077484.1 -1 validated p.G130C 1.000 281 0% 85 21.2% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aa_trans SLC38A4 55089 genome.wustl.edu 37 12 47172496 47172496 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143824.1 -1 validated p.L261M 0.985 182 0% 50 26% 0 - benign(0) tolerated(0.24) neutral(0.037) HMMPfam_Aa_trans SLC38A4 55089 genome.wustl.edu 37 12 47181766 47181766 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143824.1 -1 validated p.A87T 1.000 188 0% 33 30.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aa_trans AMIGO2 347902 genome.wustl.edu 37 12 47471693 47471693 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143668.1 -1 validated p.A365T 1.000 232 0% 345 13.6% 5 0% probably_damaging(0.984) deleterious(0) deleterious(0.875) HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 RPAP3 79657 genome.wustl.edu 37 12 48080621 48080621 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024604.2 -1 reviewed p.D312Y 1.000 495 0% 228 14.5% 23 13% probably_damaging(1) tolerated(0.74) deleterious(0.501) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like ENDOU 8909 genome.wustl.edu 37 12 48104646 48104646 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006025.3 -1 reviewed p.K350T 1.000 291 0% 279 22.9% 0 - benign(0.378) tolerated(0.06) neutral(0.443) NULL RAPGEF3 10411 genome.wustl.edu 37 12 48132029 48132029 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098531.2 -1 validated p.R843I 0.981 64 0% 62 21% 21 47.6% benign(0.092) deleterious(0.02) neutral(0.390) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF HDAC7 51564 genome.wustl.edu 37 12 48185078 48185078 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015401.3 -1 reviewed p.Q649H 1.000 90 0% 104 20.2% 63 31.7% possibly_damaging(0.941) tolerated(0.18) neutral(0.443) HMMPfam_Hist_deacetyl,superfamily_SSF52768 COL2A1 1280 genome.wustl.edu 37 12 48368002 48368002 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001844.4 -1 reviewed p.S1396N 1.000 302 0% 230 19.6% 1 0% unknown(0) deleterious(0) - HMMPfam_COLFI,HMMSmart_SM00038 COL2A1 1280 genome.wustl.edu 37 12 48376376 48376376 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001844.4 -1 reviewed p.A737V 0.883 36 0% 35 20% 0 - unknown(0) tolerated(0.55) - HMMPfam_Collagen SENP1 29843 genome.wustl.edu 37 12 48442882 48442882 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014554.2 -1 validated p.R481* 1.000 205 0.5% 44 22.7% 4 25% - - - HMMPfam_Peptidase_C48,superfamily_SSF54001 PFKM 5213 genome.wustl.edu 37 12 48501950 48501950 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340802 +1 known p.V60M 0.000 255 0% 225 21.8% 3 0% possibly_damaging(0.952) - - NULL PFKM 5213 genome.wustl.edu 37 12 48528026 48528026 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000289.5 +1 reviewed p.T202I 0.998 358 0% 122 27% 17 76.4% probably_damaging(0.964) deleterious(0) deleterious(0.851) HMMPfam_PFK,superfamily_Phosphofructokinase PFKM 5213 genome.wustl.edu 37 12 48529158 48529158 + Nonsense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000289.5 +1 reviewed p.R310* 0.999 309 0% 90 18.9% 16 6.2% - - - HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE PFKM 5213 genome.wustl.edu 37 12 48535135 48535135 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000289.5 +1 reviewed p.G461 0.991 182 0% 68 20.6% 18 27.7% - - - HMMPfam_PFK,superfamily_Phosphofructokinase PFKM 5213 genome.wustl.edu 37 12 48538839 48538839 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000289.5 +1 reviewed p.R673M 1.000 435 0% 223 24.7% 37 43.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE C12orf54 121273 genome.wustl.edu 37 12 48884616 48884616 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152319.3 +1 validated p.R64* 1.000 301 0% 230 26.1% 1 0% - - - NULL LOC100288297 100288297 genome.wustl.edu 37 12 49075181 49075181 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343165.1 +1 model p.W30* 0.949 628 0% 711 14.2% 19 26.3% benign(0.029) tolerated(0.4) neutral(0.018) NULL ADCY6 112 genome.wustl.edu 37 12 49166085 49166085 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015270.3 -1 reviewed p.K927T 1.000 126 0% 115 21.7% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ADCY6 112 genome.wustl.edu 37 12 49168286 49168286 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015270.3 -1 reviewed p.L728 1.000 178 0% 128 28.1% 11 63.6% - - - NULL ADCY6 112 genome.wustl.edu 37 12 49170333 49170333 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015270.3 -1 reviewed p.M471I 1.000 57 0% 62 25.8% 4 25% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain ADCY6 112 genome.wustl.edu 37 12 49171487 49171487 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015270.3 -1 reviewed p.H349 0.667 405 0% 364 11.8% 11 18.1% - - - HMMSmart_SM00044 CACNB3 784 genome.wustl.edu 37 12 49218732 49218732 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000725.2 +1 validated p.A158V 1.000 188 0% 190 19.5% 4 0% benign(0.006) tolerated(0.14) neutral(0.249) superfamily_SH3-domain CACNB3 784 genome.wustl.edu 37 12 49219247 49219247 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000725.2 +1 validated p.D202N 1.000 160 0% 165 22.4% 18 16.6% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases ARF3 377 genome.wustl.edu 37 12 49333511 49333511 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001659.2 -1 reviewed p.R104Q 1.000 240 0.4% 120 20.8% 154 37.6% possibly_damaging(0.489) deleterious(0.01) deleterious(0.568) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases ARF3 377 genome.wustl.edu 37 12 49333804 49333804 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001659.2 -1 reviewed p.R79G 1.000 307 0% 176 13.6% 153 22.2% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases MLL2 8085 genome.wustl.edu 37 12 49416532 49416532 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003482.3 -1 validated p.T5393 0.588 276 0% 221 24% 18 27.7% - - - HMMPfam_SET,superfamily_SET domain MLL2 8085 genome.wustl.edu 37 12 49420432 49420432 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003482.3 -1 validated p.R5106H 1.000 51 0% 40 40% 23 47.8% unknown(0) - - HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger MLL2 8085 genome.wustl.edu 37 12 49430998 49430998 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003482.3 -1 validated p.P3381T 1.000 99 2% 89 12.4% 1 0% unknown(0) - - NULL MLL2 8085 genome.wustl.edu 37 12 49447333 49447333 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003482.3 -1 validated p.C255 0.996 105 0% 119 28.6% 2 0% - - - HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD TUBA1B 10376 genome.wustl.edu 37 12 49523074 49523074 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006082.2 -1 validated p.T109I 1.000 547 0.2% 537 18.8% 958 41.9% possibly_damaging(0.945) - - HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like LOC100289071 100289071 genome.wustl.edu 37 12 49525085 49525085 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343170.1 +1 model p.*114 0.803 40 0% 57 24.6% 1253 42.2% - - - NULL TUBA1A 7846 genome.wustl.edu 37 12 49579389 49579389 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006009.2 -1 reviewed p.E254K 1.000 655 0% 532 24.8% 270 4.4% possibly_damaging(0.782) deleterious(0) deleterious(0.738) superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C PRPH 5630 genome.wustl.edu 37 12 49690963 49690963 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006262.3 +1 reviewed p.N301 1.000 83 0% 65 26.2% 0 - - - - HMMPfam_Filament TROAP 10024 genome.wustl.edu 37 12 49723686 49723686 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005480.3 +1 validated p.S404* 0.003 202 0% 228 21.9% 11 27.2% - - - NULL TROAP 10024 genome.wustl.edu 37 12 49723930 49723930 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005480.3 +1 validated p.R434 1.000 152 0% 148 25.7% 7 42.8% - - - NULL FAM186B 84070 genome.wustl.edu 37 12 49992538 49992538 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032130.2 -1 validated p.K788N 1.000 91 0% 61 18% 1 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL FAM186B 84070 genome.wustl.edu 37 12 49993719 49993719 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032130.2 -1 validated p.D568 0.210 238 0% 162 13.6% 0 - - - - NULL FMNL3 91010 genome.wustl.edu 37 12 50042044 50042044 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175736.4 -1 validated p.L870I 1.000 151 0% 120 27.5% 25 12% benign(0.051) deleterious(0.04) neutral(0.352) HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd FMNL3 91010 genome.wustl.edu 37 12 50047597 50047597 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175736.4 -1 validated p.V378M 1.000 575 0% 327 26.9% 10 10% benign(0.307) tolerated(0.15) neutral(0.337) HMMPfam_Drf_FH3 NCKAP5L 57701 genome.wustl.edu 37 12 50189268 50189268 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037806.3 -1 validated p.R792H 0.998 123 0% 137 13.1% 16 12.5% possibly_damaging(0.944) deleterious(0) deleterious(0.833) NULL NCKAP5L 57701 genome.wustl.edu 37 12 50189689 50189689 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037806.3 -1 validated p.R652* 0.362 41 0% 48 18.8% 1 0% - - - NULL RACGAP1 29127 genome.wustl.edu 37 12 50386048 50386048 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126103.1 -1 validated p.D520Y 1.000 288 0% 119 22.7% 44 43.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RhoGAP,superfamily_Rho_GAP RACGAP1 29127 genome.wustl.edu 37 12 50388282 50388282 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126103.1 -1 validated p.A352V 1.000 211 0% 101 16.8% 33 33.3% possibly_damaging(0.579) deleterious(0.03) deleterious(0.564) NULL RACGAP1 29127 genome.wustl.edu 37 12 50395035 50395035 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126103.1 -1 validated p.R184C 1.000 137 0% 81 18.5% 16 37.5% benign(0.233) tolerated(0.07) neutral(0.343) NULL ASIC1 41 genome.wustl.edu 37 12 50453675 50453675 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020039.2 +1 reviewed p.R166* 1.000 95 0% 119 20.2% 1 0% - - - HMMPfam_ASC LIMA1 51474 genome.wustl.edu 37 12 50570879 50570879 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113546.1 -1 validated p.R751W 1.000 996 0% 637 20.3% 47 40.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM186A 121006 genome.wustl.edu 37 12 50747244 50747244 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145475.1 -1 provisional p.T1124I 0.002 376 0.5% 212 16% 0 - probably_damaging(0.994) tolerated(0.17) deleterious(0.511) NULL FAM186A 121006 genome.wustl.edu 37 12 50754643 50754643 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145475.1 -1 provisional p.E160G 0.200 454 0% 176 14.8% 0 - probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL DIP2B 57609 genome.wustl.edu 37 12 51128860 51128860 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173602.2 +1 validated p.R1350S 1.000 370 0% 175 28.6% 6 50% benign(0.024) tolerated(0.58) neutral(0.006) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like CSRNP2 81566 genome.wustl.edu 37 12 51467784 51467784 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030809.1 -1 provisional p.R78Q 1.000 139 0% 100 14% 4 25% possibly_damaging(0.666) deleterious(0) deleterious(0.680) NULL BIN2 51411 genome.wustl.edu 37 12 51689604 51689604 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016293.2 -1 validated p.V246A 1.000 222 0% 148 11.5% 22 0% possibly_damaging(0.533) tolerated(0.39) neutral(0.196) NULL SLC4A8 9498 genome.wustl.edu 37 12 51899625 51899625 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039960.1 +1 validated p.D1060 1.000 399 0% 211 24.2% 0 - - - - NULL GRASP 160622 genome.wustl.edu 37 12 52402975 52402975 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181711.2 +1 provisional p.G83D 1.000 150 0% 226 20.4% 4 0% possibly_damaging(0.765) tolerated(0.25) neutral(0.321) NULL NR4A1 3164 genome.wustl.edu 37 12 52451313 52451313 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002135.3 +1 reviewed p.T513 1.000 239 0% 285 25.6% 19 47.3% - - - HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain KRT80 144501 genome.wustl.edu 37 12 52579309 52579309 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182507.2 -1 reviewed p.Q121H 1.000 79 0% 77 27.3% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMPfam_Filament ENSG00000135477 0 genome.wustl.edu 37 12 52652028 52652028 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000257935 -1 known p.A104T 0.716 315 0% 388 28.6% 0 - - - - NULL KRT75 9119 genome.wustl.edu 37 12 52827705 52827705 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004693.2 -1 reviewed p.Q128H 1.000 406 0% 288 21.2% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL KRT6A 3853 genome.wustl.edu 37 12 52881705 52881705 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005554.3 -1 reviewed p.G498 0.012 193 0.5% 144 12.5% 0 - - - - NULL KRT73 319101 genome.wustl.edu 37 12 53012125 53012125 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175068.2 -1 reviewed p.A62S 0.008 56 0% 54 22.2% 0 - possibly_damaging(0.838) tolerated(0.16) neutral(0.380) NULL KRT76 51350 genome.wustl.edu 37 12 53165722 53165722 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015848.4 -1 reviewed p.S399I 0.959 414 0% 237 12.7% 0 - benign(0.113) tolerated(0.12) neutral(0.270) superfamily_Prefoldin,HMMPfam_Filament KRT79 338785 genome.wustl.edu 37 12 53227764 53227764 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175834.2 -1 reviewed p.A94V 0.003 69 0% 52 34.6% 1 100% benign(0.312) tolerated(0.22) neutral(0.140) NULL KRT79 338785 genome.wustl.edu 37 12 53227788 53227788 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175834.2 -1 reviewed p.G86E 0.940 50 0% 35 40% 1 100% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL KRT78 196374 genome.wustl.edu 37 12 53241843 53241843 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173352.2 -1 reviewed p.Q149H 0.928 81 0% 54 18.5% 0 - benign(0.104) deleterious(0.03) neutral(0.372) HMMPfam_Filament KRT8 3856 genome.wustl.edu 37 12 53291364 53291364 + Missense_Mutation SNP C C T rs58573614 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002273.3 -1 reviewed p.G434S 0.943 39 0% 45 22.2% 1822 41.9% benign(0.008) tolerated(0.24) neutral(0.037) NULL KRT8 3856 genome.wustl.edu 37 12 53292486 53292486 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002273.3 -1 reviewed p.K393N 1.000 151 0% 134 16.4% 2396 50.3% possibly_damaging(0.8) deleterious(0) deleterious(0.746) HMMPfam_Filament,PatternScan_IF LOC100129362 100129362 genome.wustl.edu 37 12 53342929 53342929 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001725644.2 -1 model p.T138I 0.002 28 0% 29 20.7% 99 46.4% - - - NULL TENC1 23371 genome.wustl.edu 37 12 53454217 53454217 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015319.2 +1 reviewed p.E892 0.998 50 0% 59 20.3% 11 9% - - - NULL TENC1 23371 genome.wustl.edu 37 12 53456223 53456223 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015319.2 +1 reviewed p.R1254H 0.199 193 0% 146 23.3% 10 30% benign(0.22) deleterious(0.04) neutral(0.370) superfamily_SSF55550 IGFBP6 3489 genome.wustl.edu 37 12 53494638 53494638 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002178.2 +1 validated p.E159 0.995 147 0% 166 24.1% 10 10% - - - superfamily_Thyroglobulin_1 SOAT2 8435 genome.wustl.edu 37 12 53498974 53498974 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003578.3 +1 reviewed p.S74 0.000 148 0% 142 23.2% 1 0% - - - NULL CSAD 51380 genome.wustl.edu 37 12 53564258 53564258 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015989.4 -1 validated p.A226V 1.000 188 0% 170 24.7% 5 60% possibly_damaging(0.555) tolerated(0.05) deleterious(0.535) HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases ZNF740 283337 genome.wustl.edu 37 12 53580194 53580194 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004304.3 +1 validated p.C131 1.000 165 0% 156 25.6% 7 42.8% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ESPL1 9700 genome.wustl.edu 37 12 53663284 53663284 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012291.4 +1 validated p.E186D 0.280 124 0.8% 131 13% 4 50% benign(0.04) tolerated(0.2) neutral(0.052) NULL ESPL1 9700 genome.wustl.edu 37 12 53666549 53666549 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012291.4 +1 validated p.L472I 1.000 306 0% 294 30.6% 1 0% probably_damaging(0.98) tolerated(0.06) deleterious(0.746) NULL ESPL1 9700 genome.wustl.edu 37 12 53675314 53675314 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012291.4 +1 validated p.S841 0.000 244 0% 200 26.5% 5 60% - - - NULL AAAS 8086 genome.wustl.edu 37 12 53702751 53702751 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015665.5 -1 reviewed p.R330H 1.000 251 0% 237 25.7% 47 42.5% probably_damaging(0.978) tolerated(0.26) neutral(0.455) superfamily_WD40_like AMHR2 269 genome.wustl.edu 37 12 53819538 53819538 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020547.2 +1 reviewed p.I229 1.000 117 0% 85 16.5% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TARBP2 6895 genome.wustl.edu 37 12 53899475 53899475 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134323.1 +1 reviewed p.G262C 1.000 149 0% 125 24% 71 33.8% probably_damaging(0.989) deleterious(0.02) deleterious(0.823) NULL CALCOCO1 57658 genome.wustl.edu 37 12 54113567 54113567 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020898.2 -1 validated p.L269I 0.574 540 0% 277 11.6% 41 12.1% probably_damaging(0.955) tolerated(0.51) neutral(0.408) HMMPfam_CALCOCO1 HOXC10 3226 genome.wustl.edu 37 12 54383143 54383143 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017409.3 +1 reviewed p.I314 1.000 224 0% 257 19.5% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 HOXC4 3221 genome.wustl.edu 37 12 54447915 54447915 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014620.4 +1 reviewed p.T70I 1.000 49 0% 53 35.8% 14 42.8% benign(0.035) tolerated(0.08) neutral(0.302) NULL CBX5 23468 genome.wustl.edu 37 12 54645972 54645972 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127321.1 -1 reviewed p.C59 0.990 326 0% 357 25.5% 30 40% - - - HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like NFE2 4778 genome.wustl.edu 37 12 54686359 54686359 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136023.1 -1 provisional p.R307 0.997 39 0% 22 27.3% 1 100% - - - HMMSmart_SM00338,HMMPfam_bZIP_1 NCKAP1L 3071 genome.wustl.edu 37 12 54891610 54891610 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005337.4 +1 reviewed p.E13* 1.000 177 0% 131 19.8% 3 33.3% - - - HMMPfam_Nckap1 NEUROD4 58158 genome.wustl.edu 37 12 55420388 55420388 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021191.2 +1 validated p.E55D 0.216 122 0% 56 25% 0 - possibly_damaging(0.942) tolerated(0.39) neutral(0.403) NULL OR9K2 441639 genome.wustl.edu 37 12 55523823 55523823 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005243.1 +1 provisional p.L91I 1.000 246 0% 112 14.3% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PHC1P1 653441 genome.wustl.edu 37 12 55805512 55805512 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000326184 -1 known p.E1003D 0.996 115 0% 142 21.1% 3 0% - - - HMMSmart_SM00454 PHC1P1 653441 genome.wustl.edu 37 12 55808221 55808221 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000326184 -1 known p.Q100H 0.973 214 0% 293 21.8% 4 0% - - - NULL OR2AP1 121129 genome.wustl.edu 37 12 55968650 55968650 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000321688 +1 known p.L151R 0.003 72 0% 33 33.3% 0 - possibly_damaging(0.893) deleterious(0) deleterious(0.796) HMMPfam_7tm_1,superfamily_SSF81321 ITGA7 3679 genome.wustl.edu 37 12 56088735 56088735 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144996.1 -1 reviewed p.A679S 0.995 35 0% 38 18.4% 10 20% benign(0.406) tolerated(0.57) neutral(0.137) HMMPfam_Integrin_alpha2,superfamily_Integrin domains GDF11 10220 genome.wustl.edu 37 12 56143508 56143508 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005811.3 +1 reviewed p.T356A 1.000 130 0% 139 12.9% 12 8.3% benign(0.076) tolerated(0.1) neutral(0.292) HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501 DGKA 1606 genome.wustl.edu 37 12 56331270 56331270 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001345.4 +1 reviewed p.A73S 1.000 459 0% 452 20.1% 10 20% benign(0.02) tolerated(0.32) neutral(0.025) superfamily_EF-hand DGKA 1606 genome.wustl.edu 37 12 56334110 56334110 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001345.4 +1 reviewed p.V271M 1.000 228 0% 172 27.3% 7 28.5% unknown(0) deleterious(0.05) - HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain DGKA 1606 genome.wustl.edu 37 12 56335092 56335092 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001345.4 +1 reviewed p.G386 0.271 441 0% 344 23.3% 12 0% - - - HMMPfam_DAGK_cat,HMMSmart_SM00046 PMEL 6490 genome.wustl.edu 37 12 56348105 56348105 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006928.3 -1 validated p.V627I 0.000 500 0.2% 270 20.7% 3 33.3% benign(0) tolerated(0.75) neutral(0.002) NULL RAB5B 5869 genome.wustl.edu 37 12 56385937 56385937 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002868.2 +1 validated p.R197W 1.000 199 0% 142 14.8% 74 21.6% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases SUOX 6821 genome.wustl.edu 37 12 56398366 56398366 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000456.2 +1 reviewed p.R398Q 1.000 274 0% 237 21.5% 33 30.3% possibly_damaging(0.477) tolerated(0.43) neutral(0.171) superfamily_Oxidored_molyb ERBB3 2065 genome.wustl.edu 37 12 56495060 56495060 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001982.2 +1 reviewed p.L1139 1.000 111 0% 80 23.7% 22 59% - - - NULL ERBB3 2065 genome.wustl.edu 37 12 56495575 56495575 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001982.2 +1 reviewed p.T1255 0.693 96 0% 93 22.6% 24 37.5% - - - NULL ZC3H10 84872 genome.wustl.edu 37 12 56515023 56515023 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032786.1 +1 provisional p.E226A 0.982 44 0% 57 22.8% 8 50% benign(0.014) tolerated(0.54) neutral(0.008) NULL ESYT1 23344 genome.wustl.edu 37 12 56527423 56527423 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015292.2 +1 validated p.L449 1.000 412 0% 243 18.1% 65 38.4% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) ESYT1 23344 genome.wustl.edu 37 12 56530534 56530534 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015292.2 +1 validated p.D547Y 1.000 131 0% 104 27.9% 47 36.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) RNF41 10193 genome.wustl.edu 37 12 56604162 56604162 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005785.2 -1 reviewed p.V94A 1.000 117 0% 76 23.7% 24 29.1% benign(0.001) deleterious(0.04) neutral(0.349) superfamily_TRAF domain-like ANKRD52 283373 genome.wustl.edu 37 12 56646612 56646612 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173595.3 -1 validated p.T418I 1.000 225 0% 137 20.4% 5 60% possibly_damaging(0.674) deleterious(0.03) deleterious(0.604) superfamily_ANK COQ10A 93058 genome.wustl.edu 37 12 56662858 56662858 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144576.3 +1 validated p.E99D 1.000 423 0% 409 21.5% 7 28.5% benign(0.041) tolerated(0.28) neutral(0.034) HMMPfam_Polyketide_cyc CS 1431 genome.wustl.edu 37 12 56668876 56668876 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004077.2 -1 reviewed p.H276Q 0.999 139 0% 110 10.9% 99 32.3% possibly_damaging(0.78) deleterious(0.02) deleterious(0.674) HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core PAN2 9924 genome.wustl.edu 37 12 56716446 56716446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127460.2 -1 reviewed p.L868M 1.000 183 0% 111 15.3% 11 27.2% possibly_damaging(0.748) tolerated(0.09) deleterious(0.571) HMMPfam_UCH,superfamily_Cysteine proteinases PAN2 9924 genome.wustl.edu 37 12 56716516 56716516 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127460.2 -1 reviewed p.E844D 1.000 146 0% 115 23.5% 8 87.5% benign(0) tolerated(0.53) neutral(0.007) HMMPfam_UCH,superfamily_Cysteine proteinases TIMELESS 8914 genome.wustl.edu 37 12 56826248 56826248 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003920.3 -1 validated p.L198 1.000 137 0% 62 9.7% 16 18.7% - - - HMMPfam_TIMELESS MIP 4284 genome.wustl.edu 37 12 56847525 56847525 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012064.3 -1 reviewed p.V125 1.000 49 0% 33 21.2% 1 0% - - - HMMPfam_MIP,superfamily_MIP SPRYD4 283377 genome.wustl.edu 37 12 56863221 56863221 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207344.3 +1 validated p.L162 1.000 182 0% 208 24% 16 25% - - - HMMPfam_SPRY,HMMSmart_SM00449 GLS2 27165 genome.wustl.edu 37 12 56866494 56866494 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013267.2 -1 reviewed p.G497 0.987 304 0% 274 22.6% 2 50% - - - superfamily_Ankyrin repeat BAZ2A 11176 genome.wustl.edu 37 12 56993578 56993578 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013449.3 -1 validated p.G1696R 1.000 238 0.4% 172 18.6% 20 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD ATP5B 506 genome.wustl.edu 37 12 57032911 57032911 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001686.3 -1 reviewed p.G490* 1.000 273 0% 316 15.5% 1555 27.1% - - - HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase NACA 4666 genome.wustl.edu 37 12 57113053 57113053 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113203.1 -1 validated p.I754S 0.047 142 0% 123 13.8% 1 0% unknown(0) - - NULL NACA 4666 genome.wustl.edu 37 12 57113583 57113583 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113203.1 -1 validated p.S577 0.001 293 0% 190 21.6% 0 - - - - NULL ZBTB39 9880 genome.wustl.edu 37 12 57397141 57397141 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014830.1 -1 provisional p.H521Y 1.000 78 0% 102 27.5% 0 - possibly_damaging(0.485) tolerated(0.76) neutral(0.162) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TMEM194A 23306 genome.wustl.edu 37 12 57454668 57454668 + Nonsense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130963.1 -1 validated p.Y347* 1.000 323 0% 102 23.5% 6 33.3% - - - HMMPfam_DUF2215 TMEM194A 23306 genome.wustl.edu 37 12 57466571 57466571 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130963.1 -1 validated p.Q84H 1.000 290 0% 188 19.1% 3 0% probably_damaging(0.984) deleterious(0.01) deleterious(0.836) NULL NAB2 4665 genome.wustl.edu 37 12 57485367 57485367 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005967.3 +1 reviewed p.D181 0.963 44 0% 46 23.9% 15 60% - - - NULL STAT6 6778 genome.wustl.edu 37 12 57490386 57490386 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003153.4 -1 reviewed p.H838P 1.000 99 0% 84 22.6% 53 37.7% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL STAT6 6778 genome.wustl.edu 37 12 57498306 57498306 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003153.4 -1 reviewed p.A385T 0.995 158 0% 130 26.2% 44 61.3% probably_damaging(1) tolerated(0.68) deleterious(0.502) superfamily_p53-like transcription factors,HMMPfam_STAT_bind LRP1 4035 genome.wustl.edu 37 12 57570837 57570837 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.F1335 0.449 215 0% 152 19.1% 0 - - - - HMMPfam_Ldl_recept_b,superfamily_YWTD domain LRP1 4035 genome.wustl.edu 37 12 57578175 57578175 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.E2042D 0.821 132 0% 139 10.8% 2 0% possibly_damaging(0.49) tolerated(0.57) neutral(0.169) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain LRP1 4035 genome.wustl.edu 37 12 57579565 57579565 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.L2239M 0.986 99 0% 115 20.9% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_YWTD domain LRP1 4035 genome.wustl.edu 37 12 57585121 57585121 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.P2419S 1.000 52 0% 43 14% 2 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain LRP1 4035 genome.wustl.edu 37 12 57590936 57590936 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.K3022E 1.000 83 0% 78 23.1% 5 0% benign(0.277) tolerated(0.09) neutral(0.326) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin LRP1 4035 genome.wustl.edu 37 12 57597018 57597018 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.A3589V 1.000 42 0% 53 32.1% 13 7.6% benign(0.311) tolerated(0.1) neutral(0.383) HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00181 LRP1 4035 genome.wustl.edu 37 12 57604635 57604635 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002332.2 +1 reviewed p.G4297S 0.996 33 0% 30 36.7% 32 0% benign(0.013) tolerated(0.25) neutral(0.037) HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin SHMT2 6472 genome.wustl.edu 37 12 57627877 57627877 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005412.5 +1 reviewed p.E457 0.921 195 0% 197 18.8% 174 31% - - - superfamily_PyrdxlP-dep_Trfase_major R3HDM2 22864 genome.wustl.edu 37 12 57648612 57648612 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014925.3 -1 validated p.R959* 1.000 255 0% 130 23.8% 27 33.3% - - - NULL INHBC 3626 genome.wustl.edu 37 12 57843760 57843760 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005538.2 +1 reviewed p.K338N 1.000 75 0% 59 18.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines ARHGAP9 64333 genome.wustl.edu 37 12 57873078 57873078 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032496.2 -1 reviewed p.A38T 0.984 151 0% 155 25.2% 9 0% benign(0) tolerated(0.48) neutral(0.011) HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 MARS 4141 genome.wustl.edu 37 12 57894213 57894213 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004990.2 +1 reviewed p.V401M 1.000 281 0% 300 27% 37 67.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_1g,superfamily_SSF52374,superfamily_SSF57770 MARS 4141 genome.wustl.edu 37 12 57906130 57906130 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004990.2 +1 reviewed p.A583T 1.000 276 0.4% 241 22% 63 9.5% possibly_damaging(0.521) tolerated(0.1) neutral(0.462) HMMPfam_tRNA-synt_1g,superfamily_SSF52374 MARS 4141 genome.wustl.edu 37 12 57908841 57908841 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004990.2 +1 reviewed p.R735K 1.000 267 0% 206 22.8% 72 16.6% benign(0) tolerated(1) - superfamily_tRNAsyn_1a_bind MBD6 114785 genome.wustl.edu 37 12 57922743 57922743 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052897.3 +1 validated p.S963I 1.000 209 0% 262 15.3% 51 15.6% possibly_damaging(0.916) - - NULL KIF5A 3798 genome.wustl.edu 37 12 57962813 57962813 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004984.2 +1 reviewed p.A261D 1.000 193 0.5% 102 20.6% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases ARHGEF25 115557 genome.wustl.edu 37 12 58006769 58006769 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111270.1 +1 validated p.L91M 0.983 69 0% 106 25.5% 5 0% possibly_damaging(0.947) tolerated(0.22) neutral(0.432) NULL SLC26A10 65012 genome.wustl.edu 37 12 58016658 58016658 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133489.2 +1 validated p.S294T 1.000 391 0% 420 16.9% 1 0% probably_damaging(0.991) tolerated(0.82) neutral(0.445) HMMPfam_Sulfate_transp SLC26A10 65012 genome.wustl.edu 37 12 58018741 58018741 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133489.2 +1 validated p.H440 0.386 579 0% 533 23.3% 0 - - - - HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa MARCH9 92979 genome.wustl.edu 37 12 58152016 58152016 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138396.4 +1 validated p.W213* 1.000 383 0% 457 19.7% 67 41.7% - - - NULL CYP27B1 1594 genome.wustl.edu 37 12 58160709 58160709 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000785.3 -1 reviewed p.D39G 1.000 110 0% 123 26.8% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL TSFM 10102 genome.wustl.edu 37 12 58190114 58190114 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005726.5 +1 reviewed p.T242 0.011 137 0% 84 23.8% 103 41.7% - - - HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain AVIL 10677 genome.wustl.edu 37 12 58191708 58191708 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006576.3 -1 reviewed p.G806D 0.793 510 0% 278 20.5% 3 33.3% benign(0.119) tolerated(0.38) neutral(0.027) HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain AVIL 10677 genome.wustl.edu 37 12 58200280 58200280 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006576.3 -1 reviewed p.V512L 0.018 411 0% 171 11.7% 2 0% benign(0.146) deleterious(0.05) neutral(0.358) HMMSmart_SM00262,superfamily_Actin depolymerizing proteins XRCC6BP1 91419 genome.wustl.edu 37 12 58350635 58350635 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033276.2 +1 provisional p.D235N 1.000 321 0% 182 17.6% 32 50% benign(0.188) deleterious(0.01) neutral(0.423) NULL LRIG3 121227 genome.wustl.edu 37 12 59282633 59282633 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153377.3 -1 provisional p.G257 0.993 542 0% 201 20.9% 5 80% - - - HMMSmart_SM00369,superfamily_RNI-like USP15 9958 genome.wustl.edu 37 12 62688081 62688081 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006313.1 +1 provisional p.L71I 1.000 258 0% 94 19.1% 13 30.7% benign(0.003) tolerated(0.37) neutral(0.019) HMMSmart_DUSP MON2 23041 genome.wustl.edu 37 12 62918368 62918368 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015026.2 +1 validated p.A353V 1.000 165 0% 51 15.7% 2 50% benign(0.073) deleterious(0.02) neutral(0.388) NULL MON2 23041 genome.wustl.edu 37 12 62974119 62974119 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015026.2 +1 validated p.F1540V 1.000 371 0% 301 18.3% 9 22.2% benign(0.001) tolerated(0.54) neutral(0.007) superfamily_ARM-type_fold ENSG00000250314 0 genome.wustl.edu 37 12 63398237 63398237 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000514535 -1 known NULL 1.000 124 0% 140 20.7% 0 - - - - - DPY19L2 283417 genome.wustl.edu 37 12 63954418 63954418 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173812.4 -1 validated p.I717 0.998 168 0% 62 25.8% 1 100% - - - HMMPfam_DUF2211 DPY19L2 283417 genome.wustl.edu 37 12 63974505 63974505 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173812.4 -1 validated p.G613* 1.000 335 0% 169 11.2% 0 - - - - HMMPfam_DUF2211 DPY19L2 283417 genome.wustl.edu 37 12 64011138 64011138 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173812.4 -1 validated p.F388 1.000 251 0% 70 14.3% 1 0% - - - HMMPfam_DUF2211 C12orf66 144577 genome.wustl.edu 37 12 64588118 64588118 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152440.4 -1 validated p.T281M 1.000 237 0% 244 26.2% 3 33.3% benign(0.034) tolerated(0.09) neutral(0.298) HMMPfam_DUF2003 C12orf56 115749 genome.wustl.edu 37 12 64746822 64746822 + Silent SNP C C T rs140681878 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099676.2 -1 validated p.P89 1.000 269 0% 71 26.8% 0 - - - - NULL XPOT 11260 genome.wustl.edu 37 12 64810528 64810528 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007235.3 +1 reviewed p.K65R 1.000 596 0% 534 23% 14 42.8% benign(0.382) tolerated(0.46) neutral(0.134) superfamily_ARM-type_fold XPOT 11260 genome.wustl.edu 37 12 64812733 64812733 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007235.3 +1 reviewed p.E116 0.939 367 1.1% 242 18.6% 7 42.8% - - - HMMPfam_Xpo1,superfamily_ARM-type_fold XPOT 11260 genome.wustl.edu 37 12 64819683 64819683 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007235.3 +1 reviewed p.S554F 1.000 289 0% 162 24.1% 23 47.8% possibly_damaging(0.791) tolerated(0.44) neutral(0.309) superfamily_ARM-type_fold XPOT 11260 genome.wustl.edu 37 12 64825572 64825572 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007235.3 +1 reviewed p.P744H 1.000 177 0.6% 69 21.7% 58 34.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ARM-type_fold TBK1 29110 genome.wustl.edu 37 12 64860795 64860795 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013254.2 +1 reviewed p.F158C 1.000 573 0% 210 19.5% 12 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase WIF1 11197 genome.wustl.edu 37 12 65445210 65445210 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007191.4 -1 reviewed p.G353 1.000 118 0% 59 25.4% 1 0% - - - NULL WIF1 11197 genome.wustl.edu 37 12 65461522 65461522 + Missense_Mutation SNP C C T rs144593509 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007191.4 -1 reviewed p.R196H 0.880 175 0% 46 15.2% 0 - probably_damaging(0.978) tolerated(0.66) neutral(0.423) HMMSmart_EGF,HMMPfam_EGF_2 IRAK3 11213 genome.wustl.edu 37 12 66605231 66605231 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007199.2 +1 reviewed p.L148M 0.001 271 0% 307 21.8% 0 - probably_damaging(0.961) deleterious(0.04) deleterious(0.753) NULL IRAK3 11213 genome.wustl.edu 37 12 66611014 66611014 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007199.2 +1 reviewed p.L218M 0.161 849 0% 1084 21.4% 0 - probably_damaging(0.999) tolerated(0.09) deleterious(0.787) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase IRAK3 11213 genome.wustl.edu 37 12 66641872 66641872 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007199.2 +1 reviewed p.S571F 0.009 138 0% 112 18.8% 3 33.3% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL HELB 92797 genome.wustl.edu 37 12 66704299 66704299 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033647.2 +1 reviewed p.A531T 0.004 148 0% 63 19% 1 0% benign(0.244) tolerated(0.53) neutral(0.032) superfamily_P-loop containing nucleoside triphosphate hydrolases DYRK2 8445 genome.wustl.edu 37 12 68051933 68051933 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006482.2 +1 reviewed p.L416 1.000 171 0% 139 25.9% 45 28.8% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase IFNG 3458 genome.wustl.edu 37 12 68551973 68551973 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000619.2 -1 reviewed p.E61* 0.827 442 0% 224 12.9% 9 0% - - - HMMPfam_IFN-gamma,superfamily_4-helical cytokines CPM 1368 genome.wustl.edu 37 12 69250339 69250339 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005502.2 -1 reviewed p.P404T 0.000 377 0% 184 25% 30 43.3% benign(0) tolerated(0.46) neutral(0.012) HMMSmart_Zn_pept,superfamily_CarboxypepD_reg LRRC10 376132 genome.wustl.edu 37 12 70004478 70004478 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201550.2 -1 provisional p.H47 0.082 69 0% 53 11.3% 0 - - - - superfamily_SSF52058 BEST3 144453 genome.wustl.edu 37 12 70048767 70048767 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032735.2 -1 validated p.L643M 0.031 322 0.3% 84 16.7% 0 - benign(0.075) tolerated(0.19) neutral(0.054) NULL CNOT2 4848 genome.wustl.edu 37 12 70723291 70723291 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014515.4 +1 provisional p.H109 1.000 272 0% 92 21.7% 42 40.4% - - - NULL PTPRR 5801 genome.wustl.edu 37 12 71054756 71054756 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002849.2 -1 reviewed p.A577D 0.997 286 0% 78 26.9% 1 0% benign(0.001) tolerated(0.13) neutral(0.253) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTPRR 5801 genome.wustl.edu 37 12 71094954 71094954 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002849.2 -1 reviewed p.V386D 0.997 246 0% 60 10% 0 - benign(0.051) deleterious(0.03) neutral(0.367) superfamily_(Phosphotyrosine protein) phosphatases II LGR5 8549 genome.wustl.edu 37 12 71966648 71966648 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003667.2 +1 provisional p.E385D 0.998 288 0% 98 15.3% 23 34.7% benign(0.086) deleterious(0.03) neutral(0.371) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like TMEM19 55266 genome.wustl.edu 37 12 72094663 72094663 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018279.3 +1 validated p.R300M 0.856 436 0.2% 212 20.3% 16 31.2% benign(0.407) deleterious(0.02) deleterious(0.514) HMMPfam_DUF92 TRHDE 29953 genome.wustl.edu 37 12 73012689 73012689 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013381.2 +1 reviewed p.Q735H 1.000 62 0% 40 20% 0 - possibly_damaging(0.91) deleterious(0.02) deleterious(0.746) NULL TRHDE 29953 genome.wustl.edu 37 12 73046895 73046895 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013381.2 +1 reviewed p.A936 1.000 219 0% 87 31% 0 - - - - NULL TRHDE 29953 genome.wustl.edu 37 12 73050756 73050756 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013381.2 +1 reviewed p.E967* 1.000 232 0.4% 85 16.5% 0 - - - - NULL ATXN7L3B 552889 genome.wustl.edu 37 12 74931973 74931973 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136262.1 +1 validated p.E27 1.000 409 0% 386 21.5% 28 50% - - - NULL BBS10 79738 genome.wustl.edu 37 12 76740010 76740010 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024685.3 -1 reviewed p.T585 0.008 221 0% 195 15.4% 13 38.4% - - - superfamily_GroEL-ATPase OSBPL8 114882 genome.wustl.edu 37 12 76765301 76765301 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020841.4 -1 reviewed p.P661S 0.973 584 0% 224 18.8% 3 0% benign(0) tolerated(0.29) neutral(0.029) HMMPfam_Oxysterol_BP E2F7 144455 genome.wustl.edu 37 12 77419505 77419505 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203394.2 -1 validated p.A800S 0.000 300 0% 183 21.3% 0 - benign(0.023) tolerated(0.89) neutral(0.001) NULL E2F7 144455 genome.wustl.edu 37 12 77438493 77438493 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203394.2 -1 validated p.K304N 1.000 456 0% 250 22.8% 0 - benign(0.096) tolerated(0.44) neutral(0.019) "HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain" NAV3 89795 genome.wustl.edu 37 12 78415632 78415632 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014903.4 +1 validated p.E671D 1.000 212 0% 40 32.5% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL NAV3 89795 genome.wustl.edu 37 12 78513519 78513519 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014903.4 +1 validated p.P1181 0.375 207 0% 126 23% 0 - - - - NULL NAV3 89795 genome.wustl.edu 37 12 78573333 78573333 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014903.4 +1 validated p.E1774D 1.000 136 0% 21 19% 0 - probably_damaging(0.987) tolerated(0.54) neutral(0.444) NULL NAV3 89795 genome.wustl.edu 37 12 78574692 78574692 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014903.4 +1 validated p.K1831N 1.000 213 0% 34 17.6% 0 - probably_damaging(0.963) deleterious(0.01) deleterious(0.811) NULL LOC338756 338756 genome.wustl.edu 37 12 79952790 79952790 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001714544.1 +1 model p.E114K 0.005 24 0% 28 28.6% 1 0% - - - NULL OTOGL 283310 genome.wustl.edu 37 12 80651695 80651695 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343203.1 +1 model p.R542I 1.000 652 0% 426 25.6% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_VWD,HMMSmart_SM00216 OTOGL 283310 genome.wustl.edu 37 12 80655789 80655789 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343203.1 +1 model p.A585T 1.000 297 0% 161 28% 0 - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL OTOGL 283310 genome.wustl.edu 37 12 80696480 80696480 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343203.1 +1 model p.V949I 0.999 126 0% 152 13.8% 0 - benign(0.012) tolerated(1) neutral(0.001) HMMPfam_VWD,HMMSmart_SM00216 OTOGL 283310 genome.wustl.edu 37 12 80722872 80722872 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343203.1 +1 model p.A1346S 0.749 421 0% 195 11.3% 0 - benign(0) tolerated(0.66) neutral(0.003) NULL OTOGL 283310 genome.wustl.edu 37 12 80730249 80730249 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343203.1 +1 model p.A1458S 1.000 321 0% 110 9.1% 0 - possibly_damaging(0.892) tolerated(0.58) neutral(0.356) HMMPfam_VWD,HMMSmart_SM00216 OTOGL 283310 genome.wustl.edu 37 12 80771733 80771733 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343203.1 +1 model p.R2220* 1.000 275 0% 89 21.3% 1 100% - - - HMMSmart_SM00041 PTPRQ 374462 genome.wustl.edu 37 12 80890086 80890086 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000266688 +1 known p.R683M 0.046 125 0% 41 29.3% 0 - benign(0.066) tolerated(0.06) neutral(0.327) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRQ 374462 genome.wustl.edu 37 12 80928802 80928802 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000266688 +1 known p.G991C 0.994 266 0% 185 17.8% 0 - possibly_damaging(0.888) deleterious(0.04) deleterious(0.696) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRQ 374462 genome.wustl.edu 37 12 80982018 80982018 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000266688 +1 known p.T1466A 0.999 318 0% 115 10.4% 0 - probably_damaging(0.974) tolerated(0.63) neutral(0.419) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRQ 374462 genome.wustl.edu 37 12 80982102 80982102 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000266688 +1 known p.A1494T 0.726 209 0% 83 19.3% 0 - benign(0.344) tolerated(0.81) neutral(0.109) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MYF6 4618 genome.wustl.edu 37 12 81101800 81101800 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002469.2 +1 reviewed p.R101H 1.000 50 0% 74 28.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain MYF5 4617 genome.wustl.edu 37 12 81110890 81110890 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005593.2 +1 validated p.Y16 1.000 33 0% 52 17.3% 0 - - - - HMMPfam_Basic,HMMSmart_BASIC ACSS3 79611 genome.wustl.edu 37 12 81528604 81528604 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024560.2 +1 validated p.L156M 1.000 233 0% 125 24.8% 1 0% probably_damaging(0.957) tolerated(0.06) deleterious(0.723) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ACSS3 79611 genome.wustl.edu 37 12 81536891 81536891 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024560.2 +1 validated p.A262 0.000 299 0% 205 29.3% 0 - - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like PPFIA2 8499 genome.wustl.edu 37 12 81675140 81675140 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003625.2 -1 reviewed p.Q1036H 0.933 194 0% 96 9.4% 0 - probably_damaging(0.958) deleterious(0) deleterious(0.846) HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain PPFIA2 8499 genome.wustl.edu 37 12 81839378 81839378 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003625.2 -1 reviewed p.A176V 1.000 417 0% 360 23.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TMTC2 160335 genome.wustl.edu 37 12 83359509 83359509 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152588.1 +1 provisional p.Q619* 1.000 133 0% 127 27.6% 6 33.3% - - - HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like SLC6A15 55117 genome.wustl.edu 37 12 85255607 85255607 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182767.4 -1 validated p.P666H 0.797 322 0.3% 66 21.2% 0 - benign(0.198) deleterious(0.02) neutral(0.402) NULL SLC6A15 55117 genome.wustl.edu 37 12 85255676 85255676 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182767.4 -1 validated p.N643S 1.000 316 0% 65 24.6% 0 - possibly_damaging(0.437) tolerated(0.15) neutral(0.383) HMMPfam_SNF LRRIQ1 84125 genome.wustl.edu 37 12 85492269 85492269 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079910.1 +1 validated p.G1008 0.974 308 0% 79 11.4% 0 - - - - superfamily_RNI-like NTS 4922 genome.wustl.edu 37 12 86272175 86272175 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006183.3 +1 reviewed p.S63I 0.908 214 0% 156 19.2% 1 0% unknown(0) deleterious(0.05) - HMMPfam_Pro-NT_NN CEP290 80184 genome.wustl.edu 37 12 88471474 88471474 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025114.3 -1 reviewed p.Q1862H 1.000 133 0% 63 12.7% 3 0% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL CEP290 80184 genome.wustl.edu 37 12 88508207 88508207 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025114.3 -1 reviewed p.R681I 1.000 436 0% 431 22% 0 - possibly_damaging(0.491) deleterious(0.01) deleterious(0.569) NULL TMTC3 160418 genome.wustl.edu 37 12 88560183 88560183 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181783.3 +1 reviewed p.W292R 1.000 487 0% 199 22.6% 3 33.3% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_DUF1736 POC1B 282809 genome.wustl.edu 37 12 89815023 89815023 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172240.1 -1 provisional p.I448 0.460 179 0% 72 18.1% 22 31.8% - - - NULL C12orf12 196477 genome.wustl.edu 37 12 91347329 91347329 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152638.2 -1 predicted p.S397 0.000 396 0% 650 12.2% 0 - - - - NULL KERA 11081 genome.wustl.edu 37 12 91449939 91449939 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007035.3 -1 reviewed p.F40 0.364 215 0.5% 69 20.3% 0 - - - - superfamily_SSF52058 LUM 4060 genome.wustl.edu 37 12 91502032 91502032 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002345.3 -1 reviewed p.A242V 0.986 389 0% 126 11.9% 187 0% benign(0.002) tolerated(0.2) neutral(0.049) HMMPfam_LRR_1,superfamily_L domain-like LUM 4060 genome.wustl.edu 37 12 91502635 91502635 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002345.3 -1 reviewed p.C41Y 1.000 407 0% 114 22.8% 127 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like DCN 1634 genome.wustl.edu 37 12 91552191 91552191 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001920.3 -1 reviewed p.Q140H 0.003 343 0% 211 19% 93 0% benign(0) tolerated(0.29) neutral(0.029) HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like EEA1 8411 genome.wustl.edu 37 12 93169824 93169824 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003566.3 -1 validated p.R1400H 1.000 249 0% 60 16.7% 11 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF EEA1 8411 genome.wustl.edu 37 12 93171759 93171759 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003566.3 -1 validated p.T1284M 1.000 467 0% 131 20.6% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL EEA1 8411 genome.wustl.edu 37 12 93210003 93210003 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003566.3 -1 validated p.K634 1.000 382 0% 136 14% 1 0% unknown(0) - - NULL CRADD 8738 genome.wustl.edu 37 12 94072588 94072588 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003805.3 +1 reviewed p.R13H 1.000 72 0% 63 14.3% 5 60% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain PLXNC1 10154 genome.wustl.edu 37 12 94613892 94613892 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005761.1 +1 provisional p.P552L 0.000 206 0% 93 21.5% 1 0% benign(0) tolerated(0.82) neutral(0.001) NULL PLXNC1 10154 genome.wustl.edu 37 12 94637758 94637758 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005761.1 +1 provisional p.I782S 1.000 679 0% 180 18.3% 1 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_TIG,HMMSmart_IPT TMCC3 57458 genome.wustl.edu 37 12 94976070 94976070 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020698.2 -1 validated p.A108V 0.993 393 0% 153 20.9% 9 22.2% benign(0.084) tolerated(0.55) neutral(0.013) HMMPfam_Tmemb_cc2 NR2C1 7181 genome.wustl.edu 37 12 95442955 95442955 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003297.2 -1 reviewed p.Q340H 1.000 329 0% 104 17.3% 12 50% probably_damaging(0.992) tolerated(0.11) deleterious(0.719) superfamily_Nuclear receptor ligand-binding domain VEZT 55591 genome.wustl.edu 37 12 95676153 95676153 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017599.3 +1 validated p.S354Y 1.000 296 0% 154 14.9% 15 13.3% possibly_damaging(0.85) deleterious(0) deleterious(0.772) NULL NTN4 59277 genome.wustl.edu 37 12 96104400 96104400 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021229.3 -1 validated p.K333N 1.000 203 0% 96 24% 17 52.9% possibly_damaging(0.946) tolerated(0.51) neutral(0.399) HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin NTN4 59277 genome.wustl.edu 37 12 96180838 96180838 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021229.3 -1 validated p.K155T 1.000 216 0% 269 13.4% 16 18.7% benign(0) tolerated(0.19) neutral(0.050) HMMPfam_Laminin_N,HMMSmart_SM00136 HAL 3034 genome.wustl.edu 37 12 96374582 96374582 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002108.2 -1 reviewed p.P449 1.000 393 0% 269 24.9% 0 - - - - HMMPfam_PAL,superfamily_L-Aspartase-like CDK17 5128 genome.wustl.edu 37 12 96707195 96707195 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002595.3 -1 reviewed p.G107 1.000 236 0% 188 23.9% 6 66.6% - - - NULL NEDD1 121441 genome.wustl.edu 37 12 97339612 97339612 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135175.1 +1 validated p.T606M 0.998 244 0% 79 17.7% 20 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ENSG00000206899 0 genome.wustl.edu 37 12 98115500 98115500 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000384172 +1 known NULL 0.430 193 0% 197 22.8% 0 - - - - - ENSG00000227825 0 genome.wustl.edu 37 12 98849817 98849817 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000370696 -1 known p.A27 1.000 272 0% 253 10.7% 0 - - - - HMMPfam_Na_H_Exchanger TMPO 7112 genome.wustl.edu 37 12 98938114 98938114 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032283.2 +1 reviewed p.T257I 1.000 253 0% 152 19.1% 22 45.4% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL SLC25A3 5250 genome.wustl.edu 37 12 98991780 98991780 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005888.3 +1 reviewed p.V143 0.982 409 0% 434 22.1% 347 42.3% - - - superfamily_Mitochondrial carrier,HMMPfam_Mito_carr IKBIP 121457 genome.wustl.edu 37 12 99007657 99007657 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201612.1 -1 provisional p.F253 0.818 369 0.5% 178 19.7% 20 30% - - - NULL IKBIP 121457 genome.wustl.edu 37 12 99007694 99007694 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201612.1 -1 provisional p.S241Y 0.002 364 0% 186 26.3% 20 30% possibly_damaging(0.658) tolerated(0.07) deleterious(0.551) NULL ANKS1B 56899 genome.wustl.edu 37 12 99638168 99638168 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152788.3 -1 validated p.D791Y 1.000 630 0% 246 23.2% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL FAM71C 196472 genome.wustl.edu 37 12 100042139 100042139 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153364.1 +1 predicted p.H63Y 0.134 152 0% 74 27% 0 - probably_damaging(0.999) tolerated(0.29) deleterious(0.519) NULL FAM71C 196472 genome.wustl.edu 37 12 100042419 100042419 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153364.1 +1 predicted p.S156L 0.006 73 0% 66 21.2% 0 - benign(0.002) tolerated(0.34) neutral(0.023) NULL UHRF1BP1L 23074 genome.wustl.edu 37 12 100476844 100476844 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015054.1 -1 validated p.L453I 0.996 464 0% 215 16.7% 5 0% possibly_damaging(0.882) tolerated(0.34) neutral(0.367) NULL ENSG00000238105 0 genome.wustl.edu 37 12 100552571 100552571 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429462 -1 known p.T124 0.000 122 0% 66 25.8% 1 0% - - - NULL GOLGA2P5 55592 genome.wustl.edu 37 12 100559912 100559912 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024261.1 -1 validated NULL 0.003 78 0% 39 23.1% 0 - - - - - SCYL2 55681 genome.wustl.edu 37 12 100727971 100727971 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017988.4 +1 provisional p.E597* 1.000 337 0% 224 20.1% 6 16.6% - - - superfamily_ARM repeat SCYL2 55681 genome.wustl.edu 37 12 100732875 100732875 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017988.4 +1 provisional p.Q905 1.000 200 0% 152 15.8% 16 12.5% - - - NULL NR1H4 9971 genome.wustl.edu 37 12 100934522 100934522 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005123.2 +1 provisional p.R331H 1.000 653 0.2% 353 22.4% 0 - probably_damaging(1) tolerated(0.26) deleterious(0.534) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain ANO4 121601 genome.wustl.edu 37 12 101336234 101336234 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178826.3 +1 validated p.R91I 1.000 245 0% 76 14.5% 0 - possibly_damaging(0.945) deleterious(0.01) deleterious(0.795) NULL ANO4 121601 genome.wustl.edu 37 12 101436111 101436111 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178826.3 +1 validated e10-1 1.000 404 0% 131 24.4% 0 - - - - - ANO4 121601 genome.wustl.edu 37 12 101505394 101505394 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178826.3 +1 validated p.A751T 1.000 361 0% 92 14.1% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_DUF590 SLC5A8 160728 genome.wustl.edu 37 12 101576679 101576679 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145913.3 -1 validated p.S356N 1.000 284 0% 96 19.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_SSF SLC5A8 160728 genome.wustl.edu 37 12 101576689 101576689 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145913.3 -1 validated p.V353M 1.000 259 0% 85 15.3% 0 - probably_damaging(1) tolerated(0.2) deleterious(0.549) HMMPfam_SSF SLC5A8 160728 genome.wustl.edu 37 12 101581219 101581219 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145913.3 -1 validated p.S303F 1.000 207 0% 57 22.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL UTP20 27340 genome.wustl.edu 37 12 101731941 101731941 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014503.2 +1 validated p.V1252I 1.000 299 0% 136 25.7% 1 0% benign(0.022) tolerated(0.71) neutral(0.003) superfamily_ARM repeat UTP20 27340 genome.wustl.edu 37 12 101766694 101766694 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014503.2 +1 validated p.L2277 0.996 499 0% 311 19% 5 20% - - - superfamily_ARM repeat ARL1 400 genome.wustl.edu 37 12 101789449 101789449 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001177.3 -1 reviewed e6-1 1.000 470 0.2% 210 24.8% 15 100% - - - - ARL1 400 genome.wustl.edu 37 12 101794854 101794854 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001177.3 -1 reviewed p.V108I 1.000 486 0% 263 24.7% 81 16% benign(0) tolerated(0.4) neutral(0.016) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases SPIC 121599 genome.wustl.edu 37 12 101880156 101880156 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152323.1 +1 provisional p.H118 0.991 254 0.4% 123 19.5% 0 - - - - HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785 GNPTAB 79158 genome.wustl.edu 37 12 102158799 102158799 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024312.4 -1 reviewed p.E632D 0.984 747 0% 327 21.1% 4 25% benign(0.106) tolerated(0.29) neutral(0.037) NULL GNPTAB 79158 genome.wustl.edu 37 12 102158940 102158940 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024312.4 -1 reviewed p.I585M 0.936 551 0% 281 11.7% 8 12.5% possibly_damaging(0.918) tolerated(0.06) deleterious(0.691) NULL DRAM1 55332 genome.wustl.edu 37 12 102315026 102315026 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018370.2 +1 reviewed p.N235 0.530 414 0% 138 18.8% 29 27.5% - - - NULL IGF1 3479 genome.wustl.edu 37 12 102811776 102811776 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111285.1 -1 reviewed p.Q136H 0.995 595 0% 351 24.5% 3 0% benign(0) tolerated(0.34) neutral(0.023) NULL C12orf42 374470 genome.wustl.edu 37 12 103696195 103696195 + Silent SNP G G A rs189742644 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099336.1 -1 validated p.P258 0.001 43 0% 45 35.6% 1 0% - - - NULL STAB2 55576 genome.wustl.edu 37 12 104122635 104122635 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017564.9 +1 reviewed p.D1648E 0.226 182 0% 55 21.8% 0 - benign(0.051) tolerated(0.39) neutral(0.019) HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1 NT5DC3 51559 genome.wustl.edu 37 12 104174084 104174084 + Nonsense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000447799 -1 known p.R37* 1.000 612 0% 396 19.4% 2 50% possibly_damaging(0.939) deleterious(0.02) deleterious(0.768) HMMPfam_5_nucleotid HSP90B1 7184 genome.wustl.edu 37 12 104335270 104335270 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003299.1 +1 provisional p.S392Y 0.996 375 0% 236 20.3% 518 40.5% benign(0.181) deleterious(0) neutral(0.461) superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90 TDG 6996 genome.wustl.edu 37 12 104376646 104376646 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003211.4 +1 reviewed p.G183E 0.024 226 0% 80 17.5% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UDG,superfamily_UDNA_glycsylseSF TDG 6996 genome.wustl.edu 37 12 104380758 104380758 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003211.4 +1 reviewed p.F375V 0.000 647 0.2% 241 7.9% 15 40% benign(0) tolerated(1) - NULL HCFC2 29915 genome.wustl.edu 37 12 104461804 104461804 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013320.2 +1 reviewed p.S131I 1.000 486 0% 626 21.1% 1 100% probably_damaging(0.991) deleterious(0) deleterious(0.889) superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2 CHST11 50515 genome.wustl.edu 37 12 105151281 105151281 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018413.5 +1 validated p.E253D 1.000 199 0% 149 20.1% 23 0% benign(0.313) tolerated(0.35) neutral(0.118) HMMPfam_Sulfotransfer_2 SLC41A2 84102 genome.wustl.edu 37 12 105321817 105321817 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032148.3 -1 validated p.I163M 0.881 447 0% 280 16.8% 6 50% probably_damaging(1) tolerated(0.28) deleterious(0.531) NULL ENSG00000179821 0 genome.wustl.edu 37 12 105371346 105371346 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000312876 -1 known p.I148T 0.997 54 0% 60 20% 0 - - - - HMMPfam_Filament KIAA1033 23325 genome.wustl.edu 37 12 105515918 105515918 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015275.1 +1 validated p.N230H 1.000 160 0% 139 22.3% 2 50% benign(0.208) tolerated(0.17) neutral(0.079) NULL NUAK1 9891 genome.wustl.edu 37 12 106466581 106466581 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014840.2 -1 validated p.K207R 1.000 172 0% 94 28.7% 4 0% benign(0.005) tolerated(0.5) neutral(0.010) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CKAP4 10970 genome.wustl.edu 37 12 106632820 106632820 + Missense_Mutation SNP C C A rs148031456 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006825.3 -1 validated p.K597N 1.000 189 0.5% 187 27.3% 177 45.7% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) NULL CKAP4 10970 genome.wustl.edu 37 12 106634058 106634058 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006825.3 -1 validated p.L185I 0.139 76 0% 138 21.7% 106 42.4% benign(0.024) tolerated(0.24) neutral(0.038) NULL TCP11L2 255394 genome.wustl.edu 37 12 106734603 106734603 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152772.1 +1 provisional e8-1 1.000 287 0% 106 23.6% 1 100% - - - - TCP11L2 255394 genome.wustl.edu 37 12 106734658 106734658 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152772.1 +1 provisional p.E399D 0.964 411 0% 147 18.4% 7 71.4% probably_damaging(0.993) tolerated(0.12) deleterious(0.711) HMMPfam_Tcp11 RFX4 5992 genome.wustl.edu 37 12 107105268 107105268 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213594.1 +1 reviewed p.T324 1.000 417 0% 197 24.4% 0 - - - - NULL RIC8B 55188 genome.wustl.edu 37 12 107208791 107208791 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018157.2 +1 validated p.K150N 1.000 229 0% 91 18.7% 3 66.6% possibly_damaging(0.513) tolerated(0.49) neutral(0.183) superfamily_ARM-type_fold,HMMPfam_Ric8 MTERFD3 80298 genome.wustl.edu 37 12 107372394 107372394 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033050.1 -1 validated p.F33L 0.001 388 0% 294 17.3% 6 50% unknown(0) deleterious(0) - NULL CRY1 1407 genome.wustl.edu 37 12 107393423 107393423 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004075.3 -1 validated p.R348H 1.000 166 0.6% 92 20.7% 10 50% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain BTBD11 121551 genome.wustl.edu 37 12 108029083 108029083 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018072.1 +1 validated p.L885 1.000 212 0% 66 33.3% 0 - - - - NULL PRDM4 11108 genome.wustl.edu 37 12 108128097 108128097 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012406.3 -1 reviewed p.E766* 1.000 781 0% 254 20.9% 17 52.9% - - - NULL PRDM4 11108 genome.wustl.edu 37 12 108145247 108145247 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012406.3 -1 reviewed p.L357 1.000 185 0% 102 19.6% 9 33.3% - - - NULL SART3 9733 genome.wustl.edu 37 12 108926028 108926028 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014706.3 -1 reviewed p.E547K 0.999 105 1% 55 16.4% 34 35.2% benign(0.099) tolerated(0.44) neutral(0.020) superfamily_TPR-like SSH1 54434 genome.wustl.edu 37 12 109181869 109181869 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018984.3 -1 validated p.L1015 0.000 244 0% 225 22.2% 7 42.8% - - - NULL SSH1 54434 genome.wustl.edu 37 12 109192889 109192889 + Silent SNP G G A rs184372660 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018984.3 -1 validated p.F412 0.653 167 0% 119 23.5% 1 0% - - - HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II SSH1 54434 genome.wustl.edu 37 12 109210915 109210915 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018984.3 -1 validated p.A100 1.000 142 0% 96 19.8% 1 0% - - - NULL USP30 84749 genome.wustl.edu 37 12 109523641 109523641 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032663.3 +1 validated p.Q487* 1.000 137 0% 79 27.8% 28 46.4% - - - HMMPfam_UCH,superfamily_SSF54001 ACACB 32 genome.wustl.edu 37 12 109617866 109617866 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093.3 +1 reviewed p.V598I 1.000 116 0% 58 29.3% 1 0% probably_damaging(0.973) tolerated(0.17) deleterious(0.474) HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like ACACB 32 genome.wustl.edu 37 12 109625910 109625910 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093.3 +1 reviewed p.A696V 1.000 225 0% 153 20.9% 3 0% possibly_damaging(0.951) deleterious(0.01) deleterious(0.800) HMMPfam_Biotin_carb_C,superfamily_Rudiment single hybrid motif ACACB 32 genome.wustl.edu 37 12 109674979 109674979 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093.3 +1 reviewed p.D1486N 1.000 96 0% 56 28.6% 1 0% probably_damaging(0.998) tolerated(0.09) deleterious(0.771) HMMPfam_ACC_central ACACB 32 genome.wustl.edu 37 12 109703292 109703292 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093.3 +1 reviewed p.T2404 1.000 38 0% 29 17.2% 4 0% - - - NULL FOXN4 121643 genome.wustl.edu 37 12 109719221 109719221 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213596.2 -1 validated p.A429T 1.000 87 0% 88 21.6% 0 - probably_damaging(0.999) tolerated(0.08) deleterious(0.790) NULL FOXN4 121643 genome.wustl.edu 37 12 109728091 109728091 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213596.2 -1 validated p.R29 1.000 24 0% 35 25.7% 0 - - - - NULL MYO1H 283446 genome.wustl.edu 37 12 109872871 109872871 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101421.3 +1 provisional p.T692N 1.000 532 0% 271 20.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases KCTD10 83892 genome.wustl.edu 37 12 109894034 109894034 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031954.3 -1 provisional p.K204N 1.000 334 0% 243 25.1% 10 30% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL UBE3B 89910 genome.wustl.edu 37 12 109936039 109936039 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130466.2 +1 reviewed p.R274H 1.000 383 0% 154 11.7% 8 12.5% possibly_damaging(0.782) deleterious(0.04) deleterious(0.642) NULL GIT2 9815 genome.wustl.edu 37 12 110397694 110397694 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057169.3 -1 reviewed p.A353T 1.000 200 0% 89 23.6% 23 21.7% probably_damaging(0.962) deleterious(0.01) deleterious(0.810) HMMPfam_GIT_SHD,HMMSmart_SM00555 GIT2 9815 genome.wustl.edu 37 12 110405301 110405301 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057169.3 -1 reviewed p.K242N 1.000 506 0% 181 16.6% 18 33.3% possibly_damaging(0.803) tolerated(0.13) deleterious(0.555) superfamily_Ankyrin repeat ANKRD13A 88455 genome.wustl.edu 37 12 110475266 110475266 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033121.1 +1 validated p.L560 0.991 85 0% 54 31.5% 22 31.8% - - - HMMSmart_SM00726 C12orf76 400073 genome.wustl.edu 37 12 110480172 110480172 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207435.1 -1 predicted p.R131I 0.000 155 0% 87 17.2% 9 33.3% unknown(0) - - NULL CCDC63 160762 genome.wustl.edu 37 12 111317865 111317865 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152591.1 +1 provisional p.E215D 1.000 199 0% 96 22.9% 0 - probably_damaging(0.996) tolerated(0.19) deleterious(0.511) NULL CUX2 23316 genome.wustl.edu 37 12 111731341 111731341 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015267.3 +1 validated p.T176 1.000 283 0% 234 16.7% 0 - - - - NULL SH2B3 10019 genome.wustl.edu 37 12 111884556 111884556 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005475.2 +1 reviewed e2-1 1.000 128 0% 103 24.3% 1 100% - - - - ACAD10 80724 genome.wustl.edu 37 12 112174699 112174699 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136538.1 +1 reviewed p.Y566* 1.000 300 0% 173 24.9% 5 40% - - - superfamily_Protein kinase-like (PK-like) ACAD10 80724 genome.wustl.edu 37 12 112182591 112182591 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136538.1 +1 reviewed p.T651M 0.003 120 0% 86 16.3% 7 14.2% possibly_damaging(0.859) tolerated(0.13) deleterious(0.585) NULL ACAD10 80724 genome.wustl.edu 37 12 112182771 112182771 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136538.1 +1 reviewed p.P711H 0.997 58 0% 46 19.6% 8 25% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like MAPKAPK5 8550 genome.wustl.edu 37 12 112305415 112305415 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139078.1 +1 reviewed p.V76F 1.000 403 0% 143 21% 14 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TMEM116 89894 genome.wustl.edu 37 12 112374574 112374574 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138341.1 -1 provisional p.T78 0.559 380 0% 135 14.1% 15 13.3% - - - NULL ERP29 10961 genome.wustl.edu 37 12 112460347 112460347 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006817.3 +1 reviewed p.R226M 1.000 97 0% 63 14.3% 370 35.6% benign(0.003) deleterious(0.03) neutral(0.364) HMMPfam_ERp29,superfamily_ERP29_C NAA25 80018 genome.wustl.edu 37 12 112513497 112513497 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024953.3 -1 reviewed p.R254H 1.000 315 0% 160 22.5% 3 33.3% possibly_damaging(0.861) tolerated(0.09) deleterious(0.629) superfamily_TPR-like TRAFD1 10906 genome.wustl.edu 37 12 112589756 112589756 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143906.1 +1 validated p.Q477H 0.698 202 0% 114 24.6% 68 27.9% probably_damaging(0.982) deleterious(0) deleterious(0.871) NULL C12orf51 283450 genome.wustl.edu 37 12 112607326 112607326 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109662.2 -1 validated p.G3641 0.975 34 0% 35 14.3% 5 0% - - - HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain C12orf51 283450 genome.wustl.edu 37 12 112673321 112673321 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109662.2 -1 validated p.D1482E 0.998 89 0% 28 17.9% 2 50% possibly_damaging(0.806) - - NULL C12orf51 283450 genome.wustl.edu 37 12 112673466 112673466 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109662.2 -1 validated p.A1434V 1.000 136 0% 38 21.1% 0 - probably_damaging(0.98) - - NULL RPH3A 22895 genome.wustl.edu 37 12 113332452 113332452 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143854.1 +1 validated p.P615 1.000 258 0% 61 24.6% 0 - - - - HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) OAS3 4940 genome.wustl.edu 37 12 113384576 113384576 + Missense_Mutation SNP C C T rs192393759 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006187.2 +1 reviewed p.T222M 0.029 79 0% 69 24.6% 20 20% benign(0.015) tolerated(0.1) neutral(0.287) HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain OAS2 4939 genome.wustl.edu 37 12 113425160 113425160 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032731.1 +1 reviewed p.C165 0.000 98 0% 51 31.4% 6 16.6% - - - NULL RASAL1 8437 genome.wustl.edu 37 12 113542046 113542046 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004658.1 -1 reviewed p.A629T 1.000 16 0% 29 20.7% 10 30% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like RASAL1 8437 genome.wustl.edu 37 12 113553445 113553445 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004658.1 -1 reviewed p.R333Q 0.997 77 1.3% 78 32.1% 12 50% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP DDX54 79039 genome.wustl.edu 37 12 113612469 113612469 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111322.1 -1 reviewed p.K348N 1.000 54 0% 42 23.8% 106 49% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_P-loop containing nucleoside triphosphate hydrolases IQCD 115811 genome.wustl.edu 37 12 113645693 113645693 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138451.1 -1 provisional p.E93 0.916 435 0% 318 20.1% 4 50% - - - NULL TPCN1 53373 genome.wustl.edu 37 12 113731136 113731136 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143819.1 +1 validated p.M844I 1.000 142 0% 105 21% 22 18.1% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL SLC24A6 80024 genome.wustl.edu 37 12 113748143 113748143 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024959.2 -1 validated p.G385C 0.742 82 0% 51 39.2% 29 34.4% probably_damaging(0.973) deleterious(0.01) deleterious(0.821) NULL PLBD2 196463 genome.wustl.edu 37 12 113810530 113810530 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173542.3 +1 validated p.R154K 0.980 139 0% 104 19.2% 19 52.6% benign(0.001) tolerated(0.64) neutral(0.003) HMMPfam_Phospholip_B SDS 10993 genome.wustl.edu 37 12 113836340 113836340 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006843.2 -1 reviewed p.P135 0.997 73 0% 71 26.8% 7 0% - - - HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu SDSL 113675 genome.wustl.edu 37 12 113875852 113875852 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138432.2 +1 provisional p.Q320* 0.276 106 0% 65 27.7% 83 32.5% - - - superfamily_PyrdxlP-dep_enz_bsu RBM19 9904 genome.wustl.edu 37 12 114358446 114358446 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016196.3 -1 reviewed p.E785 1.000 219 0% 152 23.7% 31 32.2% - - - HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD MED13L 23389 genome.wustl.edu 37 12 116429283 116429283 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015335.3 -1 validated p.R1159H 1.000 165 0% 63 19% 1 0% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL MED13L 23389 genome.wustl.edu 37 12 116446786 116446786 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015335.3 -1 validated p.K478E 1.000 959 0% 337 19.9% 0 - probably_damaging(0.971) deleterious(0) deleterious(0.857) NULL MED13L 23389 genome.wustl.edu 37 12 116457130 116457130 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015335.3 -1 validated p.G303V 1.000 203 0% 51 17.6% 2 50% probably_damaging(0.986) tolerated(0.38) neutral(0.452) NULL C12orf49 79794 genome.wustl.edu 37 12 117155699 117155699 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024738.1 -1 predicted e5-1 1.000 127 0% 80 16.3% 0 - - - - - C12orf49 79794 genome.wustl.edu 37 12 117158153 117158153 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024738.1 -1 predicted p.G123V 1.000 75 0% 50 24% 11 27.2% probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_DUF2054 FBXW8 26259 genome.wustl.edu 37 12 117365931 117365931 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153348.2 +1 reviewed p.Q141R 1.000 346 0% 167 25.1% 7 28.5% probably_damaging(0.999) tolerated(0.11) deleterious(0.762) HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain NOS1 4842 genome.wustl.edu 37 12 117680508 117680508 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000620.2 -1 reviewed p.L989 0.999 280 0% 111 9.9% 2 100% - - - superfamily_Riboflavin synthase domain-like VSIG10 54621 genome.wustl.edu 37 12 118533534 118533534 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019086.5 -1 validated p.T55 1.000 156 0.6% 121 21.5% 8 12.5% - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin SRRM4 84530 genome.wustl.edu 37 12 119554806 119554806 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194286.2 +1 validated p.R144* 0.998 253 0% 117 24.8% 0 - - - - NULL CIT 11113 genome.wustl.edu 37 12 120138591 120138591 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007174.1 -1 validated p.R1819H 1.000 173 0% 102 27.5% 13 61.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_CNH,HMMSmart_SM00036 GCN1L1 10985 genome.wustl.edu 37 12 120572101 120572101 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006836.1 -1 validated p.H2437 0.098 146 0% 143 25.2% 67 46.2% - - - HMMPfam_HEAT,superfamily_ARM repeat GCN1L1 10985 genome.wustl.edu 37 12 120587477 120587477 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006836.1 -1 validated p.H1493 0.941 60 0% 50 14% 14 64.2% - - - superfamily_ARM repeat GCN1L1 10985 genome.wustl.edu 37 12 120596420 120596420 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006836.1 -1 validated e25-1 1.000 80 0% 45 17.8% 1 100% - - - - GCN1L1 10985 genome.wustl.edu 37 12 120613556 120613556 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006836.1 -1 validated p.I345 1.000 98 0% 73 13.7% 10 60% - - - superfamily_ARM repeat PXN 5829 genome.wustl.edu 37 12 120659517 120659517 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080855.1 -1 validated p.R247H 0.940 99 0% 118 28.8% 30 53.3% benign(0.001) tolerated(0.18) neutral(0.056) HMMPfam_Paxillin PXN 5829 genome.wustl.edu 37 12 120660436 120660436 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080855.1 -1 validated p.R204Q 1.000 88 0% 76 22.4% 26 53.8% possibly_damaging(0.657) tolerated(0.19) neutral(0.281) HMMPfam_Paxillin SIRT4 23409 genome.wustl.edu 37 12 120741376 120741376 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012240.1 +1 reviewed p.S4 0.119 82 0% 64 15.6% 2 0% - - - NULL MSI1 4440 genome.wustl.edu 37 12 120783433 120783433 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002442.2 -1 reviewed p.G350 0.950 202 0% 254 24% 0 - - - - NULL MSI1 4440 genome.wustl.edu 37 12 120800929 120800929 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002442.2 -1 reviewed p.R107* 1.000 295 0% 305 17.7% 0 - - - - NULL COX6A1 1337 genome.wustl.edu 37 12 120875966 120875966 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004373.2 +1 reviewed p.L13M 0.450 70 0% 57 21.1% 922 43.8% probably_damaging(0.977) deleterious(0.03) deleterious(0.783) NULL RNF10 9921 genome.wustl.edu 37 12 120995245 120995245 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014868.4 +1 reviewed p.S269Y 1.000 448 0% 164 23.2% 116 42.2% probably_damaging(0.989) tolerated(0.11) deleterious(0.711) superfamily_RING/U-box RNF10 9921 genome.wustl.edu 37 12 121001211 121001211 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014868.4 +1 reviewed p.T439I 0.027 275 0% 113 23% 126 28.5% benign(0.001) tolerated(0.17) neutral(0.059) NULL RNF10 9921 genome.wustl.edu 37 12 121013664 121013664 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014868.4 +1 reviewed p.P757H 1.000 214 0% 130 28.5% 251 34.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL UNC119B 84747 genome.wustl.edu 37 12 121157829 121157829 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080533.1 +1 provisional p.G250 1.000 271 0% 230 22.2% 6 16.6% - - - NULL ACADS 35 genome.wustl.edu 37 12 121176213 121176213 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000017.2 +1 reviewed p.S252I 1.000 75 0% 72 23.6% 75 38.6% probably_damaging(0.971) deleterious(0) deleterious(0.857) superfamily_AcylCoA_dehyd_NM P2RX7 5027 genome.wustl.edu 37 12 121598722 121598722 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002562.4 +1 reviewed p.T127 0.009 468 0% 165 10.9% 1 0% - - - HMMPfam_P2X_receptor RNF34 80196 genome.wustl.edu 37 12 121855494 121855494 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194271.1 +1 reviewed p.R139H 0.999 344 0.3% 143 26.6% 23 47.8% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL KDM2B 84678 genome.wustl.edu 37 12 121880351 121880351 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032590.4 -1 reviewed p.L965M 1.000 63 0% 80 31.2% 11 27.2% probably_damaging(0.996) tolerated(0.24) deleterious(0.499) NULL TMEM120B 144404 genome.wustl.edu 37 12 122188305 122188305 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080825.2 +1 validated p.L109I 1.000 434 0% 365 10.7% 8 37.5% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_TMPIT TMEM120B 144404 genome.wustl.edu 37 12 122190074 122190074 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080825.2 +1 validated p.L136M 1.000 267 0% 241 22.8% 13 38.4% benign(0.014) tolerated(0.16) neutral(0.060) HMMPfam_TMPIT SETD1B 23067 genome.wustl.edu 37 12 122255115 122255115 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015048.1 +1 validated p.V964 0.996 43 0% 59 22% 14 50% - - - NULL SETD1B 23067 genome.wustl.edu 37 12 122261654 122261654 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015048.1 +1 validated p.P1680 1.000 50 2% 65 26.2% 11 54.5% - - - NULL SETD1B 23067 genome.wustl.edu 37 12 122265969 122265969 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015048.1 +1 validated p.S1864N 1.000 129 0% 102 19.6% 34 38.2% unknown(0) - - HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199 HPD 3242 genome.wustl.edu 37 12 122277716 122277716 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002150.2 -1 reviewed p.L367R 0.999 125 0% 142 13.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PSMD9 5715 genome.wustl.edu 37 12 122340962 122340962 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002813.4 +1 reviewed p.Q168H 0.049 370 0% 203 25.6% 149 35.5% benign(0.009) tolerated(0.14) neutral(0.250) HMMSmart_SM00228,superfamily_PDZ domain-like WDR66 144406 genome.wustl.edu 37 12 122380855 122380855 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144668.4 +1 validated p.E389K 0.001 181 0% 87 25.3% 3 33.3% benign(0.119) tolerated(0.71) neutral(0.011) superfamily_WD40 repeat-like WDR66 144406 genome.wustl.edu 37 12 122392135 122392135 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144668.4 +1 validated p.R477H 0.009 238 0.4% 104 25% 3 66.6% possibly_damaging(0.92) tolerated(0.37) neutral(0.390) superfamily_WD40 repeat-like MLXIP 22877 genome.wustl.edu 37 12 122615476 122615476 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000319080 +1 known p.F332 1.000 241 0% 197 19.8% 9 33.3% - - - NULL MLXIP 22877 genome.wustl.edu 37 12 122623378 122623378 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000319080 +1 known p.L801I 1.000 88 0% 129 20.9% 9 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL IL31 386653 genome.wustl.edu 37 12 122657060 122657060 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014336.1 -1 validated p.E132* 0.000 578 0% 342 21.1% 0 - - - - NULL LRRC43 254050 genome.wustl.edu 37 12 122687873 122687873 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098519.1 +1 validated p.A619T 0.000 81 0% 120 23.3% 0 - benign(0.039) tolerated(0.47) neutral(0.013) NULL DIABLO 56616 genome.wustl.edu 37 12 122693123 122693123 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019887.4 -1 reviewed p.G175 0.998 108 0% 133 21.8% 118 38.9% - - - superfamily_Smac/diablo,HMMPfam_Smac_DIABLO VPS33A 65082 genome.wustl.edu 37 12 122717464 122717464 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022916.4 -1 validated p.R498W 1.000 68 0% 76 25% 24 20.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sec1,superfamily_Sec1-like KNTC1 9735 genome.wustl.edu 37 12 123028173 123028173 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014708.4 +1 reviewed p.A184S 0.986 277 0% 123 26.8% 0 - unknown(0) tolerated(0.47) - NULL KNTC1 9735 genome.wustl.edu 37 12 123070282 123070282 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014708.4 +1 reviewed p.V1212M 0.500 587 0% 595 25.7% 4 50% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) NULL HCAR2 338442 genome.wustl.edu 37 12 123187090 123187090 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177551.3 -1 validated p.S247 0.570 283 0% 199 14.1% 2 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 ABCB9 23457 genome.wustl.edu 37 12 123425415 123425415 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019625.3 -1 reviewed p.R503Q 0.913 23 4.3% 26 26.9% 5 20% benign(0.02) tolerated(0.57) neutral(0.007) superfamily_P-loop containing nucleoside triphosphate hydrolases LOC100288239 100288239 genome.wustl.edu 37 12 123435021 123435021 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343220.1 +1 model p.D272N 0.923 64 0% 70 15.7% 2 50% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) NULL ARL6IP4 51329 genome.wustl.edu 37 12 123466509 123466509 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018694.2 +1 validated p.T282A 1.000 111 0% 127 27.6% 651 42.8% probably_damaging(0.987) tolerated(0.08) deleterious(0.736) HMMPfam_SR-25 ARL6IP4 51329 genome.wustl.edu 37 12 123467037 123467037 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018694.2 +1 validated p.E326 1.000 248 0% 318 11.3% 723 24.4% - - - HMMPfam_SR-25 PITPNM2 57605 genome.wustl.edu 37 12 123471283 123471283 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020845.2 -1 validated p.N1169K 1.000 30 0% 36 22.2% 6 33.3% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like PITPNM2 57605 genome.wustl.edu 37 12 123475134 123475134 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020845.2 -1 validated p.S843A 1.000 30 0% 53 18.9% 2 50% possibly_damaging(0.944) deleterious(0.02) deleterious(0.772) HMMPfam_DDHD PITPNM2 57605 genome.wustl.edu 37 12 123519112 123519112 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020845.2 -1 validated p.P9H 1.000 139 0% 96 25% 1 0% possibly_damaging(0.609) deleterious(0.02) deleterious(0.594) HMMPfam_IP_trans,superfamily_Bet v1-like MPHOSPH9 10198 genome.wustl.edu 37 12 123648503 123648503 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022782.2 -1 validated p.T816A 0.560 303 0% 186 12.9% 11 54.5% benign(0.001) deleterious(0) neutral(0.445) NULL MPHOSPH9 10198 genome.wustl.edu 37 12 123648595 123648595 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022782.2 -1 validated p.S785F 0.991 371 0% 242 24.4% 9 22.2% probably_damaging(0.96) deleterious(0) deleterious(0.848) NULL SBNO1 55206 genome.wustl.edu 37 12 123798257 123798257 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018183.3 -1 validated p.N1043D 1.000 221 0% 89 18% 2 100% possibly_damaging(0.95) tolerated(0.35) neutral(0.414) NULL SBNO1 55206 genome.wustl.edu 37 12 123812288 123812288 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018183.3 -1 validated p.E501* 1.000 179 0% 90 20% 3 33.3% - - - NULL RILPL1 353116 genome.wustl.edu 37 12 124008151 124008151 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178314.3 -1 validated p.Q117H 1.000 79 0% 68 22.1% 14 14.2% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_Jnk-SapK_ap_N TCTN2 79867 genome.wustl.edu 37 12 124163817 124163817 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024809.3 +1 validated p.V182A 0.888 580 0% 407 21.9% 14 42.8% benign(0.01) deleterious(0.03) neutral(0.365) HMMPfam_DUF1619 ATP6V0A2 23545 genome.wustl.edu 37 12 124212355 124212355 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012463.3 +1 reviewed p.G183* 1.000 387 0% 175 25.1% 5 20% - - - HMMPfam_V_ATPase_I DNAH10 196385 genome.wustl.edu 37 12 124270319 124270319 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.H358 0.002 102 0% 105 14.3% 0 - - - - HMMPfam_DHC_N1 DNAH10 196385 genome.wustl.edu 37 12 124341776 124341776 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.Y2086 0.193 172 0% 157 20.4% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH10 196385 genome.wustl.edu 37 12 124356032 124356032 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.T2438 0.943 256 0% 137 21.2% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH10 196385 genome.wustl.edu 37 12 124371815 124371815 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.A2866T 1.000 151 0% 117 27.4% 0 - possibly_damaging(0.943) tolerated(0.16) neutral(0.447) NULL DNAH10 196385 genome.wustl.edu 37 12 124395180 124395180 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.Y3247* 1.000 316 0% 211 27% 0 - - - - NULL DNAH10 196385 genome.wustl.edu 37 12 124403256 124403256 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.A3638S 0.993 144 0% 99 23.2% 0 - benign(0.034) tolerated(0.5) neutral(0.012) NULL DNAH10 196385 genome.wustl.edu 37 12 124416551 124416551 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207437.3 +1 validated p.G4280R 1.000 152 0.7% 178 26.4% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Dynein_heavy CCDC92 80212 genome.wustl.edu 37 12 124421901 124421901 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025140.1 -1 provisional p.R234W 1.000 95 0% 131 25.2% 27 44.4% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL NCOR2 9612 genome.wustl.edu 37 12 124820029 124820029 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006312.3 -1 validated p.G2096C 1.000 57 0% 76 19.7% 32 18.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL NCOR2 9612 genome.wustl.edu 37 12 124862871 124862871 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006312.3 -1 validated p.E693D 1.000 235 0% 198 25.3% 18 50% unknown(0) tolerated(0.18) - NULL SCARB1 949 genome.wustl.edu 37 12 125284743 125284743 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005505.4 -1 validated p.P352L 1.000 261 0% 214 17.3% 25 16% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_CD36 SCARB1 949 genome.wustl.edu 37 12 125302153 125302153 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005505.4 -1 validated p.S76I 0.000 116 0% 76 25% 19 57.8% benign(0.324) tolerated(0.1) neutral(0.388) HMMPfam_CD36 DHX37 57647 genome.wustl.edu 37 12 125441308 125441308 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032656.2 -1 reviewed p.H794 0.772 39 0% 52 26.9% 41 43.9% - - - HMMPfam_HA2,superfamily_SSF52540 TMEM132B 114795 genome.wustl.edu 37 12 126138595 126138595 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052907.2 +1 provisional p.K859T 0.968 155 0% 71 32.4% 0 - possibly_damaging(0.804) tolerated(0.75) neutral(0.304) NULL TMEM132C 92293 genome.wustl.edu 37 12 128899622 128899622 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136103.2 +1 provisional p.R32Q 0.816 75 0% 68 25% 0 - possibly_damaging(0.474) tolerated(0.64) neutral(0.160) NULL TMEM132C 92293 genome.wustl.edu 37 12 128900025 128900025 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136103.2 +1 provisional p.Q166 0.985 62 0% 37 24.3% 1 0% - - - NULL SLC15A4 121260 genome.wustl.edu 37 12 129278683 129278683 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000376744 -1 known p.A596V 0.001 131 0% 76 15.8% 29 41.3% - - - NULL TMEM132D 121256 genome.wustl.edu 37 12 129558635 129558635 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133448.2 -1 validated p.D1029Y 0.060 331 0% 222 14.9% 0 - possibly_damaging(0.947) deleterious(0.02) deleterious(0.774) NULL TMEM132D 121256 genome.wustl.edu 37 12 130185066 130185066 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133448.2 -1 validated p.K86T 0.972 167 0% 136 22.8% 0 - probably_damaging(0.971) tolerated(0.07) deleterious(0.732) NULL FZD10 11211 genome.wustl.edu 37 12 130649097 130649097 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007197.2 +1 reviewed p.R537H 0.963 40 0% 80 27.5% 6 0% possibly_damaging(0.884) deleterious(0) deleterious(0.789) HMMPfam_Frizzled RIMBP2 23504 genome.wustl.edu 37 12 130926790 130926790 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015347.4 -1 validated p.A352 0.773 339 0% 291 19.9% 3 100% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III GPR133 283383 genome.wustl.edu 37 12 131476926 131476926 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198827.3 +1 validated p.N319H 0.231 238 0% 261 10.7% 0 - probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL ULK1 8408 genome.wustl.edu 37 12 132380201 132380201 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003565.2 +1 validated p.S56Y 0.999 128 0% 120 24.2% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PUS1 80324 genome.wustl.edu 37 12 132426431 132426431 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025215.5 +1 reviewed p.T380I 0.999 38 0% 38 18.4% 47 14.8% benign(0.429) tolerated(0.12) neutral(0.400) NULL EP400 57634 genome.wustl.edu 37 12 132479440 132479440 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015409.3 +1 validated p.E921D 1.000 457 0% 234 13.2% 3 33.3% unknown(0) - - superfamily_SSF52540 EP400 57634 genome.wustl.edu 37 12 132514701 132514701 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015409.3 +1 validated p.Q1917* 1.000 383 0% 349 17.5% 6 0% - - - HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 EP400 57634 genome.wustl.edu 37 12 132516589 132516589 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015409.3 +1 validated p.A1948V 1.000 268 0% 252 21% 8 12.5% unknown(0) - - HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 DDX51 317781 genome.wustl.edu 37 12 132625048 132625048 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175066.3 -1 validated p.D531 0.000 101 0% 135 24.4% 22 4.5% - - - HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540 GALNT9 50614 genome.wustl.edu 37 12 132681657 132681657 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000328957 -1 known p.H603Y 0.994 111 0.9% 99 10.1% 0 - possibly_damaging(0.65) deleterious(0) deleterious(0.672) NULL GALNT9 50614 genome.wustl.edu 37 12 132683804 132683804 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000328957 -1 known p.S471I 1.000 47 2.1% 55 25.5% 0 - possibly_damaging(0.782) tolerated(0.13) deleterious(0.545) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins FBRSL1 57666 genome.wustl.edu 37 12 133148873 133148873 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142641.1 +1 validated e10-1 1.000 135 0% 84 28.6% 4 75% - - - - FBRSL1 57666 genome.wustl.edu 37 12 133153435 133153435 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142641.1 +1 validated p.L627 1.000 29 0% 60 15% 41 51.2% - - - NULL FBRSL1 57666 genome.wustl.edu 37 12 133158844 133158844 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142641.1 +1 validated p.E774 0.527 37 0% 48 16.7% 20 25% - - - NULL POLE 5426 genome.wustl.edu 37 12 133202900 133202900 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006231.2 -1 validated p.L2112M 1.000 41 0% 63 25.4% 43 58.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL POLE 5426 genome.wustl.edu 37 12 133249237 133249237 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006231.2 -1 validated p.S554 0.992 218 0% 183 21.3% 13 15.3% - - - HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672 POLE 5426 genome.wustl.edu 37 12 133253151 133253151 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006231.2 -1 validated p.S297F 1.000 197 0% 178 21.3% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold POLE 5426 genome.wustl.edu 37 12 133257825 133257825 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006231.2 -1 validated p.L35M 1.000 180 0% 236 26.7% 1 100% benign(0.201) tolerated(0.15) neutral(0.260) NULL POLE 5426 genome.wustl.edu 37 12 133257855 133257855 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006231.2 -1 validated p.A25T 0.995 156 0% 222 24.3% 0 - benign(0) tolerated(1) - NULL CHFR 55743 genome.wustl.edu 37 12 133446260 133446260 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000266880 -1 known p.A188 0.997 183 0% 126 19.8% 6 0% - - - NULL ZNF605 100289635 genome.wustl.edu 37 12 133502497 133502497 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000360187 -1 known p.S463N 0.864 209 0% 130 8.5% 0 - possibly_damaging(0.661) tolerated(0.7) neutral(0.236) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF10 7556 genome.wustl.edu 37 12 133732721 133732721 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015394.4 +1 reviewed p.E297* 0.095 261 0% 81 30.9% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF268 10795 genome.wustl.edu 37 12 133779495 133779495 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003415.2 +1 validated p.R408K 0.400 247 0% 75 18.7% 2 0% probably_damaging(0.984) tolerated(0.63) neutral(0.434) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF268 10795 genome.wustl.edu 37 12 133780300 133780300 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003415.2 +1 validated p.T676 0.261 383 0% 99 25.3% 5 40% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF268 10795 genome.wustl.edu 37 12 133780923 133780923 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003415.2 +1 validated p.R884I 1.000 343 0% 94 18.1% 11 27.2% probably_damaging(0.999) tolerated(0.17) deleterious(0.549) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF268 10795 genome.wustl.edu 37 12 133781091 133781091 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003415.2 +1 validated p.R940I 1.000 170 0% 46 19.6% 8 50% possibly_damaging(0.913) tolerated(0.14) deleterious(0.614) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TPTE2 93492 genome.wustl.edu 37 13 20077364 20077364 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199254.2 -1 validated p.S4I 0.042 813 0.1% 611 21.3% 0 - probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL MPHOSPH8 54737 genome.wustl.edu 37 13 20244448 20244448 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017520.3 +1 validated p.P801L 1.000 688 0% 368 22.6% 31 29% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZMYM5 9205 genome.wustl.edu 37 13 20398719 20398719 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142684.1 -1 validated p.S636 1.000 497 0% 308 25.3% 3 33.3% - - - NULL ZMYM5 9205 genome.wustl.edu 37 13 20412928 20412928 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142684.1 -1 validated p.G262* 1.000 698 0% 268 16.8% 4 50% - - - HMMPfam_zf-FCS,HMMSmart_SM00746 ZMYM2 7750 genome.wustl.edu 37 13 20593749 20593749 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003453.2 +1 validated p.M525I 1.000 327 0.3% 197 24.4% 12 33.3% benign(0) tolerated(0.49) neutral(0.011) NULL ZMYM2 7750 genome.wustl.edu 37 13 20632817 20632817 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003453.2 +1 validated p.H866Y 1.000 237 0% 90 14.4% 33 27.2% possibly_damaging(0.915) deleterious(0.01) deleterious(0.772) NULL ZMYM2 7750 genome.wustl.edu 37 13 20657110 20657110 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003453.2 +1 validated p.T1253M 1.000 340 0.6% 183 26.8% 44 20.4% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL GJA3 2700 genome.wustl.edu 37 13 20717413 20717413 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021954.3 -1 reviewed p.S5 1.000 58 0% 79 15.2% 1 0% - - - HMMPfam_Connexin GJB6 10804 genome.wustl.edu 37 13 20796939 20796939 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001110219.2 -1 reviewed p.T227 0.000 833 0% 484 22.7% 0 - - - - NULL CRYL1 51084 genome.wustl.edu 37 13 21006307 21006307 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015974.2 -1 reviewed p.E189D 0.994 151 0% 170 15.9% 101 35.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_3HCDH_N,PatternScan_3HCDH CRYL1 51084 genome.wustl.edu 37 13 21013756 21013756 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015974.2 -1 reviewed p.V138 0.557 200 0% 182 17.6% 95 47.3% - - - HMMPfam_3HCDH_N,superfamily_NAD(P)-binding Rossmann-fold domains IFT88 8100 genome.wustl.edu 37 13 21176062 21176062 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175605.3 +1 reviewed p.I353S 1.000 163 0% 121 23.1% 7 71.4% benign(0.018) tolerated(0.51) neutral(0.009) NULL XPO4 64328 genome.wustl.edu 37 13 21374456 21374456 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022459.4 -1 validated p.L662 1.000 291 0% 126 32.5% 3 66.6% - - - superfamily_ARM-type_fold LATS2 26524 genome.wustl.edu 37 13 21549377 21549377 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014572.2 -1 reviewed p.L967M 1.000 301 0% 180 20.6% 14 42.8% possibly_damaging(0.768) deleterious(0) deleterious(0.730) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase SACS 26278 genome.wustl.edu 37 13 23907744 23907744 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.G3424V 1.000 203 0% 116 18.1% 0 - benign(0) tolerated(0.25) neutral(0.037) NULL SACS 26278 genome.wustl.edu 37 13 23909141 23909141 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.K2958 1.000 159 0% 100 17% 0 - - - - NULL SACS 26278 genome.wustl.edu 37 13 23911922 23911922 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.S2031 0.928 110 0% 54 18.5% 0 - - - - NULL SACS 26278 genome.wustl.edu 37 13 23912622 23912622 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.S1798Y 0.882 265 0.4% 171 20.5% 0 - benign(0.013) deleterious(0.03) neutral(0.365) NULL SACS 26278 genome.wustl.edu 37 13 23912892 23912892 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.A1708V 1.000 147 0% 107 22.4% 0 - probably_damaging(0.983) tolerated(0.2) deleterious(0.478) NULL SACS 26278 genome.wustl.edu 37 13 23912936 23912936 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.M1693I 1.000 187 0% 107 16.8% 1 0% benign(0.144) tolerated(0.87) neutral(0.013) NULL SACS 26278 genome.wustl.edu 37 13 23913275 23913275 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.M1580I 1.000 425 0% 193 11.4% 0 - benign(0) tolerated(0.64) neutral(0.003) superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SACS 26278 genome.wustl.edu 37 13 23913700 23913700 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014363.4 -1 reviewed p.L1439I 1.000 536 0% 258 22.1% 0 - probably_damaging(1) tolerated(0.05) deleterious(0.845) NULL TNFRSF19 55504 genome.wustl.edu 37 13 24242971 24242971 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018647.2 +1 reviewed p.P327H 0.095 292 0% 186 22.6% 0 - possibly_damaging(0.692) deleterious(0) deleterious(0.692) NULL MIPEP 4285 genome.wustl.edu 37 13 24438318 24438318 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005932.2 -1 reviewed p.M318I 1.000 172 0% 82 22% 21 14.2% benign(0.003) tolerated(0.19) neutral(0.050) HMMPfam_Peptidase_M3,superfamily_SSF55486 MIPEP 4285 genome.wustl.edu 37 13 24449027 24449027 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005932.2 -1 reviewed p.M187I 1.000 242 0% 144 17.4% 6 33.3% benign(0.008) tolerated(0.12) neutral(0.261) superfamily_SSF55486 C1QTNF9B-AS1 542767 genome.wustl.edu 37 13 24466010 24466010 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135816.1 +1 validated p.L97 0.058 302 0% 334 11.7% 5 20% - - - NULL SPATA13 221178 genome.wustl.edu 37 13 24797832 24797832 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424834 +1 known p.G293* 0.001 85 0% 76 23.7% 2 100% - - - NULL SPATA13 221178 genome.wustl.edu 37 13 24825945 24825945 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424834 +1 known p.H741Y 1.000 89 0% 71 23.9% 3 33.3% - - - PatternScan_PROTAMINE_P1 SPATA13 221178 genome.wustl.edu 37 13 24863184 24863184 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424834 +1 known p.A943T 0.144 90 0% 105 12.4% 6 0% - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) SPATA13 221178 genome.wustl.edu 37 13 24871544 24871544 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424834 +1 known p.W1122* 1.000 145 0% 104 24% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like PARP4 143 genome.wustl.edu 37 13 24995292 24995292 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006437.3 -1 reviewed p.P1714S 0.001 259 0% 144 13.2% 216 39.3% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL ATP12A 479 genome.wustl.edu 37 13 25262661 25262661 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001676.5 +1 reviewed e4+1 1.000 133 0% 132 20.5% 0 - - - - - RNF17 56163 genome.wustl.edu 37 13 25373616 25373616 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031277.2 +1 reviewed p.N495D 0.549 409 0% 132 10.6% 0 - benign(0.4) tolerated(0.06) neutral(0.451) HMMPfam_TUDOR RNF17 56163 genome.wustl.edu 37 13 25376575 25376575 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031277.2 +1 reviewed p.K605N 1.000 337 0% 160 23.1% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL CENPJ 55835 genome.wustl.edu 37 13 25457500 25457500 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018451.3 -1 reviewed p.N1278D 0.997 270 0% 226 27.4% 26 42.3% benign(0.023) tolerated(0.29) neutral(0.030) HMMPfam_Tcp10_C CENPJ 55835 genome.wustl.edu 37 13 25480097 25480097 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018451.3 -1 reviewed p.D693 0.982 320 0% 209 19.1% 3 33.3% - - - NULL FAM123A 219287 genome.wustl.edu 37 13 25744167 25744167 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152704.2 -1 validated p.G531C 0.952 100 0% 125 20.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_WTX MTMR6 9107 genome.wustl.edu 37 13 25831338 25831338 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004685.3 -1 validated p.F364S 1.000 181 0% 92 17.4% 17 11.7% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II NUPL1 9818 genome.wustl.edu 37 13 25889554 25889554 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014089.3 +1 reviewed p.G212C 0.982 660 0% 322 22.4% 4 25% possibly_damaging(0.437) tolerated(0.1) neutral(0.429) NULL ATP8A2 51761 genome.wustl.edu 37 13 26402264 26402264 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016529.4 +1 validated p.F896 1.000 926 0% 400 21.5% 0 - - - - NULL GPR12 2835 genome.wustl.edu 37 13 27333524 27333524 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005288.3 -1 validated p.T147 0.662 83 0% 114 17.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LNX2 222484 genome.wustl.edu 37 13 28136817 28136817 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153371.3 -1 validated p.R319 1.000 317 0% 105 22.9% 3 33.3% - - - NULL LOC100287414 100287414 genome.wustl.edu 37 13 28240009 28240009 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343233.1 -1 model p.R123H 0.000 162 0% 110 22.7% 118 44.9% - - - NULL CDX2 1045 genome.wustl.edu 37 13 28539033 28539033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001265.3 -1 validated p.A221T 0.868 97 0% 143 23.1% 0 - benign(0.025) tolerated(0.09) neutral(0.297) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 CDX2 1045 genome.wustl.edu 37 13 28539053 28539053 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001265.3 -1 validated p.R214Q 1.000 63 0% 118 26.3% 0 - probably_damaging(0.98) deleterious(0.03) deleterious(0.788) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like PAN3 255967 genome.wustl.edu 37 13 28846150 28846150 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175854.7 +1 validated p.V464G 1.000 245 0% 117 26.5% 5 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Kinase_like PAN3 255967 genome.wustl.edu 37 13 28862171 28862171 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175854.7 +1 validated p.K612R 1.000 357 0% 116 24.1% 5 40% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FLT1 2321 genome.wustl.edu 37 13 28877506 28877506 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002019.4 -1 reviewed e30-1 0.995 73 1.4% 28 25% 0 - - - - - FLT1 2321 genome.wustl.edu 37 13 28959043 28959043 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002019.4 -1 reviewed p.H699Y 0.929 444 0% 342 17.3% 4 0% possibly_damaging(0.704) deleterious(0.02) deleterious(0.637) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin FLT1 2321 genome.wustl.edu 37 13 29041666 29041666 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002019.4 -1 reviewed p.L51 0.983 429 0.2% 168 12.5% 5 0% - - - HMMSmart_SM00409,superfamily_Immunoglobulin SLC46A3 283537 genome.wustl.edu 37 13 29286851 29286851 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135919.1 -1 validated p.T342 0.640 165 0% 111 11.7% 6 0% - - - HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter ENSG00000246716 0 genome.wustl.edu 37 13 29298059 29298059 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000500917 +1 known NULL 0.157 51 0% 42 28.6% 0 - - - - - MTUS2 23281 genome.wustl.edu 37 13 29599048 29599048 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033602.2 +1 validated p.R81 0.000 102 0% 73 26% 0 - - - - NULL MTUS2 23281 genome.wustl.edu 37 13 29599334 29599334 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033602.2 +1 validated p.L177I 0.210 133 0.8% 56 30.4% 0 - benign(0.196) deleterious(0.02) neutral(0.402) NULL MTUS2 23281 genome.wustl.edu 37 13 29600693 29600693 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033602.2 +1 validated p.V630I 0.000 64 0% 47 29.8% 0 - benign(0.029) deleterious(0.01) neutral(0.407) NULL MTUS2 23281 genome.wustl.edu 37 13 30077218 30077218 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033602.2 +1 validated p.L1339 1.000 213 0% 225 23.1% 0 - - - - NULL SLC7A1 6541 genome.wustl.edu 37 13 30088671 30088671 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003045.4 -1 validated p.S612 0.951 32 0% 32 40.6% 11 27.2% - - - NULL KATNAL1 84056 genome.wustl.edu 37 13 30805500 30805500 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014380.1 -1 validated p.S279Y 1.000 147 0% 41 17.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases KATNAL1 84056 genome.wustl.edu 37 13 30815149 30815149 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014380.1 -1 validated p.D189 0.424 589 0% 215 15.3% 0 - - - - NULL USPL1 10208 genome.wustl.edu 37 13 31221163 31221163 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005800.4 +1 validated p.K403E 0.999 398 0% 126 16.7% 8 37.5% probably_damaging(0.979) deleterious(0.02) deleterious(0.805) NULL C13orf33 84935 genome.wustl.edu 37 13 31491641 31491641 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032849.3 +1 validated p.T127I 0.000 324 0% 216 20.8% 0 - benign(0.067) tolerated(0.16) neutral(0.064) NULL C13orf33 84935 genome.wustl.edu 37 13 31491642 31491642 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428944 +1 known p.P64H 0.000 323 0.3% 214 19.2% 0 - - - - NULL HSPH1 10808 genome.wustl.edu 37 13 31722581 31722581 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006644.2 -1 validated p.F392V 1.000 161 0% 84 20.2% 24 83.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain HSPH1 10808 genome.wustl.edu 37 13 31725211 31725211 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006644.2 -1 validated p.R261* 0.961 498 0.2% 289 14.9% 21 0% - - - HMMPfam_HSP70,superfamily_Actin-like ATPase domain HSPH1 10808 genome.wustl.edu 37 13 31728826 31728826 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006644.2 -1 validated p.L125 1.000 467 0% 356 18% 22 77.2% - - - HMMPfam_HSP70,superfamily_Actin-like ATPase domain FRY 10129 genome.wustl.edu 37 13 32768297 32768297 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023037.2 +1 validated p.C1203 1.000 375 0% 290 20.7% 0 - - - - NULL FRY 10129 genome.wustl.edu 37 13 32849122 32849122 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023037.2 +1 validated p.A2760 0.006 155 0% 157 17.2% 3 0% - - - NULL ZAR1L 646799 genome.wustl.edu 37 13 32885806 32885806 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136571.1 -1 reviewed p.P86L 1.000 31 0% 43 14% 0 - benign(0) tolerated(0.15) neutral(0.241) NULL BRCA2 675 genome.wustl.edu 37 13 32900706 32900706 + Missense_Mutation SNP G G T rs80358818 byCluster TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000059.3 +1 reviewed p.S196I 1.000 428 0% 253 24.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL BRCA2 675 genome.wustl.edu 37 13 32911095 32911095 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000059.3 +1 reviewed p.T868I 0.000 146 0% 102 14.7% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL BRCA2 675 genome.wustl.edu 37 13 32913807 32913807 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000059.3 +1 reviewed p.I1772S 0.003 161 0% 80 22.5% 1 0% benign(0.146) deleterious(0) neutral(0.457) NULL BRCA2 675 genome.wustl.edu 37 13 32914152 32914152 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000059.3 +1 reviewed p.T1887M 0.001 151 0% 105 24.8% 0 - benign(0.094) tolerated(0.18) neutral(0.063) NULL BRCA2 675 genome.wustl.edu 37 13 32918718 32918718 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000059.3 +1 reviewed p.L2289 0.999 31 0% 71 16.9% 0 - - - - NULL BRCA2 675 genome.wustl.edu 37 13 32972366 32972366 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000059.3 +1 reviewed p.S3239Y 0.050 356 0% 129 44.2% 6 83.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL N4BP2L2 10443 genome.wustl.edu 37 13 33110218 33110218 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014887.2 -1 validated p.G316E 0.005 157 0% 122 20.5% 23 39.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL N4BP2L2 10443 genome.wustl.edu 37 13 33110968 33110968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014887.2 -1 validated p.S66I 0.000 408 0% 300 22.7% 9 44.4% benign(0.009) tolerated(0.83) neutral(0.001) NULL N4BP2L2 10443 genome.wustl.edu 37 13 33111072 33111072 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014887.2 -1 validated p.E31D 0.313 318 0% 278 21.2% 15 46.6% benign(0.008) tolerated(0.61) neutral(0.004) NULL N4BP2L2 10443 genome.wustl.edu 37 13 33111100 33111100 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014887.2 -1 validated p.R22H 0.021 314 0% 306 20.3% 16 18.7% possibly_damaging(0.95) tolerated(0.06) deleterious(0.716) NULL PDS5B 23047 genome.wustl.edu 37 13 33320217 33320217 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015032.3 +1 reviewed p.Q905 1.000 271 0% 123 13% 8 25% - - - superfamily_ARM repeat PDS5B 23047 genome.wustl.edu 37 13 33333804 33333804 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015032.3 +1 reviewed p.M1116I 1.000 264 0.4% 110 15.5% 15 20% benign(0.007) tolerated(0.23) neutral(0.042) NULL PDS5B 23047 genome.wustl.edu 37 13 33344280 33344280 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015032.3 +1 reviewed p.G1216C 1.000 133 0% 47 14.9% 18 16.6% benign(0.237) tolerated(0.05) neutral(0.369) NULL KL 9365 genome.wustl.edu 37 13 33629265 33629265 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004795.3 +1 reviewed p.S471I 1.000 285 0% 151 17.2% 0 - benign(0.208) deleterious(0.01) neutral(0.426) HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases STARD13 90627 genome.wustl.edu 37 13 33680957 33680957 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178006.3 -1 validated p.Y1054 1.000 163 0% 66 18.2% 9 22.2% - - - HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like STARD13 90627 genome.wustl.edu 37 13 33700295 33700295 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178006.3 -1 validated p.V669I 1.000 194 1% 157 22.9% 3 33.3% possibly_damaging(0.932) deleterious(0.03) deleterious(0.743) NULL STARD13 90627 genome.wustl.edu 37 13 33703702 33703702 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178006.3 -1 validated p.A371V 0.998 65 0% 75 18.7% 2 50% benign(0.178) tolerated(0.12) neutral(0.277) NULL RFC3 5983 genome.wustl.edu 37 13 34409299 34409299 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002915.3 +1 reviewed p.R275H 1.000 336 0% 130 20% 34 29.4% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C MAB21L1 4081 genome.wustl.edu 37 13 36049451 36049451 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005584.4 -1 reviewed p.K275 1.000 112 0% 161 23% 0 - - - - HMMPfam_Mab-21 NBEA 26960 genome.wustl.edu 37 13 36167535 36167535 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015678.4 +1 validated p.S2416F 0.403 472 0% 208 13.5% 0 - benign(0.056) deleterious(0) neutral(0.448) HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat SOHLH2 54937 genome.wustl.edu 37 13 36788660 36788660 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017826.2 -1 validated p.A2S 1.000 27 0% 52 23.1% 0 - benign(0.079) deleterious(0) neutral(0.450) NULL SPG20 23111 genome.wustl.edu 37 13 36878616 36878616 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142294.1 -1 reviewed p.Q629H 0.191 871 0% 688 15% 26 26.9% benign(0) deleterious(0.01) neutral(0.406) NULL LOC651868 651868 genome.wustl.edu 37 13 37064275 37064275 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001721200.1 -1 model p.I83S 1.000 58 0% 11 54.5% 0 - - - - HMMSmart_SM00414,superfamily_Histone-fold SMAD9 4093 genome.wustl.edu 37 13 37453431 37453431 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127217.2 -1 reviewed p.R132 1.000 28 0% 17 29.4% 0 - - - - HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain FAM48A 55578 genome.wustl.edu 37 13 37607587 37607587 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014286.2 -1 validated p.R236W 1.000 507 0% 88 10.2% 29 65.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM48A 55578 genome.wustl.edu 37 13 37614812 37614812 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014286.2 -1 validated p.C138 1.000 375 0.3% 149 17.4% 20 60% - - - NULL TRPC4 7223 genome.wustl.edu 37 13 38357204 38357204 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003306.1 -1 validated p.L89 0.699 218 0% 51 21.6% 0 - - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK FREM2 341640 genome.wustl.edu 37 13 39264440 39264440 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207361.4 +1 reviewed p.D987Y 1.000 218 0% 214 23.8% 1 100% possibly_damaging(0.816) tolerated(0.12) deleterious(0.569) NULL FREM2 341640 genome.wustl.edu 37 13 39266063 39266063 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207361.4 +1 reviewed p.D1528N 1.000 185 0% 166 16.9% 0 - probably_damaging(1) tolerated(0.43) deleterious(0.513) NULL FREM2 341640 genome.wustl.edu 37 13 39432093 39432093 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207361.4 +1 reviewed p.L2380M 1.000 491 0% 131 10.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FREM2 341640 genome.wustl.edu 37 13 39438677 39438677 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207361.4 +1 reviewed p.F2639 1.000 227 0% 59 30.5% 0 - - - - NULL FOXO1 2308 genome.wustl.edu 37 13 41134954 41134954 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002015.3 -1 reviewed p.R225H 1.000 146 0% 91 12.1% 8 12.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785 MRPS31 10240 genome.wustl.edu 37 13 41331012 41331012 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005830.3 -1 reviewed p.K246I 0.029 349 0% 298 24.8% 34 52.9% benign(0.132) tolerated(0.08) neutral(0.311) NULL SLC25A15 10166 genome.wustl.edu 37 13 41381542 41381542 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014252.3 +1 reviewed p.G189S 0.989 544 0% 413 19.4% 9 11.1% probably_damaging(0.963) deleterious(0) deleterious(0.850) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr SLC25A15 10166 genome.wustl.edu 37 13 41382582 41382582 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014252.3 +1 reviewed p.P211S 1.000 677 0% 408 16.4% 16 31.2% benign(0.196) tolerated(0.34) neutral(0.041) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr KBTBD6 89890 genome.wustl.edu 37 13 41705285 41705285 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152903.4 -1 validated p.E455K 1.000 157 0% 114 21.9% 3 66.6% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central MTRF1 9617 genome.wustl.edu 37 13 41808104 41808104 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004294.2 -1 reviewed p.T304A 1.000 355 0% 115 27% 14 78.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_RF-1,superfamily_SSF75620 MTRF1 9617 genome.wustl.edu 37 13 41834650 41834650 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004294.2 -1 reviewed p.E132* 1.000 602 0% 307 24.4% 4 50% - - - superfamily_SSF75620 NAA16 79612 genome.wustl.edu 37 13 41932462 41932462 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024561.4 +1 validated p.P370 0.997 216 0% 229 29.7% 3 0% - - - superfamily_TPR-like NAA16 79612 genome.wustl.edu 37 13 41946362 41946362 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024561.4 +1 validated p.A657 0.822 254 0% 100 21% 4 50% - - - superfamily_TPR-like RGCC 28984 genome.wustl.edu 37 13 42040958 42040958 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014059.2 +1 reviewed e3-1 1.000 270 0% 238 10.9% 1 0% - - - - KIAA0564 23078 genome.wustl.edu 37 13 42264319 42264319 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015058.1 -1 validated p.G1320E 1.000 261 0% 105 21.9% 5 40% benign(0.042) tolerated(0.19) neutral(0.052) NULL KIAA0564 23078 genome.wustl.edu 37 13 42303759 42303759 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015058.1 -1 validated p.P853T 1.000 420 0% 109 13.8% 16 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases DGKH 160851 genome.wustl.edu 37 13 42729884 42729884 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178009.2 +1 reviewed p.V191M 1.000 184 0% 155 20.6% 2 50% possibly_damaging(0.816) deleterious(0.04) deleterious(0.657) HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain AKAP11 11215 genome.wustl.edu 37 13 42877106 42877106 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016248.2 +1 reviewed p.E1408D 0.119 123 0% 43 23.3% 1 0% benign(0.108) tolerated(0.07) neutral(0.328) NULL AKAP11 11215 genome.wustl.edu 37 13 42877649 42877649 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016248.2 +1 reviewed p.Y1589 0.011 237 0% 52 23.1% 6 0% - - - NULL TNFSF11 8600 genome.wustl.edu 37 13 43180746 43180746 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003701.3 +1 reviewed p.L216 1.000 365 0% 107 14% 0 - - - - HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like FAM216B 144809 genome.wustl.edu 37 13 43358195 43358195 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182508.2 +1 validated e1-1 0.004 382 0% 171 17% 0 - - - - - LACC1 144811 genome.wustl.edu 37 13 44455220 44455220 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128303.1 +1 validated p.Y33 0.024 324 0% 432 25.7% 3 33.3% - - - NULL TSC22D1 8848 genome.wustl.edu 37 13 45149039 45149039 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183422.2 -1 validated p.G391E 0.982 316 0% 281 22.1% 13 46.1% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL NUFIP1 26747 genome.wustl.edu 37 13 45563190 45563190 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012345.2 -1 validated p.P128T 0.000 87 0% 95 20% 3 66.6% benign(0.06) tolerated(0.62) neutral(0.008) NULL KCTD4 386618 genome.wustl.edu 37 13 45768683 45768683 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198404.2 -1 validated p.R7I 1.000 604 0% 271 25.1% 0 - unknown(0) deleterious(0) - NULL TPT1 7178 genome.wustl.edu 37 13 45913655 45913655 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003295.2 -1 provisional p.L126F 1.000 422 0% 620 21.5% 5857 31.6% benign(0.045) tolerated(0.06) neutral(0.325) HMMPfam_TCTP,superfamily_Mss4-like SLC25A30 253512 genome.wustl.edu 37 13 45975289 45975289 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010875.2 -1 validated p.P181 0.019 166 0% 159 22.6% 5 20% - - - superfamily_Mitoch_carrier,HMMPfam_Mito_carr SLC25A30 253512 genome.wustl.edu 37 13 45985539 45985539 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010875.2 -1 validated p.P8S 1.000 219 0% 215 23.7% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) superfamily_Mitoch_carrier,HMMPfam_Mito_carr ZC3H13 23091 genome.wustl.edu 37 13 46541722 46541722 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015070.3 -1 validated p.D1413A 1.000 343 0% 124 17.7% 16 43.7% probably_damaging(0.99) tolerated(0.06) deleterious(0.764) NULL ZC3H13 23091 genome.wustl.edu 37 13 46543970 46543970 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015070.3 -1 validated p.R903 0.997 804 0.1% 251 10.8% 13 23% - - - NULL ZC3H13 23091 genome.wustl.edu 37 13 46616331 46616331 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015070.3 -1 validated p.R103* 1.000 543 0% 446 20.9% 6 16.6% - - - NULL LRCH1 23143 genome.wustl.edu 37 13 47269154 47269154 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015116.2 +1 reviewed e9+2 0.994 384 0% 107 23.4% 0 - - - - - ESD 2098 genome.wustl.edu 37 13 47345584 47345584 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001984.1 -1 reviewed p.H272 1.000 547 0% 134 18.7% 124 42.7% - - - HMMPfam_Esterase,superfamily_SSF53474 HTR2A 3356 genome.wustl.edu 37 13 47409002 47409002 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000621.3 -1 reviewed p.D462 0.000 254 0% 112 27.7% 0 - - - - NULL HTR2A 3356 genome.wustl.edu 37 13 47469874 47469874 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000621.3 -1 reviewed p.S56 1.000 315 0% 388 21.4% 0 - - - - superfamily_Family A G protein-coupled receptor-like SUCLA2 8803 genome.wustl.edu 37 13 48523092 48523092 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003850.2 -1 reviewed p.D434Y 1.000 535 0% 151 19.2% 127 45.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ligase_CoA,superfamily_Succinyl-CoA synthetase domains CYSLTR2 57105 genome.wustl.edu 37 13 49281617 49281617 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020377.2 +1 reviewed p.L222M 0.857 255 0% 70 22.9% 0 - benign(0.005) tolerated(0.24) neutral(0.037) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CYSLTR2 57105 genome.wustl.edu 37 13 49281757 49281757 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020377.2 +1 reviewed p.T268 0.002 356 0% 119 25.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CDADC1 81602 genome.wustl.edu 37 13 49865876 49865876 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030911.2 +1 validated p.R510C 0.968 183 0% 99 19.2% 4 25% benign(0) tolerated(0.27) neutral(0.034) NULL KPNA3 3839 genome.wustl.edu 37 13 50299559 50299559 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002267.3 -1 reviewed p.V154 0.998 262 0% 210 13.8% 9 22.2% - - - HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat RNASEH2B 79621 genome.wustl.edu 37 13 51509073 51509073 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024570.2 +1 reviewed p.C125Y 0.787 417 0% 144 16.7% 75 37.3% probably_damaging(0.969) deleterious(0) deleterious(0.856) HMMPfam_RNase_H2-Ydr279 GUCY1B2 2974 genome.wustl.edu 37 13 51594597 51594597 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389600 -1 known p.L262F 1.000 353 0% 127 16.5% 1 0% - - - HMMSmart_CYCc,HMMPfam_HNOBA INTS6 26512 genome.wustl.edu 37 13 51943258 51943258 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012141.2 -1 reviewed p.L765I 1.000 360 0% 199 24.1% 18 22.2% probably_damaging(0.971) tolerated(0.48) neutral(0.423) NULL INTS6 26512 genome.wustl.edu 37 13 51969571 51969571 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012141.2 -1 reviewed p.E160K 1.000 200 0% 66 21.2% 9 44.4% benign(0.261) deleterious(0.04) neutral(0.376) NULL DHRS12 79758 genome.wustl.edu 37 13 52346011 52346011 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031719.1 -1 provisional p.G169W 0.000 69 0% 71 11.3% 12 16.6% benign(0.008) deleterious(0.02) neutral(0.383) superfamily_NAD(P)-bd ATP7B 540 genome.wustl.edu 37 13 52520432 52520432 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000053.2 -1 reviewed p.E1016D 0.999 54 0% 55 23.6% 6 66.6% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M ATP7B 540 genome.wustl.edu 37 13 52523858 52523858 + Silent SNP C C T rs141872590 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000053.2 -1 reviewed p.T935 0.983 276 0% 240 22.9% 0 - - - - HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M ATP7B 540 genome.wustl.edu 37 13 52534422 52534422 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000053.2 -1 reviewed p.G661 0.994 220 0% 102 21.6% 2 100% - - - NULL ATP7B 540 genome.wustl.edu 37 13 52548188 52548188 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000053.2 -1 reviewed p.I390L 0.000 268 0% 86 17.4% 3 66.6% possibly_damaging(0.559) tolerated(0.16) neutral(0.250) HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1 ATP7B 540 genome.wustl.edu 37 13 52548410 52548410 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000053.2 -1 reviewed p.E316K 1.000 118 0% 53 26.4% 1 100% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_HMA,superfamily_HMA heavy metal-associated domain NEK5 341676 genome.wustl.edu 37 13 52650203 52650203 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199289.1 -1 provisional p.A575D 0.198 601 0% 778 18.3% 0 - probably_damaging(0.981) deleterious(0.01) deleterious(0.831) NULL NEK5 341676 genome.wustl.edu 37 13 52682523 52682523 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199289.1 -1 provisional p.R162Q 0.215 438 0% 237 26.6% 2 0% benign(0.076) tolerated(0.29) neutral(0.035) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase NEK3 4752 genome.wustl.edu 37 13 52707825 52707825 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000258597 -1 known p.T480M 1.000 154 0% 197 25.4% 16 56.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NEK3 4752 genome.wustl.edu 37 13 52707897 52707897 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000258597 -1 known p.S456N 0.000 200 0% 213 29.1% 13 53.8% benign(0) tolerated(0.14) neutral(0.249) NULL NEK3 4752 genome.wustl.edu 37 13 52725352 52725352 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000258597 -1 known p.A159 1.000 437 0% 409 20% 4 50% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase THSD1 55901 genome.wustl.edu 37 13 52951591 52951591 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018676.3 -1 reviewed p.E838D 0.999 276 0% 205 9.8% 10 10% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL THSD1 55901 genome.wustl.edu 37 13 52952399 52952399 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018676.3 -1 reviewed p.S569I 0.001 66 0% 44 29.5% 4 0% benign(0.036) tolerated(0.15) neutral(0.243) NULL THSD1 55901 genome.wustl.edu 37 13 52952842 52952842 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018676.3 -1 reviewed p.S421 0.987 188 0% 122 15.6% 1 0% - - - NULL VPS36 51028 genome.wustl.edu 37 13 52990015 52990015 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016075.2 -1 validated p.S371T 1.000 252 0% 289 21.5% 19 63.1% benign(0.203) tolerated(0.14) neutral(0.269) NULL CKAP2 26586 genome.wustl.edu 37 13 53036503 53036503 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098525.1 +1 validated p.R370H 0.995 256 0% 292 20.9% 16 25% possibly_damaging(0.896) tolerated(0.06) deleterious(0.676) NULL SUGT1 10910 genome.wustl.edu 37 13 53233356 53233356 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130912.1 +1 reviewed p.E100D 0.935 63 0% 141 16.3% 55 49% benign(0.128) tolerated(0.13) neutral(0.263) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like SUGT1 10910 genome.wustl.edu 37 13 53239821 53239821 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130912.1 +1 reviewed p.K190E 1.000 333 0% 251 23.5% 80 40% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_HSP20-like chaperones,HMMPfam_CS LECT1 11061 genome.wustl.edu 37 13 53313764 53313764 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007015.2 -1 reviewed e1+1 1.000 189 0% 276 23.2% 0 - - - - - MIR759 100313778 genome.wustl.edu 37 13 53384198 53384198 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390224 +1 known NULL 1.000 42 0% 52 19.2% 0 - - - - - PCDH8 5100 genome.wustl.edu 37 13 53419564 53419564 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002590.2 -1 reviewed p.Q945H 1.000 176 0% 245 17.6% 0 - possibly_damaging(0.928) tolerated(0.57) neutral(0.382) NULL OLFM4 10562 genome.wustl.edu 37 13 53624216 53624216 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006418.3 +1 reviewed p.Q281H 0.000 286 0% 82 13.4% 2 0% possibly_damaging(0.836) tolerated(0.16) neutral(0.379) HMMPfam_OLF,HMMSmart_OLF OLFM4 10562 genome.wustl.edu 37 13 53624729 53624729 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006418.3 +1 reviewed p.E452D 0.999 454 0% 94 18.1% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_OLF,HMMSmart_OLF PCDH17 27253 genome.wustl.edu 37 13 58206923 58206923 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.S81 0.998 23 0% 29 27.6% 0 - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDH17 27253 genome.wustl.edu 37 13 58207008 58207008 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.A110T 1.000 57 0% 90 23.3% 3 0% possibly_damaging(0.907) tolerated(0.16) neutral(0.420) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDH17 27253 genome.wustl.edu 37 13 58208417 58208417 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.N579 1.000 27 0% 16 37.5% 2 0% - - - HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like PCDH17 27253 genome.wustl.edu 37 13 58208595 58208595 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.D639N 0.997 14 0% 21 33.3% 0 - probably_damaging(1) tolerated(0.29) deleterious(0.529) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH17 27253 genome.wustl.edu 37 13 58208996 58208996 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.S772 1.000 162 0% 140 21.4% 1 0% - - - NULL PCDH17 27253 genome.wustl.edu 37 13 58298880 58298880 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.V978I 1.000 191 0% 81 17.3% 3 0% benign(0.008) tolerated(1) - NULL PCDH17 27253 genome.wustl.edu 37 13 58299381 58299381 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040429.2 +1 reviewed p.L1145I 1.000 201 0% 61 16.4% 2 50% probably_damaging(0.991) tolerated(0.3) deleterious(0.473) NULL LOC341689 341689 genome.wustl.edu 37 13 59104758 59104758 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_017487.3 +1 model NULL 0.372 187 0% 166 22.3% 0 - - - - - DIAPH3 81624 genome.wustl.edu 37 13 60240791 60240791 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042517.1 -1 validated p.L1170R 0.996 290 0% 211 22.7% 21 33.3% benign(0.012) deleterious(0) neutral(0.445) NULL DIAPH3 81624 genome.wustl.edu 37 13 60348917 60348917 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042517.1 -1 validated p.A1068 1.000 219 0% 62 25.8% 20 55% - - - HMMSmart_SM00498,HMMPfam_Drf_DAD TDRD3 81550 genome.wustl.edu 37 13 61068636 61068636 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030794.2 +1 validated p.R169Q 1.000 611 0.3% 243 22.6% 21 38% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL PCDH20 64881 genome.wustl.edu 37 13 61986583 61986583 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022843.3 -1 validated p.P550L 1.000 238 0% 247 22.7% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_Cadherin,superfamily_Cadherin LOC647262 647262 genome.wustl.edu 37 13 64321019 64321019 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_934622.3 +1 model p.G29V 0.040 138 0% 152 22.4% 0 - unknown(0) deleterious(0) - NULL PCDH9 5101 genome.wustl.edu 37 13 66878991 66878991 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203487.2 -1 reviewed p.K1170 1.000 418 0% 84 19% 1 0% - - - NULL PCDH9 5101 genome.wustl.edu 37 13 67799770 67799770 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203487.2 -1 reviewed p.L935M 1.000 260 0% 236 19.1% 4 75% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Protocadherin PCDH9 5101 genome.wustl.edu 37 13 67800247 67800247 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203487.2 -1 reviewed p.D776N 1.000 262 0% 235 25.1% 0 - benign(0.334) deleterious(0) deleterious(0.549) HMMSmart_SM00112,superfamily_Cadherin-like KLHL1 57626 genome.wustl.edu 37 13 70371043 70371043 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020866.2 -1 validated p.A489V 1.000 441 0% 256 22.3% 0 - benign(0) tolerated(1) - HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain KLHL1 57626 genome.wustl.edu 37 13 70514219 70514219 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020866.2 -1 validated p.A323T 1.000 194 0% 68 20.6% 0 - benign(0.008) tolerated(1) - HMMPfam_BACK DACH1 1602 genome.wustl.edu 37 13 72147001 72147001 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080759.4 -1 reviewed p.P424T 1.000 298 0% 110 20% 1 0% probably_damaging(0.983) tolerated(0.49) neutral(0.440) NULL TBC1D4 9882 genome.wustl.edu 37 13 75900509 75900509 + Silent SNP C C T rs143268388 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014832.2 -1 validated p.P619 0.995 230 0% 109 17.4% 3 0% - - - NULL LMO7 4008 genome.wustl.edu 37 13 76395705 76395705 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015842.2 +1 reviewed p.S634Y 0.988 147 0% 45 13.3% 15 40% benign(0.159) deleterious(0.01) neutral(0.420) NULL CLN5 1203 genome.wustl.edu 37 13 77569199 77569199 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006493.2 +1 reviewed p.R108C 1.000 248 0% 342 19.6% 10 30% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MYCBP2 23077 genome.wustl.edu 37 13 77720322 77720322 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015057.4 -1 validated p.R2350C 1.000 266 0% 145 20% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_E set domains MYCBP2 23077 genome.wustl.edu 37 13 77724943 77724943 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015057.4 -1 validated p.S2315P 0.985 534 0% 295 18% 0 - benign(0.039) tolerated(0.87) neutral(0.003) superfamily_E set domains MYCBP2 23077 genome.wustl.edu 37 13 77751986 77751986 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015057.4 -1 validated p.A1708V 1.000 291 0% 210 22.4% 2 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_PHR MYCBP2 23077 genome.wustl.edu 37 13 77836212 77836212 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015057.4 -1 validated p.A503 1.000 399 0% 166 16.9% 1 100% - - - superfamily_RCC1/BLIP-II SCEL 8796 genome.wustl.edu 37 13 78141835 78141835 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144777.2 +1 validated p.A104V 0.927 237 0% 141 12.1% 2 0% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL SCEL 8796 genome.wustl.edu 37 13 78177210 78177210 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144777.2 +1 validated e17-1 0.015 115 0% 48 22.9% 0 - - - - - SLAIN1 122060 genome.wustl.edu 37 13 78318542 78318542 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040153.2 +1 validated p.Q56 1.000 149 0% 24 29.2% 14 64.2% - - - NULL RNF219 79596 genome.wustl.edu 37 13 79190595 79190595 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024546.3 -1 validated p.S434Y 0.994 135 0% 106 23.6% 2 0% possibly_damaging(0.519) deleterious(0.01) deleterious(0.580) NULL SPRY2 10253 genome.wustl.edu 37 13 80911238 80911238 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005842.2 -1 reviewed p.C201 1.000 217 0% 195 25.1% 224 43.3% - - - HMMPfam_Sprouty SLITRK1 114798 genome.wustl.edu 37 13 84453856 84453856 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052910.1 -1 reviewed p.S596I 1.000 254 0% 182 24.2% 0 - possibly_damaging(0.598) tolerated(0.27) neutral(0.240) NULL SLITRK1 114798 genome.wustl.edu 37 13 84453964 84453964 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052910.1 -1 reviewed p.T560M 1.000 148 0% 112 18.8% 0 - benign(0.427) deleterious(0) deleterious(0.584) HMMSmart_LRRCT,superfamily_SSF52058 SLITRK1 114798 genome.wustl.edu 37 13 84454795 84454795 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052910.1 -1 reviewed p.P283H 1.000 321 0% 350 12% 0 - probably_damaging(0.99) tolerated(0.32) neutral(0.466) NULL SLITRK1 114798 genome.wustl.edu 37 13 84455212 84455212 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052910.1 -1 reviewed p.D144G 1.000 60 0% 93 19.4% 0 - benign(0.384) tolerated(0.34) neutral(0.145) superfamily_SSF52058 SLITRK6 84189 genome.wustl.edu 37 13 86368839 86368839 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032229.2 -1 validated p.T602M 0.997 281 0% 81 14.8% 0 - possibly_damaging(0.504) tolerated(0.1) neutral(0.455) NULL SLITRK5 26050 genome.wustl.edu 37 13 88327819 88327819 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015567.1 +1 validated p.G59D 1.000 256 0% 337 24% 0 - probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_L domain-like SLITRK5 26050 genome.wustl.edu 37 13 88328829 88328829 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015567.1 +1 validated p.R396* 1.000 104 0% 141 22.7% 0 - - - - HMMPfam_LRRNT,superfamily_L domain-like SLITRK5 26050 genome.wustl.edu 37 13 88329151 88329151 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015567.1 +1 validated p.P503L 0.018 75 0% 158 20.3% 0 - benign(0) tolerated(0.48) neutral(0.011) HMMSmart_SM00369,superfamily_L domain-like SLITRK5 26050 genome.wustl.edu 37 13 88329334 88329334 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015567.1 +1 validated p.P564H 1.000 96 0% 100 26% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00082,superfamily_L domain-like GPC5 2262 genome.wustl.edu 37 13 92101063 92101063 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004466.4 +1 reviewed p.R71K 1.000 303 0% 104 18.3% 0 - benign(0.004) tolerated(0.19) neutral(0.050) HMMPfam_Glypican GPC6 10082 genome.wustl.edu 37 13 94680110 94680110 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005708.3 +1 reviewed p.N280S 1.000 156 0% 152 14.5% 0 - benign(0.149) tolerated(0.08) neutral(0.313) HMMPfam_Glypican DCT 1638 genome.wustl.edu 37 13 95092216 95092216 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129889.1 -1 validated p.R532Q 0.305 300 0.3% 53 28.3% 0 - benign(0.222) tolerated(0.2) neutral(0.071) NULL ABCC4 10257 genome.wustl.edu 37 13 95686994 95686994 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005845.3 -1 reviewed e30-1 1.000 309 0% 177 26% 0 - - - - - DZIP1 22873 genome.wustl.edu 37 13 96242533 96242533 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198968.2 -1 validated p.D615Y 0.079 394 0% 185 21.6% 4 25% probably_damaging(0.964) deleterious(0.03) deleterious(0.771) NULL UGGT2 55757 genome.wustl.edu 37 13 96665578 96665578 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020121.3 -1 validated p.L215I 1.000 247 0% 171 18.7% 12 41.6% probably_damaging(0.978) tolerated(0.1) deleterious(0.707) NULL OXGR1 27199 genome.wustl.edu 37 13 97639594 97639594 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080818.3 -1 reviewed p.S140 0.904 185 0% 130 19.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MBNL2 10150 genome.wustl.edu 37 13 97999118 97999118 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144778.2 +1 reviewed p.H201Y 1.000 120 0% 111 24.3% 11 54.5% benign(0.333) deleterious(0) deleterious(0.549) HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1 MBNL2 10150 genome.wustl.edu 37 13 98009738 98009738 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144778.2 +1 reviewed p.A269 1.000 224 0% 157 12.1% 7 42.8% - - - NULL IPO5 3843 genome.wustl.edu 37 13 98658451 98658451 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002271.4 +1 reviewed p.T540N 1.000 316 0% 166 16.9% 48 54.1% probably_damaging(0.971) deleterious(0.02) deleterious(0.796) superfamily_ARM-type_fold IPO5 3843 genome.wustl.edu 37 13 98670804 98670804 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002271.4 +1 reviewed p.H912Q 1.000 254 0% 98 20.4% 139 7.9% possibly_damaging(0.901) tolerated(0.43) neutral(0.370) superfamily_ARM-type_fold SLC15A1 6564 genome.wustl.edu 37 13 99339866 99339866 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005073.3 -1 reviewed p.S599Y 1.000 256 0% 115 11.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PTR2,superfamily_MFS general substrate transporter DOCK9 23348 genome.wustl.edu 37 13 99508280 99508280 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000357329 -1 known p.P1236S 1.000 467 0% 253 23.3% 5 20% possibly_damaging(0.906) tolerated(0.09) deleterious(0.656) NULL DOCK9 23348 genome.wustl.edu 37 13 99520541 99520541 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130049.1 -1 validated p.R1013* 1.000 292 0% 121 19% 4 0% - - - NULL UBAC2 337867 genome.wustl.edu 37 13 100037562 100037562 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144072.1 +1 validated p.V336 0.842 92 0% 90 16.7% 109 16.5% - - - HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165 TM9SF2 9375 genome.wustl.edu 37 13 100169902 100169902 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004800.1 +1 provisional p.S69L 1.000 447 0% 199 16.1% 27 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TM9SF2 9375 genome.wustl.edu 37 13 100172344 100172344 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004800.1 +1 provisional p.Q98H 0.977 294 0% 199 23.6% 49 34.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_EMP70 NALCN 259232 genome.wustl.edu 37 13 101710387 101710387 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052867.2 -1 validated p.L1643M 0.997 84 0% 48 12.5% 1 0% possibly_damaging(0.855) deleterious(0.03) deleterious(0.695) NULL NALCN 259232 genome.wustl.edu 37 13 101712175 101712175 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052867.2 -1 validated p.P1634T 1.000 153 0% 76 26.3% 1 100% benign(0) tolerated(0.25) neutral(0.037) NULL NALCN 259232 genome.wustl.edu 37 13 101742110 101742110 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052867.2 -1 validated p.I1131 1.000 323 0% 66 30.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels FGF14 2259 genome.wustl.edu 37 13 102378989 102378989 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175929.2 -1 reviewed p.A199T 1.000 385 0% 170 30% 0 - possibly_damaging(0.504) tolerated(0.6) neutral(0.173) HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like LOC643677 643677 genome.wustl.edu 37 13 103385420 103385420 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.A5724V 0.000 725 0% 186 17.7% 0 - unknown(0) - - NULL LOC643677 643677 genome.wustl.edu 37 13 103385455 103385455 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.T5712 0.000 707 0% 163 16.6% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103388430 103388430 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.A4721T 0.000 561 0% 149 22.8% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL LOC643677 643677 genome.wustl.edu 37 13 103394448 103394448 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.E2796* 0.000 351 0.3% 92 20.7% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103397639 103397639 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.R1732H 0.006 197 0% 62 22.6% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103399407 103399407 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.L1143M 0.000 370 0% 109 28.4% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103402135 103402135 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344085.1 -1 model p.A233 0.014 192 0% 41 14.6% 0 - - - - NULL TEX30 93081 genome.wustl.edu 37 13 103421845 103421845 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138779.3 -1 validated p.C21Y 1.000 213 0% 287 20.6% 20 35% benign(0.032) tolerated(0.23) neutral(0.043) superfamily_SSF53474 ERCC5 2073 genome.wustl.edu 37 13 103515434 103515434 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000123.2 +1 reviewed p.S645 0.840 175 0% 81 21% 31 41.9% - - - superfamily_PIN domain-like ERCC5 2073 genome.wustl.edu 37 13 103527876 103527876 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000123.2 +1 reviewed p.N1062D 0.000 237 0% 144 24.3% 58 39.6% benign(0.028) tolerated(0.63) neutral(0.005) NULL EFNB2 1948 genome.wustl.edu 37 13 107145555 107145555 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004093.2 -1 reviewed p.G279S 1.000 190 0% 130 26.2% 4 25% benign(0.056) tolerated(0.46) neutral(0.015) NULL LIG4 3981 genome.wustl.edu 37 13 108862201 108862201 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098268.1 -1 reviewed p.G472 0.009 352 0% 402 25.4% 3 66.6% - - - NULL ABHD13 84945 genome.wustl.edu 37 13 108882048 108882048 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032859.2 +1 validated p.S161N 1.000 299 0% 184 22.3% 16 31.2% possibly_damaging(0.916) deleterious(0.04) deleterious(0.716) HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases MYO16 23026 genome.wustl.edu 37 13 109661346 109661346 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015011.1 +1 validated p.E826 1.000 243 0% 169 12.4% 0 - - - - HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO16 23026 genome.wustl.edu 37 13 109831938 109831938 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015011.1 +1 validated p.G1769V 0.000 389 0% 203 19.7% 0 - benign(0.339) deleterious(0.01) deleterious(0.513) NULL COL4A1 1282 genome.wustl.edu 37 13 110833653 110833653 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001845.4 -1 reviewed p.V727M 0.000 109 0% 90 22.2% 40 27.5% possibly_damaging(0.928) tolerated(0.23) neutral(0.417) HMMPfam_Collagen COL4A1 1282 genome.wustl.edu 37 13 110838761 110838761 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001845.4 -1 reviewed p.P623H 0.989 23 0% 17 23.5% 63 20.6% unknown(0) tolerated(0.12) - HMMPfam_Collagen RAB20 55647 genome.wustl.edu 37 13 111176269 111176269 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017817.1 -1 provisional p.Q150* 0.000 104 0% 70 25.7% 53 32% - - - HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases RAB20 55647 genome.wustl.edu 37 13 111213850 111213850 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017817.1 -1 provisional p.S6N 0.994 22 0% 23 21.7% 13 46.1% benign(0.03) tolerated(0.09) neutral(0.298) HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases ING1 3621 genome.wustl.edu 37 13 111371784 111371784 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005537.3 +1 reviewed p.A258 0.003 31 0% 24 33.3% 26 61.5% - - - NULL ING1 3621 genome.wustl.edu 37 13 111372144 111372144 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005537.3 +1 reviewed p.W378* 1.000 84 0% 104 24% 44 45.4% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD ARHGEF7 8874 genome.wustl.edu 37 13 111932971 111932971 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113511.1 +1 reviewed p.V579I 1.000 182 0% 132 19.7% 12 50% benign(0.004) tolerated(0.49) neutral(0.011) HMMSmart_SM00233 ARHGEF7 8874 genome.wustl.edu 37 13 111955337 111955337 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113513.1 +1 reviewed e17-1 1.000 224 0% 161 23% 0 - - - - - C13orf35 400165 genome.wustl.edu 37 13 113337690 113337690 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207440.1 +1 provisional p.R121Q 0.010 416 0.2% 464 14.7% 0 - unknown(0) - - NULL ATP11A 23250 genome.wustl.edu 37 13 113488933 113488933 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000418678 +1 known p.T505I 1.000 270 0% 215 19.5% 5 80% - - - superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N MCF2L 23263 genome.wustl.edu 37 13 113714950 113714950 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112732.1 +1 validated p.P195L 1.000 120 0% 137 25.5% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00516 MCF2L 23263 genome.wustl.edu 37 13 113729374 113729374 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112732.1 +1 validated p.H450Q 1.000 42 0% 69 14.5% 5 20% probably_damaging(0.99) deleterious(0.04) deleterious(0.790) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat MCF2L 23263 genome.wustl.edu 37 13 113730316 113730316 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112732.1 +1 validated p.A506S 1.000 129 0% 114 34.2% 5 60% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Spectrin repeat MCF2L 23263 genome.wustl.edu 37 13 113742891 113742891 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112732.1 +1 validated p.R985Q 0.218 40 0% 35 20% 10 30% possibly_damaging(0.753) tolerated(0.35) neutral(0.297) superfamily_PH domain-like MCF2L 23263 genome.wustl.edu 37 13 113748871 113748871 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000397017 +1 known p.R685W 0.315 106 0.9% 186 28.5% 12 41.6% - - - NULL F10 2159 genome.wustl.edu 37 13 113795349 113795349 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000504.3 +1 reviewed p.A163T 0.957 45 0% 43 32.6% 1 0% benign(0.066) tolerated(0.11) neutral(0.276) HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin PCID2 55795 genome.wustl.edu 37 13 113838700 113838700 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127202.1 -1 validated p.Y215 0.764 585 0% 547 17.4% 34 38.2% - - - HMMSmart_SM00753 LAMP1 3916 genome.wustl.edu 37 13 113973965 113973965 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005561.3 +1 reviewed p.D248 0.105 53 0% 41 29.3% 280 34.6% - - - HMMPfam_Lamp TMCO3 55002 genome.wustl.edu 37 13 114149957 114149957 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017905.4 +1 validated p.Q21* 0.000 96 0% 135 20% 9 22.2% - - - NULL GRK1 6011 genome.wustl.edu 37 13 114322111 114322111 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000335678 +1 known p.G137E 0.032 109 0% 145 21.4% 0 - benign(0.255) tolerated(0.26) neutral(0.060) HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam GRK1 6011 genome.wustl.edu 37 13 114322340 114322340 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000335678 +1 known p.G213 1.000 52 0% 84 25% 0 - - - - HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase GRK1 6011 genome.wustl.edu 37 13 114436018 114436018 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000335678 +1 known p.H452 0.002 67 0% 95 18.9% 0 - - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase GAS6 2621 genome.wustl.edu 37 13 114541145 114541145 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000820.2 -1 reviewed p.Q162H 0.000 88 0% 96 20.8% 18 0% benign(0) tolerated(0.14) neutral(0.249) HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196 GAS6 2621 genome.wustl.edu 37 13 114566591 114566591 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000820.2 -1 reviewed p.S71I 0.975 17 0% 17 23.5% 6 0% possibly_damaging(0.49) deleterious(0) deleterious(0.608) HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA CDC16 8881 genome.wustl.edu 37 13 115030701 115030701 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001078645.1 +1 reviewed p.S530F 1.000 794 0% 414 22.2% 100 27% benign(0.3) deleterious(0) deleterious(0.537) NULL UPF3A 65110 genome.wustl.edu 37 13 115067459 115067459 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023011.2 +1 reviewed p.D421N 0.967 104 0% 71 14.1% 11 18.1% possibly_damaging(0.512) deleterious(0.02) deleterious(0.555) NULL CHAMP1 283489 genome.wustl.edu 37 13 115091732 115091732 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032436.2 +1 validated p.P805 0.001 118 0% 65 18.5% 18 61.1% - - - NULL OR11H12 440153 genome.wustl.edu 37 14 19377747 19377747 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013354.1 +1 provisional p.L52M 0.016 678 0% 274 14.2% 0 - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) superfamily_SSF81321 OR11H12 440153 genome.wustl.edu 37 14 19378198 19378198 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013354.1 +1 provisional p.L202S 0.019 1099 0.1% 312 16% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OR11H12 440153 genome.wustl.edu 37 14 19378255 19378255 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013354.1 +1 provisional p.V221A 0.004 946 0% 252 13.5% 0 - benign(0.053) deleterious(0.01) neutral(0.409) HMMPfam_7tm_1,superfamily_SSF81321 ENSG00000226518 0 genome.wustl.edu 37 14 20085483 20085483 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422907 +1 known p.V29I 1.000 120 0% 73 15.1% 0 - - - - NULL OR4Q3 441669 genome.wustl.edu 37 14 20215762 20215762 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172194.1 +1 provisional p.P59H 1.000 382 0% 122 19.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OR4K5 79317 genome.wustl.edu 37 14 20389592 20389592 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005483.1 +1 provisional p.T276N 0.016 505 0% 142 28.2% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_7tm_1,superfamily_SSF81321 OR4K1 79544 genome.wustl.edu 37 14 20404190 20404190 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004063.2 +1 validated p.R122I 1.000 347 0.3% 178 9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 OR4L1 122742 genome.wustl.edu 37 14 20528637 20528637 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004717.1 +1 provisional p.A145V 0.027 240 0% 80 13.8% 0 - benign(0) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 OR11H4 390442 genome.wustl.edu 37 14 20711264 20711264 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004479.1 +1 provisional p.S105Y 0.005 247 0% 171 28.7% 0 - benign(0.005) deleterious(0.04) neutral(0.349) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CCNB1IP1 57820 genome.wustl.edu 37 14 20781832 20781832 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021178.3 -1 validated p.E142D 1.000 333 0% 420 12.6% 67 38.8% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) NULL PARP2 10038 genome.wustl.edu 37 14 20825639 20825639 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005484.3 +1 reviewed p.L518M 0.649 167 0% 112 33% 85 55.2% benign(0.01) tolerated(0.07) neutral(0.320) HMMPfam_PARP,superfamily_ADP-ribosylation TEP1 7011 genome.wustl.edu 37 14 20854288 20854288 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007110.4 -1 reviewed p.R976 1.000 144 0% 114 14.9% 2 0% - - - NULL KLHL33 123103 genome.wustl.edu 37 14 20898744 20898744 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000344581 -1 known p.A31T 1.000 74 0% 84 33.3% 0 - possibly_damaging(0.83) tolerated(0.38) neutral(0.333) superfamily_BTB/POZ_fold APEX1 328 genome.wustl.edu 37 14 20924080 20924080 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001641.2 +1 reviewed p.E22 0.597 105 0% 139 18.7% 195 23% unknown(0) - - NULL APEX1 328 genome.wustl.edu 37 14 20924970 20924970 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438886 +1 known p.A80V 0.978 60 0% 101 26.7% 281 41.9% - - - HMMPfam_Exo_endo_phos,superfamily_DNase I-like APEX1 328 genome.wustl.edu 37 14 20925229 20925229 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438886 +1 known p.L100P 0.996 192 0% 269 17.8% 400 41.2% - - - HMMPfam_Exo_endo_phos,superfamily_DNase I-like TMEM55B 90809 genome.wustl.edu 37 14 20926730 20926730 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100814.1 -1 validated p.Q281H 1.000 152 0% 168 25% 39 38.4% benign(0.004) tolerated(1) - NULL RNASE11 122651 genome.wustl.edu 37 14 21052556 21052556 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145250.3 -1 validated p.I26 0.014 462 0% 245 25.3% 0 - - - - NULL METTL17 64745 genome.wustl.edu 37 14 21458435 21458435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029991.1 +1 validated p.S41F 0.000 90 0% 64 21.9% 14 42.8% possibly_damaging(0.819) deleterious(0) deleterious(0.754) NULL RNASE8 122665 genome.wustl.edu 37 14 21526157 21526157 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138331.1 +1 provisional p.Q36* 0.729 384 0% 171 24.6% 0 - - - - HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like ARHGEF40 55701 genome.wustl.edu 37 14 21542423 21542423 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018071.3 +1 validated p.W178* 1.000 44 0% 80 27.5% 5 60% - - - NULL ARHGEF40 55701 genome.wustl.edu 37 14 21552988 21552988 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018071.3 +1 validated p.R1289H 1.000 225 0% 309 21.7% 11 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00233,superfamily_PH domain-like ARHGEF40 55701 genome.wustl.edu 37 14 21555549 21555549 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018071.3 +1 validated p.S1438 0.449 68 0% 77 19.5% 15 26.6% - - - NULL RPGRIP1 57096 genome.wustl.edu 37 14 21819295 21819295 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020366.3 +1 reviewed p.G1261* 1.000 334 0% 128 25.8% 1 100% - - - NULL CHD8 57680 genome.wustl.edu 37 14 21853930 21853930 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020920.3 -1 reviewed p.R2251W 0.985 172 0% 125 15.2% 76 19.7% unknown(0) deleterious(0) - NULL CHD8 57680 genome.wustl.edu 37 14 21861298 21861298 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020920.3 -1 reviewed p.L1866 0.998 379 0.3% 229 19.7% 51 41.1% - - - NULL CHD8 57680 genome.wustl.edu 37 14 21862322 21862322 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020920.3 -1 reviewed p.I1599V 1.000 123 0% 59 11.9% 28 25% probably_damaging(0.965) deleterious(0.05) deleterious(0.752) NULL CHD8 57680 genome.wustl.edu 37 14 21870246 21870246 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020920.3 -1 reviewed p.A1032V 1.000 401 0% 161 21.1% 7 42.8% probably_damaging(1) tolerated(0.07) deleterious(0.819) superfamily_P-loop containing nucleoside triphosphate hydrolases CHD8 57680 genome.wustl.edu 37 14 21878098 21878098 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020920.3 -1 reviewed p.S480N 1.000 404 0% 151 19.9% 5 40% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Chromo,HMMSmart_SM00298,superfamily_P-loop containing nucleoside triphosphate hydrolases SALL2 6297 genome.wustl.edu 37 14 21991674 21991674 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005407.1 -1 validated p.G730R 0.993 101 0% 68 11.8% 5 0% probably_damaging(0.998) tolerated(0.15) deleterious(0.716) NULL SALL2 6297 genome.wustl.edu 37 14 21992496 21992496 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005407.1 -1 validated p.V456M 0.799 47 0% 43 14% 6 16.6% possibly_damaging(0.868) deleterious(0.01) deleterious(0.743) NULL OR10G3 26533 genome.wustl.edu 37 14 22038440 22038440 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005465.1 -1 validated p.V146M 0.805 184 0% 82 19.5% 0 - possibly_damaging(0.594) deleterious(0.02) deleterious(0.588) HMMPfam_7tm_1,superfamily_SSF81321 MRPL52 122704 genome.wustl.edu 37 14 23303404 23303404 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181307.2 +1 reviewed p.G61* 1.000 211 0% 179 18.4% 348 46.2% - - - NULL RBM23 55147 genome.wustl.edu 37 14 23371498 23371498 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077351.1 -1 reviewed p.R342* 0.945 208 0% 106 22.6% 41 7.3% - - - superfamily_RNA-binding domain RBD RBM23 55147 genome.wustl.edu 37 14 23374221 23374221 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077351.1 -1 reviewed p.A243S 1.000 186 0% 103 22.3% 35 22.8% benign(0.117) tolerated(0.06) neutral(0.332) superfamily_RNA-binding domain RBD RBM23 55147 genome.wustl.edu 37 14 23378770 23378770 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077351.1 -1 reviewed p.Y34F 0.015 1060 0% 488 14.3% 15 20% unknown(0) tolerated(0.66) - NULL C14orf93 60686 genome.wustl.edu 37 14 23465239 23465239 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130706.1 -1 validated p.S279Y 0.996 185 0.5% 182 26.9% 6 0% probably_damaging(0.981) tolerated(0.14) deleterious(0.675) NULL ACIN1 22985 genome.wustl.edu 37 14 23540693 23540693 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000338631 -1 known p.S20N 1.000 102 0% 83 32.5% 15 40% benign(0.202) tolerated(0.06) neutral(0.342) NULL C14orf119 55017 genome.wustl.edu 37 14 23567180 23567180 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017924.2 +1 predicted p.G105C 1.000 352 0% 301 14.3% 126 23% probably_damaging(0.994) deleterious(0.02) deleterious(0.835) NULL SLC7A8 23428 genome.wustl.edu 37 14 23600702 23600702 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012244.2 -1 validated p.R361C 1.000 305 0% 150 23.3% 5 0% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_AA_permease HOMEZ 57594 genome.wustl.edu 37 14 23745810 23745810 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020834.2 -1 validated p.G209 0.962 133 0% 94 22.3% 17 35.2% - - - NULL MYH6 4624 genome.wustl.edu 37 14 23855527 23855527 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002471.3 -1 validated p.L1652 0.999 307 0% 261 23% 0 - - - - HMMPfam_Myosin_tail_1 MYH7 4625 genome.wustl.edu 37 14 23886884 23886884 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000257.2 -1 reviewed p.A1394V 1.000 113 0% 120 26.7% 0 - benign(0.006) tolerated(0.29) neutral(0.029) HMMPfam_Myosin_tail_1,superfamily_Prefoldin MYH7 4625 genome.wustl.edu 37 14 23887427 23887427 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000257.2 -1 reviewed p.E1387D 1.000 107 0% 93 11.8% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMPfam_Myosin_tail_1,superfamily_Prefoldin NGDN 25983 genome.wustl.edu 37 14 23944458 23944458 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042635.1 +1 validated p.A75S 1.000 422 0% 157 15.3% 48 43.7% benign(0.026) tolerated(0.11) neutral(0.273) HMMPfam_Sas10_Utp3 NGDN 25983 genome.wustl.edu 37 14 23945537 23945537 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042635.1 +1 validated p.Q212* 1.000 163 0% 78 12.8% 102 0% - - - NULL AP1G2 8906 genome.wustl.edu 37 14 24032946 24032946 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003917.2 -1 reviewed p.G404D 1.000 109 0% 98 15.3% 78 41% probably_damaging(0.983) tolerated(0.12) deleterious(0.690) HMMPfam_Adaptin_N,superfamily_ARM-type_fold JPH4 84502 genome.wustl.edu 37 14 24040430 24040430 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032452.2 -1 reviewed p.A504T 0.051 27 0% 27 33.3% 3 0% benign(0.164) tolerated(0.43) neutral(0.028) NULL DHRS4L2 317749 genome.wustl.edu 37 14 24459396 24459396 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198083.2 +1 validated p.G45D 1.000 120 0% 107 29.9% 32 34.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains LRRC16B 90668 genome.wustl.edu 37 14 24523004 24523004 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138360.3 +1 validated p.R43* 1.000 91 0% 94 26.6% 0 - - - - NULL PCK2 5106 genome.wustl.edu 37 14 24567684 24567684 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004563.2 +1 reviewed p.G154V 1.000 87 0% 88 20.5% 51 13.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PEPCK,superfamily_PEP carboxykinase N-terminal domain DCAF11 80344 genome.wustl.edu 37 14 24588955 24588955 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025230.4 +1 reviewed p.A314 1.000 431 0% 349 20.6% 98 33.6% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 PSME2 5721 genome.wustl.edu 37 14 24615432 24615432 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002818.2 -1 reviewed p.Q22 0.972 308 0% 445 21.1% 1060 41.1% - - - HMMPfam_PA28_alpha,superfamily_Prot_act_regA RNF31 55072 genome.wustl.edu 37 14 24619330 24619330 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017999.4 +1 validated p.S290 0.314 150 0% 220 11.4% 14 21.4% - - - superfamily_Znf265 first zinc-finger domain RNF31 55072 genome.wustl.edu 37 14 24627352 24627352 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017999.4 +1 validated p.D948V 1.000 212 0% 199 19.6% 71 40.8% benign(0.023) deleterious(0.04) neutral(0.350) NULL RNF31 55072 genome.wustl.edu 37 14 24629074 24629074 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017999.4 +1 validated p.G967 0.983 71 0% 82 13.4% 64 21.8% - - - NULL TM9SF1 10548 genome.wustl.edu 37 14 24658946 24658946 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006405.5 -1 validated p.G499V 1.000 95 0% 113 23.9% 102 47% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_EMP70 MDP1 145553 genome.wustl.edu 37 14 24683309 24683309 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138476.2 -1 provisional p.S151N 1.000 147 0% 132 18.2% 32 37.5% benign(0) tolerated(0.36) neutral(0.020) NULL TINF2 26277 genome.wustl.edu 37 14 24710323 24710323 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099274.1 -1 reviewed e5-1 1.000 225 0% 188 16.5% 1 100% - - - - RABGGTA 5875 genome.wustl.edu 37 14 24737768 24737768 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004581.3 -1 validated p.V320I 0.995 172 0% 209 20.1% 50 28% benign(0.001) tolerated(0.34) neutral(0.023) HMMPfam_RabGGT_insert,superfamily_RabGG_trans_A,superfamily_Prenyl_trans CIDEB 27141 genome.wustl.edu 37 14 24776697 24776697 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014430.2 -1 validated p.E22D 0.918 129 0% 191 15.2% 34 14.7% benign(0) tolerated(0.47) neutral(0.011) superfamily_CAD PB1 domains LTB4R2 56413 genome.wustl.edu 37 14 24780942 24780942 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019839.4 +1 validated p.L389I 0.000 70 0% 115 27% 6 16.6% unknown(0) - - NULL LTB4R 1241 genome.wustl.edu 37 14 24785007 24785007 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143919.2 +1 validated p.R50 1.000 267 0% 408 21.8% 15 26.6% - - - HMMPfam_7tm_1,superfamily_SSF81321 ADCY4 196883 genome.wustl.edu 37 14 24791835 24791835 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139247.2 -1 reviewed p.R808C 1.000 237 0% 214 24.8% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ADCY4 196883 genome.wustl.edu 37 14 24800461 24800461 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139247.2 -1 reviewed p.S257R 1.000 141 0% 161 24.2% 1 0% benign(0.002) tolerated(0.73) neutral(0.002) HMMSmart_SM00044 NYNRIN 57523 genome.wustl.edu 37 14 24878409 24878409 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025081.2 +1 validated p.D470G 0.023 61 0% 67 16.4% 1 0% possibly_damaging(0.494) deleterious(0) deleterious(0.609) NULL NYNRIN 57523 genome.wustl.edu 37 14 24879270 24879270 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025081.2 +1 validated p.R757H 0.001 27 0% 39 30.8% 2 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL NYNRIN 57523 genome.wustl.edu 37 14 24884042 24884042 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025081.2 +1 validated p.V1029 0.001 207 0% 181 11.6% 6 0% - - - NULL KHNYN 23351 genome.wustl.edu 37 14 24901204 24901204 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015299.2 +1 validated p.R246M 0.000 329 0% 299 20.4% 4 0% possibly_damaging(0.496) deleterious(0.01) deleterious(0.571) NULL GZMH 2999 genome.wustl.edu 37 14 25076579 25076579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033423.3 -1 provisional p.R125W 0.000 126 0% 69 29% 78 0% benign(0.031) deleterious(0.02) neutral(0.385) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys NOVA1 4857 genome.wustl.edu 37 14 26917972 26917972 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002515.2 -1 reviewed p.Q239H 1.000 442 0% 282 22.3% 0 - unknown(0) tolerated(0.25) - HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I) NOVA1 4857 genome.wustl.edu 37 14 26949216 26949216 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002515.2 -1 reviewed p.P138 0.986 497 0% 291 18.9% 2 0% - - - NULL SCFD1 23256 genome.wustl.edu 37 14 31164035 31164035 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016106.2 +1 validated p.T433 1.000 219 0% 225 28.4% 37 45.9% - - - HMMPfam_Sec1,superfamily_Sec1-like COCH 1690 genome.wustl.edu 37 14 31354605 31354605 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135058.1 +1 reviewed p.A247T 1.000 356 0% 204 22.5% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like STRN3 29966 genome.wustl.edu 37 14 31364898 31364898 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083893.1 -1 validated p.D732Y 1.000 258 0% 125 22.4% 11 9% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 STRN3 29966 genome.wustl.edu 37 14 31381333 31381333 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083893.1 -1 validated p.R477H 1.000 204 0% 105 17.1% 11 27.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 STRN3 29966 genome.wustl.edu 37 14 31405831 31405831 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083893.1 -1 validated e6-1 1.000 474 0% 126 24.6% 0 - - - - - HEATR5A 25938 genome.wustl.edu 37 14 31762718 31762718 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015473.2 -1 validated p.D1685E 1.000 324 0% 105 13.3% 6 16.6% benign(0.012) tolerated(1) neutral(0.001) superfamily_ARM repeat HEATR5A 25938 genome.wustl.edu 37 14 31762742 31762742 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015473.2 -1 validated p.T1677 0.256 285 0% 92 20.7% 7 42.8% - - - superfamily_ARM repeat HEATR5A 25938 genome.wustl.edu 37 14 31814361 31814361 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015473.2 -1 validated p.A704V 1.000 383 0% 120 10.8% 1 0% benign(0) tolerated(1) - superfamily_ARM repeat ARHGAP5 394 genome.wustl.edu 37 14 32560011 32560011 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030055.1 +1 reviewed p.A46T 1.000 267 0% 155 17.4% 2 50% probably_damaging(0.978) tolerated(0.1) deleterious(0.707) HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases ARHGAP5 394 genome.wustl.edu 37 14 32562181 32562181 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030055.1 +1 reviewed p.A769V 1.000 178 0% 82 24.4% 3 0% benign(0) tolerated(0.08) neutral(0.300) NULL AKAP6 9472 genome.wustl.edu 37 14 33014710 33014710 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004274.4 +1 reviewed p.T284I 0.895 180 0% 47 14.9% 1 0% benign(0.011) deleterious(0) neutral(0.445) NULL EGLN3 112399 genome.wustl.edu 37 14 34419695 34419695 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022073.3 -1 validated p.C88 1.000 19 0% 13 30.8% 4 50% - - - HMMSmart_P4Hc SNX6 58533 genome.wustl.edu 37 14 35045036 35045036 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152233.2 -1 reviewed p.R295* 1.000 206 1% 156 17.9% 38 2.6% - - - HMMPfam_Vps5 BAZ1A 11177 genome.wustl.edu 37 14 35233938 35233938 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013448.2 -1 validated p.D1251N 1.000 930 0% 298 20.1% 30 36.6% possibly_damaging(0.465) deleterious(0.02) deleterious(0.536) NULL BAZ1A 11177 genome.wustl.edu 37 14 35245491 35245491 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013448.2 -1 validated p.L823F 1.000 282 0% 191 24.6% 13 69.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL BAZ1A 11177 genome.wustl.edu 37 14 35331481 35331481 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013448.2 -1 validated p.C54Y 1.000 261 0% 158 23.4% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_WAC_Acf1_DNA_bd SRP54 6729 genome.wustl.edu 37 14 35497369 35497369 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003136.3 +1 validated p.P468L 1.000 372 0% 259 13.9% 136 42.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL PPP2R3C 55012 genome.wustl.edu 37 14 35557156 35557156 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017917.2 -1 provisional e12+1 1.000 322 0% 260 18.1% 2 100% - - - - PPP2R3C 55012 genome.wustl.edu 37 14 35579040 35579040 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017917.2 -1 provisional p.A130D 1.000 360 0% 184 21.7% 12 58.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_EF-hand SSTR1 6751 genome.wustl.edu 37 14 38679200 38679200 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001049.2 +1 reviewed p.S202 1.000 83 0% 113 23% 2 50% - - - HMMPfam_7tm_1,superfamily_SSF81321 PNN 5411 genome.wustl.edu 37 14 39649941 39649941 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002687.3 +1 validated p.A343V 0.526 801 0% 372 26.6% 42 28.5% benign(0.014) tolerated(0.35) neutral(0.021) NULL CTAGE5 4253 genome.wustl.edu 37 14 39796110 39796110 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005930.3 +1 validated p.N572S 0.415 651 0% 268 19.4% 48 60.4% benign(0.137) deleterious(0.03) neutral(0.376) NULL CTAGE5 4253 genome.wustl.edu 37 14 39815153 39815153 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005930.3 +1 validated p.R626K 1.000 408 0% 148 27% 41 48.7% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL FSCB 84075 genome.wustl.edu 37 14 44975258 44975258 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032135.3 -1 validated p.E311D 0.002 124 0% 90 17.8% 0 - benign(0.176) tolerated(0.08) neutral(0.316) NULL FSCB 84075 genome.wustl.edu 37 14 44975794 44975794 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032135.3 -1 validated p.Q133* 1.000 302 0% 222 22.5% 0 - - - - NULL KLHL28 54813 genome.wustl.edu 37 14 45403648 45403648 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017658.3 -1 validated p.G338V 1.000 263 0% 129 17.1% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain PRPF39 55015 genome.wustl.edu 37 14 45579387 45579387 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017922.3 +1 validated p.V423M 1.000 373 0% 126 18.3% 2 0% possibly_damaging(0.77) tolerated(0.17) neutral(0.345) HMMSmart_SM00386,superfamily_TPR-like FANCM 57697 genome.wustl.edu 37 14 45605488 45605488 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020937.2 +1 reviewed p.Y85C 1.000 97 0% 101 26.7% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_P-loop containing nucleoside triphosphate hydrolases MIS18BP1 55320 genome.wustl.edu 37 14 45701952 45701952 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018353.4 -1 validated p.F474V 1.000 92 0% 99 12.1% 8 0% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_SANTA RPL10L 140801 genome.wustl.edu 37 14 47120325 47120325 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080746.2 -1 reviewed p.P205 0.807 91 0% 140 16.4% 0 - - - - NULL MDGA2 161357 genome.wustl.edu 37 14 47311202 47311202 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113498.1 -1 validated p.G935R 1.000 330 0% 160 15.6% 0 - probably_damaging(0.964) tolerated(0.08) deleterious(0.706) NULL RPL36AL 6166 genome.wustl.edu 37 14 50085520 50085520 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001.3 -1 reviewed p.G101 1.000 99 0% 95 29.5% 393 31.2% - - - NULL ARF6 382 genome.wustl.edu 37 14 50360869 50360869 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001663.3 +1 reviewed p.L139M 1.000 90 0% 105 11.4% 275 23.2% benign(0.006) deleterious(0.02) neutral(0.383) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases SOS2 6655 genome.wustl.edu 37 14 50585201 50585201 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006939.2 -1 validated p.P1287H 1.000 315 0% 323 13.6% 11 45.4% benign(0.026) deleterious(0.04) neutral(0.350) NULL SOS2 6655 genome.wustl.edu 37 14 50628286 50628286 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006939.2 -1 validated p.C370W 1.000 600 0% 146 24.7% 4 50% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain NIN 51199 genome.wustl.edu 37 14 51192748 51192748 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020921.3 -1 reviewed p.R2039* 1.000 639 0% 223 22.4% 7 28.5% - - - NULL NIN 51199 genome.wustl.edu 37 14 51202294 51202294 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020921.3 -1 reviewed p.I1939M 1.000 482 0% 189 18.5% 8 25% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL NIN 51199 genome.wustl.edu 37 14 51214742 51214742 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020921.3 -1 reviewed p.L1678F 1.000 569 0% 225 17.3% 11 27.2% possibly_damaging(0.938) tolerated(0.58) neutral(0.389) NULL ABHD12B 145447 genome.wustl.edu 37 14 51352582 51352582 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181814.1 +1 validated p.V134M 0.994 331 0.3% 135 27.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Abhydrolase_1,superfamily_SSF53474 TRIM9 114088 genome.wustl.edu 37 14 51448589 51448589 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015163.5 -1 reviewed p.D612 1.000 395 0% 196 20.9% 0 - - - - HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449 FRMD6 122786 genome.wustl.edu 37 14 52171481 52171481 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042481.1 +1 validated p.R121I 1.000 89 0% 46 19.6% 0 - possibly_damaging(0.461) deleterious(0.01) deleterious(0.556) HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 NID2 22795 genome.wustl.edu 37 14 52477702 52477702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007361.3 -1 validated p.S1205I 0.997 188 0% 155 27.1% 6 0% probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain NID2 22795 genome.wustl.edu 37 14 52481023 52481023 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007361.3 -1 validated p.K1134N 1.000 184 0% 112 22.3% 2 0% benign(0.005) tolerated(0.06) neutral(0.323) HMMSmart_SM00135,superfamily_YWTD domain NID2 22795 genome.wustl.edu 37 14 52485963 52485963 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007361.3 -1 validated p.Q948H 0.163 93 0% 51 13.7% 4 0% benign(0.006) tolerated(0.14) neutral(0.249) HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain NID2 22795 genome.wustl.edu 37 14 52526962 52526962 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007361.3 -1 validated p.N216S 0.997 88 0% 68 13.2% 0 - benign(0.183) tolerated(0.09) neutral(0.314) HMMPfam_NIDO,HMMSmart_SM00539 PTGER2 5732 genome.wustl.edu 37 14 52794090 52794090 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000956.3 +1 reviewed p.C332Y 1.000 271 0% 201 19.4% 1 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_SSF81321 TXNDC16 57544 genome.wustl.edu 37 14 52906051 52906051 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020784.2 -1 validated p.P689T 1.000 414 0% 179 26.3% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GPR137C 283554 genome.wustl.edu 37 14 53066897 53066897 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099652.1 +1 provisional p.A185 0.672 665 0% 233 18.9% 0 - - - - NULL BMP4 652 genome.wustl.edu 37 14 54417223 54417223 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001202.3 -1 reviewed p.V252I 1.000 54 0% 84 26.2% 5 0% possibly_damaging(0.6) deleterious(0.01) deleterious(0.613) HMMPfam_TGFb_propeptide CNIH 10175 genome.wustl.edu 37 14 54897100 54897100 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005776.2 -1 validated p.S96R 1.000 371 0% 217 17.5% 92 45.6% possibly_damaging(0.922) deleterious(0.05) deleterious(0.717) HMMPfam_Cornichon CNIH 10175 genome.wustl.edu 37 14 54898924 54898924 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005776.2 -1 validated p.E55 1.000 136 0% 116 23.3% 115 42.6% - - - HMMPfam_Cornichon CGRRF1 10668 genome.wustl.edu 37 14 54989273 54989273 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006568.2 +1 validated p.G69D 1.000 487 0% 313 18.8% 8 37.5% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL WDHD1 11169 genome.wustl.edu 37 14 55429243 55429243 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007086.2 -1 reviewed p.N892H 0.000 153 0% 88 25% 17 29.4% benign(0.008) tolerated(0.12) neutral(0.261) superfamily_WD40_like FBXO34 55030 genome.wustl.edu 37 14 55817874 55817874 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017943.3 +1 validated p.G256* 0.988 169 0% 55 30.9% 11 36.3% - - - NULL FBXO34 55030 genome.wustl.edu 37 14 55818613 55818613 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017943.3 +1 validated p.T502I 0.000 169 0% 44 22.7% 10 20% benign(0.024) tolerated(0.08) neutral(0.301) NULL ATG14 22863 genome.wustl.edu 37 14 55852658 55852658 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014924.3 -1 provisional p.R189H 0.023 407 0% 152 28.9% 5 60% benign(0.009) tolerated(0.19) neutral(0.050) HMMPfam_DUF2355 KTN1 3895 genome.wustl.edu 37 14 56104043 56104043 + Missense_Mutation SNP A A C rs189818578 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079521.1 +1 validated p.K559N 1.000 313 0% 91 20.9% 29 41.3% benign(0.133) tolerated(0.2) neutral(0.060) NULL PELI2 57161 genome.wustl.edu 37 14 56763543 56763543 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021255.2 +1 validated p.W308G 1.000 80 0% 52 28.8% 5 40% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_Pellino EXOC5 10640 genome.wustl.edu 37 14 57713452 57713452 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006544.3 -1 reviewed p.Q83* 1.000 497 0% 201 22.9% 5 0% - - - NULL C14orf37 145407 genome.wustl.edu 37 14 58604908 58604908 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001872.2 -1 predicted p.P390H 0.037 155 0% 131 25.2% 6 66.6% benign(0.269) deleterious(0.05) neutral(0.374) NULL ACTR10 55860 genome.wustl.edu 37 14 58697184 58697184 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018477.2 +1 validated p.D286N 1.000 151 0% 128 24.2% 42 28.5% probably_damaging(1) tolerated(0.35) deleterious(0.520) HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 ACTR10 55860 genome.wustl.edu 37 14 58701127 58701127 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018477.2 +1 validated p.R371H 1.000 310 0% 193 24.4% 81 59.2% possibly_damaging(0.912) tolerated(0.1) deleterious(0.650) HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 DAAM1 23002 genome.wustl.edu 37 14 59730206 59730206 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014992.1 +1 reviewed p.R4K 1.000 275 0% 146 19.9% 1 0% unknown(0) tolerated(0.15) - NULL C14orf135 64430 genome.wustl.edu 37 14 60585324 60585324 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022495.5 +1 validated p.C385Y 0.997 234 0% 79 21.5% 12 25% probably_damaging(0.961) deleterious(0.01) deleterious(0.810) NULL DHRS7 51635 genome.wustl.edu 37 14 60616078 60616078 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016029.2 -1 validated p.S322I 0.986 431 0% 172 22.1% 87 32.1% benign(0.15) tolerated(0.1) neutral(0.299) NULL SIX1 6495 genome.wustl.edu 37 14 61115495 61115495 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005982.3 -1 reviewed p.V138A 1.000 63 0% 72 22.2% 7 71.4% benign(0.023) tolerated(0.6) neutral(0.005) HMMSmart_SM00389,superfamily_Homeodomain-like PRKCH 5583 genome.wustl.edu 37 14 61952245 61952245 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006255.3 +1 reviewed p.F435S 1.000 510 0% 357 25.2% 10 10% possibly_damaging(0.803) deleterious(0) deleterious(0.747) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SYT16 83851 genome.wustl.edu 37 14 62547684 62547684 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031914.2 +1 validated p.G376S 1.000 121 0% 68 11.8% 0 - benign(0.024) deleterious(0.04) neutral(0.350) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB KCNH5 27133 genome.wustl.edu 37 14 63174624 63174624 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139318.3 -1 reviewed p.P857T 1.000 508 0% 517 20.9% 0 - benign(0.028) tolerated(0.22) neutral(0.044) NULL KCNH5 27133 genome.wustl.edu 37 14 63174949 63174949 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139318.3 -1 reviewed p.T748 0.004 232 0% 206 12.6% 0 - - - - NULL PPP2R5E 5529 genome.wustl.edu 37 14 63851195 63851195 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006246.2 -1 reviewed p.S390I 1.000 331 0% 147 27.9% 22 31.8% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_B56,superfamily_ARM repeat PPP2R5E 5529 genome.wustl.edu 37 14 64006376 64006376 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006246.2 -1 reviewed p.S10P 1.000 312 0% 383 20.6% 5 60% benign(0.001) tolerated(0.77) neutral(0.001) NULL SYNE2 23224 genome.wustl.edu 37 14 64457780 64457780 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182914.2 +1 reviewed p.Q865K 0.992 161 0% 75 13.3% 1 0% benign(0.125) - - NULL SYNE2 23224 genome.wustl.edu 37 14 64599119 64599119 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182914.2 +1 reviewed p.S4826L 0.075 248 0% 109 19.3% 5 40% unknown(0) - - NULL SYNE2 23224 genome.wustl.edu 37 14 64679609 64679609 + Silent SNP C C T rs146572710 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182914.2 +1 reviewed p.S6314 0.957 184 0% 128 27.3% 60 51.6% - - - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin AKAP5 9495 genome.wustl.edu 37 14 64935975 64935975 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004857.3 +1 reviewed p.A288E 0.000 122 0% 149 12.1% 3 33.3% benign(0.324) tolerated(0.71) neutral(0.103) NULL HSPA2 3306 genome.wustl.edu 37 14 65008761 65008761 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021979.3 +1 validated p.D398 1.000 31 0% 30 23.3% 15 20% - - - HMMPfam_HSP70,superfamily_SSF100920 ENSG00000249603 0 genome.wustl.edu 37 14 65067073 65067073 + RNA SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000509438 +1 novel NULL 1.000 313 0% 351 27.9% 0 - - - - - ENSG00000249603 0 genome.wustl.edu 37 14 65067541 65067541 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000509438 +1 novel NULL 1.000 254 0% 392 24% 0 - - - - - ENSG00000238163 0 genome.wustl.edu 37 14 65067935 65067935 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428403 -1 known p.S135 0.993 131 0% 190 27.9% 4 0% - - - HMMPfam_NUP50 PLEKHG3 26030 genome.wustl.edu 37 14 65209864 65209864 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015549.1 +1 validated p.A979T 0.000 17 0% 30 26.7% 27 33.3% benign(0.06) deleterious(0) neutral(0.449) NULL SPTB 6710 genome.wustl.edu 37 14 65289820 65289820 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389723 -1 known p.P2H 1.000 76 0% 48 16.7% 0 - probably_damaging(0.965) deleterious(0) deleterious(0.851) NULL MAX 4149 genome.wustl.edu 37 14 65544579 65544579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145116.1 -1 reviewed p.S116L 0.869 212 0% 130 28.5% 1 0% benign(0.017) deleterious(0) neutral(0.445) NULL MAX 4149 genome.wustl.edu 37 14 65569033 65569033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002382.3 -1 reviewed p.V9M 1.000 39 0% 64 25% 43 37.2% probably_damaging(0.97) deleterious(0.05) deleterious(0.758) NULL FUT8 2530 genome.wustl.edu 37 14 66200007 66200007 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178154.1 +1 reviewed p.N440H 1.000 268 0% 138 24.6% 33 42.4% benign(0.026) deleterious(0.01) neutral(0.407) NULL PLEKHH1 57475 genome.wustl.edu 37 14 68040525 68040525 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020715.2 +1 validated p.V616A 1.000 220 0% 148 16.2% 1 100% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like PLEKHH1 57475 genome.wustl.edu 37 14 68050564 68050564 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020715.2 +1 validated p.R1178M 1.000 61 0% 45 13.3% 3 0% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 VTI1B 10490 genome.wustl.edu 37 14 68123221 68123221 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006370.2 -1 validated p.R151Q 1.000 272 0% 176 20.5% 202 33.6% benign(0.299) tolerated(0.13) neutral(0.345) HMMSmart_SM00397,HMMPfam_V-SNARE RDH12 145226 genome.wustl.edu 37 14 68191259 68191259 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152443.2 +1 reviewed p.G46 0.915 593 0% 260 20.8% 0 - - - - HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains ZFYVE26 23503 genome.wustl.edu 37 14 68215313 68215313 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015346.3 -1 reviewed p.L2487S 1.000 51 0% 19 21.1% 36 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZFYVE26 23503 genome.wustl.edu 37 14 68228122 68228122 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015346.3 -1 reviewed p.H2183 1.000 449 0% 134 21.6% 15 53.3% - - - NULL ZFYVE26 23503 genome.wustl.edu 37 14 68234498 68234498 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015346.3 -1 reviewed p.A1905S 0.999 527 0% 192 14.1% 10 50% probably_damaging(0.954) tolerated(0.17) neutral(0.457) NULL ZFYVE26 23503 genome.wustl.edu 37 14 68249851 68249851 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015346.3 -1 reviewed p.R1340S 0.389 78 0% 47 23.4% 2 0% possibly_damaging(0.858) tolerated(0.26) neutral(0.365) NULL ZFYVE26 23503 genome.wustl.edu 37 14 68252599 68252599 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015346.3 -1 reviewed p.L1094 0.998 228 0% 114 21.1% 3 0% - - - NULL ENSG00000207089 0 genome.wustl.edu 37 14 69202682 69202682 + RNA SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000384361 -1 novel NULL 0.428 195 0% 207 30.4% 0 - - - - - ACTN1 87 genome.wustl.edu 37 14 69351509 69351509 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130004.1 -1 reviewed p.R493* 1.000 152 0% 208 16.8% 66 0% - - - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin ACTN1 87 genome.wustl.edu 37 14 69387726 69387726 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130004.1 -1 reviewed p.E113K 1.000 314 0% 165 19.4% 55 0% possibly_damaging(0.618) deleterious(0) deleterious(0.659) PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology GALNTL1 57452 genome.wustl.edu 37 14 69787492 69787492 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020692.2 +1 validated p.A81D 0.999 85 0% 100 16% 1 0% benign(0.427) tolerated(0.5) neutral(0.149) superfamily_Nucleotide-diphospho-sugar transferases GALNTL1 57452 genome.wustl.edu 37 14 69814693 69814693 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020692.2 +1 validated p.M505L 0.001 141 0% 75 26.7% 0 - benign(0) tolerated(0.36) neutral(0.020) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins C14orf162 56936 genome.wustl.edu 37 14 70037811 70037811 + RNA SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024630.1 -1 validated NULL 0.004 133 0% 148 21.6% 0 - - - - - SLC10A1 6554 genome.wustl.edu 37 14 70252894 70252894 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003049.3 -1 validated p.L163M 0.379 535 0.2% 258 20.2% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_SBF SLC8A3 6547 genome.wustl.edu 37 14 70513020 70513020 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183002.1 -1 reviewed p.A810T 0.970 64 0% 31 29% 0 - benign(0.426) deleterious(0) deleterious(0.583) HMMPfam_Na_Ca_ex SLC8A3 6547 genome.wustl.edu 37 14 70515743 70515743 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183002.1 -1 reviewed p.E716D 0.917 152 0.7% 105 11.4% 0 - possibly_damaging(0.911) tolerated(0.98) neutral(0.363) NULL SLC8A3 6547 genome.wustl.edu 37 14 70634342 70634342 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183002.1 -1 reviewed p.R266 0.992 698 0% 231 17.7% 0 - - - - NULL SLC8A3 6547 genome.wustl.edu 37 14 70634857 70634857 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183002.1 -1 reviewed p.A95T 1.000 205 0% 65 26.2% 0 - probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Na_Ca_ex ENSG00000235812 0 genome.wustl.edu 37 14 70712656 70712656 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433248 -1 known p.L404 0.000 373 0% 312 23.7% 0 - - - - HMMPfam_ADAM_CR,HMMSmart_SM00608 ENSG00000235812 0 genome.wustl.edu 37 14 70712893 70712893 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433248 -1 known p.P325 0.936 94 0% 95 17.9% 0 - - - - HMMPfam_ADAM_CR,HMMSmart_SM00608 ADAM20 8748 genome.wustl.edu 37 14 70989381 70989381 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003814.4 -1 reviewed p.C748 0.012 649 0% 147 22.4% 0 - - - - NULL ADAM20 8748 genome.wustl.edu 37 14 70990775 70990775 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003814.4 -1 reviewed p.V284L 0.000 235 0% 50 22% 0 - benign(0.067) tolerated(0.38) neutral(0.022) "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" MAP3K9 4293 genome.wustl.edu 37 14 71205030 71205030 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033141.2 -1 validated p.P592 0.000 206 0% 190 26.3% 1 100% - - - NULL MAP3K9 4293 genome.wustl.edu 37 14 71206811 71206811 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033141.2 -1 validated p.R546 0.991 428 0% 312 20.5% 1 0% - - - NULL MAP3K9 4293 genome.wustl.edu 37 14 71215624 71215624 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033141.2 -1 validated p.K416 1.000 359 0% 171 22.2% 1 0% - - - NULL PCNX 22990 genome.wustl.edu 37 14 71444307 71444307 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014982.2 +1 validated p.E418G 0.996 188 0% 103 15.5% 2 100% unknown(0) deleterious(0.04) - NULL PCNX 22990 genome.wustl.edu 37 14 71444498 71444498 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014982.2 +1 validated p.L482F 0.963 79 0% 46 34.8% 3 100% unknown(0) tolerated(0.09) - NULL PCNX 22990 genome.wustl.edu 37 14 71492878 71492878 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014982.2 +1 validated p.C1076 0.998 450 0% 143 27.3% 5 40% - - - NULL PCNX 22990 genome.wustl.edu 37 14 71500680 71500680 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014982.2 +1 validated p.T1234M 0.974 86 0% 48 20.8% 3 33.3% probably_damaging(0.957) tolerated(0.22) neutral(0.443) NULL SIPA1L1 26037 genome.wustl.edu 37 14 72196899 72196899 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015556.1 +1 provisional p.A1602E 0.813 207 0% 110 25.5% 28 46.4% possibly_damaging(0.701) deleterious(0.01) deleterious(0.657) NULL SIPA1L1 26037 genome.wustl.edu 37 14 72205752 72205752 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015556.1 +1 provisional p.A1763 1.000 152 0% 92 19.6% 47 42.5% - - - NULL RGS6 9628 genome.wustl.edu 37 14 72961965 72961965 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004296.4 +1 validated p.E320 0.997 694 0% 164 16.5% 0 - - - - NULL RBM25 58517 genome.wustl.edu 37 14 73570174 73570174 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021239.2 +1 validated p.R381H 1.000 148 0.7% 70 25.7% 55 40% unknown(0) tolerated(0.09) - superfamily_RNA-binding domain RBD PAPLN 89932 genome.wustl.edu 37 14 73739314 73739314 + Missense_Mutation SNP G G T rs11626824 byCluster;byHapMap TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173462.3 +1 validated p.S1233I 1.000 198 0% 189 24.9% 4 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PLAC HEATR4 399671 genome.wustl.edu 37 14 73978789 73978789 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203309.1 -1 provisional p.D446 0.000 340 0% 122 15.6% 0 - - - - superfamily_ARM-type_fold ACOT1 641371 genome.wustl.edu 37 14 74009923 74009923 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037161.1 +1 validated p.V277A 0.000 386 0% 310 18.4% 45 22.2% benign(0) tolerated(0.48) neutral(0.011) HMMPfam_BAAT_C,superfamily_SSF53474 ACOT2 10965 genome.wustl.edu 37 14 74041781 74041781 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006821.4 +1 validated p.V339A 0.000 123 0% 111 15.3% 6 16.6% benign(0) tolerated(0.47) neutral(0.011) HMMPfam_BAAT_C,superfamily_alpha/beta-Hydrolases ABCD4 5826 genome.wustl.edu 37 14 74757034 74757034 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005050.3 -1 reviewed p.S429 0.468 167 0% 116 14.7% 33 18.1% - - - HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540 VRTN 55237 genome.wustl.edu 37 14 74823810 74823810 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018228.2 +1 validated p.T108 0.000 57 0% 37 13.5% 1 0% - - - NULL LTBP2 4053 genome.wustl.edu 37 14 74969990 74969990 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000428.2 -1 reviewed p.T1607M 0.999 133 0% 133 12.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_TB,superfamily_TB module/8-cys domain LTBP2 4053 genome.wustl.edu 37 14 74970735 74970735 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000428.2 -1 reviewed p.F1492 0.372 109 0.9% 116 25% 9 0% - - - HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin LTBP2 4053 genome.wustl.edu 37 14 74974747 74974747 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000428.2 -1 reviewed p.N1235S 1.000 67 0% 103 24.3% 3 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin LTBP2 4053 genome.wustl.edu 37 14 75019632 75019632 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000428.2 -1 reviewed p.G385 0.505 114 0% 86 20.9% 2 0% - - - NULL KIAA0317 9870 genome.wustl.edu 37 14 75139614 75139614 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039479.1 -1 validated p.R448* 0.975 310 0.3% 103 23.3% 4 0% - - - NULL YLPM1 56252 genome.wustl.edu 37 14 75248221 75248221 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019589.2 +1 validated p.T492N 1.000 341 0% 177 23.7% 8 25% unknown(0) deleterious(0) - NULL YLPM1 56252 genome.wustl.edu 37 14 75264760 75264760 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019589.2 +1 validated p.E920D 0.996 138 0% 51 29.4% 7 42.8% benign(0.182) tolerated(0.4) neutral(0.033) NULL YLPM1 56252 genome.wustl.edu 37 14 75279438 75279438 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019589.2 +1 validated p.V1819M 1.000 127 0% 64 17.2% 24 45.8% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL DLST 1743 genome.wustl.edu 37 14 75357763 75357763 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001933.4 +1 validated p.S112Y 1.000 237 0% 158 19% 49 26.5% possibly_damaging(0.77) deleterious(0.01) deleterious(0.692) HMMPfam_Biotin_lipoyl,PatternScan_LIPOYL,superfamily_Single hybrid motif EIF2B2 8892 genome.wustl.edu 37 14 75469744 75469744 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014239.3 +1 reviewed p.S17R 0.996 45 0% 50 14% 27 55.5% benign(0.027) tolerated(0.16) neutral(0.061) NULL MLH3 27030 genome.wustl.edu 37 14 75513530 75513530 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040108.1 -1 reviewed p.Q943H 0.000 325 0% 420 24.3% 7 28.5% unknown(0) deleterious(0) - NULL ACYP1 97 genome.wustl.edu 37 14 75530229 75530229 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001107.3 -1 reviewed p.V10M 1.000 479 0% 365 23% 41 39% probably_damaging(0.999) tolerated(0.07) deleterious(0.809) HMMPfam_Acylphosphatase,superfamily_Acylphosphatase-like FOS 2353 genome.wustl.edu 37 14 75747991 75747991 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005252.3 +1 reviewed p.A336D 1.000 56 0% 65 29.2% 134 36.5% benign(0.006) tolerated(0.06) neutral(0.323) NULL TGFB3 7043 genome.wustl.edu 37 14 76437537 76437537 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003239.2 -1 reviewed p.T193I 0.998 134 0% 69 24.6% 5 20% benign(0.111) tolerated(0.52) neutral(0.017) HMMPfam_TGFb_propeptide C14orf118 55668 genome.wustl.edu 37 14 76638294 76638294 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017926.2 +1 validated p.R279I 1.000 298 0% 142 25.4% 7 28.5% probably_damaging(0.959) tolerated(0.12) deleterious(0.663) NULL ESRRB 2103 genome.wustl.edu 37 14 76949044 76949044 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004452.3 +1 reviewed p.L243 1.000 150 0% 91 28.6% 0 - - - - superfamily_Str_ncl_receptor ANGEL1 23357 genome.wustl.edu 37 14 77256995 77256995 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015305.3 -1 validated p.I604T 1.000 285 0% 181 12.2% 4 25% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos ANGEL1 23357 genome.wustl.edu 37 14 77269726 77269726 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015305.3 -1 validated p.D536N 1.000 172 0% 134 19.4% 1 0% possibly_damaging(0.679) deleterious(0) deleterious(0.686) HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos ANGEL1 23357 genome.wustl.edu 37 14 77273081 77273081 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015305.3 -1 validated p.R353Q 1.000 144 0.7% 129 25.6% 6 50% possibly_damaging(0.777) tolerated(0.32) neutral(0.314) HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos TMEM63C 57156 genome.wustl.edu 37 14 77686361 77686361 + Silent SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020431.2 +1 validated p.L81 1.000 166 0% 134 17.2% 0 - - - - NULL NOXRED1 122945 genome.wustl.edu 37 14 77872463 77872463 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113475.1 -1 validated p.N233S 0.983 242 0% 156 10.9% 1 0% benign(0.113) deleterious(0.01) neutral(0.415) NULL AHSA1 10598 genome.wustl.edu 37 14 77931024 77931024 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012111.2 +1 validated p.R186C 0.995 237 0% 182 24.2% 256 40.2% benign(0) tolerated(0.07) neutral(0.319) NULL ISM2 145501 genome.wustl.edu 37 14 77942132 77942132 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199296.2 -1 reviewed p.G508S 0.999 44 0% 37 24.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AMOP,HMMSmart_SM00723 ADCK1 57143 genome.wustl.edu 37 14 78288837 78288837 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020421.3 +1 validated p.E65D 1.000 180 0% 72 12.5% 12 58.3% possibly_damaging(0.795) tolerated(0.16) neutral(0.358) NULL NRXN3 9369 genome.wustl.edu 37 14 79270028 79270028 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004796.4 +1 reviewed p.T331A 1.000 232 0% 62 16.1% 0 - benign(0.143) deleterious(0) neutral(0.457) superfamily_ConA_like_lec_gl NRXN3 9369 genome.wustl.edu 37 14 79433640 79433640 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004796.4 +1 reviewed p.N583T 1.000 194 0% 89 19.1% 0 - possibly_damaging(0.445) deleterious(0.04) deleterious(0.494) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 NRXN3 9369 genome.wustl.edu 37 14 80327991 80327991 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440563 +1 known p.R533H 1.000 48 0% 46 13% 0 - probably_damaging(1) deleterious(0.05) deleterious(0.845) NULL CEP128 145508 genome.wustl.edu 37 14 81251622 81251622 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152446.3 -1 validated p.A610S 0.132 561 0% 302 24.5% 5 20% unknown(0) tolerated(0.76) - NULL CEP128 145508 genome.wustl.edu 37 14 81380696 81380696 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152446.3 -1 validated p.Y68 0.779 407 0% 267 15.4% 3 0% - - - NULL TSHR 7253 genome.wustl.edu 37 14 81609296 81609296 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000369.2 +1 reviewed p.S298 0.427 223 0.4% 132 17.4% 1 0% - - - superfamily_L domain-like TSHR 7253 genome.wustl.edu 37 14 81609451 81609451 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000369.2 +1 reviewed p.A350D 1.000 662 0% 296 26.7% 0 - benign(0.002) tolerated(0.63) neutral(0.004) NULL TSHR 7253 genome.wustl.edu 37 14 81610124 81610124 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000369.2 +1 reviewed p.T574 0.001 687 0% 244 18.9% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SEL1L 6400 genome.wustl.edu 37 14 81945992 81945992 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000261258 -1 known p.R74C 0.000 186 0% 125 20.8% 16 43.7% possibly_damaging(0.905) deleterious(0) deleterious(0.804) NULL SEL1L 6400 genome.wustl.edu 37 14 81964775 81964775 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005065.4 -1 validated p.R319C 1.000 199 0% 123 30.1% 12 8.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like FLRT2 23768 genome.wustl.edu 37 14 86089275 86089275 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013231.4 +1 reviewed p.G473S 1.000 173 0% 118 22% 0 - benign(0.002) tolerated(0.05) neutral(0.345) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like FLRT2 23768 genome.wustl.edu 37 14 86089327 86089327 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013231.4 +1 reviewed p.R490Q 1.000 147 0% 118 24.6% 0 - probably_damaging(0.999) tolerated(0.3) deleterious(0.519) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like GPR65 8477 genome.wustl.edu 37 14 88477851 88477851 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003608.3 +1 validated p.E220D 0.978 138 0% 67 25.4% 20 0% benign(0.151) deleterious(0.02) neutral(0.397) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SPATA7 55812 genome.wustl.edu 37 14 88892622 88892622 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018418.4 +1 reviewed p.M140T 0.796 91 0% 33 21.2% 11 45.4% benign(0.002) deleterious(0.02) neutral(0.383) NULL SPATA7 55812 genome.wustl.edu 37 14 88899513 88899513 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018418.4 +1 reviewed p.D373N 1.000 347 0% 228 14.9% 9 33.3% benign(0.106) tolerated(0.42) neutral(0.022) NULL EML5 161436 genome.wustl.edu 37 14 89161745 89161745 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183387.2 -1 validated p.L800F 0.982 400 0% 207 10.1% 0 - benign(0.011) tolerated(0.27) neutral(0.034) HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40 KCNK13 56659 genome.wustl.edu 37 14 90650888 90650888 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022054.2 +1 reviewed p.L256 0.997 224 0% 114 24.6% 1 0% - - - HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels PSMC1 5700 genome.wustl.edu 37 14 90731418 90731418 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002802.2 +1 reviewed p.S200F 1.000 491 0% 352 24.1% 70 55.7% possibly_damaging(0.455) deleterious(0) deleterious(0.594) superfamily_P-loop containing nucleoside triphosphate hydrolases C14orf102 55051 genome.wustl.edu 37 14 90754663 90754663 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017970.2 -1 validated p.R1019K 0.998 443 0% 321 18.7% 13 38.4% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL C14orf102 55051 genome.wustl.edu 37 14 90756647 90756647 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017970.2 -1 validated p.V716A 0.997 169 0% 118 19.5% 7 28.5% possibly_damaging(0.761) tolerated(0.26) neutral(0.316) superfamily_Prenyl_trans RPS6KA5 9252 genome.wustl.edu 37 14 91360784 91360784 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004755.2 -1 validated p.G539 0.783 282 0% 161 26.1% 2 100% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase RPS6KA5 9252 genome.wustl.edu 37 14 91413895 91413895 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004755.2 -1 validated e4-1 1.000 182 0% 81 30.9% 0 - - - - - C14orf159 80017 genome.wustl.edu 37 14 91655295 91655295 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102368.1 +1 validated p.L326M 1.000 164 0% 128 22.7% 42 33.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL C14orf159 80017 genome.wustl.edu 37 14 91662787 91662787 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102368.1 +1 validated p.L422M 0.996 190 0% 83 31.3% 109 52.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GPR68 8111 genome.wustl.edu 37 14 91700896 91700896 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003485.3 -1 validated p.N177D 0.048 47 0% 63 11.1% 15 0% benign(0) tolerated(0.68) neutral(0.002) HMMPfam_7tm_1,superfamily_SSF81321 GPR68 8111 genome.wustl.edu 37 14 91700900 91700900 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003485.3 -1 validated p.D175 0.714 49 0% 66 28.8% 16 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 CCDC88C 440193 genome.wustl.edu 37 14 91760588 91760588 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080414.2 -1 validated p.Q1347H 1.000 548 0.2% 438 11.6% 20 30% probably_damaging(0.998) tolerated(0.13) deleterious(0.727) NULL CCDC88C 440193 genome.wustl.edu 37 14 91763786 91763786 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080414.2 -1 validated p.A1277T 0.213 213 0% 226 19.9% 12 33.3% benign(0) tolerated(1) - NULL CCDC88C 440193 genome.wustl.edu 37 14 91770293 91770293 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080414.2 -1 validated p.S1129 0.170 46 0% 58 20.7% 10 40% - - - NULL CCDC88C 440193 genome.wustl.edu 37 14 91804869 91804869 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080414.2 -1 validated p.D285 0.683 136 0% 141 17.7% 2 0% - - - superfamily_Prefoldin FBLN5 10516 genome.wustl.edu 37 14 92349361 92349361 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006329.3 -1 reviewed p.G267S 1.000 226 0% 88 19.3% 25 8% probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin ATXN3 4287 genome.wustl.edu 37 14 92560142 92560142 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004993.5 -1 reviewed p.E90* 1.000 235 0% 205 10.2% 3 0% - - - HMMPfam_Josephin CPSF2 53981 genome.wustl.edu 37 14 92620714 92620714 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017437.1 +1 validated p.V385M 1.000 224 0.9% 82 23.2% 20 50% probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL RIN3 79890 genome.wustl.edu 37 14 93043758 93043758 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024832.3 +1 validated p.H101 1.000 171 0% 75 17.3% 19 15.7% - - - HMMSmart_SM00252,superfamily_SH2 domain LGMN 5641 genome.wustl.edu 37 14 93179217 93179217 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008530.1 -1 reviewed e7-1 1.000 56 0% 65 29.2% 0 - - - - - GOLGA5 9950 genome.wustl.edu 37 14 93264258 93264258 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005113.2 +1 reviewed p.S159N 0.979 103 0% 122 32.8% 32 40.6% benign(0.005) tolerated(0.43) neutral(0.013) NULL CHGA 1113 genome.wustl.edu 37 14 93398825 93398825 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001275.3 +1 reviewed p.E307K 0.991 67 0% 78 17.9% 750 71.8% possibly_damaging(0.787) tolerated(0.14) deleterious(0.544) HMMPfam_Granin ITPK1 3705 genome.wustl.edu 37 14 93424559 93424559 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142593.1 -1 validated p.S219 0.040 264 0% 235 16.2% 194 38.6% - - - HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like ITPK1 3705 genome.wustl.edu 37 14 93429126 93429126 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142593.1 -1 validated p.L145M 1.000 62 0% 68 22.1% 164 50.6% benign(0.026) deleterious(0.02) neutral(0.384) HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like UBR7 55148 genome.wustl.edu 37 14 93684909 93684909 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175748.3 +1 validated p.R213Q 0.990 191 0% 122 27% 26 50% benign(0.199) tolerated(0.59) neutral(0.024) NULL UBR7 55148 genome.wustl.edu 37 14 93686681 93686681 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175748.3 +1 validated p.Q349H 1.000 175 0% 184 23.9% 41 36.5% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL BTBD7 55727 genome.wustl.edu 37 14 93717835 93717835 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002860.2 -1 validated p.P639H 1.000 261 0% 138 25.4% 6 66.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL BTBD7 55727 genome.wustl.edu 37 14 93717956 93717956 + Missense_Mutation SNP G G A rs147262200 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002860.2 -1 validated p.R599C 1.000 222 0% 111 9.9% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL UNC79 57578 genome.wustl.edu 37 14 93963522 93963522 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020818.3 +1 validated p.A86V 1.000 265 0% 100 20% 0 - benign(0.4) deleterious(0) deleterious(0.573) NULL UNC79 57578 genome.wustl.edu 37 14 94008840 94008840 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020818.3 +1 validated p.T341M 1.000 242 0.4% 126 29.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL DDX24 57062 genome.wustl.edu 37 14 94517573 94517573 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020414.3 -1 reviewed p.Q848H 0.371 230 0% 125 17.6% 96 1% unknown(0) deleterious(0.03) - NULL DDX24 57062 genome.wustl.edu 37 14 94517774 94517774 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020414.3 -1 reviewed p.R781 1.000 229 0% 99 22.2% 151 52.9% - - - NULL IFI27L2 83982 genome.wustl.edu 37 14 94594141 94594141 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032036.2 -1 validated p.E130K 0.039 569 0.2% 337 18.1% 17 23.5% benign(0) tolerated(1) - NULL PPP4R4 57718 genome.wustl.edu 37 14 94716515 94716515 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058237.1 +1 reviewed p.L540V 1.000 399 0% 181 26.5% 0 - possibly_damaging(0.541) tolerated(0.12) neutral(0.444) superfamily_ARM repeat SERPINA10 51156 genome.wustl.edu 37 14 94750365 94750365 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100607.1 -1 reviewed p.I424 0.997 339 0.3% 156 17.9% 0 - - - - HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINA1 5265 genome.wustl.edu 37 14 94849423 94849423 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000295.4 -1 reviewed p.T51I 0.526 430 0% 155 12.3% 849 14.2% benign(0.229) deleterious(0.02) neutral(0.406) HMMPfam_Serpin,superfamily_Serpins SERPINA9 327657 genome.wustl.edu 37 14 94936107 94936107 + Missense_Mutation SNP G G T rs4905204 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175739.3 -1 validated p.A42D 0.000 159 0% 101 23.8% 0 - benign(0.009) tolerated(0.26) neutral(0.035) superfamily_Serpins GSC 145258 genome.wustl.edu 37 14 95234882 95234882 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173849.2 -1 reviewed p.A240 0.572 135 0% 181 23.8% 3 66.6% - - - NULL DICER1 23405 genome.wustl.edu 37 14 95571561 95571561 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030621.3 -1 reviewed p.A1039D 1.000 131 0% 69 17.4% 5 20% probably_damaging(0.953) tolerated(0.47) neutral(0.408) HMMPfam_PAZ,superfamily_SSF101690 CLMN 79789 genome.wustl.edu 37 14 95670573 95670573 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024734.3 -1 validated p.A371 0.000 350 0% 133 18% 2 0% - - - NULL BDKRB2 624 genome.wustl.edu 37 14 96707129 96707129 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000623.3 +1 reviewed p.R155H 1.000 93 0% 44 15.9% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like ATG2B 55102 genome.wustl.edu 37 14 96756130 96756130 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018036.5 -1 validated p.T1957A 1.000 248 0% 111 11.7% 9 33.3% probably_damaging(0.994) deleterious(0.04) deleterious(0.801) NULL ATG2B 55102 genome.wustl.edu 37 14 96761417 96761417 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018036.5 -1 validated p.S1769Y 1.000 175 0% 123 17.9% 4 50% benign(0.001) tolerated(0.05) neutral(0.345) NULL ATG2B 55102 genome.wustl.edu 37 14 96769449 96769449 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018036.5 -1 validated p.F1662L 1.000 299 0% 186 24.7% 3 100% possibly_damaging(0.531) deleterious(0) deleterious(0.623) NULL ATG2B 55102 genome.wustl.edu 37 14 96775895 96775895 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018036.5 -1 validated p.V1400I 0.078 310 0% 103 26.2% 3 33.3% benign(0.001) tolerated(0.54) neutral(0.007) NULL PAPOLA 10914 genome.wustl.edu 37 14 97029171 97029171 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032632.3 +1 validated p.E695* 1.000 427 0% 188 23.4% 35 5.7% - - - NULL CYP46A1 10858 genome.wustl.edu 37 14 100158142 100158142 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006668.1 +1 reviewed p.R76W 0.997 457 0.2% 339 22.7% 0 - benign(0.334) deleterious(0.03) deleterious(0.469) HMMPfam_p450,superfamily_Cytochrome_P450 EML1 2009 genome.wustl.edu 37 14 100367271 100367271 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008707.1 +1 reviewed p.L320 0.997 618 0% 345 25.5% 3 66.6% - - - HMMSmart_WD40,superfamily_WD40_like EML1 2009 genome.wustl.edu 37 14 100405538 100405538 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008707.1 +1 reviewed p.V751 1.000 143 0% 147 19.7% 6 50% - - - NULL WARS 7453 genome.wustl.edu 37 14 100828209 100828209 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004184.3 -1 reviewed p.Y50C 1.000 335 0% 170 27.1% 576 42% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_WHEP-TRS,superfamily_S15/NS1 RNA-binding domain RTL1 388015 genome.wustl.edu 37 14 101348570 101348570 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134888.2 -1 reviewed p.A852 0.999 80 0% 68 23.5% 0 - - - - superfamily_DNA/RNA polymerases RTL1 388015 genome.wustl.edu 37 14 101349644 101349644 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134888.2 -1 reviewed p.I494 0.848 63 0% 84 19% 0 - - - - superfamily_Acid proteases DIO3 1735 genome.wustl.edu 37 14 102028025 102028025 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001362.3 +1 reviewed p.F38L 1.000 33 0% 41 22% 0 - possibly_damaging(0.529) tolerated(0.07) deleterious(0.497) HMMPfam_T4_deiodinase DIO3 1735 genome.wustl.edu 37 14 102028133 102028133 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001362.3 +1 reviewed p.I74 0.995 26 0% 16 25% 1 0% - - - HMMPfam_T4_deiodinase DIO3 1735 genome.wustl.edu 37 14 102028421 102028421 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001362.3 +1 reviewed p.I170 1.000 47 0% 47 17% 0 - - - - HMMPfam_T4_deiodinase DYNC1H1 1778 genome.wustl.edu 37 14 102452233 102452233 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001376.4 +1 reviewed p.I557 0.992 158 0% 88 17% 4 50% - - - HMMPfam_DHC_N1 DYNC1H1 1778 genome.wustl.edu 37 14 102460530 102460530 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001376.4 +1 reviewed p.H1009Y 1.000 835 0% 337 23.4% 3 0% benign(0.017) tolerated(0.12) neutral(0.261) NULL DYNC1H1 1778 genome.wustl.edu 37 14 102463378 102463378 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001376.4 +1 reviewed p.R1191C 1.000 145 0% 74 20.3% 4 50% benign(0.157) tolerated(0.07) neutral(0.333) NULL DYNC1H1 1778 genome.wustl.edu 37 14 102478270 102478270 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001376.4 +1 reviewed p.S2226L 1.000 289 0% 158 25.9% 15 40% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540 ZNF839 55778 genome.wustl.edu 37 14 102792820 102792820 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018335.3 +1 validated p.D263Y 1.000 92 0% 118 22.9% 7 71.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CINP 51550 genome.wustl.edu 37 14 102816276 102816276 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032630.2 -1 reviewed p.T139M 0.978 346 0% 327 21.4% 81 40.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TECPR2 9895 genome.wustl.edu 37 14 102891493 102891493 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014844.3 +1 validated p.P272 0.062 307 0% 260 23.5% 0 - - - - superfamily_WD40_like TNFAIP2 7127 genome.wustl.edu 37 14 103599762 103599762 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006291.2 +1 reviewed p.R537C 0.266 51 0% 63 25.4% 338 52% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Sec6 BAG5 9529 genome.wustl.edu 37 14 104026938 104026938 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015049.1 -1 reviewed p.F229 0.417 271 0.4% 327 22% 8 87.5% - - - HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain BAG5 9529 genome.wustl.edu 37 14 104027216 104027216 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015049.1 -1 reviewed p.N137D 0.990 259 0% 335 17% 7 0% benign(0.011) tolerated(0.54) neutral(0.008) NULL KLC1 3831 genome.wustl.edu 37 14 104142037 104142037 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130107.1 +1 reviewed p.K441N 1.000 185 0% 154 26% 63 39.6% probably_damaging(0.989) tolerated(0.07) deleterious(0.758) superfamily_TPR-like XRCC3 7517 genome.wustl.edu 37 14 104165908 104165908 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100118.1 -1 reviewed p.T189 0.986 43 0% 52 17.3% 26 34.6% - - - HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases PPP1R13B 23368 genome.wustl.edu 37 14 104263820 104263820 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015316.2 -1 reviewed p.Q15 1.000 377 0% 199 20.6% 3 33.3% - - - NULL TDRD9 122402 genome.wustl.edu 37 14 104481164 104481164 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153046.2 +1 validated p.R737* 1.000 430 0% 173 19.7% 0 - - - - NULL TDRD9 122402 genome.wustl.edu 37 14 104482406 104482406 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153046.2 +1 validated p.D771G 1.000 236 0% 111 23.4% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL TDRD9 122402 genome.wustl.edu 37 14 104493092 104493092 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153046.2 +1 validated p.A1033V 0.995 164 0% 100 20% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL KIF26A 26153 genome.wustl.edu 37 14 104640632 104640632 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015656.1 +1 validated p.R726 0.985 18 0% 13 38.5% 0 - - - - HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 INF2 64423 genome.wustl.edu 37 14 105174847 105174847 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022489.3 +1 validated p.R604* 1.000 46 0% 56 25% 46 6.5% - - - HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain) INF2 64423 genome.wustl.edu 37 14 105180839 105180839 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022489.3 +1 validated p.L1114I 0.133 41 0% 68 30.9% 66 15.1% unknown(0) deleterious(0) - NULL AKT1 207 genome.wustl.edu 37 14 105243048 105243048 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014431.1 -1 reviewed p.Q79K 1.000 41 0% 82 22% 106 41.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ZBTB42 100128927 genome.wustl.edu 37 14 105268545 105268545 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001137601.1 +1 validated p.P337 0.936 47 0% 45 20% 6 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers KIAA0284 283638 genome.wustl.edu 37 14 105334867 105334867 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001112726.1 +1 validated p.R27H 0.503 104 0% 114 10.5% 9 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA AHNAK2 113146 genome.wustl.edu 37 14 105408927 105408927 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138420.2 -1 validated p.A4287 0.000 341 0% 275 25.8% 8 87.5% - - - NULL AHNAK2 113146 genome.wustl.edu 37 14 105410890 105410890 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138420.2 -1 validated p.A3633V 0.001 315 0% 315 18.7% 2 0% possibly_damaging(0.806) tolerated(0.06) deleterious(0.626) NULL AHNAK2 113146 genome.wustl.edu 37 14 105420053 105420053 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138420.2 -1 validated p.Q579* 0.001 1112 0% 965 20.7% 2 50% - - - NULL AHNAK2 113146 genome.wustl.edu 37 14 105420682 105420682 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138420.2 -1 validated p.T369I 0.000 98 1% 81 27.2% 1 0% possibly_damaging(0.539) tolerated(0.1) deleterious(0.469) NULL GPR132 29933 genome.wustl.edu 37 14 105517353 105517353 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013345.2 -1 reviewed p.R374M 0.002 165 0% 153 14.4% 6 33.3% benign(0.422) deleterious(0) deleterious(0.582) NULL GPR132 29933 genome.wustl.edu 37 14 105518092 105518092 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013345.2 -1 reviewed p.V128I 0.977 95 0% 70 32.9% 5 0% benign(0.003) tolerated(1) - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like JAG2 3714 genome.wustl.edu 37 14 105612991 105612991 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002226.3 -1 reviewed p.R850 1.000 37 0% 22 27.3% 50 50% - - - PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin BTBD6 90135 genome.wustl.edu 37 14 105716946 105716946 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033271.2 +1 validated p.S390 0.019 154 0% 187 21.9% 107 39.2% - - - HMMPfam_PHR MTA1 9112 genome.wustl.edu 37 14 105929556 105929556 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004689.3 +1 reviewed p.Y326* 1.000 31 3.2% 49 14.3% 35 28.5% - - - HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding IGHG4 3503 genome.wustl.edu 37 14 106092331 106092331 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390543 -1 known p.L25M 0.156 114 0% 104 26% 2675 0.1% probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726 IGHA1 3493 genome.wustl.edu 37 14 106174212 106174212 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390547 -1 known p.A193T 0.424 105 0% 126 25.4% 75 0% benign(0.073) deleterious(0.02) neutral(0.388) superfamily_SSF48726 IGHA1 3493 genome.wustl.edu 37 14 106174423 106174423 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390547 -1 known p.C122* 0.000 244 0% 243 23.9% 76 0% - - - superfamily_SSF48726 IGHA1 3493 genome.wustl.edu 37 14 106174862 106174862 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390547 -1 known p.G47 0.000 131 0% 157 19.7% 76 0% - - - HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726 IGHG1 3500 genome.wustl.edu 37 14 106208483 106208483 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390548 -1 known p.T139 0.875 291 0% 285 10.9% 2034 0.6% - - - HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin IGHV4-39 28394 genome.wustl.edu 37 14 106877761 106877761 + Missense_Mutation SNP C C A rs115523671 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390619 -1 known p.S78I 0.000 238 0% 227 11.5% 658 0% benign(0.067) tolerated(0.39) neutral(0.021) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin IGHV3-43 28426 genome.wustl.edu 37 14 106926231 106926231 + Missense_Mutation SNP C C A rs182842897 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000434710 -1 known p.S104I 0.733 441 0% 440 22% 160 0% benign(0.362) deleterious(0.01) deleterious(0.521) HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726 IGHV1-45 28466 genome.wustl.edu 37 14 106962958 106962958 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390621 -1 known p.E108D 0.993 383 0% 181 18.2% 0 - benign(0.006) tolerated(0.11) neutral(0.272) HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726 ENSG00000231400 0 genome.wustl.edu 37 15 20363051 20363051 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000442923 +1 known p.E77K 1.000 213 0% 270 11.1% 4 0% - - - HMMPfam_DUF663 GOLGA6L6 727832 genome.wustl.edu 37 15 20739809 20739809 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145004.1 -1 inferred p.E647D 0.998 269 0% 121 12.4% 0 - unknown(0) tolerated(0.16) - NULL OR4N4 283694 genome.wustl.edu 37 15 22382596 22382596 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005241.1 +1 provisional p.N42H 1.000 1165 0% 952 12% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 TUBGCP5 114791 genome.wustl.edu 37 15 22842144 22842144 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102610.1 +1 validated p.D195N 0.980 325 0% 179 20.1% 2 0% possibly_damaging(0.68) deleterious(0.01) deleterious(0.648) NULL TUBGCP5 114791 genome.wustl.edu 37 15 22850952 22850952 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102610.1 +1 validated p.R405Q 1.000 342 0% 163 23.9% 9 22.2% benign(0.061) tolerated(0.44) neutral(0.017) HMMPfam_Spc97_Spc98 CYFIP1 23191 genome.wustl.edu 37 15 22956140 22956140 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033028.1 +1 validated p.T28 1.000 343 0% 272 22.8% 0 - - - - HMMPfam_FragX_IP NIPA2 81614 genome.wustl.edu 37 15 23012324 23012324 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008860.2 -1 reviewed p.E135* 1.000 326 0% 173 24.3% 49 46.9% - - - HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE GOLGA8IP 283796 genome.wustl.edu 37 15 23261815 23261815 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450802 +1 known p.Q309H 0.092 36 0% 42 19% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL GOLGA8E 390535 genome.wustl.edu 37 15 23445372 23445372 + Silent SNP C C T rs75976576 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450934 +1 known p.I405 0.190 195 0% 272 6.2% 0 - - - - NULL LOC283685 283685 genome.wustl.edu 37 15 23686466 23686466 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343322.1 -1 model p.R348W 0.002 54 0% 30 20% 0 - unknown(0) deleterious(0) - NULL LOC283685 283685 genome.wustl.edu 37 15 23686542 23686542 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343322.1 -1 model p.Q322H 0.030 54 0% 42 28.6% 0 - unknown(0) deleterious(0.04) - NULL MAGEL2 54551 genome.wustl.edu 37 15 23890412 23890412 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019066.4 -1 reviewed p.A223 0.510 117 0% 146 26.7% 0 - - - - NULL C15orf2 23742 genome.wustl.edu 37 15 24921184 24921184 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018958.2 +1 reviewed p.R57H 0.000 6 0.000 12 0.417 0 - possibly_damaging(0.865) deleterious(0.02) deleterious(0.718) NULL C15orf2 23742 genome.wustl.edu 37 15 24922124 24922124 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018958.2 +1 reviewed p.E370 0.000 135 0% 159 15.1% 0 - - - - NULL C15orf2 23742 genome.wustl.edu 37 15 24923167 24923167 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018958.2 +1 reviewed p.K718T 0.000 265 0% 315 12.1% 0 - probably_damaging(0.976) - - NULL C15orf2 23742 genome.wustl.edu 37 15 24923486 24923486 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018958.2 +1 reviewed p.D824 0.000 260 0% 320 11.9% 0 - - - - NULL C15orf2 23742 genome.wustl.edu 37 15 24924025 24924025 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018958.2 +1 reviewed p.G1004D 0.014 129 0% 149 15.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SNRPN 6638 genome.wustl.edu 37 15 25220615 25220615 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003097.3 +1 reviewed p.M38I 1.000 530 0% 339 16.2% 158 75.9% possibly_damaging(0.749) deleterious(0) deleterious(0.720) HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins SNRPN 6638 genome.wustl.edu 37 15 25223033 25223033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003097.3 +1 reviewed p.P177S 0.252 66 0% 51 13.7% 356 0% unknown(0) deleterious(0.03) - NULL SNRPN 6638 genome.wustl.edu 37 15 25223412 25223412 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003097.3 +1 reviewed p.T211M 0.861 183 0% 132 25% 273 0% unknown(0) tolerated(0.22) - NULL LOC100289059 100289059 genome.wustl.edu 37 15 25414822 25414822 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343317.1 -1 model p.T104M 0.001 26 0% 14 28.6% 0 - - - - NULL UBE3A 7337 genome.wustl.edu 37 15 25616712 25616712 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000462.2 -1 reviewed p.D206 0.210 492 0% 262 29.8% 13 53.8% - - - NULL UBE3A 7337 genome.wustl.edu 37 15 25650639 25650639 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000462.2 -1 reviewed p.P14S 1.000 395 0% 109 17.4% 7 71.4% benign(0) tolerated(1) - NULL ATP10A 57194 genome.wustl.edu 37 15 25928584 25928584 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024490.3 -1 reviewed p.A1114V 0.997 226 0% 103 22.3% 16 6.2% benign(0.268) deleterious(0) deleterious(0.473) NULL ATP10A 57194 genome.wustl.edu 37 15 25947157 25947157 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024490.3 -1 reviewed p.T889I 1.000 260 0% 192 21.4% 11 18.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF56784 ATP10A 57194 genome.wustl.edu 37 15 25972389 25972389 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024490.3 -1 reviewed p.A255 0.187 365 0% 380 19.7% 2 50% - - - HMMPfam_E1-E2_ATPase,superfamily_SSF81653 ATP10A 57194 genome.wustl.edu 37 15 25981263 25981263 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024490.3 -1 reviewed p.F227C 1.000 148 0% 155 23.2% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_E1-E2_ATPase,superfamily_SSF81653 GABRB3 2562 genome.wustl.edu 37 15 26806278 26806278 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000814.4 -1 reviewed p.R294Q 1.000 521 0% 274 20.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore HERC2 8924 genome.wustl.edu 37 15 28380624 28380624 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.S4077I 1.000 255 0% 210 16.2% 6 0% possibly_damaging(0.818) tolerated(0.47) neutral(0.320) HMMPfam_RCC1,superfamily_RCC1/BLIP-II HERC2 8924 genome.wustl.edu 37 15 28422639 28422639 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.T3060 0.953 145 0.7% 142 21.8% 3 33.3% - - - HMMPfam_RCC1,superfamily_RCC1/BLIP-II HERC2 8924 genome.wustl.edu 37 15 28436380 28436380 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.R2821H 1.000 192 0% 158 29.1% 1 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Galactose-binding domain-like HERC2 8924 genome.wustl.edu 37 15 28447531 28447531 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.S2481Y 0.999 104 0% 79 21.5% 3 66.6% probably_damaging(0.982) deleterious(0) deleterious(0.871) NULL HERC2 8924 genome.wustl.edu 37 15 28458979 28458979 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.T2232N 1.000 253 0% 268 21.3% 2 100% possibly_damaging(0.896) deleterious(0.01) deleterious(0.759) NULL HERC2 8924 genome.wustl.edu 37 15 28483763 28483763 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.G1245* 0.997 311 0% 192 15.6% 0 - - - - HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain HERC2 8924 genome.wustl.edu 37 15 28517370 28517370 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004667.4 -1 reviewed p.G358 0.002 112 0% 110 12.7% 2 0% - - - NULL ENSG00000206149 0 genome.wustl.edu 37 15 28878787 28878787 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000382946 +1 known p.L29 1.000 437 0% 290 17.2% 0 - - - - NULL ENSG00000206149 0 genome.wustl.edu 37 15 28886618 28886618 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000382946 +1 known p.P449 0.989 208 0% 125 17.6% 0 - - - - NULL ENSG00000206149 0 genome.wustl.edu 37 15 28900800 28900800 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000383034 +1 known p.S52Y 0.976 157 0% 118 27.1% 1 0% - - - NULL TJP1 7082 genome.wustl.edu 37 15 30001141 30001141 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003257.3 -1 validated p.E1491V 0.999 399 0% 144 18.8% 27 7.4% possibly_damaging(0.747) deleterious(0) deleterious(0.719) NULL TJP1 7082 genome.wustl.edu 37 15 30009037 30009037 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003257.3 -1 validated p.P1327L 1.000 522 0.2% 239 22.2% 13 53.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TJP1 7082 genome.wustl.edu 37 15 30010303 30010303 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003257.3 -1 validated p.K1299T 1.000 285 0% 174 24.7% 19 78.9% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL TJP1 7082 genome.wustl.edu 37 15 30010868 30010868 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003257.3 -1 validated p.Q1160* 0.939 182 0% 113 18.6% 16 18.7% - - - NULL TJP1 7082 genome.wustl.edu 37 15 30010912 30010912 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003257.3 -1 validated p.R1145H 1.000 263 0.4% 141 27% 15 86.6% benign(0.288) deleterious(0) deleterious(0.533) NULL ENSG00000215315 0 genome.wustl.edu 37 15 30337092 30337092 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000400005 +1 known p.A89V 0.945 122 0% 203 21.7% 1 0% - - - HMMPfam_MARVEL ENSG00000103832 0 genome.wustl.edu 37 15 31090557 31090557 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000220188 +1 known p.R124M 0.991 68 0% 57 22.8% 2 0% - - - NULL MTMR10 54893 genome.wustl.edu 37 15 31251128 31251128 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017762.2 -1 validated p.G291 1.000 258 0% 111 21.6% 7 42.8% - - - HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II MTMR10 54893 genome.wustl.edu 37 15 31260129 31260129 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017762.2 -1 validated p.N187H 1.000 239 0% 105 19% 3 100% benign(0.198) tolerated(0.08) neutral(0.319) NULL TRPM1 4308 genome.wustl.edu 37 15 31355350 31355350 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002420.4 -1 reviewed p.S290 0.460 93 0% 50 20% 0 - - - - NULL OTUD7A 161725 genome.wustl.edu 37 15 31818566 31818566 + Silent SNP G G A rs184361722 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130901.1 -1 provisional p.G286 0.947 51 0% 47 21.3% 0 - - - - HMMPfam_OTU FMN1 342184 genome.wustl.edu 37 15 33357277 33357277 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103184.2 -1 validated e2-2 1.000 357 0% 268 12.7% 0 - - - - - RYR3 6263 genome.wustl.edu 37 15 33952506 33952506 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001036.3 +1 validated p.R1502C 1.000 103 0% 80 22.5% 0 - probably_damaging(1) - - NULL RYR3 6263 genome.wustl.edu 37 15 33955109 33955109 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001036.3 +1 validated p.G1793D 1.000 394 0% 243 21.8% 0 - probably_damaging(1) - - NULL RYR3 6263 genome.wustl.edu 37 15 34018659 34018659 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001036.3 +1 validated p.L2329M 1.000 127 0% 56 10.7% 0 - probably_damaging(0.998) - - NULL RYR3 6263 genome.wustl.edu 37 15 34130530 34130530 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001036.3 +1 validated p.D4117Y 0.395 264 0% 105 22.9% 0 - benign(0.408) - - NULL RYR3 6263 genome.wustl.edu 37 15 34134153 34134153 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001036.3 +1 validated p.R4376W 0.018 401 0% 150 25.3% 0 - probably_damaging(0.999) - - HMMPfam_RR_TM4-6 CHRM5 1133 genome.wustl.edu 37 15 34355108 34355108 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012125.3 +1 validated p.V64F 1.000 346 0.3% 189 22.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 CHRM5 1133 genome.wustl.edu 37 15 34355519 34355519 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012125.3 +1 validated p.A201T 1.000 245 0% 134 17.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 PGBD4 161779 genome.wustl.edu 37 15 34396387 34396387 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152595.4 +1 validated p.G552D 0.009 337 0% 299 25.4% 1 0% probably_damaging(1) tolerated(0.25) deleterious(0.537) NULL C15orf29 79768 genome.wustl.edu 37 15 34445115 34445115 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024713.2 -1 validated p.A105D 1.000 218 0% 101 15.8% 15 40% probably_damaging(0.999) tolerated(0.39) deleterious(0.506) NULL C15orf55 256646 genome.wustl.edu 37 15 34640466 34640466 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175741.1 +1 validated p.Q105* 0.999 99 0% 65 24.6% 0 - - - - NULL C15orf55 256646 genome.wustl.edu 37 15 34643007 34643007 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175741.1 +1 validated p.R276 1.000 168 0% 115 20% 0 - - - - NULL C15orf55 256646 genome.wustl.edu 37 15 34646777 34646777 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175741.1 +1 validated p.I374 1.000 606 0% 289 18.7% 0 - - - - NULL C15orf55 256646 genome.wustl.edu 37 15 34648039 34648039 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175741.1 +1 validated p.E582D 0.081 29 0% 18 27.8% 0 - possibly_damaging(0.481) deleterious(0) deleterious(0.604) NULL ACTC1 70 genome.wustl.edu 37 15 35084465 35084465 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005159.4 -1 reviewed p.R212C 1.000 218 0% 242 19.8% 0 - possibly_damaging(0.905) - - HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain ACTC1 70 genome.wustl.edu 37 15 35085715 35085715 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005159.4 -1 reviewed p.S62N 1.000 135 0% 240 13.3% 0 - benign(0.081) - - HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,superfamily_Actin-like ATPase domain AQR 9716 genome.wustl.edu 37 15 35174737 35174737 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014691.2 -1 validated p.L1044S 1.000 248 0% 129 22.5% 22 40.9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52540 AQR 9716 genome.wustl.edu 37 15 35198760 35198760 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014691.2 -1 validated p.R606H 1.000 409 0% 259 21.6% 13 38.4% benign(0.408) tolerated(0.14) neutral(0.382) NULL ENSG00000248276 0 genome.wustl.edu 37 15 35376836 35376836 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000514460 +1 known NULL 0.910 115 0% 157 12.1% 0 - - - - - ENSG00000248276 0 genome.wustl.edu 37 15 35377144 35377144 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000514460 +1 known NULL 0.005 347 0.3% 364 24.7% 1 0% - - - - C15orf41 84529 genome.wustl.edu 37 15 36950033 36950033 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130010.1 +1 validated e5-1 1.000 363 0% 190 24.7% 0 - - - - - MEIS2 4212 genome.wustl.edu 37 15 37390246 37390246 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170675.2 -1 reviewed p.P56L 1.000 46 0% 50 26% 0 - benign(0.058) tolerated(0.08) neutral(0.303) NULL TMCO5A 145942 genome.wustl.edu 37 15 38243390 38243390 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152453.2 +1 provisional p.F274L 0.985 303 0% 82 9.8% 0 - benign(0) tolerated(1) - NULL SPRED1 161742 genome.wustl.edu 37 15 38591612 38591612 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152594.2 +1 reviewed p.R24Q 1.000 230 0% 73 27.4% 9 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like FAM98B 283742 genome.wustl.edu 37 15 38757556 38757556 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173611.2 +1 validated p.D102Y 1.000 204 0% 169 17.2% 19 36.8% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) HMMPfam_DUF2465 FAM98B 283742 genome.wustl.edu 37 15 38765746 38765746 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173611.2 +1 validated p.G191E 1.000 167 0% 175 30.3% 18 33.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_DUF2465 FAM98B 283742 genome.wustl.edu 37 15 38776538 38776538 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173611.2 +1 validated p.K327T 1.000 53 0% 87 24.1% 13 38.4% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_DUF2465 EIF2AK4 440275 genome.wustl.edu 37 15 40313113 40313113 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013703.2 +1 validated p.S1396Y 1.000 321 0% 180 23.9% 26 50% benign(0.009) tolerated(0.35) neutral(0.021) NULL SRP14 6727 genome.wustl.edu 37 15 40328590 40328590 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003134.4 -1 validated p.A119T 0.060 203 0.5% 201 32.8% 561 34.9% unknown(0) - - NULL BUB1B 701 genome.wustl.edu 37 15 40468831 40468831 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001211.5 +1 reviewed p.Q180K 0.983 377 0% 131 14.5% 13 0% benign(0.021) tolerated(0.33) neutral(0.025) NULL PLCB2 5330 genome.wustl.edu 37 15 40594679 40594679 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004573.2 -1 validated p.N121 0.252 102 0% 79 20.3% 9 0% - - - NULL PLCB2 5330 genome.wustl.edu 37 15 40594694 40594694 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004573.2 -1 validated p.V116 1.000 108 0% 84 14.3% 7 28.5% - - - NULL PLCB2 5330 genome.wustl.edu 37 15 40595532 40595532 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004573.2 -1 validated p.S63N 0.997 197 0% 232 20.3% 1 100% possibly_damaging(0.666) tolerated(0.31) neutral(0.263) NULL DISP2 85455 genome.wustl.edu 37 15 40659532 40659532 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033510.1 +1 reviewed p.A407T 0.975 103 0% 133 16.5% 0 - possibly_damaging(0.769) tolerated(0.09) deleterious(0.582) NULL DISP2 85455 genome.wustl.edu 37 15 40659550 40659550 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033510.1 +1 reviewed p.H413Y 1.000 101 0% 121 19% 0 - possibly_damaging(0.862) tolerated(0.12) deleterious(0.594) NULL DISP2 85455 genome.wustl.edu 37 15 40661976 40661976 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033510.1 +1 reviewed p.H1221 1.000 23 0% 33 21.2% 0 - - - - NULL BAHD1 22893 genome.wustl.edu 37 15 40751076 40751076 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014952.3 +1 validated p.S138I 0.039 7 0.000 16 0.375 12 50% benign(0.032) deleterious(0) neutral(0.446) NULL BAHD1 22893 genome.wustl.edu 37 15 40751222 40751222 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014952.3 +1 validated p.P187S 0.999 21 0% 32 21.9% 5 60% benign(0.004) tolerated(0.07) neutral(0.319) NULL BAHD1 22893 genome.wustl.edu 37 15 40757605 40757605 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014952.3 +1 validated p.C708* 1.000 318 0% 444 11.5% 18 0% - - - HMMPfam_BAH,HMMSmart_SM00439 RPUSD2 27079 genome.wustl.edu 37 15 40863954 40863954 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152260.1 +1 provisional p.T253I 1.000 150 0% 115 26.1% 20 35% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom CASC5 57082 genome.wustl.edu 37 15 40954289 40954289 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170589.3 +1 validated p.T2311I 0.716 347 0% 213 31% 16 50% probably_damaging(0.976) tolerated(0.07) deleterious(0.737) NULL VPS18 57617 genome.wustl.edu 37 15 41194847 41194847 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020857.2 +1 reviewed p.L744M 0.997 159 0% 121 18.2% 49 44.8% possibly_damaging(0.61) tolerated(0.34) neutral(0.234) NULL DLL4 54567 genome.wustl.edu 37 15 41228578 41228578 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019074.2 +1 reviewed p.T465A 1.000 33 0% 56 12.5% 8 12.5% benign(0.002) tolerated(0.29) neutral(0.029) HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196 INO80 54617 genome.wustl.edu 37 15 41276057 41276057 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017553.1 -1 reviewed p.M1380I 1.000 152 0% 86 20.9% 16 43.7% benign(0.003) tolerated(0.17) neutral(0.059) NULL INO80 54617 genome.wustl.edu 37 15 41313146 41313146 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017553.1 -1 reviewed p.L1076M 0.989 114 0% 38 23.7% 13 46.1% benign(0.01) tolerated(0.08) neutral(0.300) NULL INO80 54617 genome.wustl.edu 37 15 41365658 41365658 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017553.1 -1 reviewed p.A455T 1.000 614 0.2% 228 23.7% 2 50% benign(0.248) deleterious(0.01) neutral(0.431) superfamily_P-loop containing nucleoside triphosphate hydrolases INO80 54617 genome.wustl.edu 37 15 41366575 41366575 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017553.1 -1 reviewed p.E440D 0.993 292 0% 146 26% 0 - probably_damaging(0.971) tolerated(1) neutral(0.413) superfamily_P-loop containing nucleoside triphosphate hydrolases NUSAP1 51203 genome.wustl.edu 37 15 41657756 41657756 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016359.3 +1 validated p.S273T 0.028 78 0% 61 21.3% 62 43.5% probably_damaging(0.955) tolerated(0.27) neutral(0.432) NULL RTF1 23168 genome.wustl.edu 37 15 41769481 41769481 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015138.4 +1 validated p.I560T 1.000 106 0% 82 29.3% 38 42.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ITPKA 3706 genome.wustl.edu 37 15 41794639 41794639 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002220.1 +1 reviewed p.R350* 0.054 101 0% 98 30.6% 1 100% - - - HMMPfam_IPK,superfamily_SSF56104 RPAP1 26015 genome.wustl.edu 37 15 41810253 41810253 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015540.2 -1 reviewed p.A1308D 1.000 219 0.5% 140 28.6% 44 27.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL TYRO3 7301 genome.wustl.edu 37 15 41859736 41859736 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006293.3 +1 reviewed e7+1 1.000 78 0% 64 15.6% 0 - - - - - MGA 23269 genome.wustl.edu 37 15 41961237 41961237 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080541.2 +1 validated p.A49T 1.000 377 0% 253 26.5% 2 0% probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL MGA 23269 genome.wustl.edu 37 15 41988287 41988287 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080541.2 +1 validated p.S360I 0.905 330 0% 172 20.9% 1 0% possibly_damaging(0.882) deleterious(0) deleterious(0.789) NULL MGA 23269 genome.wustl.edu 37 15 42028877 42028877 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080541.2 +1 validated p.S1472I 1.000 73 0% 32 15.6% 3 66.6% possibly_damaging(0.775) deleterious(0) deleterious(0.733) NULL MAPKBP1 23005 genome.wustl.edu 37 15 42107555 42107555 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128608.1 +1 validated p.E429 1.000 209 0% 132 25.8% 1 0% - - - superfamily_WD40 repeat-like MAPKBP1 23005 genome.wustl.edu 37 15 42115683 42115683 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128608.1 +1 validated p.A1219T 0.084 52 0% 66 16.7% 7 28.5% benign(0.002) tolerated(0.65) neutral(0.003) NULL MAPKBP1 23005 genome.wustl.edu 37 15 42115987 42115987 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128608.1 +1 validated p.R1320Q 0.892 141 0.7% 145 29% 7 42.8% benign(0.076) tolerated(0.38) neutral(0.023) NULL JMJD7-PLA2G4B 8681 genome.wustl.edu 37 15 42127352 42127352 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005090.3 +1 validated p.L135M 1.000 46 0% 54 16.7% 18 16.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00558,superfamily_Clavaminate synthase-like JMJD7-PLA2G4B 8681 genome.wustl.edu 37 15 42134079 42134079 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005090.3 +1 validated p.V416M 0.002 49 0% 73 30.1% 2 50% possibly_damaging(0.791) tolerated(0.26) neutral(0.331) NULL JMJD7-PLA2G4B 8681 genome.wustl.edu 37 15 42136739 42136739 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005090.3 +1 validated p.A548V 0.971 216 0% 265 23% 8 75% possibly_damaging(0.88) tolerated(0.45) neutral(0.355) HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like SPTBN5 51332 genome.wustl.edu 37 15 42147624 42147624 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016642.2 -1 validated p.P3039H 0.178 42 0% 41 22% 1 0% possibly_damaging(0.676) deleterious(0.04) deleterious(0.589) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN5 51332 genome.wustl.edu 37 15 42162747 42162747 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016642.2 -1 validated p.S1785L 0.043 74 1.4% 66 37.9% 3 33.3% benign(0.006) tolerated(0.1) neutral(0.286) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN5 51332 genome.wustl.edu 37 15 42166597 42166597 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016642.2 -1 validated p.L1493M 0.028 110 0% 170 30.6% 0 - probably_damaging(0.992) tolerated(0.08) deleterious(0.748) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN5 51332 genome.wustl.edu 37 15 42169080 42169080 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016642.2 -1 validated p.L1225M 0.116 33 0% 50 12% 0 - probably_damaging(1) tolerated(0.22) deleterious(0.542) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat EHD4 30844 genome.wustl.edu 37 15 42235264 42235264 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139265.3 -1 validated e3+1 1.000 126 0% 94 10.6% 0 - - - - - PLA2G4E 123745 genome.wustl.edu 37 15 42281668 42281668 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080490.1 -1 provisional p.F527 1.000 95 0% 103 32% 0 - - - - HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like PLA2G4E 123745 genome.wustl.edu 37 15 42293401 42293401 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080490.1 -1 provisional p.C180 1.000 211 0% 94 23.4% 0 - - - - NULL PLA2G4D 283748 genome.wustl.edu 37 15 42363396 42363396 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178034.3 -1 validated p.R601C 0.090 45 0% 42 14.3% 0 - possibly_damaging(0.932) deleterious(0.01) deleterious(0.784) HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like VPS39 23339 genome.wustl.edu 37 15 42453910 42453910 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015289.2 -1 reviewed p.C841Y 1.000 424 0% 199 19.1% 40 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Vps39_2 VPS39 23339 genome.wustl.edu 37 15 42470722 42470722 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015289.2 -1 reviewed p.E255D 1.000 329 0% 88 23.9% 12 33.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_CNH GANC 2595 genome.wustl.edu 37 15 42621518 42621518 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198141.2 +1 reviewed p.I505 1.000 122 0% 37 18.9% 1 0% - - - HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases CAPN3 825 genome.wustl.edu 37 15 42678382 42678382 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000070.2 +1 reviewed p.A133T 1.000 123 0% 61 23% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases CAPN3 825 genome.wustl.edu 37 15 42695124 42695124 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000070.2 +1 reviewed p.V557M 1.000 84 1.2% 48 22.9% 7 28.5% possibly_damaging(0.768) deleterious(0) deleterious(0.730) HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand CAPN3 825 genome.wustl.edu 37 15 42702174 42702174 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000070.2 +1 reviewed p.S699I 1.000 153 0% 110 20% 2 0% probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand CAPN3 825 genome.wustl.edu 37 15 42703158 42703158 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000070.2 +1 reviewed p.D780 1.000 566 0% 296 20.6% 8 12.5% - - - superfamily_EF-hand ZFP106 64397 genome.wustl.edu 37 15 42736410 42736410 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022473.1 -1 provisional p.Q1114H 1.000 241 0% 170 17.6% 5 40% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ZFP106 64397 genome.wustl.edu 37 15 42742479 42742479 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022473.1 -1 provisional p.S641Y 0.003 376 0% 101 22.8% 3 0% possibly_damaging(0.708) deleterious(0.01) deleterious(0.661) NULL STARD9 57519 genome.wustl.edu 37 15 42875564 42875564 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001129482.3 +1 model p.R23I 1.000 671 0.1% 822 22.4% 0 - probably_damaging(0.995) - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases STARD9 57519 genome.wustl.edu 37 15 42943213 42943213 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001129482.3 +1 model e8-1 1.000 407 0% 95 13.7% 0 - - - - - STARD9 57519 genome.wustl.edu 37 15 42967090 42967090 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001129482.3 +1 model p.L491I 0.992 86 0% 28 14.3% 0 - probably_damaging(0.998) - - superfamily_SMAD/FHA domain STARD9 57519 genome.wustl.edu 37 15 42980316 42980316 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001129482.3 +1 model p.I2094 0.000 179 0% 59 22% 0 - - - - NULL STARD9 57519 genome.wustl.edu 37 15 42985285 42985285 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001129482.3 +1 model p.V3751I 0.001 167 0% 59 16.9% 1 0% benign(0.176) - - NULL TTBK2 146057 genome.wustl.edu 37 15 43093384 43093384 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000263802 -1 known p.S600I 0.999 36 0% 25 36% 1 100% unknown(0) deleterious(0.01) - NULL EPB42 2038 genome.wustl.edu 37 15 43507414 43507414 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000119.2 -1 reviewed p.T133 0.995 116 0% 123 26% 0 - - - - HMMPfam_Transglut_N,superfamily_Ig_E-set EPB42 2038 genome.wustl.edu 37 15 43508573 43508573 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000119.2 -1 reviewed p.R60H 0.320 305 0.3% 261 19.9% 0 - benign(0.027) tolerated(0.3) neutral(0.030) HMMPfam_Transglut_N,superfamily_Ig_E-set TGM5 9333 genome.wustl.edu 37 15 43552323 43552323 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201631.3 -1 reviewed p.I121 0.023 50 0% 44 22.7% 0 - - - - HMMPfam_Transglut_N,superfamily_E set domains LCMT2 9836 genome.wustl.edu 37 15 43621832 43621832 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014793.3 -1 reviewed p.R286W 0.387 53 0% 109 22.9% 8 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LCM,superfamily_SSF53335 ADAL 161823 genome.wustl.edu 37 15 43632483 43632483 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012969.2 +1 validated p.K92N 1.000 362 0% 192 21.9% 7 57.1% possibly_damaging(0.804) tolerated(0.06) deleterious(0.625) HMMPfam_A_deaminase,superfamily_SSF51556 ADAL 161823 genome.wustl.edu 37 15 43644044 43644044 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422466 +1 known p.L323 1.000 290 0% 128 19.5% 6 33.3% - - - HMMPfam_A_deaminase,superfamily_Metallo-dependent hydrolases TUBGCP4 27229 genome.wustl.edu 37 15 43669266 43669266 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014444.2 +1 provisional e4+1 1.000 578 0% 506 21.5% 0 - - - - - TP53BP1 7158 genome.wustl.edu 37 15 43707945 43707945 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001141980.1 -1 validated p.A1646T 0.285 256 0.4% 136 23.5% 35 42.8% benign(0.001) tolerated(0.35) neutral(0.021) NULL TP53BP1 7158 genome.wustl.edu 37 15 43784645 43784645 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001141980.1 -1 validated p.G10E 1.000 144 0% 164 30.5% 4 50% probably_damaging(1) tolerated(0.26) deleterious(0.534) NULL MAP1A 4130 genome.wustl.edu 37 15 43814173 43814173 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002373.5 +1 reviewed p.R168C 1.000 105 0% 105 21.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MAP1A 4130 genome.wustl.edu 37 15 43815190 43815190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002373.5 +1 reviewed p.A507T 0.995 95 0% 53 22.6% 1 100% benign(0.001) tolerated(0.11) neutral(0.272) NULL PPIP5K1 9677 genome.wustl.edu 37 15 43873513 43873513 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130858.1 -1 validated p.R284Q 1.000 307 0% 182 13.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Glutathione synthetase ATP-binding domain-like STRC 161497 genome.wustl.edu 37 15 43892237 43892237 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153700.2 -1 reviewed p.Q1720H 1.000 403 0% 274 21.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL STRC 161497 genome.wustl.edu 37 15 43910166 43910166 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153700.2 -1 reviewed p.G151 0.990 140 0% 98 15.3% 0 - - - - NULL CATSPER2 117155 genome.wustl.edu 37 15 43932535 43932535 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172095.1 -1 reviewed p.V183G 0.894 455 0% 287 16.7% 1 0% possibly_damaging(0.81) deleterious(0) deleterious(0.750) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CATSPER2 117155 genome.wustl.edu 37 15 43932635 43932635 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172095.1 -1 reviewed p.A150S 0.996 313 0% 233 26.2% 2 0% possibly_damaging(0.527) deleterious(0.03) deleterious(0.542) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels STRC 161497 genome.wustl.edu 37 15 43991978 43991978 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381686 -1 known p.Q1742 0.975 351 0% 243 11.1% 0 - - - - NULL STRC 161497 genome.wustl.edu 37 15 43993422 43993422 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381686 -1 known p.S1561I 0.468 194 0% 146 21.9% 0 - - - - NULL STRC 161497 genome.wustl.edu 37 15 43995688 43995688 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381686 -1 known p.A1451D 0.033 125 0% 78 26.9% 0 - - - - NULL PDIA3 2923 genome.wustl.edu 37 15 44048912 44048912 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005313.4 +1 reviewed p.K104 1.000 597 0% 460 22.8% 625 40.6% - - - superfamily_Thioredoxin-like,HMMPfam_Thioredoxin MFAP1 4236 genome.wustl.edu 37 15 44097306 44097306 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005926.2 -1 validated p.R436W 1.000 159 0% 104 24% 70 47.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MFAP1_C SPG11 80208 genome.wustl.edu 37 15 44858195 44858195 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025137.3 -1 reviewed p.R2286* 1.000 91 0% 20 35% 39 5.1% - - - NULL SPG11 80208 genome.wustl.edu 37 15 44861597 44861597 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025137.3 -1 reviewed p.P2195L 1.000 424 0.2% 148 21.6% 19 73.6% probably_damaging(0.997) tolerated(0.28) deleterious(0.498) NULL TRIM69 140691 genome.wustl.edu 37 15 45059620 45059620 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182985.3 +1 reviewed p.A385S 0.921 252 0% 107 15.9% 3 0% benign(0.005) tolerated(0.31) neutral(0.027) HMMPfam_SPRY,HMMSmart_SM00449 SORD 6652 genome.wustl.edu 37 15 45361177 45361177 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003104.4 +1 validated p.G238D 0.003 126 0% 90 20% 29 34.4% benign(0) tolerated(0.54) neutral(0.007) HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains DUOX2 50506 genome.wustl.edu 37 15 45386357 45386357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014080.4 -1 reviewed p.E1546D 1.000 277 0% 152 13.8% 0 - probably_damaging(0.987) deleterious(0.01) deleterious(0.842) superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain DUOX2 50506 genome.wustl.edu 37 15 45388081 45388081 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014080.4 -1 reviewed p.R1342H 0.999 140 0% 114 24.6% 0 - possibly_damaging(0.73) tolerated(0.11) deleterious(0.538) HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like DUOXA2 405753 genome.wustl.edu 37 15 45409502 45409502 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207581.3 +1 reviewed p.T256 0.164 30 0% 45 20% 0 - - - - HMMPfam_DuoxA DUOX1 53905 genome.wustl.edu 37 15 45428027 45428027 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017434.3 +1 reviewed p.G249C 1.000 83 0% 80 17.5% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases LOC100289438 100289438 genome.wustl.edu 37 15 45439759 45439759 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343344.1 -1 model p.V280I 0.998 217 0% 142 23.9% 1 100% - - - NULL DUOX1 53905 genome.wustl.edu 37 15 45439829 45439829 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017434.3 +1 reviewed p.L841 1.000 235 0% 156 21.8% 0 - - - - HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand LOC100289438 100289438 genome.wustl.edu 37 15 45439901 45439901 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343344.1 -1 model e6-1 0.004 106 0% 66 21.2% 0 - - - - - GATM 2628 genome.wustl.edu 37 15 45668829 45668829 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001482.2 -1 reviewed p.A86 1.000 171 0% 215 14% 0 - - - - HMMPfam_Amidinotransf,PatternScan_TONB_DEPENDENT_REC_1,superfamily_Pentein SLC30A4 7782 genome.wustl.edu 37 15 45781230 45781230 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013309.4 -1 validated p.L235 1.000 196 0% 65 18.5% 0 - - - - HMMPfam_Cation_efflux PLDN 26258 genome.wustl.edu 37 15 45884413 45884413 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012388.2 +1 reviewed p.G55* 1.000 327 0% 258 24% 3 0% - - - NULL SEMA6D 80031 genome.wustl.edu 37 15 48056048 48056048 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153618.1 +1 reviewed p.A250D 1.000 198 0% 74 16.2% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain MYEF2 50804 genome.wustl.edu 37 15 48458136 48458136 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016132.3 -1 validated p.I173 0.986 125 0% 115 14.8% 11 27.2% - - - HMMSmart_SM00360,superfamily_RNA-binding domain RBD SLC12A1 6557 genome.wustl.edu 37 15 48537080 48537080 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000338.2 +1 reviewed p.Y477 0.729 197 0% 96 26% 0 - - - - HMMPfam_AA_permease SLC12A1 6557 genome.wustl.edu 37 15 48591409 48591409 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000338.2 +1 reviewed p.E1011 1.000 208 0% 210 18.1% 1 0% - - - NULL FBN1 2200 genome.wustl.edu 37 15 48777681 48777681 + Missense_Mutation SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000138.4 -1 reviewed p.C1201S 1.000 183 0% 71 19.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin CEP152 22995 genome.wustl.edu 37 15 49031004 49031004 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014985.2 -1 provisional p.R1469 0.000 219 0% 84 11.9% 6 33.3% - - - NULL CEP152 22995 genome.wustl.edu 37 15 49074383 49074383 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014985.2 -1 provisional p.A456T 1.000 223 0% 63 36.5% 1 100% benign(0.381) tolerated(0.28) neutral(0.153) NULL SECISBP2L 9728 genome.wustl.edu 37 15 49284582 49284582 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014701.2 -1 provisional p.A1010 0.000 292 0% 123 23.6% 10 50% - - - NULL SECISBP2L 9728 genome.wustl.edu 37 15 49329939 49329939 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014701.2 -1 provisional p.P18S 1.000 216 0% 162 21.6% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C15orf33 196951 genome.wustl.edu 37 15 49868985 49868985 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152647.2 -1 validated p.D167Y 1.000 181 0.6% 105 11.4% 7 0% probably_damaging(0.959) deleterious(0.01) deleterious(0.808) NULL DTWD1 56986 genome.wustl.edu 37 15 49926882 49926882 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144955.1 +1 validated p.F186 0.001 134 0% 65 18.5% 18 27.7% - - - HMMPfam_DTW SLC27A2 11001 genome.wustl.edu 37 15 50489761 50489761 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003645.3 +1 reviewed p.Y181 0.970 205 0% 153 10.5% 5 20% - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like SLC27A2 11001 genome.wustl.edu 37 15 50518195 50518195 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003645.3 +1 reviewed p.T393I 0.002 174 0% 71 16.9% 3 0% benign(0.035) deleterious(0.04) neutral(0.351) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like HDC 3067 genome.wustl.edu 37 15 50534642 50534642 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002112.2 -1 validated p.A602T 0.009 119 0% 60 13.3% 0 - benign(0.028) deleterious(0) neutral(0.446) NULL HDC 3067 genome.wustl.edu 37 15 50540519 50540519 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002112.2 -1 validated p.R355* 1.000 131 0% 78 16.7% 0 - - - - HMMPfam_Pyridoxal_deC,superfamily_PyrdxlP-dep_Trfase_major USP8 9101 genome.wustl.edu 37 15 50789404 50789404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128610.1 +1 validated p.P1005L 1.000 197 0% 87 33.3% 16 37.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_UCH,superfamily_SSF54001 TRPM7 54822 genome.wustl.edu 37 15 50862085 50862085 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017672.4 -1 reviewed p.P1822 0.998 266 0% 184 25% 6 0% - - - superfamily_Kinase_like SPPL2A 84888 genome.wustl.edu 37 15 51012235 51012235 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032802.3 -1 reviewed p.A464T 1.000 461 0% 185 21.6% 55 21.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00730,HMMPfam_Peptidase_A22B SPPL2A 84888 genome.wustl.edu 37 15 51041004 51041004 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032802.3 -1 reviewed p.V81I 0.000 383 0% 141 23.4% 13 23% benign(0.048) tolerated(0.18) neutral(0.059) HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain AP4E1 23431 genome.wustl.edu 37 15 51250835 51250835 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007347.3 +1 validated p.A565 0.975 266 0% 85 23.5% 1 100% - - - HMMPfam_Adaptin_N,superfamily_ARM-type_fold CYP19A1 1588 genome.wustl.edu 37 15 51503073 51503073 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000103.3 -1 reviewed p.D482Y 0.110 437 0.2% 106 25.5% 0 - possibly_damaging(0.904) deleterious(0.05) deleterious(0.704) HMMPfam_p450,superfamily_Cytochrome_P450 GLDN 342035 genome.wustl.edu 37 15 51687179 51687179 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181789.2 +1 validated e5+1 1.000 247 0% 78 21.8% 0 - - - - - DMXL2 23312 genome.wustl.edu 37 15 51766565 51766565 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015263.3 -1 validated p.R2396* 1.000 146 0% 60 25% 6 50% - - - superfamily_WD40 repeat-like DMXL2 23312 genome.wustl.edu 37 15 51766690 51766690 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015263.3 -1 validated p.S2354N 1.000 337 0% 171 17.5% 3 100% unknown(0) deleterious(0) - superfamily_WD40 repeat-like DMXL2 23312 genome.wustl.edu 37 15 51790985 51790985 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015263.3 -1 validated p.T1479M 0.999 496 0.2% 257 18.7% 0 - probably_damaging(0.994) tolerated(0.11) deleterious(0.724) NULL DMXL2 23312 genome.wustl.edu 37 15 51791950 51791950 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015263.3 -1 validated p.K1157N 0.998 191 0% 84 25% 3 0% benign(0.001) tolerated(0.44) neutral(0.013) NULL TMOD3 29766 genome.wustl.edu 37 15 52179813 52179813 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014547.4 +1 validated p.P104H 0.998 148 0% 281 24.2% 22 31.8% probably_damaging(0.977) tolerated(0.07) deleterious(0.738) HMMPfam_Tropomodulin MAPK6 5597 genome.wustl.edu 37 15 52350869 52350869 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002748.3 +1 reviewed p.S247Y 1.000 264 0% 102 15.7% 7 57.1% probably_damaging(1) tolerated(0.4) deleterious(0.516) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MAPK6 5597 genome.wustl.edu 37 15 52353532 52353532 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002748.3 +1 reviewed p.P301L 1.000 358 0% 82 12.2% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MYO5C 55930 genome.wustl.edu 37 15 52497311 52497311 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018728.2 -1 validated p.G1524D 1.000 53 0% 32 21.9% 18 5.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MYO5C 55930 genome.wustl.edu 37 15 52534252 52534252 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018728.2 -1 validated p.Y850C 1.000 255 0% 146 10.3% 8 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO5C 55930 genome.wustl.edu 37 15 52563995 52563995 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018728.2 -1 validated p.S266Y 0.993 308 0.3% 254 10.6% 6 16.6% probably_damaging(0.961) deleterious(0) deleterious(0.849) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO5C 55930 genome.wustl.edu 37 15 52571081 52571081 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018728.2 -1 validated p.K146N 1.000 196 0% 171 22.2% 9 44.4% benign(0.113) tolerated(0.05) neutral(0.354) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO5A 4644 genome.wustl.edu 37 15 52667587 52667587 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000259.3 -1 reviewed p.R831C 0.115 180 0% 92 20.7% 0 - possibly_damaging(0.785) deleterious(0) deleterious(0.738) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO5A 4644 genome.wustl.edu 37 15 52672055 52672055 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000259.3 -1 reviewed p.E688G 1.000 117 0% 69 31.9% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases ARPP19 10776 genome.wustl.edu 37 15 52849357 52849357 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006628.4 -1 validated p.Y36 1.000 398 0% 333 21.9% 34 41.1% - - - HMMPfam_Endosulfine FAM214A 56204 genome.wustl.edu 37 15 52885785 52885785 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019600.2 -1 validated p.S933F 1.000 206 0% 80 18.8% 23 43.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ONECUT1 3175 genome.wustl.edu 37 15 53049845 53049845 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004498.1 -1 provisional p.N435 0.980 460 0% 147 19.7% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like UNC13C 440279 genome.wustl.edu 37 15 54305914 54305914 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080534.1 +1 provisional p.H272Y 1.000 124 0% 31 16.1% 0 - benign(0) tolerated(0.53) neutral(0.007) NULL UNC13C 440279 genome.wustl.edu 37 15 54630629 54630629 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080534.1 +1 provisional p.S1552Y 1.000 238 0% 125 20% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF1041 PIGB 9488 genome.wustl.edu 37 15 55642961 55642961 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004855.4 +1 reviewed p.N396K 0.100 287 0% 199 23.1% 31 48.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_transf_22 CCPG1 9236 genome.wustl.edu 37 15 55652969 55652969 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004748.3 -1 validated p.Q334 1.000 468 0% 259 22% 8 25% - - - NULL PRTG 283659 genome.wustl.edu 37 15 55933315 55933315 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173814.4 -1 validated p.C711 0.797 407 0% 277 27.1% 0 - - - - NULL PRTG 283659 genome.wustl.edu 37 15 55971641 55971641 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173814.4 -1 validated p.P326S 1.000 180 0% 78 20.5% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_SSF48726 NEDD4 4734 genome.wustl.edu 37 15 56155161 56155161 + Nonsense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198400.2 -1 validated p.Y555* 1.000 589 0% 172 23.8% 2 0% - - - HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP RFX7 64864 genome.wustl.edu 37 15 56386692 56386692 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022841.5 -1 validated p.S1078 0.995 368 0% 158 20.3% 4 25% - - - NULL RFX7 64864 genome.wustl.edu 37 15 56388240 56388240 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022841.5 -1 validated p.P562 0.022 240 0% 124 32.3% 2 50% - - - NULL MNS1 55329 genome.wustl.edu 37 15 56736868 56736868 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018365.2 -1 reviewed p.R154C 1.000 697 0.1% 438 11.4% 11 27.2% possibly_damaging(0.913) deleterious(0.01) deleterious(0.770) NULL ZNF280D 54816 genome.wustl.edu 37 15 56923856 56923856 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017661.2 -1 validated p.L927P 1.000 377 0% 147 19.7% 11 45.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL GCOM1 145781 genome.wustl.edu 37 15 57953706 57953706 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018090.1 +1 reviewed p.E393A 1.000 266 0% 68 13.2% 0 - probably_damaging(0.965) deleterious(0.01) deleterious(0.812) NULL POLR2M 81488 genome.wustl.edu 37 15 58001498 58001498 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015532.3 +1 reviewed p.V234L 1.000 184 0% 155 19.4% 24 41.6% probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL AQP9 366 genome.wustl.edu 37 15 58458984 58458984 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020980.3 +1 reviewed p.A75V 0.170 445 0.2% 102 19.6% 0 - benign(0.019) deleterious(0.02) neutral(0.384) HMMPfam_MIP,superfamily_Aquaporin-like ADAM10 102 genome.wustl.edu 37 15 58904021 58904021 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001110.2 -1 reviewed p.V561M 1.000 389 0% 221 17.6% 84 44% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HSP90AB4P 664618 genome.wustl.edu 37 15 58984956 58984956 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000380522 -1 known p.K123N 1.000 61 0% 54 24.1% 0 - - - - HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase FAM63B 54629 genome.wustl.edu 37 15 59102504 59102504 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040450.1 +1 validated p.R347* 0.997 480 0.2% 227 22.5% 0 - - - - HMMPfam_DUF544 CCNB2 9133 genome.wustl.edu 37 15 59409446 59409446 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004701.2 +1 reviewed p.T285I 1.000 331 0% 157 28% 165 42.4% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like MYO1E 4643 genome.wustl.edu 37 15 59445850 59445850 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004998.2 -1 validated p.R1007* 0.989 146 0% 134 30.6% 27 7.4% - - - NULL LDHAL6B 92483 genome.wustl.edu 37 15 59499308 59499308 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033195.1 +1 provisional p.L57I 0.107 209 0% 231 16% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) superfamily_NAD(P)-bd FAM81A 145773 genome.wustl.edu 37 15 59808969 59808969 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152450.2 +1 validated p.H304 0.791 564 0% 206 18.9% 1 0% - - - NULL GCNT3 9245 genome.wustl.edu 37 15 59911073 59911073 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004751.2 +1 reviewed p.D212 0.994 289 0% 131 24.4% 18 33.3% - - - HMMPfam_Branch GCNT3 9245 genome.wustl.edu 37 15 59911142 59911142 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004751.2 +1 reviewed p.S235 1.000 199 0% 94 25.5% 15 66.6% - - - HMMPfam_Branch BNIP2 663 genome.wustl.edu 37 15 59970200 59970200 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004330.2 -1 reviewed p.R249* 1.000 585 0% 858 24.2% 9 0% - - - NULL BNIP2 663 genome.wustl.edu 37 15 59971878 59971878 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004330.2 -1 reviewed p.L191V 0.997 411 0% 451 21.5% 11 63.6% possibly_damaging(0.688) tolerated(0.14) deleterious(0.495) NULL NARG2 79664 genome.wustl.edu 37 15 60728414 60728414 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024611.4 -1 validated p.A813V 1.000 116 0% 76 18.4% 21 28.5% probably_damaging(0.996) tolerated(0.07) deleterious(0.780) HMMPfam_NARG2_C RORA 6095 genome.wustl.edu 37 15 60793161 60793161 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134260.2 -1 reviewed p.A464T 1.000 264 0.8% 122 26.2% 2 0% benign(0.001) tolerated(0.11) neutral(0.272) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain VPS13C 54832 genome.wustl.edu 37 15 62147105 62147105 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020821.1 -1 validated p.R3709* 0.018 219 0% 72 20.8% 26 53.8% - - - NULL VPS13C 54832 genome.wustl.edu 37 15 62173125 62173125 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020821.1 -1 validated p.A3269T 1.000 164 0% 71 29.6% 13 30.7% probably_damaging(1) tolerated(0.27) deleterious(0.533) NULL LOC100289289 100289289 genome.wustl.edu 37 15 62548101 62548101 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343368.1 -1 model p.R508H 0.194 66 0% 17 47.1% 0 - - - - NULL TLN2 83660 genome.wustl.edu 37 15 63097931 63097931 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015059.2 +1 reviewed p.A2204T 1.000 116 0% 49 22.4% 46 52.1% benign(0.39) deleterious(0.01) deleterious(0.530) NULL TLN2 83660 genome.wustl.edu 37 15 63128212 63128212 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015059.2 +1 reviewed p.Q2438H 1.000 61 0% 54 22.2% 24 50% possibly_damaging(0.833) tolerated(0.07) deleterious(0.637) HMMPfam_I_LWEQ,HMMSmart_ILWEQ,superfamily_SSF109885 CA12 771 genome.wustl.edu 37 15 63619359 63619359 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001218.3 -1 reviewed p.F327 1.000 793 0% 431 14.2% 68 27.9% - - - NULL HERC1 8925 genome.wustl.edu 37 15 63958142 63958142 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003922.3 -1 reviewed p.E2844G 1.000 160 0.6% 72 23.6% 3 33.3% probably_damaging(0.959) - - NULL PPIB 5479 genome.wustl.edu 37 15 64452367 64452367 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000942.4 -1 reviewed p.F93L 1.000 353 0% 465 20.2% 1448 36.1% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase ZNF609 23060 genome.wustl.edu 37 15 64791994 64791994 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015042.1 +1 provisional p.G126* 1.000 158 0% 102 28.4% 5 60% - - - NULL PDCD7 10081 genome.wustl.edu 37 15 65421509 65421509 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005707.1 -1 reviewed e2-1 1.000 407 0% 445 20.2% 0 - - - - - CILP 8483 genome.wustl.edu 37 15 65494236 65494236 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003613.3 -1 reviewed p.S387Y 1.000 134 0.7% 80 30% 1 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMSmart_SM00409,superfamily_Immunoglobulin CILP 8483 genome.wustl.edu 37 15 65497795 65497795 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003613.3 -1 reviewed p.R145H 0.767 28 0% 20 35% 0 - probably_damaging(0.971) tolerated(0.13) deleterious(0.665) superfamily_TSP-1 type 1 repeat PARP16 54956 genome.wustl.edu 37 15 65558956 65558956 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017851.4 -1 provisional p.R155C 1.000 608 0% 273 26% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PARP,superfamily_SSF56399 IGDCC4 57722 genome.wustl.edu 37 15 65682636 65682636 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020962.1 -1 provisional p.H755 0.765 292 0% 285 20% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III IGDCC4 57722 genome.wustl.edu 37 15 65684566 65684566 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020962.1 -1 provisional p.G676 0.001 41 0% 46 21.7% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III DPP8 54878 genome.wustl.edu 37 15 65748651 65748651 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_197960.2 -1 reviewed p.A693V 1.000 192 0% 116 21.6% 8 12.5% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases DPP8 54878 genome.wustl.edu 37 15 65771369 65771369 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_197960.2 -1 reviewed p.D451 1.000 261 0% 206 23.8% 1 100% - - - HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain RAB11A 8766 genome.wustl.edu 37 15 66170194 66170194 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004663.3 +1 reviewed p.D111Y 1.000 383 0% 277 23.5% 311 45.9% possibly_damaging(0.933) deleterious(0) deleterious(0.824) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases MEGF11 84465 genome.wustl.edu 37 15 66215289 66215289 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032445.2 -1 validated p.T565M 0.884 49 0% 47 25.5% 2 50% benign(0.006) tolerated(0.11) neutral(0.272) HMMSmart_SM00180,PatternScan_EGF_2 DIS3L 115752 genome.wustl.edu 37 15 66607396 66607396 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133375.3 +1 validated p.I196 0.057 234 0% 104 26% 12 25% - - - NULL ENSG00000247991 0 genome.wustl.edu 37 15 66618145 66618145 + RNA SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000499718 -1 novel NULL 0.000 196 0% 63 23.8% 0 - - - - - DIS3L 115752 genome.wustl.edu 37 15 66625248 66625248 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133375.3 +1 validated p.T869 0.979 143 0% 80 20% 24 54.1% - - - NULL TIPIN 54962 genome.wustl.edu 37 15 66643901 66643901 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017858.2 -1 validated p.V84I 0.996 457 0% 349 15.2% 18 38.8% possibly_damaging(0.793) tolerated(0.36) neutral(0.318) HMMPfam_Swi3 RPL4 6124 genome.wustl.edu 37 15 66792503 66792503 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000968.2 -1 reviewed p.H310R 0.991 427 0% 450 23.6% 3750 40.3% benign(0) tolerated(0.59) neutral(0.004) NULL ZWILCH 55055 genome.wustl.edu 37 15 66813499 66813499 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017975.3 +1 validated p.D235N 1.000 238 0% 124 26.6% 11 45.4% possibly_damaging(0.905) tolerated(0.06) deleterious(0.682) HMMPfam_DUF2352 SMAD3 4088 genome.wustl.edu 37 15 67358570 67358570 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005902.3 +1 reviewed p.Q26H 1.000 148 0% 174 20.1% 4 50% possibly_damaging(0.44) deleterious(0) deleterious(0.588) HMMSmart_SM00523,superfamily_SMAD MH1 domain IQCH 64799 genome.wustl.edu 37 15 67664857 67664857 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031715.2 +1 validated p.F388V 0.000 86 0% 25 16% 2 50% benign(0.01) tolerated(0.33) neutral(0.025) HMMPfam_IQ SKOR1 390598 genome.wustl.edu 37 15 68118865 68118865 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031807.1 +1 provisional p.K224N 1.000 154 0% 177 25.4% 1 0% benign(0.189) deleterious(0.01) neutral(0.423) superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind CALML4 91860 genome.wustl.edu 37 15 68491960 68491960 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033429.2 -1 validated p.D75N 0.997 22 0% 15 40% 28 46.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00054,superfamily_EF-hand ITGA11 22801 genome.wustl.edu 37 15 68612636 68612636 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004439.1 -1 reviewed p.R835C 0.711 104 0% 64 31.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Integrin_alpha2,superfamily_Integrin domains ITGA11 22801 genome.wustl.edu 37 15 68620452 68620452 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004439.1 -1 reviewed p.F684L 0.628 172 0% 117 25.6% 2 0% benign(0.011) tolerated(0.42) neutral(0.015) HMMPfam_Integrin_alpha2,superfamily_Integrin domains NOX5 79400 genome.wustl.edu 37 15 69339821 69339821 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024505.3 +1 validated p.I569 0.989 144 0% 105 23.8% 0 - - - - HMMPfam_NAD_binding_6,superfamily_SSF52343 GLCE 26035 genome.wustl.edu 37 15 69548518 69548518 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015554.1 +1 validated p.E125K 1.000 566 0% 200 25.5% 0 - probably_damaging(0.996) tolerated(0.07) deleterious(0.780) NULL GLCE 26035 genome.wustl.edu 37 15 69553591 69553591 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015554.1 +1 validated p.T251N 0.112 446 0% 181 21.5% 3 0% benign(0.001) tolerated(0.59) neutral(0.004) NULL KIF23 9493 genome.wustl.edu 37 15 69714463 69714463 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138555.1 +1 reviewed p.R150Q 1.000 211 0% 219 20.5% 12 16.6% possibly_damaging(0.921) tolerated(0.08) deleterious(0.671) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF23 9493 genome.wustl.edu 37 15 69732265 69732265 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138555.1 +1 reviewed p.T579N 0.879 270 0% 170 21.2% 24 25% benign(0.019) tolerated(0.41) neutral(0.016) NULL RPLP1 6176 genome.wustl.edu 37 15 69745320 69745320 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003.2 +1 reviewed p.Y11 1.000 18 0% 20 20% 5317 34.1% - - - NULL UACA 55075 genome.wustl.edu 37 15 70949415 70949415 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018003.2 -1 validated p.R1411W 1.000 105 0% 54 22.2% 65 36.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL UACA 55075 genome.wustl.edu 37 15 70952524 70952524 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018003.2 -1 validated p.A1382V 0.994 298 0% 129 23.3% 85 44.7% possibly_damaging(0.845) deleterious(0.02) deleterious(0.707) NULL UACA 55075 genome.wustl.edu 37 15 70960611 70960611 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018003.2 -1 validated p.V804 0.009 364 0% 156 24.4% 18 55.5% - - - NULL UACA 55075 genome.wustl.edu 37 15 70968848 70968848 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018003.2 -1 validated p.R372I 0.231 339 0% 151 17.9% 15 40% benign(0.315) deleterious(0.01) deleterious(0.504) NULL MYO9A 4649 genome.wustl.edu 37 15 72122458 72122458 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006901.2 -1 validated p.Q2344H 1.000 212 0% 83 22.9% 6 50% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL MYO9A 4649 genome.wustl.edu 37 15 72154909 72154909 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006901.2 -1 validated p.S2008I 1.000 473 0% 159 20.8% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain MYO9A 4649 genome.wustl.edu 37 15 72244231 72244231 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006901.2 -1 validated p.D730V 1.000 315 0% 148 26.4% 1 0% benign(0.156) tolerated(0.06) neutral(0.337) HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYO9A 4649 genome.wustl.edu 37 15 72260423 72260423 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006901.2 -1 validated p.H630Y 1.000 455 0% 183 20.2% 1 100% benign(0) tolerated(0.98) - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases PKM2 5315 genome.wustl.edu 37 15 72502716 72502716 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002654.3 -1 reviewed p.P117L 1.000 162 0% 122 25.4% 1082 41.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_PK beta-barrel domain-like,HMMPfam_PK,superfamily_Phosphoenolpyruvate/pyruvate domain PARP6 56965 genome.wustl.edu 37 15 72534243 72534243 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020214.2 -1 provisional p.V597I 1.000 132 0% 87 24.1% 63 44.4% possibly_damaging(0.94) tolerated(0.2) neutral(0.434) superfamily_ADP-ribosylation CELF6 60677 genome.wustl.edu 37 15 72582354 72582354 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052840.4 -1 reviewed p.A177T 1.000 35 0% 61 24.6% 2 50% unknown(0) deleterious(0) - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD HEXA 3073 genome.wustl.edu 37 15 72638616 72638616 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000520.4 -1 reviewed p.G461* 1.000 118 0% 85 14.1% 244 3.2% - - - HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases ARIH1 25820 genome.wustl.edu 37 15 72873142 72873142 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005744.3 +1 validated p.R429H 1.000 243 0% 90 17.8% 14 42.8% possibly_damaging(0.938) deleterious(0) deleterious(0.828) NULL NEO1 4756 genome.wustl.edu 37 15 73408911 73408911 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002499.3 +1 validated p.Y54C 1.000 108 0% 34 17.6% 0 - probably_damaging(0.989) tolerated(0.13) deleterious(0.692) PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_I-set,superfamily_Immunoglobulin NEO1 4756 genome.wustl.edu 37 15 73580687 73580687 + Silent SNP T T G rs112824920 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002499.3 +1 validated p.S1148 1.000 175 0% 134 19.4% 33 54.5% - - - HMMPfam_Neogenin_C NEO1 4756 genome.wustl.edu 37 15 73585794 73585794 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002499.3 +1 validated p.S1269I 1.000 366 0% 182 9.9% 58 12% possibly_damaging(0.877) tolerated(0.41) neutral(0.357) HMMPfam_Neogenin_C HCN4 10021 genome.wustl.edu 37 15 73624535 73624535 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005477.2 -1 reviewed p.Q436H 1.000 135 0% 115 23.5% 0 - benign(0.429) tolerated(0.1) neutral(0.426) HMMPfam_Ion_trans,superfamily_SSF81324 NPTN 27020 genome.wustl.edu 37 15 73884373 73884373 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012428.3 -1 reviewed p.S182I 1.000 465 0% 164 24.4% 68 36.7% probably_damaging(0.996) tolerated(0.12) deleterious(0.722) HMMSmart_IG,superfamily_SSF48726 LOC100287587 100287587 genome.wustl.edu 37 15 74043373 74043373 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343351.1 +1 model p.D228N 1.000 83 0% 87 19.5% 9 66.6% - - - NULL PML 5371 genome.wustl.edu 37 15 74325572 74325572 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033238.2 +1 reviewed p.E492* 1.000 139 0% 146 25.3% 104 1.9% - - - NULL ISLR2 57611 genome.wustl.edu 37 15 74425419 74425419 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130136.1 +1 validated p.H108 1.000 32 0% 40 30% 3 0% - - - HMMPfam_LRR_1,superfamily_SSF52058 ISLR2 57611 genome.wustl.edu 37 15 74427137 74427137 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130136.1 +1 validated p.A681V 0.171 50 0% 63 23.8% 0 - benign(0) tolerated(0.49) neutral(0.011) NULL ISLR 3671 genome.wustl.edu 37 15 74467824 74467824 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005545.3 +1 validated p.A209T 0.375 19 0% 22 22.7% 104 0% benign(0) tolerated(0.43) neutral(0.013) HMMPfam_LRRCT,HMMSmart_LRRCT,superfamily_SSF52058 STRA6 64220 genome.wustl.edu 37 15 74473239 74473239 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142617.1 -1 reviewed p.S575I 1.000 138 0% 139 19.4% 31 19.3% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL SEMA7A 8482 genome.wustl.edu 37 15 74708248 74708248 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003612.3 -1 reviewed p.A294T 0.019 196 0% 159 24.5% 9 0% benign(0) tolerated(0.73) neutral(0.002) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema CLK3 1198 genome.wustl.edu 37 15 74919714 74919714 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130028.1 +1 reviewed p.T428I 1.000 440 0% 306 24.5% 42 38% possibly_damaging(0.942) tolerated(0.2) neutral(0.436) HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CLK3 1198 genome.wustl.edu 37 15 74920375 74920375 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130028.1 +1 reviewed p.R517 0.690 224 0% 165 19.4% 69 36.2% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CYP1A2 1544 genome.wustl.edu 37 15 75042295 75042295 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000761.3 +1 reviewed p.Y72 0.641 71 0% 75 24% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 CSK 1445 genome.wustl.edu 37 15 75093083 75093083 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127190.1 +1 validated p.F206 0.996 120 0% 142 12.7% 132 9% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain CSK 1445 genome.wustl.edu 37 15 75094066 75094066 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127190.1 +1 validated p.E306 1.000 147 0% 119 17.6% 184 27.7% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ULK3 25989 genome.wustl.edu 37 15 75131620 75131620 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099436.1 -1 validated p.P316H 1.000 104 0% 180 37.8% 36 58.3% probably_damaging(0.996) tolerated(0.06) deleterious(0.784) HMMPfam_MIT,HMMSmart_SM00745 ULK3 25989 genome.wustl.edu 37 15 75132586 75132586 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099436.1 -1 validated p.R229W 1.000 74 0% 76 21.1% 22 22.7% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ULK3 25989 genome.wustl.edu 37 15 75134534 75134534 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099436.1 -1 validated p.W82* 1.000 248 0% 304 26.6% 17 52.9% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SCAMP2 10066 genome.wustl.edu 37 15 75142988 75142988 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005697.3 -1 reviewed p.L167 1.000 165 0% 135 21.5% 143 40.5% - - - HMMPfam_SCAMP SCAMP5 192683 genome.wustl.edu 37 15 75311306 75311306 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138967.3 +1 validated p.T230 0.482 88 0% 82 17.1% 5 80% - - - NULL PTPN9 5780 genome.wustl.edu 37 15 75761275 75761275 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002833.2 -1 reviewed p.G539 1.000 99 0% 72 25% 39 35.8% - - - HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 PTPN9 5780 genome.wustl.edu 37 15 75815471 75815471 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002833.2 -1 reviewed p.A138V 1.000 300 0% 163 22.1% 12 25% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C CSPG4 1464 genome.wustl.edu 37 15 75968548 75968548 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001897.4 -1 reviewed p.P2104 0.250 18 0.000 9 0.444 1 0% - - - NULL CSPG4 1464 genome.wustl.edu 37 15 75968781 75968781 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001897.4 -1 reviewed p.L2027M 0.959 46 0% 41 22% 2 0% possibly_damaging(0.935) tolerated(0.29) neutral(0.410) NULL CSPG4 1464 genome.wustl.edu 37 15 75982187 75982187 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001897.4 -1 reviewed p.P407S 0.003 21 0% 31 25.8% 1 100% benign(0) tolerated(0.69) neutral(0.002) NULL UBE2Q2 92912 genome.wustl.edu 37 15 76191777 76191777 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173469.2 +1 validated p.T369I 1.000 356 0% 393 24.7% 11 27.2% probably_damaging(0.993) deleterious(0) deleterious(0.895) superfamily_UBC-like FBXO22 26263 genome.wustl.edu 37 15 76225047 76225047 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_147188.1 +1 reviewed p.A272 0.697 293 0% 146 11.6% 52 11.5% - - - NULL ISL2 64843 genome.wustl.edu 37 15 76632768 76632768 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145805.1 +1 provisional p.K221N 1.000 23 0% 21 23.8% 0 - probably_damaging(0.995) tolerated(0.07) deleterious(0.776) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like SCAPER 49855 genome.wustl.edu 37 15 76763553 76763553 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020843.2 -1 validated p.T1025 1.000 281 0% 89 19.1% 5 0% - - - NULL SCAPER 49855 genome.wustl.edu 37 15 77134142 77134142 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020843.2 -1 validated p.N108T 1.000 449 0% 255 24.3% 2 0% probably_damaging(0.965) deleterious(0) deleterious(0.851) NULL SCAPER 49855 genome.wustl.edu 37 15 77176169 77176169 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000303521 -1 known p.E51D 0.002 533 0% 583 20.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SGK269 79834 genome.wustl.edu 37 15 77472047 77472047 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024776.2 -1 validated p.P741H 0.983 233 0% 83 27.7% 0 - possibly_damaging(0.46) deleterious(0.01) deleterious(0.556) NULL SGK269 79834 genome.wustl.edu 37 15 77474251 77474251 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024776.2 -1 validated p.T6 1.000 283 0% 111 29.7% 0 - - - - NULL LINGO1 84894 genome.wustl.edu 37 15 77907179 77907179 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032808.5 -1 validated p.S357L 1.000 113 0% 91 23.1% 5 0% probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like LOC440292 440292 genome.wustl.edu 37 15 78234780 78234780 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_496078.4 -1 model p.R185W 1.000 175 0% 171 8.8% 11 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_HCaRG TBC1D2B 23102 genome.wustl.edu 37 15 78310229 78310229 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144572.1 -1 validated p.R514Q 1.000 646 0% 500 22.6% 6 0% probably_damaging(1) tolerated(0.35) deleterious(0.520) NULL SH2D7 646892 genome.wustl.edu 37 15 78390828 78390828 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101404.1 +1 provisional p.D179N 0.010 121 0% 70 12.9% 0 - possibly_damaging(0.895) deleterious(0) deleterious(0.797) NULL SH2D7 646892 genome.wustl.edu 37 15 78393425 78393425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101404.1 +1 provisional p.G277D 0.153 52 0% 29 24.1% 0 - probably_damaging(0.99) tolerated(0.09) deleterious(0.738) NULL ACSBG1 23205 genome.wustl.edu 37 15 78472021 78472021 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015162.3 -1 reviewed p.A452V 0.995 131 0% 74 18.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ACSBG1 23205 genome.wustl.edu 37 15 78474356 78474356 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015162.3 -1 reviewed p.I342 1.000 71 0% 72 13.9% 0 - - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ACSBG1 23205 genome.wustl.edu 37 15 78487061 78487061 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015162.3 -1 reviewed p.A80 0.018 52 0% 41 31.7% 0 - - - - superfamily_Acetyl-CoA synthetase-like DNAJA4 55466 genome.wustl.edu 37 15 78565441 78565441 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000423642 +1 known e3-1 1.000 353 0% 382 22% 3 0% - - - - WDR61 80349 genome.wustl.edu 37 15 78580723 78580723 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025234.1 -1 provisional p.G188 1.000 403 0.2% 163 22.7% 101 45.5% - - - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 IREB2 3658 genome.wustl.edu 37 15 78781055 78781055 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004136.2 +1 validated p.R673Q 0.030 249 0% 187 27.8% 15 40% benign(0) tolerated(0.33) neutral(0.024) superfamily_Aconitase iron-sulfur domain CHRNA5 1138 genome.wustl.edu 37 15 78882523 78882523 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000745.2 +1 provisional p.L264F 1.000 361 0% 167 17.4% 4 75% probably_damaging(0.999) tolerated(0.16) deleterious(0.550) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM CHRNB4 1143 genome.wustl.edu 37 15 78922132 78922132 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000750.3 -1 validated p.R172H 1.000 196 0.5% 179 19% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD MORF4L1 10933 genome.wustl.edu 37 15 79170560 79170560 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206839.1 +1 validated p.R16* 1.000 592 0.3% 643 22.7% 96 19.7% - - - NULL MORF4L1 10933 genome.wustl.edu 37 15 79186455 79186455 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206839.1 +1 validated p.L268 1.000 264 0% 123 13.8% 250 10.4% - - - HMMPfam_MRG CTSH 1512 genome.wustl.edu 37 15 79215424 79215424 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004390.3 -1 reviewed p.H281 0.967 514 0% 415 10.6% 289 8.9% - - - PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases CTSH 1512 genome.wustl.edu 37 15 79224736 79224736 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004390.3 -1 reviewed p.A157V 0.003 95 0% 68 11.8% 217 3.2% - - - HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases RASGRF1 5923 genome.wustl.edu 37 15 79296448 79296448 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002891.4 -1 reviewed p.P731 0.460 60 0% 49 14.3% 0 - - - - HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF RASGRF1 5923 genome.wustl.edu 37 15 79323779 79323779 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002891.4 -1 reviewed p.L409M 1.000 273 0% 179 26.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) ANKRD34C 390616 genome.wustl.edu 37 15 79586152 79586152 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343327.1 +1 model p.V176L 0.677 150 0% 109 19.3% 0 - benign(0) tolerated(0.33) neutral(0.024) NULL KIAA1024 23251 genome.wustl.edu 37 15 79755408 79755408 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015206.2 +1 validated e2-1 1.000 78 0% 52 23.1% 0 - - - - - ARNT2 9915 genome.wustl.edu 37 15 80855469 80855469 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014862.3 +1 reviewed p.R402Q 1.000 280 0.4% 240 29.2% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00086,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain) FAM108C1 58489 genome.wustl.edu 37 15 81046633 81046633 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021214.1 +1 validated p.G304 0.990 183 0% 57 24.6% 58 48.2% - - - superfamily_alpha/beta-Hydrolases C15orf26 161502 genome.wustl.edu 37 15 81427672 81427672 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173528.2 +1 predicted p.R44I 0.909 138 0% 209 20.6% 0 - probably_damaging(0.998) tolerated(0.12) deleterious(0.735) NULL IL16 3603 genome.wustl.edu 37 15 81578171 81578171 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172217.3 +1 reviewed p.Q444H 1.000 272 0% 165 21.2% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL IL16 3603 genome.wustl.edu 37 15 81582821 81582821 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172217.3 +1 reviewed p.V454M 1.000 390 0% 209 20.6% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL TMC3 342125 genome.wustl.edu 37 15 81625508 81625508 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080532.1 -1 provisional p.S852L 0.998 252 0% 124 14.5% 0 - possibly_damaging(0.879) deleterious(0) deleterious(0.787) NULL EFTUD1 79631 genome.wustl.edu 37 15 82530761 82530761 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024580.5 -1 validated p.E206 0.999 398 0% 155 27.1% 4 50% - - - HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases FAM154B 283726 genome.wustl.edu 37 15 82574589 82574589 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008226.1 +1 predicted p.P128H 0.888 286 0% 126 11.9% 0 - probably_damaging(1) tolerated(0.11) deleterious(0.772) NULL FAM154B 283726 genome.wustl.edu 37 15 82574968 82574968 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008226.1 +1 predicted p.D254E 1.000 197 0% 83 31.3% 2 100% benign(0.137) tolerated(0.82) neutral(0.012) NULL FAM154B 283726 genome.wustl.edu 37 15 82575145 82575145 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008226.1 +1 predicted p.F313 0.949 196 0% 110 26.4% 0 - - - - NULL FSD2 123722 genome.wustl.edu 37 15 83455955 83455955 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007122.2 -1 provisional p.A63V 0.000 400 0% 197 20.3% 0 - benign(0) deleterious(0) neutral(0.445) NULL HOMER2 9455 genome.wustl.edu 37 15 83519971 83519971 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199330.1 -1 reviewed p.L270I 1.000 399 0% 389 18.3% 19 47.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL HOMER2 9455 genome.wustl.edu 37 15 83561463 83561463 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199330.1 -1 reviewed p.R46W 1.000 357 0% 194 18% 34 41.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like C15orf40 123207 genome.wustl.edu 37 15 83680237 83680237 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000514272 -1 known e1+1 0.000 57 0% 51 13.7% 0 - - - - - C15orf40 123207 genome.wustl.edu 37 15 83680252 83680252 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000510873 -1 known p.P31L 0.850 48 0% 49 26.5% 12 41.6% - - - NULL BNC1 646 genome.wustl.edu 37 15 83926758 83926758 + Missense_Mutation SNP A A C rs146663253 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001717.3 -1 reviewed p.D807E 0.103 360 0% 91 14.3% 0 - benign(0.003) tolerated(0.06) neutral(0.323) NULL ADAMTSL3 57188 genome.wustl.edu 37 15 84539594 84539594 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207517.2 +1 validated p.H281 1.000 122 0% 43 14% 0 - - - - NULL LOC648809 648809 genome.wustl.edu 37 15 84784859 84784859 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001713991.2 +1 model p.A42T 1.000 324 0% 99 26.3% 0 - - - - superfamily_Translation proteins LOC100288043 100288043 genome.wustl.edu 37 15 85201237 85201237 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343385.1 +1 model p.E8* 1.000 30 0% 61 18% 5 0% - - - NULL ZNF592 9640 genome.wustl.edu 37 15 85327398 85327398 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014630.2 +1 validated p.L498I 0.994 41 0% 31 29% 20 35% probably_damaging(0.98) tolerated(0.12) deleterious(0.684) NULL ALPK3 57538 genome.wustl.edu 37 15 85400602 85400602 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020778.4 +1 validated p.S1080N 0.000 46 0% 55 30.9% 0 - possibly_damaging(0.83) deleterious(0) deleterious(0.760) NULL ALPK3 57538 genome.wustl.edu 37 15 85411500 85411500 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020778.4 +1 validated p.S1846F 0.997 89 0% 85 22.4% 0 - probably_damaging(0.985) deleterious(0.01) deleterious(0.838) NULL SLC28A1 9154 genome.wustl.edu 37 15 85431038 85431038 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004213.3 +1 validated p.P16H 0.000 265 0% 174 22.4% 0 - benign(0.13) deleterious(0.03) neutral(0.376) NULL SLC28A1 9154 genome.wustl.edu 37 15 85461797 85461797 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004213.3 +1 validated p.L280I 1.000 441 0% 284 21.5% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Gate SLC28A1 9154 genome.wustl.edu 37 15 85478348 85478348 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004213.3 +1 validated p.L436M 1.000 253 0% 140 26.4% 1 0% possibly_damaging(0.76) deleterious(0.04) deleterious(0.630) HMMPfam_Nucleos_tra2_C SLC28A1 9154 genome.wustl.edu 37 15 85486739 85486739 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004213.3 +1 validated p.I549L 0.995 237 0% 122 11.5% 0 - possibly_damaging(0.722) deleterious(0) deleterious(0.707) HMMPfam_Nucleos_tra2_C PDE8A 5151 genome.wustl.edu 37 15 85666342 85666342 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002605.2 +1 validated p.T668I 1.000 206 0% 85 24.7% 12 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like AKAP13 11214 genome.wustl.edu 37 15 86266492 86266492 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006738.4 +1 reviewed p.R2233Q 1.000 525 0% 176 23.3% 14 28.5% possibly_damaging(0.885) tolerated(0.09) deleterious(0.642) NULL AKAP13 11214 genome.wustl.edu 37 15 86283466 86283466 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006738.4 +1 reviewed p.S2528I 0.997 559 0% 336 21.1% 6 50% probably_damaging(0.965) deleterious(0.02) deleterious(0.790) NULL NTRK3 4916 genome.wustl.edu 37 15 88669523 88669523 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012338.1 -1 reviewed p.R459W 1.000 425 0% 190 26.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MRPS11 64963 genome.wustl.edu 37 15 89018364 89018364 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022839.2 +1 reviewed p.A102D 0.015 176 0% 89 18% 94 37.2% possibly_damaging(0.561) tolerated(0.33) neutral(0.215) HMMPfam_Ribosomal_S11,superfamily_Translational machinery components DET1 55070 genome.wustl.edu 37 15 89074219 89074219 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017996.3 -1 validated p.H251Y 1.000 113 0% 71 16.9% 6 16.6% benign(0.167) tolerated(0.16) neutral(0.074) HMMPfam_Det1 FANCI 55215 genome.wustl.edu 37 15 89856193 89856193 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113378.1 +1 reviewed p.A1237V 0.017 139 0% 146 15.1% 82 43.9% benign(0.174) tolerated(0.12) neutral(0.277) NULL C15orf42 90381 genome.wustl.edu 37 15 90142590 90142590 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152259.3 +1 validated p.R646C 0.984 183 0% 112 21.4% 0 - probably_damaging(0.977) tolerated(0.06) deleterious(0.742) NULL KIF7 374654 genome.wustl.edu 37 15 90173546 90173546 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198525.2 -1 validated p.R1097I 1.000 89 0% 92 30.4% 3 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL KIF7 374654 genome.wustl.edu 37 15 90195922 90195922 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198525.2 -1 validated p.E80D 1.000 66 1.5% 137 29.9% 4 25% benign(0.027) tolerated(0.54) neutral(0.009) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 PLIN1 5346 genome.wustl.edu 37 15 90216567 90216567 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145311.1 -1 reviewed p.T42A 0.851 54 0% 40 12.5% 1 100% benign(0.004) tolerated(0.46) neutral(0.012) HMMPfam_Perilipin WDR93 56964 genome.wustl.edu 37 15 90274700 90274700 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020212.1 +1 provisional p.A413T 0.500 222 0% 115 14.8% 1 0% probably_damaging(1) tolerated(0.5) deleterious(0.510) superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase ANPEP 290 genome.wustl.edu 37 15 90340845 90340845 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001150.2 -1 reviewed p.K706 1.000 181 0% 122 12.3% 5 0% - - - NULL ANPEP 290 genome.wustl.edu 37 15 90344377 90344377 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001150.2 -1 reviewed p.R595K 0.000 181 0% 127 16.5% 6 0% benign(0) tolerated(0.93) - NULL ANPEP 290 genome.wustl.edu 37 15 90347126 90347126 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001150.2 -1 reviewed p.W429* 1.000 97 0% 83 21.7% 9 22.2% - - - HMMPfam_Peptidase_M1,superfamily_SSF55486 ANPEP 290 genome.wustl.edu 37 15 90347777 90347777 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001150.2 -1 reviewed p.P323 0.999 146 0% 108 16.7% 5 60% - - - HMMPfam_Peptidase_M1,superfamily_SSF55486 ANPEP 290 genome.wustl.edu 37 15 90348695 90348695 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001150.2 -1 reviewed e2-1 1.000 173 0% 110 14.5% 0 - - - - - ZNF710 374655 genome.wustl.edu 37 15 90622937 90622937 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198526.2 +1 validated p.G624D 0.999 44 0% 47 14.9% 12 25% benign(0.021) tolerated(0.07) neutral(0.320) NULL IDH2 3418 genome.wustl.edu 37 15 90628080 90628080 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002168.2 -1 reviewed p.K413 1.000 101 0% 118 13.6% 659 39.4% - - - HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like SEMA4B 10509 genome.wustl.edu 37 15 90760671 90760671 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020210.3 +1 validated p.G53D 1.000 110 0% 115 16.5% 10 50% benign(0.031) tolerated(0.15) neutral(0.242) superfamily_Sema domain SEMA4B 10509 genome.wustl.edu 37 15 90768593 90768593 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020210.3 +1 validated p.G495 0.048 95 0% 85 27.1% 66 53% - - - HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain SEMA4B 10509 genome.wustl.edu 37 15 90770880 90770880 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379122 +1 known e13+1 0.131 170 0% 149 32.2% 0 - - - - - SEMA4B 10509 genome.wustl.edu 37 15 90771449 90771449 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020210.3 +1 validated p.S696 0.003 257 0% 185 17.3% 134 39.5% - - - NULL CIB1 10519 genome.wustl.edu 37 15 90774234 90774234 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006384.3 -1 validated p.I162 0.323 131 0% 148 21.6% 1162 43.3% - - - HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand C15orf58 390637 genome.wustl.edu 37 15 90785259 90785259 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013657.2 +1 validated p.Q373H 0.044 63 0% 70 31.4% 10 40% possibly_damaging(0.63) tolerated(0.09) deleterious(0.516) NULL LOC728477 728477 genome.wustl.edu 37 15 90837583 90837583 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343383.1 +1 model p.E139D 0.084 12 0% 24 29.2% 1 100% - - - NULL ZNF774 342132 genome.wustl.edu 37 15 90903743 90903743 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004309.2 +1 validated p.R227I 1.000 90 0% 96 24% 1 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF774 342132 genome.wustl.edu 37 15 90904469 90904469 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004309.2 +1 validated p.R469H 0.000 150 0% 134 14.2% 0 - benign(0.284) tolerated(0.19) neutral(0.137) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers BLM 641 genome.wustl.edu 37 15 91292776 91292776 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000057.2 +1 reviewed p.A93D 0.000 169 0% 98 21.4% 6 50% benign(0.013) tolerated(0.27) neutral(0.034) NULL BLM 641 genome.wustl.edu 37 15 91298131 91298131 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000057.2 +1 reviewed p.M350I 0.000 346 0.3% 99 16.2% 2 50% benign(0.001) tolerated(0.1) neutral(0.286) NULL BLM 641 genome.wustl.edu 37 15 91304401 91304401 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000057.2 +1 reviewed p.L600F 0.035 201 0% 73 13.7% 7 57.1% benign(0.163) tolerated(0.69) neutral(0.017) NULL FURIN 5045 genome.wustl.edu 37 15 91420427 91420427 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002569.2 +1 reviewed p.Q188H 1.000 158 0% 217 27.6% 35 54.2% possibly_damaging(0.892) tolerated(0.54) neutral(0.359) HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53 FES 2242 genome.wustl.edu 37 15 91428409 91428409 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002005.3 +1 reviewed p.A45V 0.996 91 0% 70 31.4% 5 80% probably_damaging(0.96) deleterious(0) deleterious(0.848) HMMPfam_FCH,HMMSmart_SM00055 FES 2242 genome.wustl.edu 37 15 91428411 91428411 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002005.3 +1 reviewed p.G46* 0.069 95 0% 71 19.7% 5 0% - - - HMMPfam_FCH,HMMSmart_SM00055 FES 2242 genome.wustl.edu 37 15 91432628 91432628 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002005.3 +1 reviewed p.R254H 0.850 82 1.2% 76 22.4% 10 80% possibly_damaging(0.942) tolerated(0.11) deleterious(0.659) NULL FES 2242 genome.wustl.edu 37 15 91438728 91438728 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002005.3 +1 reviewed p.Q803 1.000 48 0% 57 31.6% 32 46.8% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) MAN2A2 4122 genome.wustl.edu 37 15 91455412 91455412 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006122.2 +1 validated p.A750V 0.001 63 0% 66 19.7% 18 66.6% benign(0) tolerated(0.53) neutral(0.007) superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C MAN2A2 4122 genome.wustl.edu 37 15 91455773 91455773 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006122.2 +1 validated p.S783N 1.000 182 0% 167 24% 26 57.6% benign(0.096) tolerated(0.25) neutral(0.044) superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C UNC45A 55898 genome.wustl.edu 37 15 91483617 91483617 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018671.3 +1 validated p.Q201* 1.000 354 0% 330 22.1% 25 8% - - - superfamily_ARM repeat LOC100131297 100131297 genome.wustl.edu 37 15 91575637 91575637 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343384.1 -1 model p.R11W 0.950 78 0% 54 20.4% 0 - - - - NULL MCTP2 55784 genome.wustl.edu 37 15 94841849 94841849 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018349.3 +1 validated p.D119Y 0.949 64 0% 36 27.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MCTP2 55784 genome.wustl.edu 37 15 94911015 94911015 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018349.3 +1 validated p.R495* 1.000 68 0% 43 27.9% 0 - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) MCTP2 55784 genome.wustl.edu 37 15 95022207 95022207 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018349.3 +1 validated p.E861* 0.981 94 0% 40 30% 6 33.3% - - - NULL ARRDC4 91947 genome.wustl.edu 37 15 98509222 98509222 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183376.2 +1 validated p.R158W 0.914 499 0% 453 16.8% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Arrestin_N,superfamily_E set domains FAM169B 283777 genome.wustl.edu 37 15 99023948 99023948 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182562.2 -1 validated p.R22I 0.965 363 0.3% 222 17.6% 0 - benign(0.104) tolerated(0.21) neutral(0.052) NULL SYNM 23336 genome.wustl.edu 37 15 99653921 99653921 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336292 +1 known e3+1 1.000 99 0% 111 20.7% 1 0% - - - - SYNM 23336 genome.wustl.edu 37 15 99670115 99670115 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336292 +1 known p.R516Q 0.000 194 0% 160 21.2% 0 - benign(0.027) tolerated(0.74) neutral(0.003) NULL SYNM 23336 genome.wustl.edu 37 15 99670118 99670118 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145728.2 +1 reviewed p.Q518* 0.000 201 0% 164 32.9% 0 - benign(0.013) tolerated(0.37) neutral(0.019) NULL SYNM 23336 genome.wustl.edu 37 15 99670320 99670320 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336292 +1 known p.Q584H 0.001 248 0% 172 22.7% 0 - benign(0.07) deleterious(0) neutral(0.450) NULL SYNM 23336 genome.wustl.edu 37 15 99670759 99670759 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336292 +1 known p.L731I 0.020 309 0% 198 13.1% 0 - probably_damaging(0.972) deleterious(0.02) deleterious(0.797) NULL SYNM 23336 genome.wustl.edu 37 15 99670984 99670984 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336292 +1 known p.Q806* 0.004 115 0% 113 16.8% 3 0% - - - NULL SYNM 23336 genome.wustl.edu 37 15 99671436 99671436 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000336292 +1 known p.E956D 1.000 105 0% 70 28.6% 0 - possibly_damaging(0.862) deleterious(0.04) deleterious(0.682) NULL ADAMTS17 170691 genome.wustl.edu 37 15 100657171 100657171 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139057.2 -1 reviewed p.A590V 0.088 69 0% 53 32.1% 0 - benign(0.022) deleterious(0.01) neutral(0.407) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat CERS3 204219 genome.wustl.edu 37 15 101024826 101024826 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178842.3 -1 validated p.Q112H 1.000 244 0% 114 27.2% 0 - probably_damaging(0.986) deleterious(0.01) deleterious(0.840) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like ALDH1A3 220 genome.wustl.edu 37 15 101432769 101432769 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000693.2 +1 reviewed p.L134 1.000 549 0% 386 21% 1 0% - - - HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH LRRK1 79705 genome.wustl.edu 37 15 101593249 101593249 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024652.3 +1 validated p.R1271H 0.988 49 0% 68 30.9% 2 0% probably_damaging(0.998) tolerated(0.05) deleterious(0.820) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase LRRK1 79705 genome.wustl.edu 37 15 101606267 101606267 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024652.3 +1 validated p.C1875 0.000 93 0% 111 25.2% 0 - - - - NULL SELS 55829 genome.wustl.edu 37 15 101814874 101814874 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018445.4 -1 reviewed p.K111Q 0.942 498 0% 667 21.3% 121 32.2% probably_damaging(0.978) deleterious(0.01) deleterious(0.826) HMMPfam_Selenoprotein_S PCSK6 5046 genome.wustl.edu 37 15 101865123 101865123 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000331826 -1 known p.G769E 0.993 59 0% 56 26.8% 0 - probably_damaging(0.998) tolerated(0.1) deleterious(0.761) HMMSmart_SM00181,HMMSmart_SM00261,superfamily_Growth factor receptor domain TARSL2 123283 genome.wustl.edu 37 15 102244072 102244072 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152334.2 -1 validated p.K355R 1.000 323 0% 196 18.9% 0 - possibly_damaging(0.675) deleterious(0.01) deleterious(0.645) HMMPfam_tRNA_SAD,superfamily_ThrRS/AlaRS common domain RHBDF1 64285 genome.wustl.edu 37 16 111898 111898 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022450.3 -1 validated p.R369Q 1.000 26 0% 19 21.1% 6 33.3% probably_damaging(0.975) deleterious(0) deleterious(0.861) NULL NPRL3 8131 genome.wustl.edu 37 16 143288 143288 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399953 -1 known p.G320 1.000 185 0% 135 25.2% 77 42.8% - - - HMMPfam_UPF0171 NPRL3 8131 genome.wustl.edu 37 16 188249 188249 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399953 -1 known p.S6 1.000 40 0% 26 26.9% 6 16.6% - - - HMMPfam_UPF0171 LUC7L 55692 genome.wustl.edu 37 16 242939 242939 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201412.1 -1 validated p.R255C 0.997 565 0% 439 12.8% 53 7.5% unknown(0) tolerated(0.16) - HMMPfam_LUC7 ITFG3 83986 genome.wustl.edu 37 16 310059 310059 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000421000 +1 known p.S88L 0.000 42 0% 50 22% 65 44.6% - - - NULL MRPL28 10573 genome.wustl.edu 37 16 418578 418578 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006428.3 -1 reviewed p.L167 0.989 34 0% 41 29.3% 190 26.3% - - - superfamily_P53_like_DNA_bnd TMEM8A 58986 genome.wustl.edu 37 16 425225 425225 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021259.2 -1 validated p.S449 0.000 122 0% 142 18.3% 109 45.8% - - - NULL DECR2 26063 genome.wustl.edu 37 16 457485 457485 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020664.3 +1 validated p.R88* 0.966 101 0% 138 32.6% 17 29.4% - - - HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains DECR2 26063 genome.wustl.edu 37 16 461488 461488 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020664.3 +1 validated p.A263 0.000 94 0% 139 18% 26 19.2% - - - superfamily_NAD(P)-binding Rossmann-fold domains RAB11FIP3 9727 genome.wustl.edu 37 16 476717 476717 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014700.3 +1 validated p.E237D 0.995 13 0% 18 27.8% 13 46.1% benign(0.188) tolerated(0.33) neutral(0.042) superfamily_SSF47473 C16orf11 146325 genome.wustl.edu 37 16 615176 615176 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145270.1 +1 predicted p.G529W 0.093 16 0% 16 43.8% 1 0% possibly_damaging(0.942) deleterious(0.02) deleterious(0.770) NULL RAB40C 57799 genome.wustl.edu 37 16 677435 677435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021168.4 +1 validated p.S220N 1.000 148 0% 170 24.1% 33 48.4% possibly_damaging(0.892) deleterious(0) deleterious(0.796) HMMPfam_SOCS_box,HMMSmart_SM00253,HMMSmart_SM00176 WFIKKN1 117166 genome.wustl.edu 37 16 681397 681397 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053284.2 +1 reviewed p.T48 1.000 36 0% 32 21.9% 0 - - - - HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP FAM195A 84331 genome.wustl.edu 37 16 698181 698181 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138418.2 +1 predicted p.S158 1.000 68 0% 86 23.3% 132 43.9% - - - NULL WDR90 197335 genome.wustl.edu 37 16 716974 716974 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145294.4 +1 provisional p.A1692T 0.995 398 0% 532 21.6% 48 41.6% possibly_damaging(0.902) deleterious(0.03) deleterious(0.722) HMMSmart_SM00320,superfamily_WD40 repeat-like WDR90 197335 genome.wustl.edu 37 16 717435 717435 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145294.4 +1 provisional p.C1698Y 0.992 44 0% 61 18% 57 43.8% possibly_damaging(0.718) tolerated(0.15) deleterious(0.501) HMMSmart_SM00320,superfamily_WD40 repeat-like RHOT2 89941 genome.wustl.edu 37 16 720488 720488 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138769.1 +1 provisional p.E157D 1.000 75 1.3% 95 18.9% 41 36.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases WDR24 84219 genome.wustl.edu 37 16 735053 735053 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032259.2 -1 provisional p.L715M 0.999 38 0% 44 27.3% 46 26% benign(0.424) tolerated(1) neutral(0.138) NULL WDR24 84219 genome.wustl.edu 37 16 736079 736079 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032259.2 -1 provisional p.P480 0.001 58 0% 71 26.8% 24 33.3% - - - NULL NARFL 64428 genome.wustl.edu 37 16 784829 784829 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022493.1 -1 provisional p.S161I 1.000 57 0% 71 11.3% 30 6.6% unknown(0) tolerated(0.21) - HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase NARFL 64428 genome.wustl.edu 37 16 787323 787323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022493.1 -1 provisional p.G57R 0.100 74 0% 115 22.6% 20 50% benign(0.034) tolerated(0.11) neutral(0.274) NULL MSLN 10232 genome.wustl.edu 37 16 816099 816099 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013404.4 +1 reviewed p.D312 0.004 86 0% 106 27.4% 509 51% - - - HMMPfam_Mesothelin MSLNL 401827 genome.wustl.edu 37 16 830277 830277 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025190.1 -1 provisional p.S242T 0.024 111 0% 100 27% 0 - unknown(0) - - NULL CHTF18 63922 genome.wustl.edu 37 16 842501 842501 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022092.2 +1 validated p.Q463H 0.009 24 0.000 9 0.556 11 27.2% benign(0.003) tolerated(0.2) neutral(0.049) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases CHTF18 63922 genome.wustl.edu 37 16 844143 844143 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022092.2 +1 validated p.R631Q 1.000 18 0% 46 21.7% 33 57.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CHTF18 63922 genome.wustl.edu 37 16 846805 846805 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022092.2 +1 validated p.E849K 1.000 22 0% 50 22% 37 48.6% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL CHTF18 63922 genome.wustl.edu 37 16 847886 847886 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022092.2 +1 validated p.A947S 0.998 43 0% 48 27.1% 46 50% probably_damaging(0.975) tolerated(0.06) deleterious(0.740) NULL GNG13 51764 genome.wustl.edu 37 16 848769 848769 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016541.2 -1 validated p.L52 1.000 176 0% 199 20.1% 0 - - - - HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like LMF1 64788 genome.wustl.edu 37 16 961006 961006 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022773.2 -1 reviewed p.L196 0.924 94 0% 118 26.3% 22 36.3% - - - HMMPfam_DUF1222 LMF1 64788 genome.wustl.edu 37 16 1004389 1004389 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022773.2 -1 reviewed p.L157 1.000 95 0% 83 22.9% 6 16.6% - - - NULL CACNA1H 8912 genome.wustl.edu 37 16 1260918 1260918 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021098.2 +1 reviewed p.K1390N 1.000 69 0% 73 26% 2 0% possibly_damaging(0.614) tolerated(0.05) deleterious(0.558) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1H 8912 genome.wustl.edu 37 16 1269007 1269007 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021098.2 +1 reviewed p.S1975 0.033 22 0% 31 16.1% 2 0% - - - NULL TPSG1 25823 genome.wustl.edu 37 16 1272011 1272011 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012467.3 -1 reviewed p.R248H 0.000 34 0% 27 14.8% 0 - probably_damaging(0.999) tolerated(0.16) deleterious(0.550) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases BAIAP3 8938 genome.wustl.edu 37 16 1384734 1384734 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003933.3 +1 reviewed p.F24 0.001 19 0% 31 41.9% 0 - - - - NULL BAIAP3 8938 genome.wustl.edu 37 16 1398406 1398406 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003933.3 +1 reviewed p.G1163C 1.000 45 0% 45 17.8% 3 0% probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL C16orf42 115939 genome.wustl.edu 37 16 1399449 1399449 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001410.2 -1 validated p.Q310* 0.255 184 0% 203 13.3% 228 21% - - - NULL CLCN7 1186 genome.wustl.edu 37 16 1510487 1510487 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001287.4 -1 reviewed p.L176 1.000 74 0% 106 22.6% 23 47.8% - - - superfamily_Cl-channel_core CLCN7 1186 genome.wustl.edu 37 16 1510939 1510939 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001287.4 -1 reviewed p.T121M 0.913 56 0% 44 18.2% 21 4.7% possibly_damaging(0.66) tolerated(0.14) deleterious(0.483) superfamily_Cl-channel_core TELO2 9894 genome.wustl.edu 37 16 1551689 1551689 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016111.3 +1 reviewed p.E463* 0.048 119 0% 147 32% 18 44.4% - - - NULL IFT140 9742 genome.wustl.edu 37 16 1570313 1570313 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014714.3 -1 validated p.T1231M 0.998 128 0% 137 22.6% 34 41.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_TPR-like IFT140 9742 genome.wustl.edu 37 16 1573848 1573848 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014714.3 -1 validated p.A1084V 1.000 95 0% 81 33.3% 27 29.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_TPR-like TMEM204 79652 genome.wustl.edu 37 16 1605000 1605000 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024600.4 +1 provisional p.D218 1.000 58 0% 52 11.5% 29 0% - - - NULL HN1L 90861 genome.wustl.edu 37 16 1741891 1741891 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144570.2 +1 validated p.R81* 0.164 140 0% 193 18.1% 55 3.6% - - - NULL MAPK8IP3 23162 genome.wustl.edu 37 16 1779187 1779187 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015133.3 +1 reviewed p.A163V 1.000 217 0% 226 19.5% 4 25% possibly_damaging(0.764) tolerated(0.17) neutral(0.342) HMMPfam_Jnk-SapK_ap_N MAPK8IP3 23162 genome.wustl.edu 37 16 1798673 1798673 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015133.3 +1 reviewed p.A389T 0.999 133 0% 145 13.1% 5 0% benign(0.039) tolerated(0.08) neutral(0.302) NULL MAPK8IP3 23162 genome.wustl.edu 37 16 1816243 1816243 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015133.3 +1 reviewed p.N883 0.947 29 0% 39 15.4% 5 60% - - - NULL EME2 197342 genome.wustl.edu 37 16 1826099 1826099 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010865.1 +1 provisional p.R399C 0.698 4 0.000 12 0.500 3 66.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL NUBP2 10101 genome.wustl.edu 37 16 1837791 1837791 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012225.2 +1 validated p.P150S 0.010 21 0% 29 27.6% 138 35.5% benign(0.001) tolerated(0.79) neutral(0.001) HMMPfam_ParA,superfamily_SSF52540 NUBP2 10101 genome.wustl.edu 37 16 1837815 1837815 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012225.2 +1 validated p.V158M 0.029 30 0% 30 23.3% 124 41.1% benign(0.123) tolerated(0.13) neutral(0.263) HMMPfam_ParA,superfamily_SSF52540 TBL3 10607 genome.wustl.edu 37 16 2025077 2025077 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006453.2 +1 reviewed p.A205T 0.001 31 0% 39 23.1% 66 50% benign(0.001) tolerated(0.48) neutral(0.011) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 TBL3 10607 genome.wustl.edu 37 16 2027399 2027399 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006453.2 +1 reviewed p.V572M 1.000 63 0% 99 20.2% 135 38.5% possibly_damaging(0.808) deleterious(0.01) deleterious(0.710) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 ZNF598 90850 genome.wustl.edu 37 16 2048813 2048813 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431526 -1 known p.E751K 0.997 112 0% 107 22.4% 20 40% probably_damaging(0.987) tolerated(0.18) deleterious(0.492) NULL ZNF598 90850 genome.wustl.edu 37 16 2050393 2050393 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431526 -1 known p.G431C 0.107 108 0% 127 22% 30 50% possibly_damaging(0.573) deleterious(0.05) deleterious(0.542) NULL ZNF598 90850 genome.wustl.edu 37 16 2052284 2052284 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431526 -1 known p.S273N 1.000 20 0% 29 24.1% 25 36% benign(0.078) tolerated(0.53) neutral(0.013) NULL SLC9A3R2 9351 genome.wustl.edu 37 16 2079703 2079703 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130012.1 +1 validated p.L112I 0.880 46 0% 41 17.1% 75 21.3% benign(0) tolerated(0.27) neutral(0.034) superfamily_PDZ domain-like TSC2 7249 genome.wustl.edu 37 16 2111888 2111888 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000548.3 +1 reviewed p.E379G 1.000 166 0% 169 28.4% 10 40% possibly_damaging(0.948) tolerated(0.15) deleterious(0.632) superfamily_ARM repeat PKD1 5310 genome.wustl.edu 37 16 2142505 2142505 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.L3749M 0.956 23 0% 33 33.3% 12 25% probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMPfam_PKD_channel PKD1 5310 genome.wustl.edu 37 16 2150071 2150071 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.S3238 0.979 24 0% 27 25.9% 10 20% - - - NULL PKD1 5310 genome.wustl.edu 37 16 2150455 2150455 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.I3170 0.742 123 0% 136 25.7% 4 25% - - - HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain) PKD1 5310 genome.wustl.edu 37 16 2158298 2158298 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.D2290 1.000 27 0% 35 31.4% 3 33.3% - - - HMMPfam_REJ PKD1 5310 genome.wustl.edu 37 16 2158614 2158614 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.Y2185C 1.000 17 0% 11 45.5% 2 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_REJ PKD1 5310 genome.wustl.edu 37 16 2160621 2160621 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.A1516V 0.060 42 0% 48 31.2% 3 66.6% benign(0.008) tolerated(0.27) neutral(0.034) HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain PKD1 5310 genome.wustl.edu 37 16 2164302 2164302 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009944.2 -1 reviewed p.V908M 0.000 37 0% 47 21.3% 1 100% benign(0.007) tolerated(0.16) neutral(0.059) NULL TRAF7 84231 genome.wustl.edu 37 16 2225514 2225514 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032271.2 +1 validated p.V506A 1.000 78 0% 118 15.3% 109 14.6% possibly_damaging(0.643) tolerated(0.55) neutral(0.233) superfamily_WD40 repeat-like CASKIN1 57524 genome.wustl.edu 37 16 2234976 2234976 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020764.3 -1 validated p.A434T 0.001 56 0% 59 37.3% 0 - benign(0.104) tolerated(0.06) neutral(0.331) NULL CASKIN1 57524 genome.wustl.edu 37 16 2235360 2235360 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020764.3 -1 validated p.S366 0.378 52 0% 78 20.5% 0 - - - - superfamily_SH3 E4F1 1877 genome.wustl.edu 37 16 2284212 2284212 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004424.3 +1 reviewed p.F472 1.000 17 0% 24 33.3% 43 48.8% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ECI1 1632 genome.wustl.edu 37 16 2293392 2293392 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001919.3 -1 reviewed p.R164S 0.999 57 0% 55 34.5% 440 45.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ECH,superfamily_ClpP/crotonase ECI1 1632 genome.wustl.edu 37 16 2294455 2294455 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001919.3 -1 reviewed p.L131 1.000 36 0% 39 25.6% 293 46.4% - - - HMMPfam_ECH,superfamily_ClpP/crotonase RNPS1 10921 genome.wustl.edu 37 16 2314307 2314307 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006711.2 -1 reviewed p.D33Y 1.000 482 0% 527 25.2% 145 45.5% unknown(0) deleterious(0) - NULL ABCA3 21 genome.wustl.edu 37 16 2338040 2338040 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001089.2 -1 reviewed p.P997 0.016 39 0% 45 37.8% 7 57.1% - - - NULL TBC1D24 57465 genome.wustl.edu 37 16 2547077 2547077 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020705.1 +1 provisional p.A310T 0.992 26 0% 35 28.6% 11 54.5% possibly_damaging(0.909) tolerated(0.26) neutral(0.396) NULL TBC1D24 57465 genome.wustl.edu 37 16 2548380 2548380 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020705.1 +1 provisional p.H369 0.185 76 0% 87 19.5% 8 50% - - - HMMPfam_TLD,HMMSmart_TLDc PRSS27 83886 genome.wustl.edu 37 16 2763673 2763673 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031948.3 -1 validated p.Q179* 1.000 364 0% 373 31.4% 4 25% - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys SRRM2 23524 genome.wustl.edu 37 16 2812657 2812657 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016333.3 +1 validated p.R710C 0.941 141 0% 84 15.5% 21 42.8% unknown(0) - - NULL SRRM2 23524 genome.wustl.edu 37 16 2812676 2812676 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016333.3 +1 validated p.R716I 1.000 153 0% 93 14% 24 16.6% unknown(0) - - NULL SRRM2 23524 genome.wustl.edu 37 16 2816494 2816494 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016333.3 +1 validated p.V1989I 0.771 88 0% 87 16.1% 102 36.2% unknown(0) - - NULL SRRM2 23524 genome.wustl.edu 37 16 2817541 2817541 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016333.3 +1 validated p.L2338M 0.998 81 0% 106 18.9% 157 33.7% probably_damaging(0.998) - - NULL SRRM2 23524 genome.wustl.edu 37 16 2819124 2819124 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016333.3 +1 validated p.S2620 0.413 282 0% 371 19.4% 204 44.1% - - - NULL PRSS21 10942 genome.wustl.edu 37 16 2871427 2871427 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006799.2 +1 reviewed p.V256M 0.994 133 0% 153 17.6% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases MEFV 4210 genome.wustl.edu 37 16 3304288 3304288 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000243.2 -1 reviewed p.L260 0.003 176 0% 262 23.7% 0 - - - - NULL ZNF174 7727 genome.wustl.edu 37 16 3458428 3458428 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003450.2 +1 validated p.Q245* 0.996 101 0% 66 16.7% 11 27.2% - - - NULL NAA60 79903 genome.wustl.edu 37 16 3533571 3533571 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083600.1 +1 validated p.N182 0.461 353 0% 331 26.9% 55 43.6% - - - superfamily_Acyl_CoA_acyltransferase CLUAP1 23059 genome.wustl.edu 37 16 3586221 3586221 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015041.1 +1 provisional p.R398* 0.004 311 0% 170 12.9% 77 28.5% - - - NULL NLRC3 197358 genome.wustl.edu 37 16 3614571 3614571 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178844.2 -1 validated p.A123T 0.000 5 0.000 7 0.571 1 0% benign(0) tolerated(0.73) neutral(0.002) NULL SLX4 84464 genome.wustl.edu 37 16 3658509 3658509 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032444.2 -1 provisional p.L153I 0.000 322 0% 431 23.9% 2 50% probably_damaging(0.984) - - NULL CREBBP 1387 genome.wustl.edu 37 16 3778099 3778099 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.Q2317K 1.000 142 0% 173 23.7% 49 10.2% unknown(0) deleterious(0.01) - NULL CREBBP 1387 genome.wustl.edu 37 16 3778624 3778624 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.L2142M 0.994 113 0% 51 17.6% 17 35.2% benign(0.001) tolerated(0.77) neutral(0.001) NULL CREBBP 1387 genome.wustl.edu 37 16 3781241 3781241 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.N1708 0.780 44 0% 69 23.2% 20 40% - - - HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1 CREBBP 1387 genome.wustl.edu 37 16 3789608 3789608 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.Y1417* 0.102 173 0% 153 15% 13 23% - - - HMMPfam_DUF906 CREBBP 1387 genome.wustl.edu 37 16 3807984 3807984 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.G1145 1.000 192 0% 156 30.1% 6 16.6% - - - HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1 CREBBP 1387 genome.wustl.edu 37 16 3820878 3820878 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.P858L 1.000 242 0% 132 12.1% 11 27.2% probably_damaging(0.999) tolerated(0.46) deleterious(0.502) NULL CREBBP 1387 genome.wustl.edu 37 16 3900364 3900364 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004380.2 -1 reviewed p.T244 0.228 131 0% 97 21.6% 5 80% - - - NULL SRL 6345 genome.wustl.edu 37 16 4242595 4242595 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098814.1 -1 validated p.E327D 1.000 224 0% 154 22.7% 0 - probably_damaging(0.983) tolerated(0.43) neutral(0.443) superfamily_SSF52540 SRL 6345 genome.wustl.edu 37 16 4242609 4242609 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098814.1 -1 validated p.E323K 1.000 232 0% 168 22% 0 - probably_damaging(0.994) tolerated(0.15) deleterious(0.693) superfamily_SSF52540 SRL 6345 genome.wustl.edu 37 16 4292027 4292027 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098814.1 -1 validated p.L14 0.976 69 0% 49 20.4% 0 - - - - NULL CORO7 79585 genome.wustl.edu 37 16 4411087 4411087 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024535.3 -1 validated e19-1 1.000 124 0% 181 24.9% 2 50% - - - - VASN 114990 genome.wustl.edu 37 16 4432888 4432888 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138440.2 +1 validated p.K670 0.812 18 0% 20 25% 123 39% - - - NULL DNAJA3 9093 genome.wustl.edu 37 16 4492295 4492295 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005147.4 +1 validated p.Q219H 0.918 191 0.5% 104 17.3% 55 36.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL NUDT16L1 84309 genome.wustl.edu 37 16 4745048 4745048 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032349.2 +1 provisional p.T168 0.144 59 0% 76 11.8% 57 31.5% - - - NULL ANKS3 124401 genome.wustl.edu 37 16 4777133 4777133 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133450.2 -1 provisional p.P72 0.876 82 0% 73 20.5% 9 22.2% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK C16orf71 146562 genome.wustl.edu 37 16 4790427 4790427 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139170.2 +1 validated p.E184* 0.020 59 0% 43 18.6% 0 - - - - NULL C16orf71 146562 genome.wustl.edu 37 16 4790495 4790495 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139170.2 +1 validated p.M206I 1.000 69 0% 59 22% 3 100% possibly_damaging(0.444) deleterious(0) deleterious(0.590) NULL ZNF500 26048 genome.wustl.edu 37 16 4810568 4810568 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021646.1 -1 validated p.V229M 0.973 110 0% 118 16.1% 3 0% benign(0.01) tolerated(1) neutral(0.001) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box GLYR1 84656 genome.wustl.edu 37 16 4864541 4864541 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032569.3 -1 validated p.K338N 1.000 103 0% 64 28.1% 42 35.7% possibly_damaging(0.773) tolerated(0.06) deleterious(0.610) HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains UBN1 29855 genome.wustl.edu 37 16 4920314 4920314 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079514.1 +1 validated p.R428H 1.000 155 0% 110 24.5% 7 28.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PPL 5493 genome.wustl.edu 37 16 4933518 4933518 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002705.4 -1 reviewed p.R1713M 1.000 163 0% 203 24.6% 39 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00250,superfamily_Plakin repeat PPL 5493 genome.wustl.edu 37 16 4939015 4939015 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002705.4 -1 reviewed p.I787 0.907 356 0% 423 21.5% 18 50% - - - HMMSmart_SM00150,superfamily_Spectrin repeat PPL 5493 genome.wustl.edu 37 16 4940288 4940288 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002705.4 -1 reviewed p.R737H 0.001 208 0% 195 23.6% 22 50% benign(0.002) deleterious(0.03) neutral(0.364) HMMSmart_SM00150,superfamily_Spectrin repeat PPL 5493 genome.wustl.edu 37 16 4945323 4945323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002705.4 -1 reviewed p.R394H 1.000 48 2.1% 49 34.7% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00150,superfamily_Spectrin repeat PPL 5493 genome.wustl.edu 37 16 4960860 4960860 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002705.4 -1 reviewed p.K51N 1.000 131 0% 111 26.1% 9 44.4% benign(0.111) tolerated(0.1) neutral(0.295) NULL C16orf89 146556 genome.wustl.edu 37 16 5094387 5094387 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098514.1 -1 validated p.P388T 0.000 159 0% 120 14.2% 0 - unknown(0) tolerated(0.08) - NULL C16orf89 146556 genome.wustl.edu 37 16 5094426 5094426 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098514.1 -1 validated p.L375I 0.998 82 0% 71 9.9% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL C16orf89 146556 genome.wustl.edu 37 16 5105260 5105260 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152459.3 -1 validated p.C323* 1.000 61 0% 60 15% 1 100% - - - NULL RBFOX1 54715 genome.wustl.edu 37 16 7637259 7637259 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145891.2 +1 reviewed p.K162T 1.000 264 0% 72 18.1% 0 - benign(0.104) tolerated(0.12) neutral(0.269) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 ENSG00000078328 0 genome.wustl.edu 37 16 7759118 7759118 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000355637 +1 known p.T391M 1.000 345 0% 180 22.8% 0 - unknown(0) deleterious(0) - NULL GRIN2A 2903 genome.wustl.edu 37 16 9857785 9857785 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000833.3 -1 reviewed p.R1206* 0.961 384 0.3% 115 16.5% 0 - - - - HMMPfam_NMDAR2_C GRIN2A 2903 genome.wustl.edu 37 16 9916222 9916222 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000833.3 -1 reviewed p.S689 1.000 457 0% 89 12.4% 0 - - - - HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II CIITA 4261 genome.wustl.edu 37 16 11001575 11001575 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000246.3 +1 reviewed p.R742 0.998 81 0% 72 25% 27 22.2% - - - NULL CLEC16A 23274 genome.wustl.edu 37 16 11217663 11217663 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015226.2 +1 validated p.A778V 0.914 204 0% 135 17% 11 36.3% benign(0.183) tolerated(0.16) neutral(0.076) NULL CLEC16A 23274 genome.wustl.edu 37 16 11260294 11260294 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000261657 +1 known p.L89I 0.962 95 0% 87 25.3% 8 12.5% - - - NULL ZC3H7A 29066 genome.wustl.edu 37 16 11858937 11858937 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014153.2 -1 provisional p.V598I 0.997 307 0% 163 22.7% 15 40% benign(0.004) tolerated(0.25) neutral(0.037) NULL ZC3H7A 29066 genome.wustl.edu 37 16 11859352 11859352 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014153.2 -1 provisional p.L571P 1.000 89 0% 39 23.1% 10 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RSL1D1 26156 genome.wustl.edu 37 16 11931872 11931872 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015659.2 -1 validated p.T415 0.968 431 0% 350 17.7% 220 48.1% - - - NULL SNX29 92017 genome.wustl.edu 37 16 12140288 12140288 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032167.2 +1 validated p.S159I 1.000 792 0% 586 23.4% 1 0% probably_damaging(0.993) deleterious(0.05) deleterious(0.795) HMMPfam_RUN,HMMSmart_SM00593 PARN 5073 genome.wustl.edu 37 16 14530583 14530583 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002582.2 -1 reviewed p.D637 1.000 285 0% 112 16.1% 25 16% - - - NULL BFAR 51283 genome.wustl.edu 37 16 14755867 14755867 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016561.2 +1 validated p.T301I 1.000 418 0% 138 25.4% 43 30.2% benign(0.037) deleterious(0) neutral(0.447) NULL BFAR 51283 genome.wustl.edu 37 16 14761499 14761499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016561.2 +1 validated p.P390S 1.000 240 0% 84 27.4% 36 44.4% possibly_damaging(0.794) deleterious(0) deleterious(0.742) NULL NOMO1 23420 genome.wustl.edu 37 16 14956953 14956953 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014287.3 +1 reviewed p.S435Y 0.017 935 0% 307 11.1% 21 0% benign(0.313) tolerated(0.08) neutral(0.397) NULL NOMO1 23420 genome.wustl.edu 37 16 14968980 14968980 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014287.3 +1 reviewed p.I714 0.960 741 0.1% 192 13% 43 11.6% - - - NULL NTAN1 123803 genome.wustl.edu 37 16 15131982 15131982 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173474.2 -1 provisional p.S280F 1.000 295 0% 242 25.6% 26 23% benign(0) tolerated(0.42) neutral(0.014) NULL RRN3 54700 genome.wustl.edu 37 16 15157138 15157138 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018427.3 -1 validated p.S570L 0.994 256 0% 275 21.5% 29 48.2% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_RRN3 LOC100287779 100287779 genome.wustl.edu 37 16 15224239 15224239 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343450.1 +1 model p.G55R 1.000 65 0% 43 20.9% 6 16.6% - - - NULL KIAA0430 9665 genome.wustl.edu 37 16 15728715 15728715 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014647.3 -1 validated p.P302H 1.000 875 0% 621 22.4% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL NDE1 54820 genome.wustl.edu 37 16 15785144 15785144 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143979.1 +1 reviewed p.S223G 0.027 78 0% 26 26.9% 33 42.4% benign(0) tolerated(0.26) neutral(0.034) HMMPfam_NUDE_C MYH11 4629 genome.wustl.edu 37 16 15814155 15814155 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040114.1 -1 reviewed p.E1609D 1.000 227 0% 184 19.6% 46 0% probably_damaging(0.979) deleterious(0.01) deleterious(0.828) HMMPfam_Myosin_tail_1 MYH11 4629 genome.wustl.edu 37 16 15820885 15820885 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040114.1 -1 reviewed p.K1233N 1.000 153 0% 137 20.4% 30 3.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Myosin_tail_1 MYH11 4629 genome.wustl.edu 37 16 15847352 15847352 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040114.1 -1 reviewed p.A595V 0.997 342 0.3% 229 22.7% 32 0% benign(0.094) tolerated(0.06) neutral(0.330) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYH11 4629 genome.wustl.edu 37 16 15931817 15931817 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040114.1 -1 reviewed p.E98G 1.000 588 0% 236 12.3% 14 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 FOPNL 123811 genome.wustl.edu 37 16 15973712 15973712 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144600.2 -1 provisional p.Q87R 0.966 237 0% 181 24.3% 26 42.3% benign(0.013) tolerated(0.6) neutral(0.005) NULL ABCC1 4363 genome.wustl.edu 37 16 16139844 16139844 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004996.3 +1 reviewed p.A398T 1.000 288 0.3% 87 21.8% 14 42.8% probably_damaging(0.978) deleterious(0.01) deleterious(0.826) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC6 368 genome.wustl.edu 37 16 16308295 16308295 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001171.5 -1 reviewed p.S162 0.001 167 0% 99 24.2% 0 - - - - NULL XYLT1 64131 genome.wustl.edu 37 16 17353134 17353134 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022166.3 -1 reviewed p.F208 0.786 181 0% 87 12.6% 0 - - - - NULL XYLT1 64131 genome.wustl.edu 37 16 17353261 17353261 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022166.3 -1 reviewed p.S166N 1.000 433 0% 201 21.4% 0 - probably_damaging(0.99) deleterious(0.02) deleterious(0.825) NULL ABCC6P1 653190 genome.wustl.edu 37 16 18602474 18602474 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_003569.1 +1 provisional NULL 0.001 192 0% 100 12% 0 - benign(0.368) tolerated(0.82) neutral(0.118) - ARL6IP1 23204 genome.wustl.edu 37 16 18805987 18805987 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015161.1 -1 provisional p.V143I 0.963 249 0% 223 14.8% 216 46.7% benign(0) tolerated(0.96) - HMMPfam_Reticulon ARL6IP1 23204 genome.wustl.edu 37 16 18806804 18806804 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015161.1 -1 provisional p.K130N 1.000 326 0% 347 23.1% 197 46.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Reticulon SMG1 23049 genome.wustl.edu 37 16 18823365 18823365 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015092.4 -1 reviewed p.T3569I 1.000 385 0% 266 22.6% 14 21.4% benign(0.057) deleterious(0.02) neutral(0.387) NULL SMG1 23049 genome.wustl.edu 37 16 18861670 18861670 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015092.4 -1 reviewed p.S1724 0.993 314 0% 160 20% 2 50% - - - superfamily_ARM repeat SMG1 23049 genome.wustl.edu 37 16 18893661 18893661 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015092.4 -1 reviewed e10-1 1.000 61 0% 28 17.9% 0 - - - - - TMC7 79905 genome.wustl.edu 37 16 19070781 19070781 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024847.3 +1 validated p.R691W 1.000 302 0% 164 14% 3 33.3% probably_damaging(0.977) deleterious(0) deleterious(0.863) NULL COQ7 10229 genome.wustl.edu 37 16 19088643 19088643 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016138.3 +1 reviewed p.R175W 1.000 439 0% 369 21.7% 27 51.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_COQ7,superfamily_Ferritin-like TMC5 79838 genome.wustl.edu 37 16 19498340 19498340 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105248.1 +1 validated p.N813H 1.000 476 0% 171 24.6% 33 63.6% possibly_damaging(0.795) deleterious(0.01) deleterious(0.704) HMMPfam_TMC CCP110 9738 genome.wustl.edu 37 16 19543830 19543830 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014711.4 +1 validated p.L78 0.996 365 0% 213 21.1% 3 66.6% - - - NULL CCP110 9738 genome.wustl.edu 37 16 19548609 19548609 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014711.4 +1 validated p.E540K 0.999 215 0% 104 19.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL C16orf62 57020 genome.wustl.edu 37 16 19580865 19580865 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020314.4 +1 predicted p.L79 0.997 57 0% 37 24.3% 8 25% - - - NULL C16orf62 57020 genome.wustl.edu 37 16 19592878 19592878 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020314.4 +1 predicted p.Q181P 1.000 271 0% 113 14.2% 13 15.3% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL C16orf62 57020 genome.wustl.edu 37 16 19627504 19627504 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020314.4 +1 predicted p.T364 0.811 235 0% 131 23.7% 9 44.4% - - - NULL C16orf62 57020 genome.wustl.edu 37 16 19628009 19628009 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020314.4 +1 predicted p.I368S 1.000 356 0.3% 154 19.5% 9 33.3% possibly_damaging(0.703) deleterious(0) deleterious(0.697) NULL GPRC5B 51704 genome.wustl.edu 37 16 19883174 19883174 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016235.1 -1 reviewed p.E332* 1.000 83 0% 94 20.2% 8 0% - - - NULL GPRC5B 51704 genome.wustl.edu 37 16 19883399 19883399 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016235.1 -1 reviewed p.G257S 1.000 160 0% 196 28.6% 4 50% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_7tm_3 GP2 2813 genome.wustl.edu 37 16 20329677 20329677 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007240.1 -1 validated p.T364 0.000 322 0% 95 20% 0 - - - - HMMPfam_Zona_pellucida,HMMSmart_SM00241 ACSM5 54988 genome.wustl.edu 37 16 20451737 20451737 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017888.2 +1 validated p.E576 1.000 219 0% 75 14.7% 1 0% - - - superfamily_Acetyl-CoA synthetase-like ACSM2A 123876 genome.wustl.edu 37 16 20480841 20480841 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010845.2 +1 validated p.I132 0.960 611 0% 277 20.9% 0 - - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ACSM2B 348158 genome.wustl.edu 37 16 20557739 20557739 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105069.1 -1 validated p.A386T 0.010 834 0% 405 18.3% 0 - benign(0.044) tolerated(0.06) neutral(0.325) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ACSM1 116285 genome.wustl.edu 37 16 20696643 20696643 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052956.2 -1 validated p.G92E 0.000 377 0.3% 158 17.7% 1 0% possibly_damaging(0.688) deleterious(0.03) deleterious(0.611) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like THUMPD1 55623 genome.wustl.edu 37 16 20748359 20748359 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017736.3 -1 validated p.E302V 0.564 910 0% 762 19.3% 11 54.5% benign(0.039) deleterious(0.04) neutral(0.351) NULL LYRM1 57149 genome.wustl.edu 37 16 20927016 20927016 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128301.1 +1 validated p.L47 0.753 160 0% 77 14.3% 29 37.9% - - - HMMPfam_Complex1_LYR DNAH3 55567 genome.wustl.edu 37 16 20955961 20955961 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017539.1 -1 provisional p.L3790I 0.648 322 0.3% 77 19.5% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Dynein_heavy DNAH3 55567 genome.wustl.edu 37 16 20994199 20994199 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017539.1 -1 provisional p.P2568Q 1.000 175 0.6% 161 22.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH3 55567 genome.wustl.edu 37 16 20996802 20996802 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017539.1 -1 provisional p.R2421H 1.000 148 0.7% 135 17.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH3 55567 genome.wustl.edu 37 16 20998728 20998728 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017539.1 -1 provisional p.R2309W 1.000 327 0% 381 15.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH3 55567 genome.wustl.edu 37 16 20999364 20999364 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017539.1 -1 provisional p.I2209V 1.000 404 0% 435 20.2% 0 - benign(0) tolerated(1) - HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH3 55567 genome.wustl.edu 37 16 21151972 21151972 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017539.1 -1 provisional p.S194Y 0.001 473 0% 182 18.7% 0 - benign(0.062) deleterious(0.01) neutral(0.410) NULL TMEM159 57146 genome.wustl.edu 37 16 21181817 21181817 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020422.4 +1 validated p.A52 0.554 902 0% 489 25.4% 16 31.2% - - - NULL TMEM159 57146 genome.wustl.edu 37 16 21185363 21185363 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020422.4 +1 validated p.L100I 0.546 457 0% 216 23.1% 19 31.5% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL ZP2 7783 genome.wustl.edu 37 16 21208892 21208892 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003460.1 -1 reviewed p.A716D 0.000 241 0% 62 24.2% 0 - possibly_damaging(0.736) deleterious(0) deleterious(0.714) NULL ZP2 7783 genome.wustl.edu 37 16 21212784 21212784 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003460.1 -1 reviewed p.D534N 0.701 392 0% 123 23.6% 0 - benign(0.001) tolerated(1) - HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1 ZP2 7783 genome.wustl.edu 37 16 21215425 21215425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003460.1 -1 reviewed p.H300Y 0.001 391 0% 111 19.8% 0 - benign(0.009) deleterious(0.01) neutral(0.406) NULL CRYM 1428 genome.wustl.edu 37 16 21289496 21289496 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001888.3 -1 reviewed p.P26H 0.995 49 0% 69 17.4% 1 0% possibly_damaging(0.49) tolerated(0.47) neutral(0.174) HMMPfam_OCD_Mu_crystall,superfamily_NAD(P)-binding Rossmann-fold domains OTOA 146183 genome.wustl.edu 37 16 21728344 21728344 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144672.3 +1 reviewed p.K535N 0.929 292 0.3% 89 20.2% 0 - probably_damaging(0.97) deleterious(0.02) deleterious(0.795) NULL OTOA 146183 genome.wustl.edu 37 16 21739682 21739682 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144672.3 +1 reviewed p.L713I 0.590 105 0% 38 23.7% 0 - probably_damaging(0.976) tolerated(0.23) neutral(0.459) NULL OTOA 146183 genome.wustl.edu 37 16 21742163 21742163 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144672.3 +1 reviewed p.P738H 0.960 432 0.2% 132 24.2% 0 - probably_damaging(0.984) deleterious(0.01) deleterious(0.836) NULL UQCRC2 7385 genome.wustl.edu 37 16 21994466 21994466 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003366.2 +1 validated p.H446Y 0.995 299 0.3% 124 25.8% 365 41.6% benign(0.01) tolerated(0.05) neutral(0.346) superfamily_LuxS/MPP-like metallohydrolase VWA3A 146177 genome.wustl.edu 37 16 22144301 22144301 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173615.3 +1 validated p.E651 0.672 70 0% 32 15.6% 0 - - - - superfamily_vWA-like VWA3A 146177 genome.wustl.edu 37 16 22149729 22149729 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173615.3 +1 validated p.G730* 0.006 233 0.4% 100 20% 2 50% - - - NULL EEF2K 29904 genome.wustl.edu 37 16 22237147 22237147 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013302.3 +1 reviewed p.D33N 0.961 114 0% 62 16.1% 9 66.6% possibly_damaging(0.683) tolerated(0.07) deleterious(0.562) NULL EEF2K 29904 genome.wustl.edu 37 16 22268994 22268994 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013302.3 +1 reviewed p.S311Y 1.000 200 0% 104 18.3% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like POLR3E 55718 genome.wustl.edu 37 16 22319510 22319510 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000418581 +1 known p.R4H 0.060 141 0% 118 15.3% 25 36% - - - HMMPfam_Sin_N POLR3E 55718 genome.wustl.edu 37 16 22337521 22337521 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018119.2 +1 validated p.H596 0.707 25 0% 14 35.7% 37 37.8% - - - NULL USP31 57478 genome.wustl.edu 37 16 23080567 23080567 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020718.3 -1 validated p.S953 0.000 130 0% 102 22.5% 2 0% - - - NULL SCNN1G 6340 genome.wustl.edu 37 16 23197692 23197692 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039.3 +1 reviewed p.L34I 0.381 66 0% 54 18.5% 3 100% possibly_damaging(0.454) tolerated(0.14) neutral(0.398) HMMPfam_ASC GGA2 23062 genome.wustl.edu 37 16 23480255 23480255 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015044.4 -1 reviewed p.M561I 0.967 224 0% 97 14.4% 72 13.8% benign(0.005) tolerated(0.22) neutral(0.042) HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2,superfamily_Clath_adapt UBFD1 56061 genome.wustl.edu 37 16 23578376 23578376 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019116.2 +1 validated p.D269N 1.000 174 0% 129 24% 31 54.8% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) NULL PALB2 79728 genome.wustl.edu 37 16 23625326 23625326 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024675.3 -1 reviewed p.M1067T 1.000 338 0% 220 24.1% 16 31.2% benign(0) tolerated(0.34) neutral(0.023) superfamily_WD40_like PALB2 79728 genome.wustl.edu 37 16 23646995 23646995 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024675.3 -1 reviewed p.A291V 0.021 173 0% 132 22% 1 0% benign(0.009) tolerated(0.46) neutral(0.013) NULL ERN2 10595 genome.wustl.edu 37 16 23706143 23706143 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033266.3 -1 validated p.A717V 0.006 77 0% 51 15.7% 1 0% benign(0) tolerated(0.64) neutral(0.003) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CACNG3 10368 genome.wustl.edu 37 16 24373001 24373001 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006539.2 +1 reviewed p.H255 1.000 279 0% 116 29.3% 0 - - - - NULL RBBP6 5930 genome.wustl.edu 37 16 24580685 24580685 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006910.4 +1 reviewed p.R892* 1.000 164 0% 164 18.9% 6 16.6% - - - NULL RBBP6 5930 genome.wustl.edu 37 16 24583226 24583226 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006910.4 +1 reviewed p.K1613 1.000 210 0% 254 20.5% 23 21.7% - - - NULL FLJ45256 400511 genome.wustl.edu 37 16 24674683 24674683 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_041134.1 -1 model NULL 0.001 30 0% 21 19% 0 - - - - - TNRC6A 27327 genome.wustl.edu 37 16 24801346 24801346 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014494.2 +1 reviewed p.T461 1.000 144 0% 52 21.2% 1 0% - - - NULL TNRC6A 27327 genome.wustl.edu 37 16 24801529 24801529 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014494.2 +1 reviewed p.W522* 1.000 265 0% 119 12.6% 2 0% - - - NULL TNRC6A 27327 genome.wustl.edu 37 16 24816352 24816352 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014494.2 +1 reviewed p.M1334I 1.000 322 0% 125 24% 2 50% benign(0.012) tolerated(0.16) neutral(0.060) NULL TNRC6A 27327 genome.wustl.edu 37 16 24829957 24829957 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450465 +1 known p.L563M 1.000 418 0.2% 170 27.1% 14 57.1% - - - NULL SLC5A11 115584 genome.wustl.edu 37 16 24902339 24902339 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052944.2 +1 provisional p.P272S 1.000 136 0% 55 27.3% 0 - possibly_damaging(0.639) deleterious(0.04) deleterious(0.573) HMMPfam_SSF ARHGAP17 55114 genome.wustl.edu 37 16 24931497 24931497 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006634.1 -1 validated p.R867H 0.996 533 0% 295 14.2% 107 24.2% possibly_damaging(0.923) tolerated(0.67) neutral(0.375) NULL JMJD5 79831 genome.wustl.edu 37 16 27225022 27225022 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145348.1 +1 reviewed p.P243 0.163 146 0% 98 22.4% 3 0% - - - superfamily_SSF51197 JMJD5 79831 genome.wustl.edu 37 16 27230432 27230432 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145348.1 +1 reviewed e6+1 1.000 187 0% 123 13.8% 0 - - - - - IL4R 3566 genome.wustl.edu 37 16 27357805 27357805 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000418.2 +1 reviewed p.G127* 0.000 127 0% 87 21.8% 19 15.7% - - - superfamily_Fibronectin type III GTF3C1 2975 genome.wustl.edu 37 16 27472809 27472809 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001520.3 -1 validated p.P2064 0.033 42 0% 34 26.5% 100 45% - - - NULL GTF3C1 2975 genome.wustl.edu 37 16 27506720 27506720 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001520.3 -1 validated p.P815H 1.000 64 0% 49 14.3% 9 55.5% possibly_damaging(0.862) deleterious(0.01) deleterious(0.739) NULL XPO6 23214 genome.wustl.edu 37 16 28145176 28145176 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015171.2 -1 provisional p.A508T 0.997 103 0% 37 27% 35 28.5% benign(0) tolerated(0.71) neutral(0.002) superfamily_ARM repeat LOC100288452 100288452 genome.wustl.edu 37 16 28502919 28502919 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343461.1 +1 model p.S6Y 0.001 66 0% 44 20.5% 1 100% - - - NULL IL27 246778 genome.wustl.edu 37 16 28511053 28511053 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145659.3 -1 reviewed p.A217 0.703 61 0% 36 30.6% 1 0% - - - NULL SULT1A1 6817 genome.wustl.edu 37 16 28619842 28619842 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001055.2 -1 reviewed p.M77I 0.007 600 0% 624 15.2% 102 49% benign(0) tolerated(0.19) neutral(0.050) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases SULT1A1 6817 genome.wustl.edu 37 16 28620135 28620135 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001055.2 -1 reviewed p.Y14 0.008 311 0% 398 10.8% 55 43.6% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ATXN2L 11273 genome.wustl.edu 37 16 28845717 28845717 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148414.1 +1 reviewed p.G742 1.000 155 0% 121 14% 65 0% - - - NULL ATXN2L 11273 genome.wustl.edu 37 16 28846968 28846968 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148414.1 +1 reviewed p.P928 1.000 43 0% 71 29.6% 130 23.8% - - - NULL ATXN2L 11273 genome.wustl.edu 37 16 28847783 28847783 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148414.1 +1 reviewed p.P1092 1.000 101 0% 120 20.8% 71 35.2% - - - NULL TUFM 7284 genome.wustl.edu 37 16 28855752 28855752 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003321.4 -1 reviewed p.Y269H 1.000 104 0% 89 27% 422 39.3% benign(0.003) tolerated(0.06) neutral(0.323) superfamily_Translation proteins,superfamily_P-loop containing nucleoside triphosphate hydrolases SH2B1 25970 genome.wustl.edu 37 16 28880341 28880341 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015503.2 +1 reviewed p.S352 0.000 212 0% 215 21.9% 25 28% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ATP2A1 487 genome.wustl.edu 37 16 28890058 28890058 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173201.2 +1 reviewed p.T22 0.344 116 0% 176 30.1% 2 100% - - - HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M ATP2A1 487 genome.wustl.edu 37 16 28898770 28898770 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173201.2 +1 reviewed p.A219T 1.000 132 0% 100 28% 1 100% probably_damaging(0.979) deleterious(0) deleterious(0.867) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M RABEP2 79874 genome.wustl.edu 37 16 28925818 28925818 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024816.2 -1 validated p.E211D 0.985 34 0% 32 25% 23 13% benign(0.001) tolerated(0.07) neutral(0.319) NULL CD19 930 genome.wustl.edu 37 16 28944245 28944245 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001770.5 +1 reviewed p.R123 1.000 152 0% 136 20.6% 6 0% - - - NULL CD19 930 genome.wustl.edu 37 16 28948662 28948662 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001770.5 +1 reviewed p.N423 0.247 177 0% 146 30.1% 7 0% - - - NULL SPNS1 83985 genome.wustl.edu 37 16 28993754 28993754 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142448.1 +1 validated p.R348H 0.999 168 0% 142 31% 152 36.1% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_MFS general substrate transporter SPNS1 83985 genome.wustl.edu 37 16 28994535 28994535 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142448.1 +1 validated p.R415H 0.998 102 0% 97 25.8% 183 42.6% probably_damaging(0.989) deleterious(0) deleterious(0.884) superfamily_MFS general substrate transporter SPNS1 83985 genome.wustl.edu 37 16 28994592 28994592 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142448.1 +1 validated p.S434N 1.000 146 0% 160 21.2% 124 53.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_MFS general substrate transporter ZG16 653808 genome.wustl.edu 37 16 29791686 29791686 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152338.2 +1 validated p.I150 0.000 220 0% 123 21.1% 0 - - - - HMMPfam_Jacalin,superfamily_Mannose-bd_lectin KIF22 3835 genome.wustl.edu 37 16 29809965 29809965 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007317.1 +1 reviewed p.R149Q 1.000 112 0% 134 32.1% 73 42.4% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 KIF22 3835 genome.wustl.edu 37 16 29810768 29810768 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007317.1 +1 reviewed p.L315I 0.999 88 0% 84 25% 143 40.5% probably_damaging(0.965) tolerated(0.21) neutral(0.451) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 KIF22 3835 genome.wustl.edu 37 16 29816207 29816207 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007317.1 +1 reviewed p.L584I 0.253 82 0% 83 30.1% 263 42.9% possibly_damaging(0.535) tolerated(0.17) neutral(0.240) NULL MAZ 4150 genome.wustl.edu 37 16 29821422 29821422 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002383.2 +1 validated p.A435V 1.000 23 0% 24 33.3% 126 46.8% possibly_damaging(0.93) tolerated(0.06) deleterious(0.699) NULL C16orf53 79447 genome.wustl.edu 37 16 29828323 29828323 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024516.3 +1 validated p.E159 1.000 120 0% 68 22.1% 84 39.2% - - - NULL MVP 9961 genome.wustl.edu 37 16 29845090 29845090 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005115.3 +1 reviewed p.A120T 1.000 738 0% 361 23.5% 151 47.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Vault MVP 9961 genome.wustl.edu 37 16 29853109 29853109 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005115.3 +1 reviewed p.V462M 0.894 56 0% 38 28.9% 322 39.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL MVP 9961 genome.wustl.edu 37 16 29853333 29853333 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005115.3 +1 reviewed p.R512C 1.000 66 0% 43 14% 364 35.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL MVP 9961 genome.wustl.edu 37 16 29857200 29857200 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005115.3 +1 reviewed p.L680M 1.000 51 0% 41 17.1% 375 37.6% probably_damaging(0.982) tolerated(0.11) deleterious(0.698) NULL SEZ6L2 26470 genome.wustl.edu 37 16 29889708 29889708 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201575.2 -1 validated p.V538I 1.000 117 0% 108 28.7% 122 53.2% benign(0.253) tolerated(0.63) neutral(0.029) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain KCTD13 253980 genome.wustl.edu 37 16 29918369 29918369 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178863.2 -1 provisional p.P272S 1.000 62 0% 58 19% 11 9% benign(0.001) tolerated(0.75) neutral(0.002) NULL INO80E 283899 genome.wustl.edu 37 16 30012331 30012331 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173618.1 +1 provisional p.A122 0.998 61 0% 88 26.1% 142 42.2% - - - NULL DOC2A 8448 genome.wustl.edu 37 16 30020570 30020570 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003586.2 -1 reviewed p.L124I 1.000 167 0% 138 27.5% 1 0% probably_damaging(0.997) tolerated(0.06) deleterious(0.788) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB C16orf92 146378 genome.wustl.edu 37 16 30035069 30035069 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109660.1 +1 predicted p.T51M 0.000 120 0% 143 23.1% 0 - benign(0.007) tolerated(0.09) neutral(0.296) NULL CORO1A 11151 genome.wustl.edu 37 16 30199763 30199763 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007074.2 +1 validated p.R383W 0.978 30 0% 38 26.3% 374 0% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) HMMPfam_DUF1900 MYLPF 29895 genome.wustl.edu 37 16 30387978 30387978 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013292.3 +1 provisional p.K105N 1.000 176 0% 190 20.5% 0 - probably_damaging(0.988) tolerated(0.13) deleterious(0.690) HMMSmart_SM00054,superfamily_EF-hand SEPT1 1731 genome.wustl.edu 37 16 30389962 30389962 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052838.2 -1 reviewed p.T329I 0.999 53 0% 74 10.8% 73 5.4% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL SEPHS2 22928 genome.wustl.edu 37 16 30455847 30455847 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000418751 -1 known p.A283V 1.000 193 0% 234 15.8% 149 22.1% possibly_damaging(0.943) tolerated(0.06) deleterious(0.710) HMMPfam_AIRS_C,superfamily_AIR_synth_C SEPHS2 22928 genome.wustl.edu 37 16 30456144 30456144 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000418751 -1 known p.A184D 1.000 165 0% 140 15.7% 135 28.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AIRS_C,superfamily_AIR_synth_C ITGAL 3683 genome.wustl.edu 37 16 30510504 30510504 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002209.2 +1 reviewed p.V648I 0.089 265 0% 173 24.9% 20 0% benign(0.01) tolerated(0.36) neutral(0.021) HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains ZNF764 92595 genome.wustl.edu 37 16 30566572 30566572 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033410.3 -1 validated p.D390E 0.178 36 0% 39 28.2% 5 0% probably_damaging(0.998) tolerated(0.2) deleterious(0.523) NULL ZNF785 146540 genome.wustl.edu 37 16 30594427 30594427 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152458.5 -1 provisional p.G224 0.721 81 0% 93 15.1% 2 100% - - - superfamily_C2H2 and C2HC zinc fingers PRR14 78994 genome.wustl.edu 37 16 30664068 30664068 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024031.2 +1 provisional p.T73 0.000 205 0% 189 21.2% 29 37.9% - - - NULL SRCAP 10847 genome.wustl.edu 37 16 30718971 30718971 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006662.2 +1 validated p.L191 0.991 225 0% 186 24.7% 8 12.5% - - - HMMPfam_HSA,HMMSmart_SM00573 SRCAP 10847 genome.wustl.edu 37 16 30723062 30723062 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006662.2 +1 validated p.S497P 0.999 153 0% 137 24.8% 5 60% unknown(0) - - NULL SRCAP 10847 genome.wustl.edu 37 16 30735507 30735507 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006662.2 +1 validated p.A1588T 0.988 247 0% 240 10.4% 10 30% unknown(0) - - NULL SRCAP 10847 genome.wustl.edu 37 16 30748629 30748629 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006662.2 +1 validated p.T2423I 0.460 214 0% 156 21.2% 45 31.1% unknown(0) - - NULL C16orf93 90835 genome.wustl.edu 37 16 30768961 30768961 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001014979.1 -1 predicted p.L241I 0.997 123 0% 152 27% 10 50% probably_damaging(0.988) tolerated(0.82) neutral(0.438) NULL RNF40 9810 genome.wustl.edu 37 16 30780031 30780031 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014771.2 +1 reviewed p.A691T 1.000 139 0% 114 23.7% 39 43.5% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL ZNF629 23361 genome.wustl.edu 37 16 30793718 30793718 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080417.1 -1 provisional p.P644L 0.011 134 0% 130 30.8% 7 42.8% benign(0.001) tolerated(0.14) neutral(0.249) superfamily_SSF57667 SETD1A 9739 genome.wustl.edu 37 16 30977194 30977194 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014712.1 +1 provisional p.E664 1.000 84 0% 96 15.6% 5 40% - - - NULL STX4 6810 genome.wustl.edu 37 16 31045127 31045127 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004604.3 +1 provisional p.M1V 1.000 67 0% 57 15.8% 35 8.5% possibly_damaging(0.94) deleterious(0) deleterious(0.830) NULL ZNF646 9726 genome.wustl.edu 37 16 31089640 31089640 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014699.3 +1 validated p.R665 0.988 98 0% 84 34.5% 3 33.3% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF646 9726 genome.wustl.edu 37 16 31092029 31092029 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014699.3 +1 validated p.A1462T 0.005 425 0% 359 12.5% 6 16.6% benign(0) tolerated(0.36) neutral(0.020) NULL PRSS53 339105 genome.wustl.edu 37 16 31097716 31097716 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039503.2 -1 validated p.P202L 0.992 145 0% 119 20.2% 0 - probably_damaging(0.999) tolerated(0.56) deleterious(0.497) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys KAT8 84148 genome.wustl.edu 37 16 31141590 31141590 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182958.2 +1 validated p.E305 1.000 72 1.4% 101 18.8% 75 37.3% - - - HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat) PRSS36 146547 genome.wustl.edu 37 16 31155046 31155046 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173502.3 -1 validated p.A278D 0.135 93 0% 136 12.5% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys PYCARD 29108 genome.wustl.edu 37 16 31213056 31213056 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013258.3 -1 reviewed p.Y146 0.995 127 0% 155 15.5% 435 25.7% - - - HMMPfam_CARD,superfamily_DEATH domain TRIM72 493829 genome.wustl.edu 37 16 31230831 31230831 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008274.3 +1 validated p.E236D 1.000 55 0% 71 18.3% 1 0% possibly_damaging(0.942) tolerated(0.14) deleterious(0.637) NULL ITGAD 3681 genome.wustl.edu 37 16 31405558 31405558 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005353.2 +1 validated p.V11 0.605 189 0% 170 24.1% 0 - - - - NULL ZNF843 283933 genome.wustl.edu 37 16 31447727 31447727 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136509.1 -1 provisional p.C148 0.001 54 0% 46 21.7% 0 - - - - NULL ARMC5 79798 genome.wustl.edu 37 16 31476401 31476401 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024742.2 +1 validated p.A686D 0.000 58 0% 110 21.8% 0 - unknown(0) - - NULL C16orf58 64755 genome.wustl.edu 37 16 31504479 31504479 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436843 -1 known p.L41M 0.000 54 0% 70 20% 5 80% - - - NULL C16orf58 64755 genome.wustl.edu 37 16 31505066 31505066 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022744.2 -1 validated p.I272 1.000 402 0.2% 317 24% 94 39.3% - - - HMMPfam_DUF647 ENSG00000214627 0 genome.wustl.edu 37 16 31997671 31997671 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398685 +1 known p.A259D 0.261 126 0% 179 16.2% 0 - - - - NULL ENSG00000198229 0 genome.wustl.edu 37 16 32077639 32077639 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000354689 +1 known p.S85N 1.000 335 0% 232 15.1% 16 0% probably_damaging(0.995) tolerated(0.14) deleterious(0.707) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin IGHV2OR16-5 100129631 genome.wustl.edu 37 16 32859336 32859336 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398679 +1 known p.F73I 0.001 192 0% 232 12.5% 0 - benign(0.001) tolerated(0.39) neutral(0.016) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin ENSG00000226511 0 genome.wustl.edu 37 16 33740826 33740826 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450856 -1 known p.A115T 1.000 380 0.5% 287 15.7% 2 0% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin ENSG00000226511 0 genome.wustl.edu 37 16 33740968 33740968 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450856 -1 known p.E67 1.000 425 0.2% 421 15.2% 2 0% - - - HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin SHCBP1 79801 genome.wustl.edu 37 16 46617520 46617520 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024745.4 -1 validated p.N534I 1.000 278 0% 106 26.4% 13 38.4% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_SM00710,superfamily_Pectin lyase-like MYLK3 91807 genome.wustl.edu 37 16 46771747 46771747 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182493.2 -1 validated p.P293T 0.004 52 0% 41 17.1% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL GPT2 84706 genome.wustl.edu 37 16 46956214 46956214 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133443.2 +1 validated p.Q366 1.000 88 0% 55 23.6% 52 46.1% - - - superfamily_PLP-dependent transferases DNAJA2 10294 genome.wustl.edu 37 16 47001554 47001554 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005880.3 -1 reviewed p.G150C 1.000 293 0% 274 10.6% 63 12.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DnaJ_CXXCXGXG,superfamily_DnaJ/Hsp40 cysteine-rich domain,superfamily_HSP40/DnaJ peptide-binding domain NETO2 81831 genome.wustl.edu 37 16 47117172 47117172 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018092.3 -1 reviewed p.R513Q 1.000 244 0% 158 24.1% 8 25% probably_damaging(0.968) deleterious(0.02) deleterious(0.793) NULL NETO2 81831 genome.wustl.edu 37 16 47156682 47156682 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018092.3 -1 reviewed p.E180 1.000 322 0% 126 24.6% 3 0% - - - HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ITFG1 81533 genome.wustl.edu 37 16 47252812 47252812 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030790.3 -1 provisional p.V474I 1.000 400 0% 368 25.5% 70 38.5% benign(0.047) tolerated(0.63) neutral(0.007) NULL PHKB 5257 genome.wustl.edu 37 16 47614214 47614214 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000293.2 +1 reviewed p.G240D 1.000 421 0% 346 20.8% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases PHKB 5257 genome.wustl.edu 37 16 47621611 47621611 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000293.2 +1 reviewed p.L269 0.949 466 0% 305 17% 10 60% - - - HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases ABCC12 94160 genome.wustl.edu 37 16 48180243 48180243 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033226.2 -1 reviewed p.T31 1.000 268 0% 161 23.6% 0 - - - - NULL ABCC11 85320 genome.wustl.edu 37 16 48242364 48242364 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032583.3 -1 reviewed p.S551I 0.999 128 0% 73 13.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCC11 85320 genome.wustl.edu 37 16 48247414 48247414 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032583.3 -1 reviewed p.F432L 0.124 245 0% 84 16.7% 0 - possibly_damaging(0.556) tolerated(0.39) neutral(0.206) superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC11 85320 genome.wustl.edu 37 16 48250120 48250120 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032583.3 -1 reviewed p.A286T 0.000 248 0% 94 25.5% 0 - benign(0) tolerated(0.19) neutral(0.050) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC11 85320 genome.wustl.edu 37 16 48258199 48258199 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032583.3 -1 reviewed p.L179 0.021 162 0% 80 36.2% 0 - - - - HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain ABCC11 85320 genome.wustl.edu 37 16 48265769 48265769 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032583.3 -1 reviewed p.D22N 0.445 341 0.3% 234 25.6% 0 - benign(0.004) deleterious(0) neutral(0.445) NULL N4BP1 9683 genome.wustl.edu 37 16 48580066 48580066 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153029.3 -1 validated p.V775 0.641 166 0% 95 10.5% 30 3.3% - - - NULL N4BP1 9683 genome.wustl.edu 37 16 48594770 48594770 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153029.3 -1 validated p.R595M 0.983 309 0% 110 22.7% 14 57.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ZNF423 23090 genome.wustl.edu 37 16 49669608 49669608 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015069.2 -1 reviewed p.G1152V 1.000 56 0% 55 14.5% 6 50% benign(0.041) deleterious(0.02) neutral(0.386) NULL ZNF423 23090 genome.wustl.edu 37 16 49671830 49671830 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015069.2 -1 reviewed p.C411* 1.000 115 0% 107 27.1% 1 0% - - - HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2 ZNF423 23090 genome.wustl.edu 37 16 49672157 49672157 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015069.2 -1 reviewed p.E302D 1.000 116 0% 141 27% 2 50% benign(0.006) tolerated(0.11) neutral(0.272) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 ZNF423 23090 genome.wustl.edu 37 16 49672654 49672654 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015069.2 -1 reviewed p.P137S 1.000 92 0% 106 24.5% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF57667 HEATR3 55027 genome.wustl.edu 37 16 50118044 50118044 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182922.2 +1 provisional e9-1 1.000 438 0.5% 210 20% 2 50% - - - - PAPD5 64282 genome.wustl.edu 37 16 50258894 50258894 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040284.2 +1 validated p.P310H 1.000 513 0% 245 19.6% 5 40% possibly_damaging(0.86) deleterious(0) deleterious(0.777) NULL ADCY7 113 genome.wustl.edu 37 16 50347925 50347925 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114.3 +1 reviewed p.T936 0.203 161 0% 108 18.5% 14 28.5% - - - HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase NKD1 85407 genome.wustl.edu 37 16 50667400 50667400 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033119.3 +1 provisional p.A374V 0.009 19 0% 17 41.2% 1 0% benign(0.074) tolerated(0.05) neutral(0.350) NULL NOD2 64127 genome.wustl.edu 37 16 50745693 50745693 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022162.1 +1 reviewed p.A624V 0.035 84 0% 108 25% 2 0% benign(0.313) tolerated(0.06) neutral(0.420) NULL CYLD 1540 genome.wustl.edu 37 16 50783886 50783886 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015247.2 +1 reviewed p.N93D 1.000 161 0% 165 23.6% 7 0% benign(0.001) tolerated(0.35) neutral(0.021) NULL CYLD 1540 genome.wustl.edu 37 16 50827515 50827515 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015247.2 +1 reviewed p.Y803 0.747 420 0% 102 11.8% 31 9.6% - - - HMMPfam_UCH,superfamily_Cysteine proteinases SALL1 6299 genome.wustl.edu 37 16 51172959 51172959 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002968.2 -1 reviewed p.S1058 0.970 241 0% 316 21.2% 20 80% - - - NULL SALL1 6299 genome.wustl.edu 37 16 51172984 51172984 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002968.2 -1 reviewed p.T1050I 1.000 246 0% 321 25.5% 12 8.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SALL1 6299 genome.wustl.edu 37 16 51173912 51173912 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002968.2 -1 reviewed p.R741W 1.000 134 0% 178 24.2% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SALL1 6299 genome.wustl.edu 37 16 51174552 51174552 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002968.2 -1 reviewed p.P527 0.019 131 0% 164 22.6% 11 81.8% - - - NULL SALL1 6299 genome.wustl.edu 37 16 51175169 51175169 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002968.2 -1 reviewed p.P322S 1.000 224 0% 233 24% 5 80% probably_damaging(0.954) tolerated(0.16) neutral(0.457) NULL TOX3 27324 genome.wustl.edu 37 16 52478220 52478220 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080430.2 -1 reviewed p.L319M 1.000 261 0% 155 21.9% 3 66.6% probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box CHD9 80205 genome.wustl.edu 37 16 53272458 53272458 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025134.4 +1 validated p.Q946P 1.000 478 0% 203 22.7% 1 100% benign(0.002) tolerated(0.11) neutral(0.272) HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540 CHD9 80205 genome.wustl.edu 37 16 53301326 53301326 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025134.4 +1 validated p.R1481W 1.000 358 0.3% 100 19% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52540 CHD9 80205 genome.wustl.edu 37 16 53307609 53307609 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025134.4 +1 validated p.Q1597* 1.000 174 0% 46 26.1% 2 0% - - - superfamily_SSF52540 AKTIP 64400 genome.wustl.edu 37 16 53526358 53526358 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012398.1 -1 reviewed p.P282H 1.000 207 0% 168 16.7% 29 37.9% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL RPGRIP1L 23322 genome.wustl.edu 37 16 53674972 53674972 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015272.2 -1 reviewed p.F977 1.000 329 0.3% 362 21.5% 9 44.4% - - - NULL RPGRIP1L 23322 genome.wustl.edu 37 16 53679816 53679816 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015272.2 -1 reviewed p.L802M 1.000 234 0% 268 25% 4 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) IRX5 10265 genome.wustl.edu 37 16 54967587 54967587 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005853.5 +1 validated p.F418 1.000 11 0% 15 26.7% 0 - - - - NULL MMP2 4313 genome.wustl.edu 37 16 55516866 55516866 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004530.4 +1 reviewed p.L67 1.000 135 0% 126 23% 34 0% - - - superfamily_PGBD_like MMP2 4313 genome.wustl.edu 37 16 55525797 55525797 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004530.4 +1 reviewed p.A422E 0.999 111 0% 76 22.4% 80 1.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486 SLC6A2 6530 genome.wustl.edu 37 16 55705903 55705903 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001043.3 +1 reviewed p.V154I 1.000 282 0% 139 25.9% 0 - possibly_damaging(0.842) tolerated(0.14) deleterious(0.572) HMMPfam_SNF CES1 1066 genome.wustl.edu 37 16 55844473 55844473 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025195.1 -1 reviewed p.V425A 0.000 467 0% 171 14.6% 4 0% benign(0.019) tolerated(0.38) neutral(0.019) HMMPfam_COesterase,superfamily_SSF53474 OGFOD1 55239 genome.wustl.edu 37 16 56504480 56504480 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018233.3 +1 validated p.F354L 0.998 366 0% 106 24.5% 37 35.1% possibly_damaging(0.773) tolerated(0.16) neutral(0.347) HMMPfam_Ofd1_CTDD BBS2 583 genome.wustl.edu 37 16 56535282 56535282 + Missense_Mutation SNP C C T rs192007013 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031885.3 -1 reviewed p.R403H 0.995 309 0% 149 20.1% 21 33.3% benign(0.001) tolerated(0.54) neutral(0.007) NULL BBS2 583 genome.wustl.edu 37 16 56543929 56543929 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031885.3 -1 reviewed p.E184D 1.000 543 0% 309 19.7% 16 37.5% possibly_damaging(0.571) tolerated(1) neutral(0.196) superfamily_WD40 repeat-like,HMMPfam_FG-GAP SLC12A3 6559 genome.wustl.edu 37 16 56903726 56903726 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000339.2 +1 reviewed p.K197N 1.000 294 0% 258 21.7% 0 - benign(0.116) tolerated(0.35) neutral(0.029) HMMPfam_AA_permease HERPUD1 9709 genome.wustl.edu 37 16 56976050 56976050 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014685.2 +1 reviewed p.H304 0.986 382 0% 193 15% 169 13.6% - - - NULL NLRC5 84166 genome.wustl.edu 37 16 57059703 57059703 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032206.3 +1 validated p.S283I 0.005 123 0% 117 17.9% 10 30% possibly_damaging(0.856) tolerated(0.19) neutral(0.380) HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases NLRC5 84166 genome.wustl.edu 37 16 57068113 57068113 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032206.3 +1 validated p.A859 0.000 68 0% 48 22.9% 29 44.8% - - - superfamily_RNI-like NLRC5 84166 genome.wustl.edu 37 16 57111706 57111706 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032206.3 +1 validated p.E1665D 0.998 224 0% 173 24.9% 29 20.6% probably_damaging(0.99) tolerated(0.1) deleterious(0.728) HMMSmart_SM00368,superfamily_RNI-like RSPRY1 89970 genome.wustl.edu 37 16 57238576 57238576 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133368.1 +1 provisional p.I2 1.000 219 0% 270 24.4% 11 72.7% - - - NULL RSPRY1 89970 genome.wustl.edu 37 16 57261310 57261310 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133368.1 +1 provisional p.Q406 1.000 279 0% 170 24.1% 17 52.9% - - - HMMPfam_SPRY,HMMSmart_SM00449 CCL22 6367 genome.wustl.edu 37 16 57394395 57394395 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002990.3 +1 reviewed p.Y40 0.001 73 0% 38 26.3% 1 0% - - - PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines CX3CL1 6376 genome.wustl.edu 37 16 57416023 57416023 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002996.3 +1 provisional p.R91 0.000 40 0% 24 20.8% 99 40.4% - - - superfamily_Interleukin 8-like chemokines POLR2C 5432 genome.wustl.edu 37 16 57503667 57503667 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032940.2 +1 reviewed p.Q145* 1.000 119 0% 103 23.3% 54 1.8% - - - superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMPfam_RNA_pol_A_bac,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMSmart_SM00662,PatternScan_EF_HAND_1 GPR114 221188 genome.wustl.edu 37 16 57597137 57597137 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153837.1 +1 provisional p.A92V 0.000 84 0% 78 11.5% 4 0% benign(0.071) tolerated(0.2) neutral(0.054) NULL GPR114 221188 genome.wustl.edu 37 16 57601927 57601927 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153837.1 +1 provisional p.S327 1.000 90 0% 91 12.1% 5 20% - - - HMMPfam_7tm_2 GPR56 9289 genome.wustl.edu 37 16 57695769 57695769 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145771.1 +1 reviewed p.L615I 1.000 252 0% 218 25.2% 104 34.6% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_7tm_2 CCDC135 84229 genome.wustl.edu 37 16 57756973 57756973 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032269.5 +1 validated p.K490E 0.990 128 0% 68 25% 9 66.6% benign(0.202) deleterious(0.05) neutral(0.365) NULL KATNB1 10300 genome.wustl.edu 37 16 57785560 57785560 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005886.2 +1 reviewed p.S147N 1.000 26 0% 38 42.1% 30 33.3% benign(0.167) tolerated(0.11) neutral(0.287) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 KIFC3 3801 genome.wustl.edu 37 16 57793712 57793712 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005550.3 -1 validated p.R802W 0.256 20 0% 34 20.6% 18 11.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL CNGB1 1258 genome.wustl.edu 37 16 57921977 57921977 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001297.4 -1 reviewed p.R1082C 0.996 70 0% 101 27.7% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_cAMP-binding domain-like CNGB1 1258 genome.wustl.edu 37 16 57974189 57974189 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001297.4 -1 reviewed p.G386 0.000 149 0% 115 19.1% 0 - - - - NULL ZNF319 57567 genome.wustl.edu 37 16 58031051 58031051 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020807.1 -1 provisional p.C373 0.998 130 0% 139 22.3% 7 28.5% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF319 57567 genome.wustl.edu 37 16 58031230 58031230 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020807.1 -1 provisional p.P314S 1.000 26 0% 22 45.5% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF57667 C16orf57 79650 genome.wustl.edu 37 16 58048194 58048194 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024598.2 +1 validated p.N156S 0.994 260 0% 226 12.8% 42 19% benign(0.002) tolerated(0.32) neutral(0.024) HMMPfam_HVSL MMP15 4324 genome.wustl.edu 37 16 58074072 58074072 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002428.2 +1 reviewed p.S245I 1.000 37 0% 41 29.3% 81 40.7% possibly_damaging(0.684) deleterious(0) deleterious(0.689) HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486 MMP15 4324 genome.wustl.edu 37 16 58075753 58075753 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002428.2 +1 reviewed p.R381 0.007 79 0% 70 20% 51 43.1% - - - superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX CCDC113 29070 genome.wustl.edu 37 16 58312454 58312454 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014157.3 +1 validated p.Q320H 0.002 140 0% 75 29.3% 10 70% benign(0.002) tolerated(0.16) neutral(0.059) NULL NDRG4 65009 genome.wustl.edu 37 16 58538089 58538089 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130487.1 +1 reviewed p.F105 0.150 165 0% 153 22.9% 1 0% - - - HMMPfam_Ndr,superfamily_SSF53474 NDRG4 65009 genome.wustl.edu 37 16 58540916 58540916 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130487.1 +1 reviewed p.N258S 1.000 133 0% 122 16.4% 0 - probably_damaging(0.993) tolerated(0.6) neutral(0.455) HMMPfam_Ndr,superfamily_SSF53474 SETD6 79918 genome.wustl.edu 37 16 58550478 58550478 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024860.2 +1 validated p.I167 0.659 195 0% 264 23.1% 7 42.8% - - - HMMPfam_SET,superfamily_SET domain SETD6 79918 genome.wustl.edu 37 16 58552390 58552390 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024860.2 +1 validated p.A329 0.954 547 0% 561 21.4% 11 45.4% - - - superfamily_RuBisCo LSMT C-terminal substrate-binding domain SETD6 79918 genome.wustl.edu 37 16 58552789 58552789 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024860.2 +1 validated p.T402 0.869 322 0% 310 25.5% 23 47.8% - - - superfamily_RuBisCo LSMT C-terminal substrate-binding domain SLC38A7 55238 genome.wustl.edu 37 16 58706108 58706108 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018231.1 -1 provisional p.P308H 0.996 80 0% 57 17.5% 21 33.3% possibly_damaging(0.476) deleterious(0.01) deleterious(0.562) HMMPfam_Aa_trans SLC38A7 55238 genome.wustl.edu 37 16 58713967 58713967 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018231.1 -1 provisional p.R22W 1.000 46 0% 40 30% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CDH8 1006 genome.wustl.edu 37 16 61689529 61689529 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001796.2 -1 reviewed p.P584H 0.998 394 0% 223 15.2% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH8 1006 genome.wustl.edu 37 16 61689626 61689626 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001796.2 -1 reviewed e10-1 1.000 265 0% 156 25.6% 0 - - - - - CDH8 1006 genome.wustl.edu 37 16 61854840 61854840 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001796.2 -1 reviewed p.R338M 1.000 337 0% 74 24.3% 0 - benign(0.337) tolerated(0.1) neutral(0.392) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH8 1006 genome.wustl.edu 37 16 61858915 61858915 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001796.2 -1 reviewed e4+1 1.000 265 0% 73 20.5% 0 - - - - - CDH8 1006 genome.wustl.edu 37 16 61935363 61935363 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001796.2 -1 reviewed p.L89 1.000 233 0% 271 20.7% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH8 1006 genome.wustl.edu 37 16 62055135 62055135 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001796.2 -1 reviewed p.R58H 1.000 250 0.4% 229 21.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL CDH11 1009 genome.wustl.edu 37 16 65025717 65025717 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001797.2 -1 reviewed p.T255 0.993 515 0% 168 24.4% 7 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH11 1009 genome.wustl.edu 37 16 65032578 65032578 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001797.2 -1 reviewed p.R137Q 1.000 248 0% 111 18.9% 4 0% probably_damaging(0.958) tolerated(0.11) deleterious(0.673) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like ENSG00000250685 0 genome.wustl.edu 37 16 65319313 65319313 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000505989 -1 known NULL 0.011 336 0% 170 21.2% 0 - - - - - CDH5 1003 genome.wustl.edu 37 16 66423306 66423306 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001795.3 +1 reviewed p.A221D 0.000 193 0% 82 25.6% 1 0% benign(0.003) tolerated(0.41) neutral(0.015) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CKLF 51192 genome.wustl.edu 37 16 66597060 66597060 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016951.2 +1 reviewed p.M91I 0.858 607 0% 531 21.7% 126 23.8% benign(0.007) tolerated(0.37) neutral(0.019) HMMPfam_MARVEL CMTM3 123920 genome.wustl.edu 37 16 66642238 66642238 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048251.1 +1 reviewed p.C58* 1.000 331 0% 392 23.5% 19 15.7% - - - HMMPfam_MARVEL CMTM4 146223 genome.wustl.edu 37 16 66651228 66651228 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178818.2 -1 reviewed p.K219N 0.000 393 0% 505 21.6% 7 42.8% possibly_damaging(0.901) - - NULL DYNC1LI2 1783 genome.wustl.edu 37 16 66783110 66783110 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006141.2 -1 validated p.E96 1.000 689 0% 726 21.6% 26 42.3% - - - HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases CCDC79 283847 genome.wustl.edu 37 16 66801332 66801332 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136505.1 -1 provisional p.T589M 0.748 274 0% 340 22.9% 0 - possibly_damaging(0.891) tolerated(0.05) deleterious(0.696) NULL CCDC79 283847 genome.wustl.edu 37 16 66824822 66824822 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136505.1 -1 provisional p.C44 1.000 265 0% 191 19.9% 0 - - - - superfamily_ARM repeat PDP2 57546 genome.wustl.edu 37 16 66918571 66918571 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020786.1 +1 validated p.S128 0.993 75 0% 60 31.7% 4 50% - - - HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain CDH16 1014 genome.wustl.edu 37 16 66946242 66946242 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004062.2 -1 reviewed p.R484H 1.000 186 0% 164 31.1% 34 70.5% probably_damaging(0.991) tolerated(0.09) deleterious(0.740) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH16 1014 genome.wustl.edu 37 16 66949970 66949970 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004062.2 -1 reviewed p.P141H 0.995 76 0% 86 12.8% 15 13.3% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Cadherin,superfamily_Cadherin-like CES3 23491 genome.wustl.edu 37 16 67005152 67005152 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024922.4 +1 validated p.Q407H 0.000 294 0% 259 16.2% 6 0% possibly_damaging(0.66) tolerated(0.56) neutral(0.240) HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases CES3 23491 genome.wustl.edu 37 16 67005169 67005169 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024922.4 +1 validated p.M413T 0.000 288 0% 259 24.3% 3 66.6% benign(0.062) deleterious(0.01) neutral(0.410) HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases C16orf70 80262 genome.wustl.edu 37 16 67159903 67159903 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025187.3 +1 provisional p.D63 0.998 434 0% 230 23% 7 0% - - - HMMPfam_UPF0183 HSF4 3299 genome.wustl.edu 37 16 67201026 67201026 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040667.2 +1 reviewed p.S210 0.996 252 0% 309 27.2% 15 46.6% unknown(0) - - HMMPfam_HSF_DNA-bind HSF4 3299 genome.wustl.edu 37 16 67201674 67201674 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040667.2 +1 reviewed p.D302 0.983 33 0% 41 14.6% 4 75% - - - NULL HSF4 3299 genome.wustl.edu 37 16 67201787 67201787 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040667.2 +1 reviewed p.S340I 1.000 35 0% 52 21.2% 8 62.5% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL EXOC3L1 283849 genome.wustl.edu 37 16 67219315 67219315 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178516.3 -1 validated p.L525 0.431 27 0% 40 32.5% 15 60% - - - HMMPfam_Sec6 SLC9A5 6553 genome.wustl.edu 37 16 67291337 67291337 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004594.2 +1 validated p.H475 1.000 307 0% 239 24.3% 2 50% - - - NULL SLC9A5 6553 genome.wustl.edu 37 16 67298345 67298345 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004594.2 +1 validated p.L645M 0.983 45 0% 41 12.2% 1 0% benign(0.37) tolerated(0.19) neutral(0.167) NULL PLEKHG4 25894 genome.wustl.edu 37 16 67319118 67319118 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129727.1 +1 reviewed p.R732M 0.991 40 0% 27 18.5% 1 100% probably_damaging(0.996) deleterious(0.03) deleterious(0.826) superfamily_DBL homology domain (DH-domain) LRRC36 55282 genome.wustl.edu 37 16 67381429 67381429 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018296.5 +1 validated p.K141 1.000 336 0% 175 12.6% 0 - - - - superfamily_L domain-like LRRC36 55282 genome.wustl.edu 37 16 67384179 67384179 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018296.5 +1 validated p.S188I 0.578 319 0.3% 211 23.7% 0 - benign(0.039) tolerated(0.08) neutral(0.302) NULL LRRC36 55282 genome.wustl.edu 37 16 67401231 67401231 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018296.5 +1 validated p.N356Y 1.000 438 0% 146 17.8% 0 - benign(0) tolerated(0.08) neutral(0.300) NULL FAM65A 79567 genome.wustl.edu 37 16 67575951 67575951 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024519.2 +1 validated p.T421I 0.000 43 0% 45 35.6% 24 54.1% benign(0.252) deleterious(0.01) neutral(0.432) NULL CTCF 10664 genome.wustl.edu 37 16 67654607 67654607 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006565.2 +1 reviewed p.K365T 1.000 188 0% 95 26.3% 24 54.1% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CTCF 10664 genome.wustl.edu 37 16 67660564 67660564 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006565.2 +1 reviewed p.S488 0.999 245 0% 135 27.4% 37 43.2% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RLTPR 146206 genome.wustl.edu 37 16 67681650 67681650 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013838.1 +1 provisional p.Q313H 0.665 37 0% 35 25.7% 2 50% benign(0.001) tolerated(0.45) neutral(0.012) HMMSmart_SM00368,superfamily_RNI-like RLTPR 146206 genome.wustl.edu 37 16 67686417 67686417 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013838.1 +1 provisional p.L954I 0.000 219 0% 334 13.8% 2 0% possibly_damaging(0.666) tolerated(0.43) neutral(0.249) NULL ACD 65057 genome.wustl.edu 37 16 67693628 67693628 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001082486.1 -1 reviewed p.V191I 0.006 31 0% 60 21.7% 38 39.4% benign(0) tolerated(0.34) neutral(0.023) NULL RANBP10 57610 genome.wustl.edu 37 16 67765375 67765375 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020850.1 -1 provisional p.K297Q 1.000 573 0% 339 13.3% 9 22.2% benign(0.063) deleterious(0.02) neutral(0.387) HMMSmart_CTLH TSNAXIP1 55815 genome.wustl.edu 37 16 67857536 67857536 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018430.2 +1 validated p.R78I 1.000 320 0% 269 23.8% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL TSNAXIP1 55815 genome.wustl.edu 37 16 67859635 67859635 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018430.2 +1 validated p.R240C 0.995 146 0% 136 19.9% 1 100% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL EDC4 23644 genome.wustl.edu 37 16 67911275 67911275 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014329.3 +1 validated p.V203M 1.000 244 0% 326 18.7% 28 39.2% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_SM00320,superfamily_WD40 repeat-like EDC4 23644 genome.wustl.edu 37 16 67914738 67914738 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014329.3 +1 validated p.Q792H 1.000 37 0% 45 20% 32 46.8% benign(0.001) deleterious(0.02) neutral(0.383) NULL EDC4 23644 genome.wustl.edu 37 16 67916940 67916940 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014329.3 +1 validated p.A1237T 0.724 72 0% 94 22.3% 154 34.4% benign(0) tolerated(0.65) neutral(0.003) NULL PSKH1 5681 genome.wustl.edu 37 16 67943213 67943213 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006742.2 +1 validated p.K187N 1.000 220 0% 108 24.1% 14 50% possibly_damaging(0.659) deleterious(0) deleterious(0.677) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PSKH1 5681 genome.wustl.edu 37 16 67961376 67961376 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006742.2 +1 validated p.R369H 1.000 89 0% 68 20.6% 15 33.3% probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_Kinase_like PSMB10 5699 genome.wustl.edu 37 16 67970425 67970425 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000435933 -1 known p.A17S 0.000 67 0% 63 22.2% 2 50% - - - NULL LCAT 3931 genome.wustl.edu 37 16 67977093 67977093 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000229.1 -1 reviewed p.Q59 0.999 124 0% 115 20.9% 4 0% - - - superfamily_alpha/beta-Hydrolases SLC12A4 6560 genome.wustl.edu 37 16 67984329 67984329 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005072.4 -1 validated p.V508I 1.000 109 0% 123 34.1% 18 27.7% possibly_damaging(0.895) tolerated(0.13) deleterious(0.605) HMMPfam_AA_permease SLC12A4 6560 genome.wustl.edu 37 16 67985807 67985807 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005072.4 -1 validated p.D351N 0.694 46 0% 55 25.5% 18 27.7% benign(0.001) tolerated(0.5) neutral(0.010) HMMPfam_AA_permease SLC12A4 6560 genome.wustl.edu 37 16 67986238 67986238 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005072.4 -1 validated p.T256S 1.000 580 0% 487 20.5% 6 33.3% benign(0.004) tolerated(0.14) neutral(0.249) HMMPfam_AA_permease DPEP3 64180 genome.wustl.edu 37 16 68014146 68014146 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022357.3 -1 reviewed p.L71 0.000 41 0% 30 23.3% 0 - - - - NULL DPEP2 64174 genome.wustl.edu 37 16 68023261 68023261 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022355.2 -1 validated p.F345 1.000 285 0% 283 20.5% 4 0% - - - HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases NFATC3 4775 genome.wustl.edu 37 16 68248260 68248260 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004555.2 +1 reviewed p.Q1045H 1.000 509 0.2% 282 21.3% 7 42.8% benign(0.03) deleterious(0) neutral(0.446) NULL ESRP2 80004 genome.wustl.edu 37 16 68265785 68265785 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024939.2 -1 validated p.A407T 1.000 39 0% 52 28.8% 34 50% benign(0.124) tolerated(0.09) neutral(0.306) HMMSmart_RRM,superfamily_SSF54928 PLA2G15 23659 genome.wustl.edu 37 16 68289682 68289682 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012320.3 +1 reviewed p.P172 1.000 89 0% 91 23.1% 9 44.4% - - - HMMPfam_LACT,superfamily_alpha/beta-Hydrolases SLC7A6 9057 genome.wustl.edu 37 16 68308853 68308853 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076785.1 +1 validated p.A75V 1.000 438 0% 539 10.2% 3 0% possibly_damaging(0.49) deleterious(0) deleterious(0.608) HMMPfam_AA_permease SLC7A6 9057 genome.wustl.edu 37 16 68308948 68308948 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076785.1 +1 validated p.K107E 1.000 330 0% 375 12.3% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_AA_permease SLC7A6 9057 genome.wustl.edu 37 16 68321745 68321745 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076785.1 +1 validated p.I207T 1.000 242 0% 163 17.8% 2 50% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_AA_permease PRMT7 54496 genome.wustl.edu 37 16 68358604 68358604 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019023.2 +1 validated p.G51C 1.000 180 0% 124 20.2% 19 5.2% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_S-adenosyl-L-methionine-dependent methyltransferases PRMT7 54496 genome.wustl.edu 37 16 68380160 68380160 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019023.2 +1 validated p.R390* 0.987 70 0% 63 28.6% 51 3.9% - - - superfamily_S-adenosyl-L-methionine-dependent methyltransferases SMPD3 55512 genome.wustl.edu 37 16 68405022 68405022 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018667.3 -1 validated p.A355T 1.000 67 0% 67 26.9% 0 - probably_damaging(0.996) tolerated(0.27) deleterious(0.495) NULL ZFP90 146198 genome.wustl.edu 37 16 68596948 68596948 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133458.2 +1 provisional p.D86E 0.983 267 0.4% 74 18.9% 2 0% benign(0.084) tolerated(0.07) neutral(0.325) NULL ZFP90 146198 genome.wustl.edu 37 16 68598277 68598277 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133458.2 +1 provisional p.E529D 0.974 206 0% 81 21% 9 55.5% benign(0.144) tolerated(0.08) neutral(0.312) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers HAS3 3038 genome.wustl.edu 37 16 69143815 69143815 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005329.2 +1 reviewed p.R173C 1.000 66 0% 66 24.2% 10 60% possibly_damaging(0.836) tolerated(0.17) neutral(0.379) superfamily_SSF53448 CHTF8 54921 genome.wustl.edu 37 16 69154333 69154333 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039690.3 -1 reviewed p.V121L 1.000 565 0% 465 21.9% 41 41.4% probably_damaging(0.99) tolerated(0.15) deleterious(0.682) NULL CIRH1A 84916 genome.wustl.edu 37 16 69184572 69184572 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032830.2 +1 reviewed p.R291C 0.998 205 0% 102 13.7% 71 26.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like CIRH1A 84916 genome.wustl.edu 37 16 69199374 69199374 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032830.2 +1 reviewed p.P593L 1.000 433 0% 256 13.7% 115 28.6% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL VPS4A 27183 genome.wustl.edu 37 16 69355028 69355028 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013245.2 +1 reviewed p.S309N 1.000 95 0% 99 28.3% 107 40.1% benign(0) tolerated(0.39) neutral(0.016) HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases COG8 84342 genome.wustl.edu 37 16 69366786 69366786 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032382.4 -1 reviewed e4-1 1.000 133 0% 149 20.1% 2 50% - - - - NIP7 51388 genome.wustl.edu 37 16 69374191 69374191 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016101.3 +1 validated p.R80W 1.000 225 0% 290 19.3% 43 39.5% benign(0.002) deleterious(0) neutral(0.445) superfamily_Pre-PUA domain NFAT5 10725 genome.wustl.edu 37 16 69726137 69726137 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138713.2 +1 reviewed p.G803 1.000 474 0% 274 21.5% 1 0% - - - NULL NQO1 1728 genome.wustl.edu 37 16 69746985 69746985 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000903.2 -1 reviewed p.M155I 1.000 140 0% 72 20.8% 110 42.7% benign(0.316) tolerated(0.06) neutral(0.421) HMMPfam_Flavodoxin_2,superfamily_Flavoproteins WWP2 11060 genome.wustl.edu 37 16 69963382 69963382 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007014.3 +1 reviewed p.Y422 1.000 77 0% 59 27.1% 20 25% - - - HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP CLEC18A 348174 genome.wustl.edu 37 16 69997477 69997477 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182619.2 +1 validated p.A435V 0.999 258 0% 334 9.9% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ENSG00000226232 0 genome.wustl.edu 37 16 70020282 70020282 + Splice_Site SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000437824 -1 known e2+2 0.046 85 0% 53 11.3% 1 100% - - - - PDXDC2P 283970 genome.wustl.edu 37 16 70072889 70072889 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000325845 -1 known e5-1 1.000 137 0% 80 23.7% 0 - - - - - PDPR 55066 genome.wustl.edu 37 16 70166201 70166201 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017990.3 +1 validated p.F332C 1.000 403 0% 219 12.3% 3 0% probably_damaging(0.987) tolerated(0.1) deleterious(0.723) HMMPfam_DAO,superfamily_SSF51905,superfamily_SSF54373 PDPR 55066 genome.wustl.edu 37 16 70177428 70177428 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017990.3 +1 validated p.A541T 1.000 208 0% 98 16.3% 3 33.3% probably_damaging(0.987) tolerated(0.06) deleterious(0.759) HMMPfam_GCV_T,superfamily_SSF103025 PDPR 55066 genome.wustl.edu 37 16 70190651 70190651 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017990.3 +1 validated p.R837W 1.000 324 0% 198 14.1% 8 37.5% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_GCV_T_C,superfamily_SSF101790 AARS 16 genome.wustl.edu 37 16 70316688 70316688 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001605.2 -1 reviewed e1-1 0.616 214 0% 181 28.7% 0 - - - - - DDX19B 11269 genome.wustl.edu 37 16 70363289 70363289 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007242.4 +1 reviewed p.K234N 1.000 301 0% 174 21.8% 53 26.4% benign(0.04) tolerated(0.27) neutral(0.036) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases ST3GAL2 6483 genome.wustl.edu 37 16 70429027 70429027 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006927.3 -1 reviewed p.L131M 1.000 175 0.6% 84 29.8% 11 27.2% possibly_damaging(0.922) tolerated(0.21) neutral(0.415) HMMPfam_Glyco_transf_29 FUK 197258 genome.wustl.edu 37 16 70501788 70501788 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145059.2 +1 reviewed e7-1 1.000 328 0% 291 20.3% 0 - - - - - COG4 25839 genome.wustl.edu 37 16 70543896 70543896 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015386.2 -1 validated p.L256P 0.018 347 0% 177 13% 26 30.7% benign(0.082) tolerated(0.1) neutral(0.292) HMMPfam_COG4,HMMSmart_SM00762 COG4 25839 genome.wustl.edu 37 16 70546141 70546141 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015386.2 -1 validated e5+1 1.000 186 0% 78 25.6% 2 100% - - - - SF3B3 23450 genome.wustl.edu 37 16 70594435 70594435 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012426.4 +1 reviewed p.R692W 1.000 269 0% 89 33.7% 160 46.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SF3B3 23450 genome.wustl.edu 37 16 70604029 70604029 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012426.4 +1 reviewed p.L1129I 1.000 167 0% 65 16.9% 364 39.5% possibly_damaging(0.688) deleterious(0.01) deleterious(0.651) HMMPfam_CPSF_A IL34 146433 genome.wustl.edu 37 16 70680861 70680861 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152456.2 +1 validated p.G4D 0.980 52 0% 56 26.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL VAC14 55697 genome.wustl.edu 37 16 70834740 70834740 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018052.3 -1 validated p.L22 1.000 74 0% 152 21.1% 14 57.1% - - - superfamily_ARM-type_fold HYDIN 54768 genome.wustl.edu 37 16 70841787 70841787 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.A5020D 0.592 163 0% 121 14.9% 10 50% benign(0.289) deleterious(0.01) deleterious(0.495) NULL HYDIN 54768 genome.wustl.edu 37 16 70913535 70913535 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.F3446S 1.000 314 0% 97 17.5% 0 - benign(0.045) deleterious(0) neutral(0.447) NULL HYDIN 54768 genome.wustl.edu 37 16 70941379 70941379 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.Q2803 1.000 418 0% 158 13.3% 0 - - - - NULL HYDIN 54768 genome.wustl.edu 37 16 70972586 70972586 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.A2308V 0.994 432 0% 316 10.4% 0 - possibly_damaging(0.888) deleterious(0.04) deleterious(0.696) superfamily_P-loop containing nucleoside triphosphate hydrolases HYDIN 54768 genome.wustl.edu 37 16 70998757 70998757 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.L1887M 0.999 545 0.2% 135 16.3% 0 - probably_damaging(0.962) deleterious(0.04) deleterious(0.754) NULL HYDIN 54768 genome.wustl.edu 37 16 71015408 71015408 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.V1465I 0.344 634 0% 218 17% 0 - benign(0.051) tolerated(0.41) neutral(0.018) NULL HYDIN 54768 genome.wustl.edu 37 16 71196561 71196561 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032821.2 -1 validated p.R197* 0.998 353 0% 181 21.5% 0 - - - - superfamily_PapD-like FTSJD1 55783 genome.wustl.edu 37 16 71319144 71319144 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099642.1 -1 validated p.A227V 0.472 273 0% 234 23.5% 10 40% benign(0.08) tolerated(0.28) neutral(0.037) HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases ZNF23 7571 genome.wustl.edu 37 16 71482992 71482992 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145911.1 -1 provisional p.D312 0.844 223 0% 186 25.8% 5 60% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF23 7571 genome.wustl.edu 37 16 71483083 71483083 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145911.1 -1 provisional p.C282Y 1.000 228 0% 203 24.1% 8 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CHST4 10164 genome.wustl.edu 37 16 71571460 71571460 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005769.2 +1 reviewed p.V294M 0.017 119 0% 59 23.7% 4 25% possibly_damaging(0.558) deleterious(0.04) deleterious(0.539) superfamily_SSF52540 CHST4 10164 genome.wustl.edu 37 16 71571477 71571477 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005769.2 +1 reviewed p.L299 0.998 127 0% 62 17.7% 5 60% - - - superfamily_SSF52540 MARVELD3 91862 genome.wustl.edu 37 16 71668504 71668504 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052858.3 +1 validated p.P335H 0.005 248 0% 171 26.9% 6 50% possibly_damaging(0.92) deleterious(0.05) deleterious(0.716) HMMPfam_MARVEL PHLPP2 23035 genome.wustl.edu 37 16 71683605 71683605 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015020.2 -1 validated p.G1054* 1.000 87 0% 45 15.6% 3 33.3% - - - NULL PHLPP2 23035 genome.wustl.edu 37 16 71689173 71689173 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015020.2 -1 validated p.F852C 1.000 365 0% 225 26.2% 0 - benign(0.054) tolerated(0.08) neutral(0.303) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain PHLPP2 23035 genome.wustl.edu 37 16 71690487 71690487 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015020.2 -1 validated p.G793W 1.000 804 0.1% 463 22.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain PHLPP2 23035 genome.wustl.edu 37 16 71724553 71724553 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015020.2 -1 validated p.R160C 1.000 195 0% 122 16.4% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_PH domain-like AP1G1 164 genome.wustl.edu 37 16 71784210 71784210 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030007.1 -1 reviewed p.A440V 1.000 253 0% 101 14.9% 30 43.3% benign(0.001) tolerated(1) - HMMPfam_Adaptin_N,superfamily_ARM repeat AP1G1 164 genome.wustl.edu 37 16 71789949 71789949 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030007.1 -1 reviewed p.A404V 1.000 224 0% 133 30.8% 13 53.8% benign(0.066) tolerated(0.4) neutral(0.021) HMMPfam_Adaptin_N,superfamily_ARM repeat ATXN1L 342371 genome.wustl.edu 37 16 71883970 71883970 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001137675.2 +1 validated p.T109 0.782 239 0% 245 23.3% 4 50% - - - NULL PKD1L3 342372 genome.wustl.edu 37 16 71984118 71984118 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000335106 -1 known p.Q1094H 0.001 485 0% 232 28.9% 0 - - - - NULL HP 3240 genome.wustl.edu 37 16 72094425 72094425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005143.3 +1 reviewed p.R286Q 0.975 333 0.6% 63 9.5% 6 0% benign(0.007) tolerated(0.4) neutral(0.016) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys PMFBP1 83449 genome.wustl.edu 37 16 72163133 72163133 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031293.2 -1 validated e12-1 0.833 351 0% 168 13.1% 0 - - - - - ZFHX3 463 genome.wustl.edu 37 16 72828006 72828006 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006885.3 -1 reviewed p.T2859P 0.979 632 0% 633 22.9% 7 57.1% possibly_damaging(0.928) - - NULL ZFHX3 463 genome.wustl.edu 37 16 72829540 72829540 + Missense_Mutation SNP C C A rs4614733 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006885.3 -1 reviewed p.Q2347H 1.000 136 0% 170 14.7% 2 50% unknown(0) - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZFHX3 463 genome.wustl.edu 37 16 72991359 72991359 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006885.3 -1 reviewed p.A896T 0.874 127 0.8% 149 24.2% 1 0% unknown(0) - - NULL ZFHX3 463 genome.wustl.edu 37 16 72991395 72991395 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006885.3 -1 reviewed p.A884T 0.996 217 0% 233 15.5% 2 50% unknown(0) - - NULL ENSG00000226351 0 genome.wustl.edu 37 16 73127110 73127110 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433532 +1 known p.R52M 0.005 163 0% 83 22.9% 0 - - - - NULL NPIPL2 440348 genome.wustl.edu 37 16 74415578 74415578 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344099.1 +1 model p.F77L 0.005 119 0% 89 16.9% 0 - benign(0) tolerated(1) - HMMPfam_NPIP NPIPL2 440348 genome.wustl.edu 37 16 74419297 74419297 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344099.1 +1 model p.V103I 0.045 2052 0% 1050 10% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_NPIP GLG1 2734 genome.wustl.edu 37 16 74490564 74490564 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012201.5 -1 validated p.W1119G 1.000 375 0.5% 264 23.9% 165 35.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL WDR59 79726 genome.wustl.edu 37 16 74923615 74923615 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030581.3 -1 validated p.Q727H 1.000 139 0% 48 20.8% 18 33.3% benign(0.001) tolerated(0.21) neutral(0.044) NULL WDR59 79726 genome.wustl.edu 37 16 74943481 74943481 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030581.3 -1 validated p.A520 0.756 215 0% 95 17.9% 27 44.4% - - - NULL WDR59 79726 genome.wustl.edu 37 16 74950046 74950046 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030581.3 -1 validated p.A360T 0.140 562 0% 216 22.2% 35 28.5% benign(0.007) tolerated(0.61) neutral(0.004) superfamily_WD40 repeat-like ZNRF1 84937 genome.wustl.edu 37 16 75138748 75138748 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032268.4 +1 reviewed p.T196M 1.000 118 0% 108 18.5% 160 38.1% probably_damaging(0.997) deleterious(0.02) deleterious(0.849) HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box BCAR1 9564 genome.wustl.edu 37 16 75276618 75276618 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014567.3 -1 validated p.Y128C 1.000 411 0% 349 23.5% 27 62.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CFDP1 10428 genome.wustl.edu 37 16 75445778 75445778 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006324.2 -1 validated p.E159* 0.996 692 0% 379 23% 53 5.6% - - - NULL CHST6 4166 genome.wustl.edu 37 16 75512725 75512725 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021615.4 -1 reviewed p.R334 0.805 47 0% 36 16.7% 5 60% - - - HMMPfam_Sulfotransfer_1,superfamily_SSF52540 KARS 3735 genome.wustl.edu 37 16 75669863 75669863 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130089.1 -1 reviewed p.L234M 0.997 354 0% 216 19.4% 232 37% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB CNTNAP4 85445 genome.wustl.edu 37 16 76587219 76587219 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138994.3 +1 validated p.A1088V 0.518 31 0% 20 25% 0 - benign(0.005) deleterious(0.03) neutral(0.364) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 MON1B 22879 genome.wustl.edu 37 16 77227662 77227662 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014940.2 +1 validated p.A155S 0.992 102 0% 118 28% 11 36.3% benign(0.001) tolerated(1) - HMMPfam_Mon1 ADAMTS18 170692 genome.wustl.edu 37 16 77325281 77325281 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199355.2 -1 reviewed p.R1095I 1.000 296 0% 113 24.8% 0 - probably_damaging(0.976) tolerated(0.14) deleterious(0.667) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat MAF 4094 genome.wustl.edu 37 16 79632690 79632690 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005360.4 -1 reviewed p.E370 1.000 97 0% 109 29.4% 19 0% - - - NULL CENPN 55839 genome.wustl.edu 37 16 81053857 81053857 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100625.1 +1 validated p.R169 0.000 162 0% 113 14.2% 38 42.1% - - - HMMPfam_CHL4 CENPN 55839 genome.wustl.edu 37 16 81060200 81060200 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001100625.1 +1 validated p.F256Y 1.000 355 0% 324 21.9% 8 37.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CHL4 ATMIN 23300 genome.wustl.edu 37 16 81078192 81078192 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015251.2 +1 validated p.L697I 1.000 283 0% 200 19.5% 29 31% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL GCSH 2653 genome.wustl.edu 37 16 81118158 81118158 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004483.4 -1 reviewed p.L112I 1.000 146 0% 143 21.7% 36 30.5% possibly_damaging(0.614) tolerated(0.34) neutral(0.236) HMMPfam_GCV_H,PatternScan_LIPOYL,superfamily_Single hybrid motif PKD1L2 114780 genome.wustl.edu 37 16 81185468 81185468 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052892.3 -1 reviewed p.Y1486C 1.000 174 0% 109 21.1% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain) PKD1L2 114780 genome.wustl.edu 37 16 81187676 81187676 + Silent SNP C C T rs148002235 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052892.3 -1 reviewed p.P1432 0.551 334 0% 157 24.2% 1 0% - - - HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain) PKD1L2 114780 genome.wustl.edu 37 16 81190550 81190550 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052892.3 -1 reviewed p.V1347I 1.000 114 0% 83 22.9% 1 0% probably_damaging(0.979) tolerated(0.12) deleterious(0.682) NULL PKD1L2 114780 genome.wustl.edu 37 16 81190619 81190619 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052892.3 -1 reviewed p.V1324M 1.000 109 0% 64 14.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00303 PKD1L2 114780 genome.wustl.edu 37 16 81213366 81213366 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076780.1 -1 reviewed p.R715I 0.078 162 0% 102 15.7% 0 - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) NULL PKD1L2 114780 genome.wustl.edu 37 16 81222486 81222486 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076780.1 -1 reviewed p.G597R 1.000 183 0.5% 140 27.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PKD1L2 114780 genome.wustl.edu 37 16 81232529 81232529 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076780.1 -1 reviewed p.I427 0.086 579 0% 253 20.9% 0 - - - - NULL PKD1L2 114780 genome.wustl.edu 37 16 81249972 81249972 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076780.1 -1 reviewed p.S114I 0.998 71 0% 38 18.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like PKD1L2 114780 genome.wustl.edu 37 16 81253868 81253868 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001076780.1 -1 reviewed p.R36S 0.899 123 0% 71 25.4% 0 - possibly_damaging(0.827) deleterious(0.01) deleterious(0.720) HMMSmart_SM00034,superfamily_C-type lectin-like BCMO1 53630 genome.wustl.edu 37 16 81298346 81298346 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017429.2 +1 reviewed p.K191 1.000 350 0% 127 20.5% 15 20% - - - HMMPfam_RPE65 GAN 8139 genome.wustl.edu 37 16 81390393 81390393 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022041.3 +1 reviewed p.H213N 1.000 185 0% 154 18.8% 0 - probably_damaging(0.991) tolerated(0.09) deleterious(0.740) HMMPfam_BACK GAN 8139 genome.wustl.edu 37 16 81390524 81390524 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022041.3 +1 reviewed p.P256 0.053 120 0% 83 14.5% 0 - - - - superfamily_Gal_oxid_central GAN 8139 genome.wustl.edu 37 16 81411106 81411106 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022041.3 +1 reviewed p.R567C 1.000 288 0% 101 15.8% 2 50% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_Kelch CMIP 80790 genome.wustl.edu 37 16 81727074 81727074 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198390.2 +1 validated p.A504 0.005 107 0% 114 29.8% 22 31.8% - - - NULL PLCG2 5336 genome.wustl.edu 37 16 81939032 81939032 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002661.2 +1 validated p.D463N 0.998 140 0% 80 18.8% 4 0% benign(0.344) tolerated(0.5) neutral(0.118) superfamily_PLC-like_Pdiesterase_TIM-brl PLCG2 5336 genome.wustl.edu 37 16 81942071 81942071 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002661.2 +1 validated p.K536N 0.977 206 0% 194 22.2% 13 7.6% benign(0.328) deleterious(0) deleterious(0.547) HMMPfam_SH2,HMMSmart_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550 PLCG2 5336 genome.wustl.edu 37 16 81944326 81944326 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002661.2 +1 validated e17+1 1.000 83 1.2% 33 30.3% 0 - - - - - CDH13 1012 genome.wustl.edu 37 16 82660742 82660742 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001257.3 +1 reviewed p.Q15 1.000 59 0% 71 23.9% 0 - unknown(0) - - NULL CDH13 1012 genome.wustl.edu 37 16 83065694 83065694 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001257.3 +1 reviewed p.G79 0.000 190 0% 44 18.2% 0 - - - - HMMPfam_Cadherin_pro,superfamily_Cadherin OSGIN1 29948 genome.wustl.edu 37 16 83999343 83999343 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013370.3 +1 validated p.V472I 0.003 165 0% 250 16.8% 5 40% benign(0.089) tolerated(0.25) neutral(0.043) superfamily_FAD/NAD(P)-binding domain SLC38A8 146167 genome.wustl.edu 37 16 84050856 84050856 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080442.1 -1 provisional p.S281F 1.000 65 0% 68 26.5% 0 - probably_damaging(0.954) deleterious(0.04) deleterious(0.746) HMMPfam_Aa_trans MBTPS1 8720 genome.wustl.edu 37 16 84092952 84092952 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003791.2 -1 reviewed p.R929H 1.000 91 0% 103 25.2% 110 34.5% benign(0) tolerated(1) - NULL HSDL1 83693 genome.wustl.edu 37 16 84163765 84163765 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031463.4 -1 validated p.Q164H 0.742 222 0% 213 20.2% 15 40% probably_damaging(0.961) tolerated(0.15) deleterious(0.645) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains DNAAF1 123872 genome.wustl.edu 37 16 84182641 84182641 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178452.4 +1 reviewed p.G52S 0.000 266 0% 228 21.1% 2 100% benign(0.009) tolerated(0.15) neutral(0.241) NULL DNAAF1 123872 genome.wustl.edu 37 16 84183883 84183883 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178452.4 +1 reviewed p.L96 0.998 330 0% 320 19.4% 0 - - - - NULL DNAAF1 123872 genome.wustl.edu 37 16 84188303 84188303 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178452.4 +1 reviewed p.L158 0.998 284 0% 176 15.3% 1 0% - - - HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1 DNAAF1 123872 genome.wustl.edu 37 16 84199561 84199561 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439133 +1 known p.R94C 0.000 264 0% 121 25.6% 0 - - - - NULL DNAAF1 123872 genome.wustl.edu 37 16 84209692 84209692 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178452.4 +1 reviewed p.R618W 0.000 130 0% 137 26.3% 4 50% possibly_damaging(0.922) deleterious(0) deleterious(0.816) NULL TAF1C 9013 genome.wustl.edu 37 16 84215831 84215831 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005679.2 -1 reviewed p.A233D 0.000 20 0% 24 20.8% 12 25% possibly_damaging(0.504) tolerated(0.21) neutral(0.213) NULL TAF1C 9013 genome.wustl.edu 37 16 84216894 84216894 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005679.2 -1 reviewed p.L122 0.998 154 0% 208 15.4% 11 18.1% - - - NULL ADAD2 161931 genome.wustl.edu 37 16 84228181 84228181 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139174.3 +1 validated p.E256D 0.998 62 0% 108 22.2% 0 - benign(0.381) tolerated(0.28) neutral(0.153) NULL ADAD2 161931 genome.wustl.edu 37 16 84229294 84229294 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139174.3 +1 validated p.R430H 0.671 30 3.3% 25 24% 1 0% benign(0.002) tolerated(0.4) neutral(0.016) HMMPfam_A_deamin KCNG4 93107 genome.wustl.edu 37 16 84256245 84256245 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172347.1 -1 reviewed p.V380M 1.000 10 0.000 9 0.556 0 - probably_damaging(0.987) tolerated(0.32) neutral(0.461) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels COTL1 23406 genome.wustl.edu 37 16 84600469 84600469 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021149.2 -1 reviewed p.Y137 0.987 164 0% 143 24.5% 257 5% - - - superfamily_Actin depolymerizing proteins KLHL36 79786 genome.wustl.edu 37 16 84684524 84684524 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024731.2 +1 provisional p.S17 1.000 279 0% 331 20.5% 5 0% - - - NULL KLHL36 79786 genome.wustl.edu 37 16 84690858 84690858 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024731.2 +1 provisional p.L149M 1.000 72 0% 76 28.9% 21 33.3% possibly_damaging(0.912) deleterious(0.02) deleterious(0.746) HMMPfam_BACK KLHL36 79786 genome.wustl.edu 37 16 84693479 84693479 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024731.2 +1 provisional p.Y417 0.971 152 0% 204 16.7% 12 8.3% - - - HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain USP10 9100 genome.wustl.edu 37 16 84778963 84778963 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005153.2 +1 reviewed p.S292 0.916 83 0% 51 19.6% 48 50% - - - NULL CRISPLD2 83716 genome.wustl.edu 37 16 84872320 84872320 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031476.3 +1 validated p.Q73H 0.000 62 0% 48 35.4% 0 - benign(0.072) deleterious(0) neutral(0.450) HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like CRISPLD2 83716 genome.wustl.edu 37 16 84940324 84940324 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000448503 +1 known p.C107 0.016 114 0% 114 21.1% 2 0% - - - NULL ZDHHC7 55625 genome.wustl.edu 37 16 85015574 85015574 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145548.1 -1 validated p.T151 0.732 308 0% 270 20% 25 64% - - - NULL ZDHHC7 55625 genome.wustl.edu 37 16 85022377 85022377 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145548.1 -1 validated p.L140I 0.000 117 0% 94 26.6% 4 50% benign(0.001) tolerated(0.36) neutral(0.020) NULL FAM92B 339145 genome.wustl.edu 37 16 85138999 85138999 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198491.1 -1 predicted p.S157 1.000 54 0% 63 28.6% 4 25% - - - HMMPfam_DUF1208 FAM92B 339145 genome.wustl.edu 37 16 85143993 85143993 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198491.1 -1 predicted p.L32 1.000 66 0% 61 14.8% 1 0% - - - HMMPfam_DUF1208 C16orf74 404550 genome.wustl.edu 37 16 85743855 85743855 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206967.2 -1 validated p.N29 0.892 36 0% 24 29.2% 4 25% - - - NULL MIR1910 100302261 genome.wustl.edu 37 16 85775278 85775278 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000410258 -1 known NULL 0.000 163 0% 154 24% 0 - - - - - IRF8 3394 genome.wustl.edu 37 16 85953808 85953808 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002163.2 +1 reviewed p.R361H 1.000 157 0% 189 23.8% 36 0% benign(0.32) tolerated(0.15) neutral(0.341) superfamily_SMAD_FHA,HMMPfam_IRF-3 MTHFSD 64779 genome.wustl.edu 37 16 86585719 86585719 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022764.2 -1 validated p.L52I 1.000 363 0% 345 20.6% 2 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_5-FTHF_cyc-lig,superfamily_SSF100950 ZCCHC14 23174 genome.wustl.edu 37 16 87445352 87445352 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015144.2 -1 validated p.S855I 0.000 50 0% 56 14.3% 10 30% possibly_damaging(0.928) deleterious(0.05) deleterious(0.721) NULL ZCCHC14 23174 genome.wustl.edu 37 16 87446105 87446105 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015144.2 -1 validated p.R604M 1.000 49 0% 45 31.1% 6 33.3% unknown(0) tolerated(0.11) - NULL JPH3 57338 genome.wustl.edu 37 16 87678480 87678480 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020655.2 +1 reviewed p.K333N 1.000 76 0% 74 20.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain BANP 54971 genome.wustl.edu 37 16 88052090 88052090 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_079837.2 +1 reviewed p.R199C 1.000 77 0% 128 25.8% 30 46.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF469 84627 genome.wustl.edu 37 16 88498114 88498114 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127464.1 +1 reviewed p.S1384R 0.001 17 0% 37 16.2% 0 - benign(0.156) deleterious(0) neutral(0.459) NULL ZNF469 84627 genome.wustl.edu 37 16 88498350 88498350 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127464.1 +1 reviewed p.T1463M 0.000 150 0.7% 174 14.9% 1 0% probably_damaging(0.999) tolerated(0.07) deleterious(0.809) NULL ZNF469 84627 genome.wustl.edu 37 16 88502446 88502446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127464.1 +1 reviewed p.E2828D 0.000 29 0% 42 11.9% 3 0% benign(0.105) deleterious(0) neutral(0.453) NULL ZC3H18 124245 genome.wustl.edu 37 16 88643760 88643760 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144604.3 +1 validated p.K77E 1.000 106 0% 118 17.8% 20 50% unknown(0) tolerated(0.53) - NULL CYBA 1535 genome.wustl.edu 37 16 88713578 88713578 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000101.2 -1 reviewed p.A45V 0.987 59 0% 91 18.7% 1483 48.8% probably_damaging(0.999) tolerated(0.1) deleterious(0.777) HMMPfam_Cytochrom_B558a PIEZO1 9780 genome.wustl.edu 37 16 88786833 88786833 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451779 -1 known p.V1507A 0.998 86 1.2% 95 17.9% 20 35% probably_damaging(0.961) deleterious(0.01) deleterious(0.810) NULL PIEZO1 9780 genome.wustl.edu 37 16 88787054 88787054 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451779 -1 known p.G1461E 0.012 146 0% 219 24.7% 5 20% benign(0.053) tolerated(1) neutral(0.004) NULL PIEZO1 9780 genome.wustl.edu 37 16 88787598 88787598 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451779 -1 known p.A1419S 0.000 40 0% 66 27.3% 10 10% benign(0.001) tolerated(1) - NULL PIEZO1 9780 genome.wustl.edu 37 16 88787766 88787766 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451779 -1 known p.G1363R 0.027 75 0% 77 22.1% 8 12.5% benign(0.008) tolerated(0.52) neutral(0.009) NULL PIEZO1 9780 genome.wustl.edu 37 16 88798796 88798796 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451779 -1 known p.L517I 1.000 32 0% 19 31.6% 0 - benign(0.039) tolerated(1) neutral(0.002) NULL PIEZO1 9780 genome.wustl.edu 37 16 88801194 88801194 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451779 -1 known p.L158M 1.000 46 0% 33 21.2% 6 0% possibly_damaging(0.885) tolerated(0.23) neutral(0.387) NULL LOC100289580 100289580 genome.wustl.edu 37 16 88805225 88805225 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344125.1 +1 model p.S141I 0.000 6 0.000 16 0.438 1 100% - - - NULL TRAPPC2L 51693 genome.wustl.edu 37 16 88925065 88925065 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016209.3 +1 validated p.N24 0.170 144 0% 135 25.2% 215 42.7% - - - HMMPfam_Sedlin_N,superfamily_SNARE-like ACSF3 197322 genome.wustl.edu 37 16 89211713 89211713 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127214.1 +1 validated p.R469* 0.996 286 0.3% 275 21.5% 45 6.6% - - - HMMPfam_AMP-binding,superfamily_SSF56801 CDH15 1013 genome.wustl.edu 37 16 89254647 89254647 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004933.2 +1 reviewed p.I311S 0.359 48 2.1% 55 30.9% 0 - probably_damaging(0.957) deleterious(0) deleterious(0.845) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH15 1013 genome.wustl.edu 37 16 89256690 89256690 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004933.2 +1 reviewed p.V340M 0.824 49 0% 41 14.6% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin ZNF778 197320 genome.wustl.edu 37 16 89289664 89289664 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182531.2 +1 validated p.E73* 0.993 396 0% 312 20.5% 1 0% - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF778 197320 genome.wustl.edu 37 16 89294208 89294208 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182531.2 +1 validated p.P476 0.718 195 0% 136 27.9% 1 100% - - - superfamily_C2H2 and C2HC zinc fingers ZNF778 197320 genome.wustl.edu 37 16 89294514 89294514 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182531.2 +1 validated p.E578D 0.001 266 0% 163 27.6% 5 20% benign(0.002) tolerated(0.61) neutral(0.004) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ANKRD11 29123 genome.wustl.edu 37 16 89348321 89348321 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013275.4 -1 validated p.G1543 0.000 336 0% 341 17.6% 20 50% - - - superfamily_Ankyrin repeat ANKRD11 29123 genome.wustl.edu 37 16 89355077 89355077 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013275.4 -1 validated p.G201 1.000 114 0.9% 112 28.6% 18 16.6% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat SPG7 6687 genome.wustl.edu 37 16 89590428 89590428 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003119.2 +1 reviewed p.R131S 0.034 82 0% 103 30.1% 31 41.9% unknown(0) deleterious(0.04) - NULL SPG7 6687 genome.wustl.edu 37 16 89598349 89598349 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003119.2 +1 reviewed p.P342L 1.000 86 0% 84 20.2% 29 34.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases CPNE7 27132 genome.wustl.edu 37 16 89644027 89644027 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014427.4 +1 reviewed p.E85D 1.000 161 0% 244 11.9% 2 100% possibly_damaging(0.948) tolerated(0.05) deleterious(0.736) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) CPNE7 27132 genome.wustl.edu 37 16 89644035 89644035 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014427.4 +1 reviewed p.R88M 1.000 161 0% 219 24.2% 2 0% possibly_damaging(0.904) deleterious(0) deleterious(0.803) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) DPEP1 1800 genome.wustl.edu 37 16 89704063 89704063 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128141.1 +1 validated p.V293M 0.934 384 0% 278 19.1% 0 - probably_damaging(0.988) deleterious(0.01) deleterious(0.843) HMMPfam_Peptidase_M19,superfamily_SSF51556 C16orf7 9605 genome.wustl.edu 37 16 89774905 89774905 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004913.2 -1 validated p.V578M 1.000 28 3.6% 59 25.4% 18 11.1% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_VPS9,superfamily_SSF109993 C16orf7 9605 genome.wustl.edu 37 16 89776309 89776309 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004913.2 -1 validated p.L422M 1.000 81 0% 73 24.7% 14 64.2% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) superfamily_SSF109993 FANCA 2175 genome.wustl.edu 37 16 89828363 89828363 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000135.2 -1 reviewed p.T949N 0.076 353 0.3% 256 19.1% 13 30.7% possibly_damaging(0.912) tolerated(0.09) deleterious(0.660) NULL FANCA 2175 genome.wustl.edu 37 16 89833560 89833560 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000135.2 -1 reviewed p.L864I 0.967 356 0% 215 26.5% 10 30% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) NULL SPIRE2 84501 genome.wustl.edu 37 16 89927195 89927195 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032451.1 +1 validated p.L523 1.000 50 0% 86 22.1% 10 30% - - - NULL SPIRE2 84501 genome.wustl.edu 37 16 89936662 89936662 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032451.1 +1 validated p.R709 0.969 167 0% 134 25.4% 27 66.6% - - - NULL TCF25 22980 genome.wustl.edu 37 16 89977513 89977513 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014972.2 +1 validated p.A633D 0.300 44 0% 49 24.5% 143 32.8% possibly_damaging(0.625) tolerated(0.32) neutral(0.242) NULL TUBB3 10381 genome.wustl.edu 37 16 90001817 90001817 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006086.2 +1 validated p.R320C 1.000 114 0.9% 136 16.2% 57 31.5% probably_damaging(0.97) deleterious(0) deleterious(0.857) superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C LOC100289615 100289615 genome.wustl.edu 37 16 90023867 90023867 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344126.1 -1 model p.L435M 0.000 22 0% 30 30% 0 - - - - NULL DEF8 54849 genome.wustl.edu 37 16 90028254 90028254 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207514.1 +1 validated p.W324* 1.000 57 0% 65 23.1% 4 25% - - - NULL LOC100289615 100289615 genome.wustl.edu 37 16 90030548 90030548 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344126.1 -1 model p.L197 0.000 51 0% 44 11.4% 0 - - - - NULL LOC100289615 100289615 genome.wustl.edu 37 16 90030838 90030838 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344126.1 -1 model e2+1 0.000 53 0% 80 17.5% 1 100% - - - - CENPBD1 92806 genome.wustl.edu 37 16 90037961 90037961 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145039.2 -1 validated p.R124C 0.003 276 0.4% 300 20.3% 9 44.4% probably_damaging(0.988) tolerated(0.13) deleterious(0.690) superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind RNMTL1 55178 genome.wustl.edu 37 17 685641 685641 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018146.2 +1 provisional p.A8V 0.000 37 0% 36 16.7% 14 7.1% benign(0) tolerated(1) - NULL RNMTL1 55178 genome.wustl.edu 37 17 694851 694851 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018146.2 +1 provisional p.L269M 0.940 187 0% 189 21.2% 32 40.6% benign(0.165) tolerated(0.06) neutral(0.338) HMMPfam_SpoU_methylase,superfamily_SSF75217 MYO1C 4641 genome.wustl.edu 37 17 1373957 1373957 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080779.1 -1 reviewed p.G747C 1.000 71 0% 75 29.3% 138 34% benign(0.35) deleterious(0.02) deleterious(0.494) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases INPP5K 51763 genome.wustl.edu 37 17 1399386 1399386 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016532.3 -1 reviewed p.R420C 0.061 126 0% 144 21.5% 112 41% possibly_damaging(0.833) tolerated(0.07) deleterious(0.637) NULL INPP5K 51763 genome.wustl.edu 37 17 1401329 1401329 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016532.3 -1 reviewed p.P288 0.000 74 0% 79 27.8% 88 43.1% - - - HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like SLC43A2 124935 genome.wustl.edu 37 17 1478927 1478927 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152346.1 -1 provisional p.G561S 1.000 82 0% 87 27.6% 14 7.1% possibly_damaging(0.822) tolerated(0.12) deleterious(0.572) NULL SCARF1 8578 genome.wustl.edu 37 17 1540138 1540138 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003693.2 -1 reviewed p.D500N 1.000 73 0% 85 21.2% 9 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRPF8 10594 genome.wustl.edu 37 17 1557250 1557250 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006445.3 -1 reviewed p.I2016 1.000 427 0% 366 17.8% 190 34.7% - - - NULL PRPF8 10594 genome.wustl.edu 37 17 1578603 1578603 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006445.3 -1 reviewed p.T968M 1.000 282 0.4% 215 26% 17 35.2% possibly_damaging(0.629) tolerated(0.06) deleterious(0.542) NULL WDR81 124997 genome.wustl.edu 37 17 1630734 1630734 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409644 +1 known p.Q827 0.999 31 0% 33 18.2% 7 42.8% - - - superfamily_WD40 repeat-like WDR81 124997 genome.wustl.edu 37 17 1637429 1637429 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000409644 +1 known p.V1700I 0.785 23 0% 21 28.6% 20 30% benign(0.014) tolerated(0.65) neutral(0.004) HMMSmart_SM00320,superfamily_WD40 repeat-like SERPINF2 5345 genome.wustl.edu 37 17 1650427 1650427 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000934.3 +1 reviewed p.R161Q 0.293 18 0% 19 21.1% 0 - benign(0.429) tolerated(0.19) neutral(0.189) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINF2 5345 genome.wustl.edu 37 17 1651969 1651969 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000934.3 +1 reviewed p.V265M 0.999 89 0% 98 15.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINF1 5176 genome.wustl.edu 37 17 1680659 1680659 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002615.4 +1 validated p.Q392H 0.642 201 0% 168 11.3% 55 0% benign(0.002) tolerated(0.33) neutral(0.024) HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins RPA1 6117 genome.wustl.edu 37 17 1792103 1792103 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002945.3 +1 validated p.C503 0.992 197 0% 96 15.6% 119 36.9% - - - HMMPfam_Rep_fac-A_C,superfamily_Nucleic acid-binding proteins KIAA0664 23277 genome.wustl.edu 37 17 2598206 2598206 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015229.3 -1 validated p.L894I 1.000 84 0% 176 26.7% 50 48% probably_damaging(1) tolerated(0.12) deleterious(0.760) NULL KIAA0664 23277 genome.wustl.edu 37 17 2603721 2603721 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015229.3 -1 validated p.R369 1.000 54 0% 93 28% 36 41.6% - - - NULL RAP1GAP2 23108 genome.wustl.edu 37 17 2894657 2894657 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015085.4 +1 reviewed p.L294 0.214 400 0% 233 21.9% 7 85.7% - - - HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145) OR1D4 653166 genome.wustl.edu 37 17 2966546 2966546 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003552.2 -1 provisional p.A137V 0.998 311 0.3% 104 19.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR3A2 4995 genome.wustl.edu 37 17 3181804 3181804 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002551.3 -1 validated p.S142 0.003 349 0% 151 16.6% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR1E2 8388 genome.wustl.edu 37 17 3336673 3336673 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003554.1 -1 provisional p.A155T 0.022 217 0% 181 23.8% 0 - benign(0) tolerated(0.33) neutral(0.024) HMMPfam_7tm_1,superfamily_SSF81321 TRPV3 162514 genome.wustl.edu 37 17 3436047 3436047 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145068.2 -1 reviewed p.M323I 1.000 185 0% 164 20.7% 0 - benign(0.001) tolerated(0.41) neutral(0.015) superfamily_Ankyrin repeat CTNS 1497 genome.wustl.edu 37 17 3560044 3560044 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031681.2 +1 reviewed p.A212 0.002 120 0% 107 27.1% 21 52.3% - - - NULL GSG2 83903 genome.wustl.edu 37 17 3629234 3629234 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031965.2 +1 validated p.L669I 1.000 310 0% 230 20.9% 14 57.1% benign(0.262) tolerated(0.12) neutral(0.288) HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ITGAE 3682 genome.wustl.edu 37 17 3659187 3659187 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002208.4 -1 reviewed p.T392 0.000 133 0% 144 21.5% 20 0% - - - superfamily_SSF69318 C17orf85 55421 genome.wustl.edu 37 17 3717771 3717771 + Missense_Mutation SNP C C T rs184111975 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114118.1 -1 provisional p.R491H 1.000 183 0% 135 20% 19 52.6% possibly_damaging(0.646) deleterious(0.04) deleterious(0.576) NULL C17orf85 55421 genome.wustl.edu 37 17 3724615 3724615 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114118.1 -1 provisional p.R310W 1.000 199 0% 145 35.2% 9 55.5% benign(0) deleterious(0) neutral(0.445) NULL C17orf85 55421 genome.wustl.edu 37 17 3732600 3732600 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114118.1 -1 provisional p.D140Y 1.000 482 0% 292 21.6% 4 50% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_DUF2414 CAMKK1 84254 genome.wustl.edu 37 17 3783646 3783646 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172207.2 -1 reviewed p.E302K 1.000 56 0% 62 24.2% 1 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase P2RX1 5023 genome.wustl.edu 37 17 3808550 3808550 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002558.2 -1 reviewed p.Q83H 1.000 44 0% 31 16.1% 0 - benign(0.01) tolerated(0.12) neutral(0.261) HMMPfam_P2X_receptor ATP2A3 489 genome.wustl.edu 37 17 3832631 3832631 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174953.1 -1 reviewed p.P951 0.998 32 0% 27 25.9% 32 0% - - - HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M ATP2A3 489 genome.wustl.edu 37 17 3846705 3846705 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174953.1 -1 reviewed p.R467* 1.000 53 0% 82 17.1% 21 4.7% - - - HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M ATP2A3 489 genome.wustl.edu 37 17 3853989 3853989 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174953.1 -1 reviewed p.T181M 1.000 165 0% 194 20.1% 10 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M ATP2A3 489 genome.wustl.edu 37 17 3854592 3854592 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174953.1 -1 reviewed p.R139M 1.000 41 0% 60 20% 16 0% probably_damaging(0.961) tolerated(0.07) deleterious(0.723) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M ZZEF1 23140 genome.wustl.edu 37 17 3920981 3920981 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015113.3 -1 validated p.P2562L 0.971 190 0% 142 21.1% 10 50% possibly_damaging(0.903) tolerated(0.08) deleterious(0.658) NULL ZZEF1 23140 genome.wustl.edu 37 17 3992106 3992106 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015113.3 -1 validated p.L703I 1.000 210 0% 110 26.4% 2 50% benign(0.421) tolerated(0.09) neutral(0.433) NULL ZZEF1 23140 genome.wustl.edu 37 17 4007954 4007954 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015113.3 -1 validated p.V516F 1.000 299 0% 100 20% 1 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ANKFY1 51479 genome.wustl.edu 37 17 4085547 4085547 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016376.3 -1 validated p.P685S 0.996 75 0% 84 19% 10 30% benign(0.013) tolerated(0.67) neutral(0.003) HMMPfam_Ank,superfamily_ANK UBE2G1 7326 genome.wustl.edu 37 17 4210320 4210320 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003342.4 -1 reviewed p.L49I 1.000 280 0% 152 19.7% 28 39.2% benign(0.005) tolerated(0.17) neutral(0.059) HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like MYBBP1A 10514 genome.wustl.edu 37 17 4442768 4442768 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105538.1 -1 validated p.S1310N 0.993 146 0% 180 22.8% 75 12% possibly_damaging(0.911) deleterious(0) deleterious(0.807) NULL MYBBP1A 10514 genome.wustl.edu 37 17 4442772 4442772 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105538.1 -1 validated p.P1309T 0.817 138 0% 181 21.5% 71 61.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GGT6 124975 genome.wustl.edu 37 17 4461567 4461567 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122890.1 -1 validated p.D409Y 0.901 136 0.7% 140 25.7% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_G_glu_transpept GGT6 124975 genome.wustl.edu 37 17 4461729 4461729 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122890.1 -1 validated p.A355T 0.980 59 0% 54 24.1% 1 0% benign(0) tolerated(1) - HMMPfam_G_glu_transpept SMTNL2 342527 genome.wustl.edu 37 17 4498569 4498569 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114974.1 +1 validated p.A312 0.086 38 0% 19 21.1% 5 20% - - - NULL PELP1 27043 genome.wustl.edu 37 17 4579336 4579336 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014389.2 -1 validated p.M325I 1.000 179 0% 165 22.4% 52 50% benign(0.099) tolerated(0.1) neutral(0.294) NULL PELP1 27043 genome.wustl.edu 37 17 4580106 4580106 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014389.2 -1 validated p.G215D 1.000 206 0% 181 18.2% 51 39.2% probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL ARRB2 409 genome.wustl.edu 37 17 4623696 4623696 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004313.3 +1 reviewed p.S337F 0.999 259 0% 263 23.2% 68 17.6% possibly_damaging(0.742) tolerated(0.33) neutral(0.296) HMMPfam_Arrestin_C,superfamily_E set domains PLD2 5338 genome.wustl.edu 37 17 4721299 4721299 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002663.3 +1 validated p.V606 0.998 93 0% 125 21.6% 14 28.5% - - - superfamily_Phospholipase D/nuclease PLD2 5338 genome.wustl.edu 37 17 4721881 4721881 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002663.3 +1 validated p.A701V 1.000 225 0% 210 17.1% 24 0% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) superfamily_Phospholipase D/nuclease PLD2 5338 genome.wustl.edu 37 17 4722099 4722099 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002663.3 +1 validated p.L718 0.782 221 0% 229 28.4% 19 68.4% - - - superfamily_Phospholipase D/nuclease PLD2 5338 genome.wustl.edu 37 17 4725128 4725128 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002663.3 +1 validated p.R835* 0.991 245 0% 312 24.7% 29 20.6% - - - NULL MINK1 50488 genome.wustl.edu 37 17 4799329 4799329 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153827.4 +1 reviewed p.I1132 0.977 176 0% 188 19.1% 65 47.6% - - - HMMPfam_CNH,HMMSmart_SM00036 CHRNE 1145 genome.wustl.edu 37 17 4805759 4805759 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000080.3 -1 reviewed p.V74I 1.000 495 0% 527 22% 2 0% possibly_damaging(0.861) deleterious(0) deleterious(0.778) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD GP1BA 2811 genome.wustl.edu 37 17 4836064 4836064 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000173.5 +1 reviewed p.S55R 0.000 169 0% 190 18.9% 0 - possibly_damaging(0.783) tolerated(0.08) deleterious(0.593) superfamily_SSF52058 GP1BA 2811 genome.wustl.edu 37 17 4837351 4837351 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000173.5 +1 reviewed p.P471 0.000 184 0% 174 21.8% 0 - - - - NULL SLC25A11 8402 genome.wustl.edu 37 17 4841065 4841065 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003562.4 -1 validated p.A306T 1.000 64 0% 101 24.8% 202 37.1% benign(0.064) tolerated(0.38) neutral(0.022) HMMPfam_Mito_carr SPAG7 9552 genome.wustl.edu 37 17 4863146 4863146 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004890.2 -1 validated p.S161 0.802 75 0% 102 20.6% 163 34.9% - - - NULL CAMTA2 23125 genome.wustl.edu 37 17 4877707 4877707 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015099.3 -1 validated p.C663* 0.577 179 0% 216 19.4% 13 30.7% - - - NULL INCA1 388324 genome.wustl.edu 37 17 4892898 4892898 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000396829 -1 known p.L74F 0.907 122 0% 186 25.8% 5 20% possibly_damaging(0.45) tolerated(0.21) neutral(0.192) NULL KIF1C 10749 genome.wustl.edu 37 17 4923920 4923920 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006612.5 +1 validated p.Q628H 1.000 89 0% 58 12.1% 71 18.3% possibly_damaging(0.832) tolerated(0.09) deleterious(0.613) NULL KIF1C 10749 genome.wustl.edu 37 17 4927262 4927262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006612.5 +1 validated p.A1043V 0.674 88 0% 84 15.5% 116 33.6% possibly_damaging(0.578) tolerated(0.06) deleterious(0.521) NULL SLC52A1 55065 genome.wustl.edu 37 17 4937526 4937526 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001104577.1 -1 validated p.V86 0.875 119 0% 83 18.1% 1 100% - - - NULL USP6 9098 genome.wustl.edu 37 17 5072326 5072326 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004505.2 +1 validated p.A1165T 0.361 169 0% 101 23.8% 0 - benign(0.02) tolerated(0.36) neutral(0.021) HMMPfam_UCH,superfamily_Cysteine proteinases USP6 9098 genome.wustl.edu 37 17 5074001 5074001 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004505.2 +1 validated p.R1249W 0.732 189 0% 142 16.9% 0 - possibly_damaging(0.448) deleterious(0.02) deleterious(0.529) HMMPfam_UCH,superfamily_Cysteine proteinases ZNF594 84622 genome.wustl.edu 37 17 5086640 5086640 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032530.1 -1 validated p.F304 0.724 273 0% 287 17.1% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 RABEP1 9135 genome.wustl.edu 37 17 5257672 5257672 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004703.4 +1 validated p.R328G 0.967 495 0% 208 21.2% 11 54.5% benign(0.009) deleterious(0.01) neutral(0.406) NULL RABEP1 9135 genome.wustl.edu 37 17 5276635 5276635 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004703.4 +1 validated p.Q637 1.000 394 0% 173 23.7% 22 40.9% - - - HMMPfam_Rab5-bind RABEP1 9135 genome.wustl.edu 37 17 5286512 5286512 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004703.4 +1 validated p.E861D 1.000 150 0% 57 19.3% 16 37.5% probably_damaging(0.994) tolerated(0.32) deleterious(0.476) NULL NUP88 4927 genome.wustl.edu 37 17 5302932 5302932 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002532.3 -1 reviewed p.A411S 1.000 222 0% 105 15.2% 65 40% benign(0.053) tolerated(0.82) neutral(0.004) HMMPfam_Nup88 C1QBP 708 genome.wustl.edu 37 17 5341581 5341581 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001212.3 -1 reviewed p.F82S 1.000 421 0.2% 570 15.1% 77 23.3% possibly_damaging(0.914) deleterious(0) deleterious(0.810) superfamily_MAM33 NLRP1 22861 genome.wustl.edu 37 17 5418312 5418312 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033004.3 -1 reviewed p.S1395L 0.002 149 0.7% 83 20.5% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CARD,superfamily_DEATH domain WSCD1 23302 genome.wustl.edu 37 17 5983982 5983982 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015253.1 +1 validated p.A2T 1.000 37 0% 48 29.2% 6 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL WSCD1 23302 genome.wustl.edu 37 17 6023676 6023676 + Missense_Mutation SNP G G A rs191802540 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015253.1 +1 validated p.V475I 0.989 60 0% 68 16.2% 6 33.3% probably_damaging(0.98) tolerated(0.49) neutral(0.434) superfamily_SSF52540 PITPNM3 83394 genome.wustl.edu 37 17 6367603 6367603 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031220.3 -1 reviewed p.G681 1.000 58 0% 39 17.9% 5 40% - - - NULL PITPNM3 83394 genome.wustl.edu 37 17 6367609 6367609 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031220.3 -1 reviewed p.S679 0.990 57 0% 39 25.6% 3 66.6% - - - NULL PITPNM3 83394 genome.wustl.edu 37 17 6374578 6374578 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031220.3 -1 reviewed p.S509 0.000 43 0% 32 34.4% 0 - - - - HMMPfam_DDHD KIAA0753 9851 genome.wustl.edu 37 17 6493229 6493229 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014804.2 -1 validated p.R886* 0.000 171 0.6% 149 23.5% 4 0% - - - NULL ALOX12 239 genome.wustl.edu 37 17 6913317 6913317 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000697.2 +1 validated p.R562W 1.000 217 0% 209 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lipoxygenase,superfamily_Lipoxygenase BCL6B 255877 genome.wustl.edu 37 17 6929795 6929795 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181844.3 +1 validated p.C303 1.000 357 0% 300 24% 2 50% - - - superfamily_C2H2 and C2HC zinc fingers BCL6B 255877 genome.wustl.edu 37 17 6930373 6930373 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181844.3 +1 validated p.H430 1.000 77 0% 76 28.9% 3 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SLC16A13 201232 genome.wustl.edu 37 17 6941941 6941941 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201566.2 +1 validated p.L272M 1.000 218 0% 208 26% 4 25% probably_damaging(0.994) deleterious(0.02) deleterious(0.835) HMMPfam_MFS_1,superfamily_MFS general substrate transporter ACADVL 37 genome.wustl.edu 37 17 7127194 7127194 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000018.2 +1 reviewed p.K444N 1.000 279 0% 277 19.5% 194 1% possibly_damaging(0.889) deleterious(0.02) deleterious(0.732) PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like ACADVL 37 genome.wustl.edu 37 17 7127321 7127321 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000018.2 +1 reviewed p.R456H 0.999 407 0.2% 462 19.7% 280 13.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like DVL2 1856 genome.wustl.edu 37 17 7133130 7133130 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004422.2 -1 reviewed p.S218I 1.000 70 0% 122 13.1% 29 24.1% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Dishevelled PHF23 79142 genome.wustl.edu 37 17 7139879 7139879 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024297.2 -1 validated p.D123N 1.000 183 0% 218 21.1% 95 44.2% possibly_damaging(0.86) tolerated(0.25) neutral(0.369) NULL NEURL4 84461 genome.wustl.edu 37 17 7219612 7219612 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032442.2 -1 validated p.A1507S 1.000 67 0% 79 21.5% 13 7.6% possibly_damaging(0.543) deleterious(0.04) deleterious(0.533) NULL NEURL4 84461 genome.wustl.edu 37 17 7224119 7224119 + Missense_Mutation SNP C C T rs180776848 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032442.2 -1 validated p.V1162I 0.996 102 0% 128 25.8% 4 50% possibly_damaging(0.904) deleterious(0.02) deleterious(0.742) HMMPfam_Neuralized,HMMSmart_SM00588 NEURL4 84461 genome.wustl.edu 37 17 7225195 7225195 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032442.2 -1 validated p.E954* 1.000 154 0% 184 26.6% 6 0% - - - HMMPfam_Neuralized,HMMSmart_SM00588 NEURL4 84461 genome.wustl.edu 37 17 7227518 7227518 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032442.2 -1 validated p.Q657H 1.000 80 0% 68 30.9% 5 40% probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL NEURL4 84461 genome.wustl.edu 37 17 7228215 7228215 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032442.2 -1 validated p.K572 1.000 278 0% 318 24.2% 5 20% - - - HMMPfam_Neuralized,HMMSmart_SM00588 KCTD11 147040 genome.wustl.edu 37 17 7256535 7256535 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002914.2 +1 validated p.A92T 1.000 39 0% 49 22.4% 5 0% possibly_damaging(0.935) tolerated(0.85) neutral(0.381) NULL NLGN2 57555 genome.wustl.edu 37 17 7318031 7318031 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020795.2 +1 reviewed p.L236 1.000 116 0.9% 169 32.5% 6 33.3% - - - HMMPfam_COesterase,superfamily_SSF53474 NLGN2 57555 genome.wustl.edu 37 17 7319011 7319011 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020795.2 +1 reviewed p.D407Y 1.000 236 0% 298 17.4% 8 37.5% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_COesterase,superfamily_SSF53474 SPEM1 374768 genome.wustl.edu 37 17 7323814 7323814 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199339.2 +1 provisional p.I37 1.000 114 0% 128 13.3% 0 - - - - NULL C17orf74 201243 genome.wustl.edu 37 17 7330358 7330358 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175734.4 +1 validated p.Q350* 0.003 24 0% 26 46.2% 0 - - - - NULL ZBTB4 57659 genome.wustl.edu 37 17 7366430 7366430 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128833.1 -1 validated p.R624H 0.990 87 0% 84 14.3% 12 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ZBTB4 57659 genome.wustl.edu 37 17 7366586 7366586 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128833.1 -1 validated p.A572V 0.997 78 0% 65 20% 19 31.5% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL POLR2A 5430 genome.wustl.edu 37 17 7402455 7402455 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000937.3 +1 validated p.P478Q 1.000 280 0% 216 14.8% 19 47.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_RNA_pol_Rpb1_2,superfamily_SSF64484 POLR2A 5430 genome.wustl.edu 37 17 7417207 7417207 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000937.3 +1 validated p.S1875L 0.179 1187 0% 899 20.7% 286 39.5% unknown(0) deleterious(0.03) - HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT CD68 968 genome.wustl.edu 37 17 7483302 7483302 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001251.2 +1 reviewed p.T75M 0.001 744 0.1% 719 24.3% 164 3% possibly_damaging(0.725) tolerated(0.14) deleterious(0.513) HMMPfam_Lamp SOX15 6665 genome.wustl.edu 37 17 7492776 7492776 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006942.1 -1 reviewed p.K73N 1.000 66 0% 56 10.7% 2 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box SHBG 6462 genome.wustl.edu 37 17 7535063 7535063 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040.3 +1 reviewed p.R238* 0.850 185 0% 176 27.8% 0 - - - - superfamily_Concanavalin A-like lectins/glucanases TP53 7157 genome.wustl.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 byCluster TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000546.4 -1 reviewed p.R273C 0.830 305 0% 226 20.8% 158 44.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_p53-like transcription factors,HMMPfam_P53 TP53 7157 genome.wustl.edu 37 17 7577563 7577563 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000546.4 -1 reviewed p.S240G 1.000 180 0% 153 14.4% 137 29.9% possibly_damaging(0.812) tolerated(0.2) neutral(0.354) PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53 TP53 7157 genome.wustl.edu 37 17 7579497 7579497 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000546.4 -1 reviewed p.P64T 0.000 94 0% 77 26% 98 35.7% benign(0.012) tolerated(0.58) neutral(0.005) NULL DNAH2 146754 genome.wustl.edu 37 17 7637903 7637903 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020877.2 +1 validated p.C285 1.000 220 0% 132 22.7% 0 - - - - HMMPfam_DHC_N1 DNAH2 146754 genome.wustl.edu 37 17 7668885 7668885 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020877.2 +1 validated e20+2 1.000 169 0% 103 16.5% 0 - - - - - DNAH2 146754 genome.wustl.edu 37 17 7678612 7678612 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020877.2 +1 validated p.G1591 0.999 278 0% 179 18.4% 1 0% - - - HMMPfam_DHC_N2 DNAH2 146754 genome.wustl.edu 37 17 7679455 7679455 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020877.2 +1 validated p.E1645 0.880 167 0% 74 16.2% 31 48.3% - - - NULL DNAH2 146754 genome.wustl.edu 37 17 7691192 7691192 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020877.2 +1 validated p.F2206 0.501 116 0% 122 17.2% 0 - - - - HMMPfam_AAA_5 KDM6B 23135 genome.wustl.edu 37 17 7750491 7750491 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080424.1 +1 provisional p.G326 0.999 16 0% 20 30% 1 0% - - - NULL KDM6B 23135 genome.wustl.edu 37 17 7754850 7754850 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080424.1 +1 provisional p.D1333E 1.000 167 0% 184 17.9% 28 28.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL CHD3 1107 genome.wustl.edu 37 17 7806657 7806657 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005271.2 +1 reviewed p.A1247V 1.000 59 0% 69 21.7% 66 37.8% possibly_damaging(0.553) - - superfamily_P-loop containing nucleoside triphosphate hydrolases KCNAB3 9196 genome.wustl.edu 37 17 7827056 7827056 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004732.2 -1 reviewed p.G341C 1.000 177 0% 210 11.9% 1 0% possibly_damaging(0.83) deleterious(0) deleterious(0.760) HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red KCNAB3 9196 genome.wustl.edu 37 17 7829266 7829266 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004732.2 -1 reviewed p.K159 1.000 401 0% 422 20.1% 3 0% - - - HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red TRAPPC1 58485 genome.wustl.edu 37 17 7835143 7835143 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021210.4 -1 reviewed p.T2I 1.000 94 0% 142 16.9% 231 32.4% possibly_damaging(0.894) tolerated(0.18) neutral(0.408) superfamily_SNARE-like CNTROB 116840 genome.wustl.edu 37 17 7849130 7849130 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000380262 +1 known p.V607M 0.802 113 0% 114 26.3% 34 32.3% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL GUCY2D 3000 genome.wustl.edu 37 17 7909826 7909826 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000180.3 +1 reviewed p.C391Y 0.998 66 0% 76 23.7% 0 - possibly_damaging(0.811) deleterious(0.04) deleterious(0.654) HMMPfam_ANF_receptor,superfamily_SSF53822 ALOX15B 247 genome.wustl.edu 37 17 7948905 7948905 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001141.2 +1 reviewed p.F367 0.324 139 0% 120 23.3% 0 - - - - HMMPfam_Lipoxygenase,superfamily_Lipoxigenase ALOXE3 59344 genome.wustl.edu 37 17 8011799 8011799 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021628.2 -1 reviewed p.G557 0.734 82 0% 74 14.9% 0 - - - - HMMPfam_Lipoxygenase,superfamily_Lipoxygenase ALOXE3 59344 genome.wustl.edu 37 17 8018328 8018328 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021628.2 -1 reviewed p.S161I 1.000 376 0% 366 18.9% 0 - probably_damaging(0.996) tolerated(0.22) deleterious(0.504) superfamily_Lipoxygenase PER1 5187 genome.wustl.edu 37 17 8045175 8045175 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002616.2 -1 reviewed p.A1183D 1.000 97 0% 92 26.1% 15 46.6% probably_damaging(0.989) tolerated(0.21) deleterious(0.483) NULL PER1 5187 genome.wustl.edu 37 17 8053376 8053376 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002616.2 -1 reviewed p.R148* 1.000 149 0% 210 26.2% 1 0% - - - NULL TMEM107 84314 genome.wustl.edu 37 17 8079300 8079300 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032354.3 -1 validated p.E44D 1.000 334 0% 343 19% 25 24% possibly_damaging(0.775) tolerated(0.46) neutral(0.300) NULL AURKB 9212 genome.wustl.edu 37 17 8110190 8110190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004217.2 -1 validated p.R139C 1.000 82 0% 64 21.9% 62 53.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CTC1 80169 genome.wustl.edu 37 17 8131585 8131585 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025099.5 -1 validated p.H1189 0.001 197 0% 107 23.4% 35 34.2% - - - NULL PFAS 5198 genome.wustl.edu 37 17 8161425 8161425 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012393.2 +1 reviewed p.G415D 1.000 68 0% 78 23.1% 14 35.7% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_PurM N-terminal domain-like ARHGEF15 22899 genome.wustl.edu 37 17 8216372 8216372 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173728.2 +1 reviewed p.R245Q 0.123 38 0% 45 35.6% 1 0% probably_damaging(0.976) tolerated(0.08) deleterious(0.718) NULL ARHGEF15 22899 genome.wustl.edu 37 17 8218236 8218236 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173728.2 +1 reviewed p.G334 0.078 147 0% 164 20.7% 1 0% - - - NULL MYH10 4628 genome.wustl.edu 37 17 8379143 8379143 + Silent SNP C C T rs139724230 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005964.1 -1 validated p.T1970 0.041 369 0% 334 12.6% 69 17.3% - - - NULL MYH10 4628 genome.wustl.edu 37 17 8397075 8397075 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005964.1 -1 validated p.K1364 0.971 220 0% 150 19.3% 31 51.6% - - - HMMPfam_Myosin_tail_1 MYH10 4628 genome.wustl.edu 37 17 8421976 8421976 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005964.1 -1 validated p.A795V 1.000 243 0% 126 31.7% 21 42.8% possibly_damaging(0.898) deleterious(0) deleterious(0.799) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH10 4628 genome.wustl.edu 37 17 8424198 8424198 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005964.1 -1 validated p.Q726H 1.000 318 0% 127 25.2% 15 33.3% probably_damaging(1) tolerated(0.19) deleterious(0.549) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases SPDYE4 388333 genome.wustl.edu 37 17 8660777 8660777 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128076.1 -1 provisional p.S48F 0.000 134 0% 90 22.2% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL MFSD6L 162387 genome.wustl.edu 37 17 8700939 8700939 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152599.3 -1 validated p.Y500 0.000 61 0% 107 15.9% 1 100% - - - superfamily_MFS_gen_substrate_transporter PIK3R5 23533 genome.wustl.edu 37 17 8784104 8784104 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142633.1 -1 validated e18-1 1.000 185 0% 160 27.5% 0 - - - - - NTN1 9423 genome.wustl.edu 37 17 9143093 9143093 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004822.2 +1 reviewed p.D541 1.000 45 0% 52 28.8% 4 75% - - - superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C WDR16 146845 genome.wustl.edu 37 17 9490146 9490146 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145054.4 +1 validated p.D134 1.000 243 0% 217 23% 1 0% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 WDR16 146845 genome.wustl.edu 37 17 9515758 9515758 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145054.4 +1 validated p.T329 0.987 313 0% 277 12.6% 2 0% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like GLP2R 9340 genome.wustl.edu 37 17 9792898 9792898 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004246.1 +1 reviewed p.L513P 0.000 33 0% 22 18.2% 0 - benign(0.135) tolerated(0.13) neutral(0.264) NULL MYH13 8735 genome.wustl.edu 37 17 10204885 10204885 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003802.2 -1 validated e38+1 1.000 240 0% 139 23.7% 0 - - - - - MYH13 8735 genome.wustl.edu 37 17 10213082 10213082 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003802.2 -1 validated p.S1574 0.579 178 0% 175 22.9% 0 - - - - HMMPfam_Myosin_tail_1 MYH13 8735 genome.wustl.edu 37 17 10243714 10243714 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003802.2 -1 validated p.D633E 0.017 142 0% 41 34.1% 0 - benign(0) tolerated(1) - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH13 8735 genome.wustl.edu 37 17 10247367 10247367 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003802.2 -1 validated p.T548 0.837 625 0% 223 13% 0 - - - - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH13 8735 genome.wustl.edu 37 17 10258237 10258237 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003802.2 -1 validated p.M292I 1.000 387 0% 101 24.8% 0 - benign(0.003) tolerated(0.13) neutral(0.253) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH8 4626 genome.wustl.edu 37 17 10310213 10310213 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002472.2 -1 reviewed p.T683 1.000 365 0% 239 24.3% 0 - - - - HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYH4 4622 genome.wustl.edu 37 17 10352055 10352055 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017533.2 -1 validated p.L1471I 1.000 196 0% 87 14.9% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Myosin_tail_1 MYH1 4619 genome.wustl.edu 37 17 10395864 10395864 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005963.3 -1 reviewed p.L1897F 1.000 334 0% 261 12.3% 0 - possibly_damaging(0.692) deleterious(0.01) deleterious(0.653) HMMPfam_Myosin_tail_1 MYH1 4619 genome.wustl.edu 37 17 10397987 10397987 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005963.3 -1 reviewed p.R1824C 0.999 630 0% 484 20.5% 0 - probably_damaging(0.985) deleterious(0) deleterious(0.877) HMMPfam_Myosin_tail_1 MYH3 4621 genome.wustl.edu 37 17 10543993 10543993 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002470.2 -1 reviewed p.L726 0.901 321 0% 165 10.3% 0 - - - - HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYH3 4621 genome.wustl.edu 37 17 10551904 10551904 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002470.2 -1 reviewed p.K235N 1.000 467 0% 232 24.6% 0 - possibly_damaging(0.856) deleterious(0) deleterious(0.775) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYH3 4621 genome.wustl.edu 37 17 10553002 10553002 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002470.2 -1 reviewed p.T178 0.995 464 0.2% 215 26% 0 - - - - HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 SCO1 6341 genome.wustl.edu 37 17 10596250 10596250 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004589.2 -1 reviewed p.I131 0.004 130 0% 123 29.3% 32 31.2% - - - superfamily_Thiordxn-like_fd PIRT 644139 genome.wustl.edu 37 17 10728876 10728876 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101387.1 -1 validated p.S29R 1.000 94 0% 40 30% 0 - possibly_damaging(0.836) deleterious(0) deleterious(0.764) NULL SHISA6 388336 genome.wustl.edu 37 17 11459084 11459084 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207386.3 +1 validated p.T327I 1.000 249 0% 271 22.9% 0 - probably_damaging(1) tolerated(0.19) deleterious(0.549) NULL DNAH9 1770 genome.wustl.edu 37 17 11604468 11604468 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.G1685 0.993 210 0% 68 14.7% 0 - - - - HMMPfam_DHC_N2 DNAH9 1770 genome.wustl.edu 37 17 11607632 11607632 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.A1755V 0.855 222 0% 82 15.9% 0 - benign(0.095) tolerated(0.29) neutral(0.036) NULL DNAH9 1770 genome.wustl.edu 37 17 11631225 11631225 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.V1934L 1.000 504 0% 226 20.8% 0 - probably_damaging(0.984) deleterious(0) deleterious(0.875) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH9 1770 genome.wustl.edu 37 17 11650950 11650950 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.Q2159 1.000 195 0% 73 20.5% 0 - - - - HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH9 1770 genome.wustl.edu 37 17 11672640 11672640 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.L2516M 1.000 61 0% 51 19.6% 0 - probably_damaging(0.956) deleterious(0.03) deleterious(0.764) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH9 1770 genome.wustl.edu 37 17 11711121 11711121 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.K2831N 1.000 127 0% 27 22.2% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH9 1770 genome.wustl.edu 37 17 11774938 11774938 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001372.3 +1 reviewed p.N3359 0.596 157 0% 85 16.5% 0 - - - - NULL ZNF18 7566 genome.wustl.edu 37 17 11881274 11881274 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144680.2 -1 provisional p.*550 0.015 270 0% 120 20.8% 15 66.6% - - - NULL ZNF18 7566 genome.wustl.edu 37 17 11881641 11881641 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144680.2 -1 provisional p.R428I 0.999 200 0% 109 22% 10 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers MYOCD 93649 genome.wustl.edu 37 17 12656290 12656290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153604.2 +1 reviewed p.P562L 0.005 81 1.2% 37 13.5% 0 - possibly_damaging(0.527) deleterious(0) deleterious(0.623) NULL ARHGAP44 9912 genome.wustl.edu 37 17 12883427 12883427 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014859.4 +1 validated p.G606C 0.991 88 0% 68 13.2% 5 60% probably_damaging(0.993) deleterious(0.01) deleterious(0.856) NULL ENSG00000205325 0 genome.wustl.edu 37 17 14683242 14683242 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379640 -1 known p.S82N 0.006 169 0% 92 22.8% 0 - unknown(0) - - NULL ENSG00000205325 0 genome.wustl.edu 37 17 14683463 14683463 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379640 -1 known p.Q8H 0.001 188 0% 124 17.7% 0 - unknown(0) - - NULL TEKT3 64518 genome.wustl.edu 37 17 15212016 15212016 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031898.2 -1 reviewed p.P407 0.416 269 0.4% 146 17.1% 0 - - - - HMMPfam_Tektin CDRT4 284040 genome.wustl.edu 37 17 15341395 15341395 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173622.3 -1 validated p.L51M 0.000 400 0% 119 22.7% 8 37.5% possibly_damaging(0.634) deleterious(0) deleterious(0.666) NULL FAM18B2 201158 genome.wustl.edu 37 17 15441450 15441450 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438826 -1 known p.Q203H 0.969 377 0% 271 12.9% 11 0% possibly_damaging(0.708) deleterious(0.01) deleterious(0.661) NULL CDRT1 374286 genome.wustl.edu 37 17 15508559 15508559 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006382.3 -1 provisional p.G471R 1.000 445 0% 313 20.1% 0 - unknown(0) deleterious(0) - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 TBC1D26 353149 genome.wustl.edu 37 17 15645284 15645284 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178571.4 +1 validated p.S232L 0.001 165 0% 133 21.8% 0 - benign(0) deleterious(0) neutral(0.445) HMMSmart_SM00164 NCOR1 9611 genome.wustl.edu 37 17 15935669 15935669 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006311.2 -1 reviewed p.R2422* 1.000 199 0% 86 22.1% 102 36.2% - - - NULL NCOR1 9611 genome.wustl.edu 37 17 15952196 15952196 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006311.2 -1 reviewed p.L2167I 1.000 134 0% 90 11.1% 33 15.1% probably_damaging(0.998) tolerated(0.2) deleterious(0.523) NULL NCOR1 9611 genome.wustl.edu 37 17 15961785 15961785 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006311.2 -1 reviewed p.N2004H 1.000 268 0% 145 13.1% 29 13.7% benign(0.034) tolerated(0.2) neutral(0.051) NULL NCOR1 9611 genome.wustl.edu 37 17 15974943 15974943 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006311.2 -1 reviewed p.G1311D 1.000 619 0% 339 22.4% 13 38.4% probably_damaging(1) tolerated(0.1) deleterious(0.786) NULL NCOR1 9611 genome.wustl.edu 37 17 16004602 16004602 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006311.2 -1 reviewed p.S884 1.000 393 0% 402 23.6% 12 41.6% - - - NULL TRPV2 51393 genome.wustl.edu 37 17 16320999 16320999 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016113.3 +1 reviewed p.S6N 0.493 67 0% 58 19% 2 0% benign(0.005) tolerated(0.27) neutral(0.034) NULL TRPV2 51393 genome.wustl.edu 37 17 16325925 16325925 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016113.3 +1 reviewed p.G116D 1.000 112 0% 76 21.1% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK TRPV2 51393 genome.wustl.edu 37 17 16338243 16338243 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016113.3 +1 reviewed p.L718 0.797 156 0% 140 26.4% 58 0% - - - NULL ZNF287 57336 genome.wustl.edu 37 17 16470874 16470874 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020653.2 -1 validated p.P58S 1.000 206 0% 171 24.6% 4 75% probably_damaging(0.98) tolerated(0.65) neutral(0.427) HMMPfam_SCAN,HMMSmart_SM00431 MPRIP 23164 genome.wustl.edu 37 17 17068965 17068965 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000313485 +1 known p.P331L 0.971 27 0% 152 16.4% 2 0% possibly_damaging(0.922) deleterious(0.03) deleterious(0.736) NULL FLCN 201163 genome.wustl.edu 37 17 17129393 17129393 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389168 -1 known p.H165N 0.000 75 0% 62 27.4% 0 - benign(0.004) tolerated(0.13) neutral(0.253) NULL NT5M 56953 genome.wustl.edu 37 17 17250223 17250223 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020201.3 +1 reviewed p.D217N 1.000 41 0% 30 20% 0 - benign(0.034) tolerated(0.57) neutral(0.008) HMMPfam_NT5C,superfamily_SSF56784 LRRC48 83450 genome.wustl.edu 37 17 17887221 17887221 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130090.1 +1 validated p.I80 0.995 273 0% 180 22.2% 5 40% - - - HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1 C17orf39 79018 genome.wustl.edu 37 17 17965277 17965277 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024052.4 +1 validated p.R276K 1.000 290 0% 137 21.2% 13 38.4% benign(0.024) tolerated(0.88) neutral(0.001) HMMPfam_Vac_ImportDeg DRG2 1819 genome.wustl.edu 37 17 18005252 18005252 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001388.3 +1 reviewed p.D249E 1.000 115 0% 107 30.8% 78 34.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_P-loop containing nucleoside triphosphate hydrolases MYO15A 51168 genome.wustl.edu 37 17 18049347 18049347 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016239.3 +1 reviewed p.E2145 1.000 63 0% 62 29% 0 - - - - HMMPfam_MyTH4,HMMSmart_SM00139 MYO15A 51168 genome.wustl.edu 37 17 18051829 18051829 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016239.3 +1 reviewed p.P2237 0.163 104 0% 128 25.8% 0 - - - - NULL MYO15A 51168 genome.wustl.edu 37 17 18055205 18055205 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016239.3 +1 reviewed p.E2611 1.000 79 0% 116 25.9% 0 - - - - NULL ALKBH5 54890 genome.wustl.edu 37 17 18111676 18111676 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017758.3 +1 validated p.S384N 1.000 25 0% 15 26.7% 58 37.9% probably_damaging(0.977) deleterious(0.02) deleterious(0.802) NULL FLII 2314 genome.wustl.edu 37 17 18159877 18159877 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002018.2 -1 reviewed p.T70M 1.000 124 0% 158 19% 54 33.3% possibly_damaging(0.931) deleterious(0.01) deleterious(0.783) HMMPfam_LRR_1,superfamily_SSF52047 TOP3A 7156 genome.wustl.edu 37 17 18188816 18188816 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004618.3 -1 reviewed p.A539V 1.000 112 0% 90 18.9% 14 42.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac SMCR8 140775 genome.wustl.edu 37 17 18226199 18226199 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144775.2 +1 validated p.E877K 0.009 222 0% 171 21.1% 7 14.2% benign(0.011) tolerated(0.66) neutral(0.003) NULL SMCR8 140775 genome.wustl.edu 37 17 18226365 18226365 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144775.2 +1 validated p.S932I 1.000 77 0% 72 12.5% 2 50% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) NULL ENSG00000248683 0 genome.wustl.edu 37 17 18575048 18575048 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000507743 +1 novel NULL 0.938 37 0% 57 22.8% 3 0% - - - - SLC5A10 125206 genome.wustl.edu 37 17 18872453 18872453 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152351.3 +1 validated p.A181V 1.000 180 0% 164 22% 23 43.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SSF EPN2 22905 genome.wustl.edu 37 17 19186489 19186489 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014964.4 +1 reviewed p.E19D 1.000 194 0% 188 13.3% 15 20% benign(0.002) tolerated(0.23) neutral(0.042) HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273 MAPK7 5598 genome.wustl.edu 37 17 19284153 19284153 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002749.3 +1 reviewed p.P211S 0.990 120 0% 105 21% 9 11.1% unknown(0) deleterious(0.04) - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MAPK7 5598 genome.wustl.edu 37 17 19284385 19284385 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002749.3 +1 reviewed p.A288D 1.000 46 0% 64 15.6% 7 14.2% unknown(0) tolerated(0.09) - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SLC47A2 146802 genome.wustl.edu 37 17 19611636 19611636 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152908.3 -1 validated p.S239Y 0.000 147 0.7% 149 20.8% 0 - benign(0) tolerated(1) - NULL ALDH3A1 218 genome.wustl.edu 37 17 19646550 19646550 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000691.4 -1 reviewed p.A130V 1.000 64 0% 70 27.1% 6 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aldedh,superfamily_ALDH-like AKAP10 11216 genome.wustl.edu 37 17 19839700 19839700 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007202.2 -1 reviewed p.V456I 0.996 322 0% 183 24% 8 37.5% benign(0.004) tolerated(0.19) neutral(0.050) HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS SPECC1 92521 genome.wustl.edu 37 17 20108826 20108826 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033553.1 +1 validated p.Q488H 1.000 123 0% 86 19.8% 30 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL USP22 23326 genome.wustl.edu 37 17 20921418 20921418 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015276.1 -1 validated p.R176H 1.000 144 0% 121 24.8% 36 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UCH,superfamily_Cysteine proteinases DHRS7B 25979 genome.wustl.edu 37 17 21094390 21094390 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015510.3 +1 validated p.R301Q 1.000 466 0% 314 13.1% 148 29.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_NAD(P)-bd MAP2K3 5606 genome.wustl.edu 37 17 21204212 21204212 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145109.2 +1 reviewed p.Q102H 1.000 165 0% 162 15.4% 82 46.3% benign(0.416) deleterious(0.03) deleterious(0.499) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase WSB1 26118 genome.wustl.edu 37 17 25636063 25636063 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452005 +1 known p.R15G 1.000 213 0% 104 25% 9 44.4% - - - NULL LGALS9 3965 genome.wustl.edu 37 17 25974134 25974134 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_009587.2 +1 reviewed p.S250G 0.000 300 0% 220 21.4% 370 38.3% benign(0.007) tolerated(0.35) neutral(0.021) HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases NOS2 4843 genome.wustl.edu 37 17 26114738 26114738 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000625.4 -1 reviewed p.E145K 0.990 381 0.5% 275 22.2% 0 - benign(0.062) deleterious(0.05) neutral(0.349) HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain ENSG00000251558 0 genome.wustl.edu 37 17 26207405 26207405 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502259 +1 known NULL 0.007 269 0% 219 19.6% 0 - - - - - SLC13A2 9058 genome.wustl.edu 37 17 26818769 26818769 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003984.3 +1 validated p.N259 0.000 242 0.4% 173 23.7% 0 - - - - HMMPfam_Na_sulph_symp FOXN1 8456 genome.wustl.edu 37 17 26861390 26861390 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003593.2 +1 reviewed p.L323 0.001 107 0% 134 25.4% 0 - - - - "HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain" ALDOC 230 genome.wustl.edu 37 17 26900821 26900821 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005165.2 -1 reviewed p.L311F 1.000 102 0% 70 11.4% 17 5.8% benign(0.394) deleterious(0.01) deleterious(0.532) HMMPfam_Glycolytic,superfamily_Aldolase SPAG5 10615 genome.wustl.edu 37 17 26918737 26918737 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006461.3 -1 reviewed p.Q472H 1.000 144 0% 120 20.8% 22 63.6% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL KIAA0100 9703 genome.wustl.edu 37 17 26958925 26958925 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014680.2 -1 validated p.A1337T 1.000 276 0% 140 15.7% 19 15.7% probably_damaging(0.995) tolerated(0.24) deleterious(0.495) NULL KIAA0100 9703 genome.wustl.edu 37 17 26961750 26961750 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014680.2 -1 validated p.R952H 1.000 200 0% 158 20.3% 9 55.5% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL KIAA0100 9703 genome.wustl.edu 37 17 26961819 26961819 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014680.2 -1 validated p.R929H 1.000 268 0% 156 21.2% 14 42.8% probably_damaging(1) tolerated(0.14) deleterious(0.750) NULL KIAA0100 9703 genome.wustl.edu 37 17 26965075 26965075 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014680.2 -1 validated p.Q517P 1.000 127 0% 124 25% 9 33.3% benign(0.001) tolerated(0.23) neutral(0.042) NULL PROCA1 147011 genome.wustl.edu 37 17 27031740 27031740 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152465.1 -1 provisional p.C71 0.976 185 0% 132 18.9% 4 0% - - - superfamily_PhospholipaseA2 PROCA1 147011 genome.wustl.edu 37 17 27031862 27031862 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152465.1 -1 provisional e2-1 1.000 110 0% 81 28.4% 2 50% - - - - TLCD1 116238 genome.wustl.edu 37 17 27051787 27051787 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138463.3 -1 validated p.A162V 0.986 157 0% 160 18.8% 105 45.7% benign(0.003) tolerated(0.62) neutral(0.004) HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC TRAF4 9618 genome.wustl.edu 37 17 27076342 27076342 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004295.3 +1 reviewed p.T387I 1.000 134 0% 144 20.1% 184 41.3% probably_damaging(0.986) deleterious(0.03) deleterious(0.799) HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like C17orf63 55731 genome.wustl.edu 37 17 27086644 27086644 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077498.1 -1 validated p.S111 1.000 190 0% 167 14.4% 7 14.2% - - - NULL FLOT2 2319 genome.wustl.edu 37 17 27216019 27216019 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004475.2 -1 reviewed p.K25 1.000 161 0% 118 18.6% 42 30.9% - - - HMMPfam_Band_7 MYO18A 399687 genome.wustl.edu 37 17 27424357 27424357 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_078471.3 -1 validated p.R1372W 1.000 119 0% 112 23.2% 27 51.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MYO18A 399687 genome.wustl.edu 37 17 27448730 27448730 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_078471.3 -1 validated p.P402 0.803 58 0% 47 21.3% 13 15.3% - - - HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases TAOK1 57551 genome.wustl.edu 37 17 27809228 27809228 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020791.1 +1 validated p.V193I 1.000 394 0% 180 23.9% 1 0% possibly_damaging(0.862) deleterious(0) deleterious(0.778) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TAOK1 57551 genome.wustl.edu 37 17 27849410 27849410 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020791.1 +1 validated p.R674H 1.000 196 0% 99 18.2% 5 80% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Protein kinase-like (PK-like) TAOK1 57551 genome.wustl.edu 37 17 27849522 27849522 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020791.1 +1 validated p.Q711H 1.000 114 0% 68 13.2% 2 0% probably_damaging(0.981) deleterious(0) deleterious(0.870) superfamily_Protein kinase-like (PK-like) TP53I13 90313 genome.wustl.edu 37 17 27898638 27898638 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138349.2 +1 provisional p.P71 1.000 442 0% 553 22.6% 153 35.9% - - - NULL ANKRD13B 124930 genome.wustl.edu 37 17 27937736 27937736 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152345.4 +1 validated p.R286C 0.998 395 0% 358 27.1% 17 41.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SSH2 85464 genome.wustl.edu 37 17 27958370 27958370 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033389.2 -1 reviewed p.M1254T 1.000 230 0% 145 18.6% 5 40% benign(0.299) deleterious(0) deleterious(0.537) NULL SSH2 85464 genome.wustl.edu 37 17 27993933 27993933 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033389.2 -1 reviewed p.I301 1.000 331 0% 151 26.5% 2 50% - - - HMMPfam_DEK_C BLMH 642 genome.wustl.edu 37 17 28601216 28601216 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000386.2 -1 reviewed e7-1 1.000 203 0% 111 19.8% 0 - - - - - CPD 1362 genome.wustl.edu 37 17 28712021 28712021 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001304.3 +1 reviewed p.G254V 1.000 326 0% 381 24.4% 1 0% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187 CPD 1362 genome.wustl.edu 37 17 28749867 28749867 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001304.3 +1 reviewed p.P495S 1.000 340 0% 133 24.8% 7 57.1% benign(0.039) tolerated(0.44) neutral(0.015) superfamily_SSF53187 GOSR1 9527 genome.wustl.edu 37 17 28808206 28808206 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004871.2 +1 reviewed p.K26R 1.000 157 0% 169 21.3% 21 42.8% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL ADAP2 55803 genome.wustl.edu 37 17 29261309 29261309 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018404.2 +1 validated p.K168N 0.852 171 0% 72 22.2% 15 0% possibly_damaging(0.87) tolerated(0.13) deleterious(0.591) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ADAP2 55803 genome.wustl.edu 37 17 29276329 29276329 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018404.2 +1 validated p.L228I 1.000 208 0% 125 20% 7 0% benign(0.001) tolerated(1) - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like NF1 4763 genome.wustl.edu 37 17 29533379 29533379 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042492.2 +1 reviewed p.R461Q 1.000 423 0.2% 177 27.7% 2 50% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL RAB11FIP4 84440 genome.wustl.edu 37 17 29848211 29848211 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032932.3 +1 validated p.T197 0.025 176 0% 146 26.7% 8 50% - - - NULL RAB11FIP4 84440 genome.wustl.edu 37 17 29848974 29848974 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032932.3 +1 validated p.S267N 0.974 248 0% 193 28.5% 15 53.3% benign(0.006) deleterious(0.03) neutral(0.364) NULL C17orf75 64149 genome.wustl.edu 37 17 30660455 30660455 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022344.2 -1 validated p.L319P 1.000 294 0% 335 16.1% 33 27.2% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL ZNF207 7756 genome.wustl.edu 37 17 30694843 30694843 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098507.1 +1 validated p.S325N 1.000 509 0% 262 19.8% 147 40.1% possibly_damaging(0.539) tolerated(0.48) neutral(0.193) NULL CDK5R1 8851 genome.wustl.edu 37 17 30815060 30815060 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003885.2 +1 reviewed p.R141Q 1.000 23 0% 32 21.9% 0 - probably_damaging(0.998) tolerated(0.08) deleterious(0.774) HMMPfam_CDK5_activator ASIC2 40 genome.wustl.edu 37 17 31344629 31344629 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_183377.1 -1 reviewed p.I505 1.000 252 0% 191 25.7% 0 - - - - HMMPfam_ASC TMEM132E 124842 genome.wustl.edu 37 17 32961902 32961902 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207313.1 +1 provisional p.Q501 1.000 72 0% 73 30.1% 0 - - - - NULL RFFL 117584 genome.wustl.edu 37 17 33343427 33343427 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017368.1 -1 validated p.T283I 0.994 294 0% 92 23.9% 13 30.7% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) superfamily_SAP domain FNDC8 54752 genome.wustl.edu 37 17 33454349 33454349 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017559.2 +1 validated p.S166 0.991 85 0% 111 19.8% 0 - - - - NULL SLC35G3 146861 genome.wustl.edu 37 17 33520807 33520807 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152462.2 -1 validated p.G174* 0.936 170 0% 193 20.2% 0 - - - - HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE SLFN5 162394 genome.wustl.edu 37 17 33592341 33592341 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144975.3 +1 validated p.P704T 0.072 399 0% 353 14.4% 14 21.4% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_P-loop containing nucleoside triphosphate hydrolases SLFN11 91607 genome.wustl.edu 37 17 33679808 33679808 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001104587.1 -1 validated p.T758I 0.000 134 0% 119 24.4% 8 37.5% benign(0.008) tolerated(0.08) neutral(0.300) superfamily_P-loop containing nucleoside triphosphate hydrolases SLFN11 91607 genome.wustl.edu 37 17 33690261 33690261 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001104587.1 -1 validated p.P189H 0.132 212 0% 128 25.8% 2 0% unknown(0) tolerated(0.13) - NULL SLFN12 55106 genome.wustl.edu 37 17 33747314 33747314 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018042.3 -1 validated p.R376W 0.000 408 0% 227 18.9% 12 66.6% benign(0.029) deleterious(0.02) neutral(0.385) NULL AP2B1 163 genome.wustl.edu 37 17 33925289 33925289 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030006.1 +1 reviewed p.K26 1.000 437 0% 488 24% 15 26.6% - - - HMMPfam_Adaptin_N,superfamily_ARM repeat AP2B1 163 genome.wustl.edu 37 17 33954514 33954514 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030006.1 +1 reviewed p.N350T 1.000 465 0% 188 13.8% 44 27.2% benign(0.015) deleterious(0) neutral(0.445) HMMPfam_Adaptin_N,superfamily_ARM repeat AP2B1 163 genome.wustl.edu 37 17 33963372 33963372 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001030006.1 +1 reviewed p.R390C 1.000 251 0% 118 24.6% 54 24% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Adaptin_N,superfamily_ARM repeat MMP28 79148 genome.wustl.edu 37 17 34097111 34097111 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024302.3 -1 reviewed p.T275M 1.000 10 0% 15 26.7% 3 33.3% - - - NULL TAF15 8148 genome.wustl.edu 37 17 34169397 34169397 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139215.1 +1 reviewed p.K314Q 1.000 603 0% 341 25.5% 345 43.7% probably_damaging(0.978) deleterious(0.05) deleterious(0.766) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD C17orf66 256957 genome.wustl.edu 37 17 34191895 34191895 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152781.2 -1 validated e4-1 0.981 1045 0% 474 20.5% 0 - - - - - RDM1 201299 genome.wustl.edu 37 17 34252631 34252631 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145654.3 -1 reviewed p.G96D 0.018 410 0% 249 21.3% 12 58.3% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_dsRNA-binding domain-like LYZL6 57151 genome.wustl.edu 37 17 34266278 34266278 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020426.1 -1 provisional p.A28V 1.000 183 0% 89 15.7% 0 - possibly_damaging(0.691) tolerated(0.06) deleterious(0.570) HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955 CCL15 6359 genome.wustl.edu 37 17 34325399 34325399 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000394506 -1 known p.P3H 0.000 261 0% 83 19.3% 3 0% - - - HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines ACACA 31 genome.wustl.edu 37 17 35468472 35468472 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198834.1 -1 reviewed p.R2187* 1.000 283 0% 170 23.5% 8 0% - - - HMMPfam_Carboxyl_trans,superfamily_SSF52096 C17orf78 284099 genome.wustl.edu 37 17 35734888 35734888 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173625.3 +1 validated p.E44* 0.002 199 0% 136 14.7% 0 - - - - NULL TADA2A 6871 genome.wustl.edu 37 17 35825625 35825625 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001488.3 +1 reviewed p.K268T 1.000 581 0% 241 20.3% 32 50% possibly_damaging(0.83) tolerated(0.28) neutral(0.347) NULL SYNRG 11276 genome.wustl.edu 37 17 35880752 35880752 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007247.4 -1 reviewed e20-1 1.000 156 0% 80 21.2% 0 - - - - - GPR179 440435 genome.wustl.edu 37 17 36484670 36484670 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004334.2 -1 validated p.P1594 0.964 260 0.4% 234 26.9% 0 - - - - NULL GPR179 440435 genome.wustl.edu 37 17 36489906 36489906 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004334.2 -1 validated p.P600 0.344 268 0% 217 19.8% 0 - - - - HMMPfam_7tm_3 ARHGAP23 57636 genome.wustl.edu 37 17 36638836 36638836 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020876.1 +1 provisional p.R848* 1.000 35 0% 56 37.5% 14 14.2% - - - HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP CISD3 284106 genome.wustl.edu 37 17 36887045 36887045 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136498.1 +1 validated p.W27* 1.000 227 0% 338 24.9% 46 28.2% - - - NULL PCGF2 7703 genome.wustl.edu 37 17 36896639 36896639 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007144.2 -1 reviewed p.R6Q 1.000 103 0% 112 24.1% 28 17.8% benign(0.112) deleterious(0.02) neutral(0.392) superfamily_SSF57850 PLXDC1 57125 genome.wustl.edu 37 17 37295976 37295976 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020405.4 -1 validated p.Q62H 1.000 61 0% 58 20.7% 1 0% possibly_damaging(0.835) deleterious(0.03) deleterious(0.683) NULL CACNB1 782 genome.wustl.edu 37 17 37331848 37331848 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000723.3 -1 reviewed p.M465I 1.000 52 0% 37 21.6% 0 - benign(0) tolerated(0.4) neutral(0.016) NULL CACNB1 782 genome.wustl.edu 37 17 37342314 37342314 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199247.1 -1 reviewed p.E224D 0.928 153 0% 101 18.8% 1 0% benign(0.002) tolerated(1) - superfamily_SH3 STAC2 342667 genome.wustl.edu 37 17 37368632 37368632 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198993.3 -1 validated p.G383 1.000 50 0% 55 29.1% 2 50% - - - superfamily_SH3-domain,HMMPfam_SH3_2 STAC2 342667 genome.wustl.edu 37 17 37373145 37373145 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198993.3 -1 validated p.S168 0.994 386 0% 311 13.5% 0 - - - - NULL FBXL20 84961 genome.wustl.edu 37 17 37427059 37427059 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032875.2 -1 validated p.T293I 1.000 275 0% 172 30.8% 11 27.2% benign(0) tolerated(0.39) neutral(0.016) HMMSmart_SM00367,superfamily_RNI-like MED1 5469 genome.wustl.edu 37 17 37566444 37566444 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004774.3 -1 reviewed p.R677H 1.000 189 0% 155 20% 3 0% unknown(0) deleterious(0) - NULL CDK12 51755 genome.wustl.edu 37 17 37646836 37646836 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016507.2 +1 validated p.P653H 0.992 203 0% 116 22.4% 13 30.7% unknown(0) deleterious(0) - NULL PPP1R1B 84152 genome.wustl.edu 37 17 37786256 37786256 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032192.2 +1 provisional p.S66L 1.000 261 0% 239 25.9% 44 34% benign(0.244) deleterious(0.04) neutral(0.373) HMMPfam_DARPP-32 GSDMB 55876 genome.wustl.edu 37 17 38062411 38062411 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042471.1 -1 reviewed p.A268T 0.000 506 0.2% 217 21.2% 45 48.8% benign(0.002) tolerated(0.58) neutral(0.005) HMMPfam_Gasdermin GSDMA 284110 genome.wustl.edu 37 17 38130578 38130578 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178171.4 +1 validated p.T268 0.047 144 0% 112 14.3% 0 - - - - HMMPfam_Gasdermin PSMD3 5709 genome.wustl.edu 37 17 38152574 38152574 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002809.2 +1 reviewed p.H487Y 1.000 186 0% 154 20.1% 339 36.2% benign(0.005) deleterious(0.05) neutral(0.345) HMMPfam_Rpn3_C MED24 9862 genome.wustl.edu 37 17 38178659 38178659 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422942 -1 known p.R92* 0.002 137 0% 192 22.9% 122 44.2% - - - NULL MED24 9862 genome.wustl.edu 37 17 38188335 38188335 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014815.3 -1 reviewed p.Q315H 1.000 279 0% 210 23.3% 28 35.7% possibly_damaging(0.848) tolerated(0.45) neutral(0.338) NULL THRA 7067 genome.wustl.edu 37 17 38244584 38244584 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003250.4 +1 reviewed p.S271 0.981 69 1.4% 74 24.3% 51 54.9% - - - HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain NR1D1 9572 genome.wustl.edu 37 17 38250217 38250217 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021724.2 -1 provisional p.A531 0.967 78 0% 88 14.8% 48 14.5% - - - HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor NR1D1 9572 genome.wustl.edu 37 17 38251805 38251805 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021724.2 -1 provisional p.Q380H 1.000 305 0% 211 23.2% 42 33.3% probably_damaging(0.967) tolerated(0.56) neutral(0.415) superfamily_Str_ncl_receptor NR1D1 9572 genome.wustl.edu 37 17 38252962 38252962 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021724.2 -1 provisional p.H147 0.890 115 0% 91 23.1% 27 44.4% - - - HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_SSF57716 RAPGEFL1 51195 genome.wustl.edu 37 17 38347000 38347000 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016339.3 +1 validated p.R235* 1.000 78 0% 108 17.6% 10 30% - - - HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF TOP2A 7153 genome.wustl.edu 37 17 38556811 38556811 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001067.2 -1 reviewed p.I923 1.000 463 0% 183 18.6% 21 85.7% - - - HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase TOP2A 7153 genome.wustl.edu 37 17 38564257 38564257 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001067.2 -1 reviewed p.G488* 1.000 230 0% 171 20.5% 11 0% - - - HMMSmart_SM00433,superfamily_Type II DNA topoisomerase LOC100287562 100287562 genome.wustl.edu 37 17 38609407 38609407 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343550.1 -1 model p.S6L 0.000 57 0% 39 28.2% 0 - - - - NULL LOC100287562 100287562 genome.wustl.edu 37 17 38609410 38609410 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343550.1 -1 model p.A5V 0.000 53 0% 38 18.4% 0 - - - - NULL IGFBP4 3487 genome.wustl.edu 37 17 38610179 38610179 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001552.2 +1 reviewed e3-1 0.999 205 0% 129 10.9% 0 - - - - - CCR7 1236 genome.wustl.edu 37 17 38711266 38711266 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001838.2 -1 reviewed p.A289T 0.974 423 0% 209 20.6% 6 0% benign(0.001) tolerated(0.56) neutral(0.006) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like KRT24 192666 genome.wustl.edu 37 17 38856528 38856528 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019016.2 -1 reviewed p.Y321 0.985 165 0.6% 128 25.8% 0 - - - - superfamily_Prefoldin,HMMPfam_Filament KRT39 390792 genome.wustl.edu 37 17 39116742 39116742 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213656.3 -1 reviewed p.Q336 0.983 124 0% 56 10.7% 0 - - - - HMMPfam_Filament KRT39 390792 genome.wustl.edu 37 17 39118805 39118805 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213656.3 -1 reviewed p.S240Y 0.969 331 0.3% 112 14.3% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMPfam_Filament KRTAP4-11 653240 genome.wustl.edu 37 17 39274226 39274226 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033059.3 -1 reviewed p.C114* 0.945 83 0% 57 17.5% 0 - - - - HMMPfam_Keratin_B2 KRT34 3885 genome.wustl.edu 37 17 39538162 39538162 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021013.3 -1 reviewed p.L155I 1.000 119 0% 185 27% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Filament KRT31 3881 genome.wustl.edu 37 17 39553187 39553187 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002277.2 -1 reviewed p.A137S 1.000 345 0% 334 34.7% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMPfam_Filament KRT31 3881 genome.wustl.edu 37 17 39553616 39553616 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002277.2 -1 reviewed p.T59I 1.000 135 0% 145 31% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Filament KRT38 8687 genome.wustl.edu 37 17 39595588 39595588 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006771.3 -1 reviewed p.R200H 0.991 79 0% 83 13.3% 0 - benign(0.074) tolerated(0.14) neutral(0.255) HMMPfam_Filament KRT36 8689 genome.wustl.edu 37 17 39645672 39645672 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003771.4 -1 reviewed p.D149Y 1.000 227 0% 226 11.9% 0 - possibly_damaging(0.826) deleterious(0) deleterious(0.758) HMMPfam_Filament KRT13 3860 genome.wustl.edu 37 17 39661658 39661658 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153490.2 -1 reviewed p.V49M 0.000 553 0% 373 23.9% 0 - unknown(0) tolerated(0.06) - NULL KRT15 3866 genome.wustl.edu 37 17 39670904 39670904 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002275.3 -1 reviewed p.E424* 0.895 273 0% 178 21.9% 0 - - - - NULL KRT15 3866 genome.wustl.edu 37 17 39671835 39671835 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002275.3 -1 reviewed p.R379Q 0.963 208 0% 144 18.1% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament KRT15 3866 genome.wustl.edu 37 17 39673144 39673144 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002275.3 -1 reviewed p.E218 0.994 165 0% 116 17.2% 2 100% - - - superfamily_Prefoldin,HMMPfam_Filament KRT16 3868 genome.wustl.edu 37 17 39767921 39767921 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005557.3 -1 reviewed p.A195D 1.000 129 0% 131 23.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Filament JUP 3728 genome.wustl.edu 37 17 39915080 39915080 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002230.2 -1 reviewed p.N514D 1.000 38 0% 45 20% 325 24.9% probably_damaging(0.993) deleterious(0.01) deleterious(0.856) HMMSmart_ARM,superfamily_ARM-type_fold NT5C3L 115024 genome.wustl.edu 37 17 39981853 39981853 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052935.4 -1 validated p.D267 0.626 49 0% 62 22.6% 88 36.3% - - - HMMPfam_UMPH-1,superfamily_HAD-like ACLY 47 genome.wustl.edu 37 17 40024153 40024153 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001096.2 -1 reviewed p.H1072 0.996 298 0% 328 18.9% 157 38.2% - - - superfamily_Citrate_synthase_core ACLY 47 genome.wustl.edu 37 17 40025730 40025730 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001096.2 -1 reviewed p.S1016 0.036 613 0% 604 20% 125 49.6% - - - superfamily_Citrate_synthase_core ACLY 47 genome.wustl.edu 37 17 40028378 40028378 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001096.2 -1 reviewed p.H900 0.012 130 0% 119 13.4% 85 47% - - - superfamily_Citrate_synthase_core TTC25 83538 genome.wustl.edu 37 17 40117127 40117127 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000377543 +1 known p.D549Y 0.005 207 0.5% 170 27.1% 16 37.5% - - - NULL TTC25 83538 genome.wustl.edu 37 17 40117227 40117227 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000377543 +1 known p.A582V 0.001 279 0% 223 19.7% 13 61.5% - - - NULL CNP 1267 genome.wustl.edu 37 17 40125501 40125501 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033133.4 +1 validated p.K275N 0.975 92 0% 90 21.1% 157 40.1% probably_damaging(0.988) deleterious(0.05) deleterious(0.783) HMMPfam_CNPase,superfamily_LigT-like DHX58 79132 genome.wustl.edu 37 17 40255726 40255726 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024119.2 -1 validated p.V552M 0.983 43 0% 66 13.6% 20 20% probably_damaging(1) tolerated(0.2) deleterious(0.549) NULL KAT2A 2648 genome.wustl.edu 37 17 40269072 40269072 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021078.2 -1 validated p.T582N 1.000 60 0% 50 22% 97 43.2% probably_damaging(0.955) deleterious(0) deleterious(0.843) HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat) GHDC 84514 genome.wustl.edu 37 17 40343051 40343051 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032484.4 -1 validated p.R356H 0.000 41 2.4% 44 18.2% 58 55.1% benign(0.017) tolerated(0.5) neutral(0.011) HMMPfam_GH3 STAT5B 6777 genome.wustl.edu 37 17 40370286 40370286 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012448.3 -1 reviewed p.T351N 1.000 206 0% 199 11.1% 31 19.3% probably_damaging(0.992) deleterious(0) deleterious(0.892) superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind STAT5A 6776 genome.wustl.edu 37 17 40447750 40447750 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003152.3 +1 reviewed p.K163N 1.000 215 0% 227 26.9% 13 15.3% benign(0.27) tolerated(0.05) neutral(0.374) HMMPfam_STAT_alpha,superfamily_STAT ATP6V0A1 535 genome.wustl.edu 37 17 40639277 40639277 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130020.1 +1 reviewed p.H312 0.983 157 0% 57 24.6% 14 28.5% - - - HMMPfam_V_ATPase_I HSD17B1P1 643646 genome.wustl.edu 37 17 40698788 40698788 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000225928 +1 known p.C3R 0.001 44 0% 48 22.9% 1 0% benign(0) tolerated(0.55) neutral(0.007) superfamily_NAD(P)-binding Rossmann-fold domains HSD17B1 3292 genome.wustl.edu 37 17 40705294 40705294 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000413.2 +1 validated p.R84C 0.994 25 0% 23 30.4% 30 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains COASY 80347 genome.wustl.edu 37 17 40715230 40715230 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042532.2 +1 validated p.G226D 1.000 45 0% 72 25% 30 30% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CTP_transf_2,superfamily_SSF52374 COASY 80347 genome.wustl.edu 37 17 40716513 40716513 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042532.2 +1 validated p.R351K 0.000 157 0% 189 23.3% 72 45.8% benign(0) tolerated(0.29) neutral(0.029) HMMPfam_CTP_transf_2,superfamily_SSF52374 TUBG1 7283 genome.wustl.edu 37 17 40765733 40765733 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001070.4 +1 reviewed p.F225L 1.000 393 0% 417 21.1% 247 44.1% benign(0.011) tolerated(0.11) neutral(0.272) HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like TUBG1 7283 genome.wustl.edu 37 17 40766365 40766365 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001070.4 +1 reviewed p.R311C 1.000 166 0% 149 15.4% 121 38.8% probably_damaging(0.985) deleterious(0) deleterious(0.877) superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C TUBG2 27175 genome.wustl.edu 37 17 40818730 40818730 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016437.2 +1 validated p.R423M 0.972 274 0% 303 20.5% 20 45% benign(0) deleterious(0) neutral(0.445) superfamily_Tub_FtsZ_C CNTNAP1 8506 genome.wustl.edu 37 17 40838993 40838993 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003632.2 +1 reviewed p.E325* 1.000 46 0% 43 25.6% 3 33.3% - - - HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 CNTNAP1 8506 genome.wustl.edu 37 17 40848084 40848084 + Missense_Mutation SNP G G A rs192340009 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003632.2 +1 reviewed p.V1130M 0.996 288 0% 236 20.8% 3 66.6% possibly_damaging(0.857) tolerated(0.06) deleterious(0.653) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 EZH1 2145 genome.wustl.edu 37 17 40856673 40856673 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001991.3 -1 validated p.R655H 1.000 213 0% 158 12% 6 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain EZH1 2145 genome.wustl.edu 37 17 40861956 40861956 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001991.3 -1 validated e11-1 1.000 463 0% 194 24.7% 0 - - - - - WNK4 65266 genome.wustl.edu 37 17 40936463 40936463 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032387.4 +1 reviewed p.E346K 1.000 146 0% 195 27.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PSME3 10197 genome.wustl.edu 37 17 40991167 40991167 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176863.1 +1 reviewed p.A207D 1.000 327 0% 271 18.8% 64 32.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PA28_beta,superfamily_Prot_act_regA AOC2 314 genome.wustl.edu 37 17 40997351 40997351 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_009590.2 +1 reviewed p.P236 0.060 83 0% 67 20.9% 1 100% - - - HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region AOC3 8639 genome.wustl.edu 37 17 41004133 41004133 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003734.2 +1 reviewed p.R258H 0.000 43 0% 48 14.6% 4 50% benign(0.001) tolerated(0.25) neutral(0.037) HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg DHX8 1659 genome.wustl.edu 37 17 41577398 41577398 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004941.1 +1 reviewed p.Q491H 1.000 242 0% 101 14.9% 7 42.8% benign(0.009) deleterious(0.03) neutral(0.365) NULL DHX8 1659 genome.wustl.edu 37 17 41594595 41594595 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004941.1 +1 reviewed p.L902 1.000 197 0% 72 16.7% 29 17.2% - - - superfamily_SSF52540 MEOX1 4222 genome.wustl.edu 37 17 41720899 41720899 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004527.3 -1 reviewed p.R200H 1.000 124 0% 145 23.4% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like MEOX1 4222 genome.wustl.edu 37 17 41738729 41738729 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004527.3 -1 reviewed p.A58 0.104 113 0% 79 21.5% 2 50% unknown(0) - - NULL DUSP3 1845 genome.wustl.edu 37 17 41847046 41847046 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004090.3 -1 reviewed p.N163 0.939 87 0% 116 26.7% 20 25% - - - HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II MPP2 4355 genome.wustl.edu 37 17 41956755 41956755 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005374.3 -1 reviewed p.R457Q 0.999 118 0% 132 19.7% 0 - probably_damaging(0.956) deleterious(0.01) deleterious(0.805) HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases MPP2 4355 genome.wustl.edu 37 17 41958119 41958119 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005374.3 -1 reviewed p.R364C 1.000 132 0% 113 17.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases MPP2 4355 genome.wustl.edu 37 17 41958677 41958677 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005374.3 -1 reviewed p.S285I 1.000 113 0% 87 27.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 MPP2 4355 genome.wustl.edu 37 17 41958876 41958876 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005374.3 -1 reviewed p.A255T 0.013 106 0.9% 77 24.7% 1 100% benign(0.004) tolerated(1) - HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 NAGS 162417 genome.wustl.edu 37 17 42083122 42083122 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153006.2 +1 reviewed p.A182T 0.994 29 0% 43 20.9% 4 0% benign(0.004) tolerated(0.4) neutral(0.016) superfamily_Aa_kinase LSM12 124801 genome.wustl.edu 37 17 42143897 42143897 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152344.3 -1 validated p.C20Y 1.000 34 0% 36 13.9% 27 59.2% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL HDAC5 10014 genome.wustl.edu 37 17 42160151 42160151 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015053.1 -1 reviewed p.A835V 0.998 363 0% 309 18.4% 55 29% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase HDAC5 10014 genome.wustl.edu 37 17 42162432 42162432 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015053.1 -1 reviewed p.I715 1.000 64 0% 66 22.7% 26 38.4% - - - HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase HDAC5 10014 genome.wustl.edu 37 17 42170513 42170513 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015053.1 -1 reviewed p.K197N 1.000 190 0% 200 23% 18 50% possibly_damaging(0.605) deleterious(0.01) deleterious(0.615) NULL HDAC5 10014 genome.wustl.edu 37 17 42171119 42171119 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015053.1 -1 reviewed p.R61W 0.998 41 0% 27 37% 6 16.6% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL ASB16 92591 genome.wustl.edu 37 17 42248391 42248391 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080863.4 +1 reviewed p.Q78H 0.998 58 0% 64 25% 1 0% benign(0) tolerated(0.19) neutral(0.050) superfamily_Ankyrin repeat UBTF 7343 genome.wustl.edu 37 17 42285114 42285114 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014233.2 -1 validated p.R660 0.983 200 0% 226 26.1% 116 44.8% - - - superfamily_HMG-box UBTF 7343 genome.wustl.edu 37 17 42287596 42287596 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014233.2 -1 validated p.R508W 1.000 289 0% 360 27.8% 66 48.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00398,superfamily_HMG-box SLC4A1 6521 genome.wustl.edu 37 17 42327833 42327833 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000342.3 -1 reviewed p.P910L 1.000 92 0% 92 29.3% 0 - possibly_damaging(0.586) deleterious(0) deleterious(0.647) NULL SLC4A1 6521 genome.wustl.edu 37 17 42328543 42328543 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000342.3 -1 reviewed p.N880I 0.000 65 0% 43 32.6% 0 - possibly_damaging(0.708) tolerated(0.08) deleterious(0.555) NULL SLC4A1 6521 genome.wustl.edu 37 17 42340221 42340221 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000342.3 -1 reviewed p.Q5R 0.859 187 0% 165 13.9% 0 - benign(0.076) tolerated(0.43) neutral(0.019) NULL ITGA2B 3674 genome.wustl.edu 37 17 42453285 42453285 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000419.3 -1 reviewed p.Q839 0.650 148 0% 127 29.9% 0 - - - - HMMPfam_Integrin_alpha2,superfamily_Integrin domains ITGA2B 3674 genome.wustl.edu 37 17 42462341 42462341 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000419.3 -1 reviewed p.N258 0.000 134 0% 118 17.8% 0 - - - - superfamily_Integrin alpha N-terminal domain GPATCH8 23131 genome.wustl.edu 37 17 42475198 42475198 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002909.1 -1 validated p.I1416S 1.000 772 0% 399 23.6% 27 40.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL GPATCH8 23131 genome.wustl.edu 37 17 42475700 42475700 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002909.1 -1 validated p.D1249N 1.000 184 0% 140 24.3% 7 42.8% probably_damaging(0.978) tolerated(0.48) neutral(0.431) NULL C17orf104 284071 genome.wustl.edu 37 17 42744123 42744123 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145080.2 +1 validated p.E282* 1.000 106 0% 64 17.2% 0 - - - - NULL EFTUD2 9343 genome.wustl.edu 37 17 42971842 42971842 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004247.3 -1 validated p.E16D 1.000 521 0% 295 23.4% 20 25% benign(0.005) tolerated(0.33) neutral(0.024) NULL CCDC103 388389 genome.wustl.edu 37 17 42978398 42978398 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213607.1 +1 provisional p.A11D 0.837 162 0% 145 19.3% 9 66.6% possibly_damaging(0.836) tolerated(0.6) neutral(0.324) NULL GFAP 2670 genome.wustl.edu 37 17 42985444 42985444 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002055.3 -1 reviewed p.M415I 1.000 388 0% 330 20% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL GFAP 2670 genome.wustl.edu 37 17 42990720 42990720 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002055.3 -1 reviewed p.A233T 0.998 92 0% 108 26.9% 0 - benign(0.049) tolerated(0.07) neutral(0.322) HMMPfam_Filament KIF18B 146909 genome.wustl.edu 37 17 43005813 43005813 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080443.1 -1 provisional p.Q622H 0.000 59 0% 56 26.8% 6 66.6% possibly_damaging(0.697) deleterious(0) deleterious(0.695) NULL KIF18B 146909 genome.wustl.edu 37 17 43011394 43011394 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080443.1 -1 provisional p.C320F 1.000 212 0% 131 26% 9 77.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF18B 146909 genome.wustl.edu 37 17 43011677 43011677 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080443.1 -1 provisional p.R270Q 1.000 66 0% 75 30.7% 4 50% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases NMT1 4836 genome.wustl.edu 37 17 43173623 43173623 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021079.3 +1 provisional p.R189Q 1.000 518 0.8% 341 22.6% 45 53.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NMT,superfamily_Acyl-CoA N-acyltransferases (Nat) ENSG00000229966 0 genome.wustl.edu 37 17 43345195 43345195 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438044 +1 known NULL 0.032 72 0% 70 28.6% 2 50% - - - - LOC100288194 100288194 genome.wustl.edu 37 17 43475324 43475324 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343564.1 +1 model p.D355Y 1.000 100 0% 146 11% 12 8.3% - - - NULL PLEKHM1 9842 genome.wustl.edu 37 17 43528086 43528086 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014798.2 -1 reviewed p.L847 1.000 176 0% 137 13.1% 13 30.7% - - - NULL CRHR1 1394 genome.wustl.edu 37 17 43910844 43910844 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145146.1 +1 reviewed p.I319 0.997 259 0% 203 23.6% 1 0% - - - HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like KANSL1 284058 genome.wustl.edu 37 17 44128026 44128026 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015443.2 -1 validated p.P631 1.000 256 0% 76 27.6% 17 35.2% - - - NULL KANSL1 284058 genome.wustl.edu 37 17 44171962 44171962 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015443.2 -1 validated p.Q465 1.000 171 0% 143 25.2% 5 60% - - - NULL KANSL1 284058 genome.wustl.edu 37 17 44248830 44248830 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015443.2 -1 validated p.S227I 1.000 289 0% 151 27.2% 4 50% possibly_damaging(0.708) deleterious(0) deleterious(0.700) NULL LRRC37A2 474170 genome.wustl.edu 37 17 44626598 44626598 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001006607.2 +1 validated p.L1365M 0.005 183 0% 108 9.3% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL WNT3 7473 genome.wustl.edu 37 17 44845901 44845901 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030753.3 -1 reviewed p.E285K 1.000 117 0% 170 23.5% 8 62.5% benign(0.014) tolerated(0.85) neutral(0.001) HMMPfam_wnt,HMMSmart_WNT1 CDC27 996 genome.wustl.edu 37 17 45229176 45229176 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114091.1 -1 reviewed p.T362A 1.000 154 0% 147 21.8% 16 43.7% possibly_damaging(0.882) tolerated(0.2) neutral(0.393) superfamily_TPR-like CDC27 996 genome.wustl.edu 37 17 45234661 45234661 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001114091.1 -1 reviewed p.P189S 1.000 610 0% 636 10.8% 13 53.8% benign(0) tolerated(0.8) neutral(0.001) superfamily_TPR-like ITGB3 3690 genome.wustl.edu 37 17 45367558 45367558 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000212.2 +1 reviewed p.S348N 1.000 544 0% 363 23.4% 12 50% possibly_damaging(0.715) tolerated(0.13) deleterious(0.512) HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains C17orf57 124989 genome.wustl.edu 37 17 45481980 45481980 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152347.3 +1 provisional p.Q738H 0.102 497 0% 499 13.4% 0 - probably_damaging(0.962) tolerated(0.09) deleterious(0.702) NULL TBX21 30009 genome.wustl.edu 37 17 45822626 45822626 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013351.1 +1 reviewed p.R501H 0.996 60 0% 51 23.5% 8 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL OSBPL7 114881 genome.wustl.edu 37 17 45886793 45886793 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145798.2 -1 reviewed p.V644 1.000 141 0.7% 109 13.8% 10 10% - - - HMMPfam_Oxysterol_BP SP2 6668 genome.wustl.edu 37 17 45993881 45993881 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003110.5 +1 reviewed p.V148 0.987 375 0% 240 23.3% 15 33.3% - - - NULL SP2 6668 genome.wustl.edu 37 17 45993977 45993977 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003110.5 +1 reviewed p.K180N 1.000 348 0% 220 25% 14 35.7% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL SP2 6668 genome.wustl.edu 37 17 46000337 46000337 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003110.5 +1 reviewed p.R357C 1.000 65 0% 57 15.8% 14 28.5% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL PNPO 55163 genome.wustl.edu 37 17 46022936 46022936 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018129.3 +1 reviewed p.P125 0.973 228 0% 158 22.8% 28 53.5% - - - superfamily_FMN_binding,HMMPfam_Pyridox_oxidase CDK5RAP3 80279 genome.wustl.edu 37 17 46050977 46050977 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176096.1 +1 reviewed p.P49S 1.000 133 0% 84 22.6% 104 41.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF773 HOXB2 3212 genome.wustl.edu 37 17 46620631 46620631 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002145.3 -1 reviewed p.L290 0.002 22 0% 22 27.3% 16 87.5% - - - NULL TTLL6 284076 genome.wustl.edu 37 17 46874511 46874511 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130918.1 -1 validated p.S275F 1.000 329 0.3% 151 18.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like IGF2BP1 10642 genome.wustl.edu 37 17 47121355 47121355 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006546.3 +1 reviewed p.Q409 1.000 128 0% 105 17.1% 7 28.5% - - - HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) PHB 5245 genome.wustl.edu 37 17 47486517 47486517 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002634.2 -1 reviewed p.R133C 1.000 97 0% 75 29.3% 605 45.2% benign(0.009) deleterious(0) neutral(0.445) HMMPfam_Band_7,HMMSmart_SM00244 LOC100131693 100131693 genome.wustl.edu 37 17 47502186 47502186 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001726582.1 -1 model p.H33 1.000 533 0% 409 22% 14 0% - - - HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e SPOP 8405 genome.wustl.edu 37 17 47677804 47677804 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007226.1 -1 reviewed p.R354H 1.000 148 0% 43 23.3% 52 32.6% probably_damaging(0.997) tolerated(0.34) deleterious(0.489) NULL SLC35B1 10237 genome.wustl.edu 37 17 47780285 47780285 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005827.1 -1 provisional p.S284F 1.000 358 0% 213 28.2% 172 28.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UAA,superfamily_SSF103481 SLC35B1 10237 genome.wustl.edu 37 17 47783578 47783578 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000507773 -1 known p.T101I 1.000 119 0% 81 16% 104 38.4% possibly_damaging(0.952) deleterious(0) deleterious(0.840) NULL FAM117A 81558 genome.wustl.edu 37 17 47799923 47799923 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030802.3 -1 validated p.R134C 0.896 161 0% 103 24.3% 12 25% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL DLX3 1747 genome.wustl.edu 37 17 48069105 48069105 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005220.2 -1 reviewed p.A214T 0.998 381 0% 402 24.4% 0 - benign(0.001) tolerated(0.11) neutral(0.272) NULL ITGA3 3675 genome.wustl.edu 37 17 48145501 48145501 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005501.2 +1 reviewed p.G166S 1.000 95 0% 69 20.3% 56 32.1% possibly_damaging(0.942) tolerated(1) neutral(0.387) superfamily_Integrin alpha N-terminal domain PDK2 5164 genome.wustl.edu 37 17 48183363 48183363 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002611.3 +1 provisional p.Q149 1.000 71 0% 73 24.7% 23 34.7% - - - HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain PDK2 5164 genome.wustl.edu 37 17 48184447 48184447 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002611.3 +1 provisional p.Y205 0.998 257 0% 327 21.4% 33 18.1% - - - superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase COL1A1 1277 genome.wustl.edu 37 17 48266784 48266784 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000088.3 -1 reviewed p.P928H 0.984 73 0% 56 14.3% 434 0.6% unknown(0) deleterious(0.03) - HMMPfam_Collagen XYLT2 64132 genome.wustl.edu 37 17 48432323 48432323 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022167.2 +1 reviewed p.R305G 1.000 82 0% 95 16.8% 11 18.1% benign(0.359) tolerated(0.28) neutral(0.146) HMMPfam_Branch XYLT2 64132 genome.wustl.edu 37 17 48435799 48435799 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022167.2 +1 reviewed p.G725W 1.000 59 0% 82 29.3% 34 38.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MRPL27 51264 genome.wustl.edu 37 17 48445544 48445544 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016504.2 -1 reviewed p.R119K 0.996 236 0% 174 20.1% 218 45.4% benign(0) tolerated(0.76) neutral(0.001) NULL EME1 146956 genome.wustl.edu 37 17 48458231 48458231 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152463.2 +1 reviewed p.E548D 0.256 248 0% 126 19.8% 14 0% benign(0.23) tolerated(0.25) neutral(0.060) NULL ACSF2 80221 genome.wustl.edu 37 17 48549866 48549866 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025149.4 +1 validated p.C467 0.994 247 0% 272 13.2% 28 14.2% - - - HMMPfam_AMP-binding,superfamily_SSF56801 ACSF2 80221 genome.wustl.edu 37 17 48551348 48551348 + Missense_Mutation SNP G G A rs181183793 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025149.4 +1 validated p.A571T 1.000 287 0% 272 22.1% 35 34.2% probably_damaging(0.976) tolerated(0.36) neutral(0.438) superfamily_SSF56801 MYCBPAP 84073 genome.wustl.edu 37 17 48598488 48598488 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032133.4 +1 validated p.D355Y 0.009 158 0% 129 24% 0 - possibly_damaging(0.667) deleterious(0.05) deleterious(0.581) NULL SPATA20 64847 genome.wustl.edu 37 17 48626463 48626463 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508544 +1 known p.L31I 0.996 77 0% 75 20% 41 34.1% - - - NULL SPATA20 64847 genome.wustl.edu 37 17 48628207 48628207 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022827.2 +1 provisional p.P438S 0.972 33 0% 41 24.4% 51 39.2% benign(0.001) tolerated(0.54) neutral(0.007) NULL CACNA1G 8913 genome.wustl.edu 37 17 48649272 48649272 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018896.3 +1 validated p.T207M 1.000 126 0% 140 26.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ANKRD40 91369 genome.wustl.edu 37 17 48774388 48774388 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052855.3 -1 validated p.E291D 0.455 529 0% 316 27.2% 29 51.7% benign(0.123) tolerated(0.46) neutral(0.022) NULL NME1 4830 genome.wustl.edu 37 17 49239140 49239140 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198175.1 +1 reviewed p.G156 0.937 365 0% 277 24.5% 452 46.4% - - - HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK NME1-NME2 654364 genome.wustl.edu 37 17 49247316 49247316 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018136.1 +1 validated p.V198M 1.000 279 0% 294 19.7% 2117 41.3% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK CA10 56934 genome.wustl.edu 37 17 49710963 49710963 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001082533.1 -1 reviewed p.L280M 1.000 206 0% 60 33.3% 0 - possibly_damaging(0.867) tolerated(0.09) deleterious(0.633) HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase KIF2B 84643 genome.wustl.edu 37 17 51900914 51900914 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032559.4 +1 validated p.R174C 0.760 30 0% 25 28% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL KIF2B 84643 genome.wustl.edu 37 17 51900915 51900915 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032559.4 +1 validated p.R174H 0.800 31 0% 26 23.1% 0 - possibly_damaging(0.908) deleterious(0) deleterious(0.806) NULL TOM1L1 10040 genome.wustl.edu 37 17 53037956 53037956 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005486.2 +1 validated p.Q467P 0.000 284 0% 193 22.3% 36 44.4% benign(0) tolerated(0.19) neutral(0.050) NULL HLF 3131 genome.wustl.edu 37 17 53398078 53398078 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002126.4 +1 reviewed p.S242 0.993 65 0% 16 25% 0 - - - - HMMSmart_SM00338,HMMPfam_bZIP_2 DGKE 8526 genome.wustl.edu 37 17 54939264 54939264 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003647.2 +1 reviewed p.T466I 1.000 251 0% 224 18.3% 1 100% benign(0.15) tolerated(0.25) neutral(0.050) HMMPfam_DAGK_acc,HMMSmart_SM00045 TRIM25 7706 genome.wustl.edu 37 17 54969127 54969127 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005082.4 -1 reviewed p.E609 0.976 101 0% 38 23.7% 22 31.8% - - - HMMPfam_SPRY,HMMSmart_SM00449 SCPEP1 59342 genome.wustl.edu 37 17 55065635 55065635 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021626.2 +1 validated p.G177D 0.995 487 0.2% 345 19.4% 25 16% probably_damaging(0.968) deleterious(0) deleterious(0.855) HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases AKAP1 8165 genome.wustl.edu 37 17 55182879 55182879 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003488.3 +1 reviewed p.A18 0.308 158 0% 116 14.7% 8 25% - - - NULL DYNLL2 140735 genome.wustl.edu 37 17 56166572 56166572 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080677.2 +1 validated p.H68Y 1.000 379 0% 334 15% 147 19% probably_damaging(0.98) tolerated(0.06) deleterious(0.746) HMMPfam_Dynein_light,superfamily_DLC,PatternScan_DYNEIN_LIGHT_1 EPX 8288 genome.wustl.edu 37 17 56270749 56270749 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000502.4 +1 reviewed p.R63H 0.000 81 0% 73 16.4% 2 0% benign(0.026) tolerated(0.1) neutral(0.287) NULL LPO 4025 genome.wustl.edu 37 17 56327919 56327919 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006151.2 +1 reviewed p.S239 0.000 187 0.5% 164 22% 0 - - - - HMMPfam_An_peroxidase,superfamily_Peroxidase_super MPO 4353 genome.wustl.edu 37 17 56349125 56349125 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000250.1 -1 reviewed p.D641N 1.000 56 0% 44 50% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases MPO 4353 genome.wustl.edu 37 17 56356854 56356854 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340482 -1 known p.T193I 0.000 20 0% 28 17.9% 0 - unknown(0) - - NULL BZRAP1 9256 genome.wustl.edu 37 17 56403726 56403726 + Silent SNP G G A rs189750642 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004758.2 -1 validated p.N166 0.989 217 0% 314 18.8% 0 - - - - NULL RNF43 54894 genome.wustl.edu 37 17 56435582 56435582 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017763.4 -1 validated p.R519* 0.000 70 0% 69 21.7% 13 53.8% - - - NULL HSF5 124535 genome.wustl.edu 37 17 56557445 56557445 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080439.1 -1 provisional p.S245Y 1.000 453 0% 452 21.2% 0 - probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL MTMR4 9110 genome.wustl.edu 37 17 56572450 56572450 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004687.4 -1 validated p.T1018M 1.000 402 0.2% 321 20.9% 11 81.8% probably_damaging(1) deleterious(0.05) deleterious(0.845) NULL MTMR4 9110 genome.wustl.edu 37 17 56572538 56572538 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004687.4 -1 validated p.Q989* 1.000 341 0% 264 20.1% 9 11.1% - - - NULL MTMR4 9110 genome.wustl.edu 37 17 56581672 56581672 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004687.4 -1 validated p.A493T 1.000 120 0% 117 12% 5 20% possibly_damaging(0.515) tolerated(0.08) deleterious(0.473) superfamily_(Phosphotyrosine protein) phosphatases II TEX14 56155 genome.wustl.edu 37 17 56663179 56663179 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198393.2 -1 reviewed p.R1018M 0.010 371 0% 108 23.1% 0 - possibly_damaging(0.819) deleterious(0) deleterious(0.754) NULL TEX14 56155 genome.wustl.edu 37 17 56690782 56690782 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198393.2 -1 reviewed p.R335 1.000 266 0% 121 22.3% 0 - - - - HMMPfam_Pkinase_Tyr,superfamily_Kinase_like ENSG00000227324 0 genome.wustl.edu 37 17 56738098 56738098 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000453538 -1 known p.A288V 0.354 964 0% 610 21.3% 1 0% - - - HMMPfam_TAP42 ENSG00000227324 0 genome.wustl.edu 37 17 56738218 56738218 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000453538 -1 known p.T248N 0.780 529 0% 381 25.2% 0 - - - - HMMPfam_TAP42 RAD51C 5889 genome.wustl.edu 37 17 56787350 56787350 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058216.1 +1 reviewed p.A279D 1.000 384 0% 133 23.3% 38 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540 RAD51C 5889 genome.wustl.edu 37 17 56811522 56811522 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058216.1 +1 reviewed p.L357S 0.002 226 0% 151 19.9% 59 32.2% benign(0) tolerated(0.71) neutral(0.002) NULL TRIM37 4591 genome.wustl.edu 37 17 57119252 57119252 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005207.2 -1 reviewed p.E559* 1.000 342 0% 416 21.4% 7 0% - - - NULL SKA2 348235 genome.wustl.edu 37 17 57196746 57196746 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182620.3 -1 validated p.R77 0.121 618 0% 465 21.5% 48 39.5% - - - NULL PRR11 55771 genome.wustl.edu 37 17 57247132 57247132 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018304.2 +1 validated p.R7* 0.250 258 0% 319 18.2% 4 50% - - - NULL SMG8 55181 genome.wustl.edu 37 17 57290531 57290531 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018149.6 +1 validated p.L783 1.000 450 0% 336 20.8% 18 72.2% - - - HMMPfam_DUF2146 SMG8 55181 genome.wustl.edu 37 17 57292335 57292335 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018149.6 +1 validated p.R983H 0.999 297 0.3% 209 21.1% 25 52% possibly_damaging(0.902) tolerated(0.06) deleterious(0.679) HMMPfam_DUF2146 DHX40 79665 genome.wustl.edu 37 17 57682880 57682880 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024612.4 +1 reviewed p.R682K 1.000 427 0% 244 23.8% 39 56.4% benign(0.023) deleterious(0.03) neutral(0.365) HMMPfam_DUF1605 CLTC 1213 genome.wustl.edu 37 17 57728563 57728563 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004859.3 +1 reviewed e5-1 1.000 284 0% 142 21.8% 0 - - - - - CLTC 1213 genome.wustl.edu 37 17 57741326 57741326 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004859.3 +1 reviewed p.V498I 1.000 264 0% 67 25.4% 26 46.1% benign(0) tolerated(0.05) neutral(0.345) superfamily_ARM repeat CLTC 1213 genome.wustl.edu 37 17 57742251 57742251 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004859.3 +1 reviewed p.P542H 1.000 327 0% 104 19.2% 30 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat RPS6KB1 6198 genome.wustl.edu 37 17 57987951 57987951 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003161.2 +1 reviewed p.G57E 1.000 486 0% 372 13.2% 11 9% benign(0.003) tolerated(0.24) neutral(0.037) NULL USP32 84669 genome.wustl.edu 37 17 58292001 58292001 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032582.3 -1 validated p.L668M 1.000 296 0% 158 15.2% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1055 APPBP2 10513 genome.wustl.edu 37 17 58577836 58577836 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006380.2 -1 reviewed p.G51* 1.000 237 0% 122 16.4% 8 25% - - - NULL TBX4 9496 genome.wustl.edu 37 17 59560862 59560862 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018488.2 +1 reviewed p.N541K 1.000 137 0% 146 17.1% 0 - benign(0.133) deleterious(0.04) neutral(0.360) NULL BRIP1 83990 genome.wustl.edu 37 17 59761065 59761065 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032043.1 -1 reviewed p.Q1114 0.027 285 0% 231 23.8% 3 0% - - - NULL BRIP1 83990 genome.wustl.edu 37 17 59934475 59934475 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032043.1 -1 reviewed p.F108S 0.995 721 0% 428 15.4% 4 0% benign(0.008) tolerated(0.28) neutral(0.032) HMMSmart_SM00488,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases MED13 9969 genome.wustl.edu 37 17 60038294 60038294 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005121.2 -1 reviewed p.A1805E 1.000 383 0% 228 21.5% 3 33.3% benign(0.308) deleterious(0) deleterious(0.540) HMMPfam_TRAP_240kDa MED13 9969 genome.wustl.edu 37 17 60050099 60050099 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005121.2 -1 reviewed p.R1319Q 1.000 220 0.5% 127 23.6% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TRAP_240kDa MED13 9969 genome.wustl.edu 37 17 60111261 60111261 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005121.2 -1 reviewed p.G234D 1.000 521 0% 310 19.4% 3 66.6% possibly_damaging(0.903) tolerated(0.13) deleterious(0.611) NULL MED13 9969 genome.wustl.edu 37 17 60112894 60112894 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005121.2 -1 reviewed p.Q182 1.000 462 0% 248 22.6% 1 0% - - - NULL ENSG00000188755 0 genome.wustl.edu 37 17 60345071 60345071 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000339120 -1 known p.R271 0.004 319 0% 267 18% 0 - - - - HMMPfam_TBC,HMMSmart_TBC EFCAB3 146779 genome.wustl.edu 37 17 60484399 60484399 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144933.1 +1 validated p.S283 0.005 469 0% 141 15.6% 0 - - - - NULL TLK2 11011 genome.wustl.edu 37 17 60678135 60678135 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006852.3 +1 validated p.Y558* 1.000 361 0.3% 150 14.7% 12 8.3% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MRC2 9902 genome.wustl.edu 37 17 60741989 60741989 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006039.3 +1 validated p.A67T 0.921 96 0% 91 24.2% 5 20% benign(0.009) tolerated(0.67) neutral(0.003) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins MRC2 9902 genome.wustl.edu 37 17 60742200 60742200 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006039.3 +1 validated p.R137L 0.756 31 0% 34 26.5% 10 10% benign(0.269) tolerated(0.3) neutral(0.057) HMMSmart_SM00458,superfamily_Ricin B-like lectins TANC2 26115 genome.wustl.edu 37 17 61457110 61457110 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025185.3 +1 validated p.S798P 1.000 157 1.3% 43 18.6% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL TANC2 26115 genome.wustl.edu 37 17 61495741 61495741 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025185.3 +1 validated p.A1330V 1.000 353 0% 238 24.8% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like TANC2 26115 genome.wustl.edu 37 17 61497418 61497418 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025185.3 +1 validated p.R1359C 1.000 150 0% 81 33.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_TPR-like TANC2 26115 genome.wustl.edu 37 17 61498217 61498217 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025185.3 +1 validated p.S1625N 1.000 73 0% 54 27.8% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL ACE 1636 genome.wustl.edu 37 17 61560410 61560410 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000789.2 +1 reviewed p.L455 0.992 210 0% 241 20.7% 5 0% - - - "HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain" ACE 1636 genome.wustl.edu 37 17 61563949 61563949 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000789.2 +1 reviewed p.T697N 0.963 229 0% 211 21.3% 7 0% possibly_damaging(0.598) tolerated(0.46) neutral(0.219) "HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain" ACE 1636 genome.wustl.edu 37 17 61563987 61563987 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000789.2 +1 reviewed p.N710D 0.932 252 0% 188 19.1% 9 11.1% benign(0) tolerated(0.63) neutral(0.004) "HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain" KCNH6 81033 genome.wustl.edu 37 17 61620977 61620977 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030779.2 +1 reviewed p.G730D 0.098 28 0% 64 26.6% 0 - benign(0.002) deleterious(0.03) neutral(0.364) NULL KCNH6 81033 genome.wustl.edu 37 17 61623048 61623048 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030779.2 +1 reviewed p.A924T 0.125 155 0% 134 21.6% 0 - benign(0) tolerated(0.09) neutral(0.296) NULL DCAF7 10238 genome.wustl.edu 37 17 61628117 61628117 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000310827 +1 known p.R27W 1.000 97 1% 56 30.4% 44 50% probably_damaging(1) tolerated(0.18) deleterious(0.556) superfamily_WD40 repeat-like MAP3K3 4215 genome.wustl.edu 37 17 61766242 61766242 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203351.1 +1 reviewed e11+1 1.000 149 0% 111 16.2% 1 100% - - - - MAP3K3 4215 genome.wustl.edu 37 17 61766927 61766927 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203351.1 +1 reviewed p.R330W 1.000 66 0% 52 30.8% 11 36.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL MAP3K3 4215 genome.wustl.edu 37 17 61767772 61767772 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203351.1 +1 reviewed p.K435N 1.000 155 0% 108 15.7% 14 28.5% probably_damaging(0.986) deleterious(0.05) deleterious(0.780) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MAP3K3 4215 genome.wustl.edu 37 17 61769601 61769601 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203351.1 +1 reviewed e16-1 1.000 113 0% 109 30.3% 0 - - - - - FTSJ3 117246 genome.wustl.edu 37 17 61902465 61902465 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017647.3 -1 reviewed p.K218N 1.000 458 0% 390 25.9% 35 51.4% possibly_damaging(0.947) deleterious(0.04) deleterious(0.740) NULL PSMC5 5705 genome.wustl.edu 37 17 61908717 61908717 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002805.4 +1 reviewed p.L301M 1.000 91 0% 68 30.9% 404 39.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases GH2 2689 genome.wustl.edu 37 17 61958060 61958060 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022557.2 -1 reviewed p.C176 0.000 208 0% 186 26.9% 0 - - - - NULL CSH1 1442 genome.wustl.edu 37 17 61972415 61972415 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001317.3 -1 reviewed p.Q207 1.000 371 0.3% 173 23.1% 0 - - - - HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_2 CSH1 1442 genome.wustl.edu 37 17 61972543 61972543 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022640.2 -1 reviewed p.P249L 0.993 311 0% 174 21.3% 0 - benign(0.001) tolerated(0.58) neutral(0.005) NULL CSH1 1442 genome.wustl.edu 37 17 61972887 61972887 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022640.2 -1 reviewed p.S134 0.316 308 0% 156 21.2% 0 - - - - HMMPfam_Hormone_1,superfamily_4_helix_cytokine CSHL1 1444 genome.wustl.edu 37 17 61988207 61988207 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022579.1 -1 reviewed p.V30I 0.612 139 0% 87 24.1% 0 - benign(0.012) tolerated(1) neutral(0.001) HMMPfam_Hormone_1,superfamily_4-helical cytokines GH1 2688 genome.wustl.edu 37 17 61994783 61994783 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441409 -1 known p.T179M 0.648 687 0% 331 20.8% 0 - - - - NULL SCN4A 6329 genome.wustl.edu 37 17 62019203 62019203 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000334.4 -1 reviewed p.P1480H 1.000 365 0% 218 22% 0 - possibly_damaging(0.945) deleterious(0) deleterious(0.834) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN4A 6329 genome.wustl.edu 37 17 62028828 62028828 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000334.4 -1 reviewed p.T937S 0.997 172 0% 165 18.8% 0 - benign(0.076) tolerated(0.82) neutral(0.006) HMMPfam_Na_trans_assoc TEX2 55852 genome.wustl.edu 37 17 62291475 62291475 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018469.3 -1 validated p.A35T 1.000 337 0.3% 119 9.2% 3 0% benign(0.001) tolerated(0.67) neutral(0.003) NULL DDX5 1655 genome.wustl.edu 37 17 62499114 62499114 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004396.3 -1 validated p.L305F 0.987 423 0% 475 24% 374 33.9% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases CEP95 90799 genome.wustl.edu 37 17 62529305 62529305 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138363.1 +1 provisional p.R638I 1.000 308 0% 76 18.4% 19 36.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SMURF2 64750 genome.wustl.edu 37 17 62558898 62558898 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022739.3 -1 validated p.E401D 1.000 183 0% 117 16.2% 8 62.5% benign(0.246) tolerated(0.38) neutral(0.043) superfamily_HECT LOC100289243 100289243 genome.wustl.edu 37 17 62747377 62747377 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343577.1 +1 model p.Y283 1.000 259 0% 122 16.4% 6 33.3% - - - HMMPfam_Sec63,HMMSmart_SM00611 RGS9 8787 genome.wustl.edu 37 17 63193261 63193261 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003835.3 +1 reviewed p.K293T 1.000 188 0% 69 20.3% 0 - probably_damaging(0.969) deleterious(0.01) deleterious(0.817) superfamily_Regulator of G-protein signaling RGS AXIN2 8313 genome.wustl.edu 37 17 63532495 63532495 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004655.3 -1 reviewed p.A695V 1.000 57 0% 56 17.9% 4 0% benign(0.406) tolerated(0.12) neutral(0.391) NULL CEP112 201134 genome.wustl.edu 37 17 63685297 63685297 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145036.3 -1 validated p.R883* 0.998 513 0% 146 22.6% 3 0% - - - NULL CEP112 201134 genome.wustl.edu 37 17 64173053 64173053 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145036.3 -1 validated p.N64 0.866 235 0% 155 21.9% 2 0% - - - NULL HELZ 9931 genome.wustl.edu 37 17 65103794 65103794 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014877.3 -1 validated p.D1578N 1.000 214 0% 139 20.1% 11 45.4% unknown(0) deleterious(0.03) - NULL HELZ 9931 genome.wustl.edu 37 17 65105279 65105279 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014877.3 -1 validated p.S1481I 1.000 154 0% 121 27.3% 5 60% unknown(0) deleterious(0) - NULL HELZ 9931 genome.wustl.edu 37 17 65141982 65141982 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014877.3 -1 validated p.E882 1.000 173 0% 74 31.1% 2 50% - - - superfamily_SSF52540 PSMD12 5718 genome.wustl.edu 37 17 65337107 65337107 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002816.3 -1 reviewed p.R408I 1.000 334 0% 212 19.8% 72 48.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PCI,HMMSmart_PINT,superfamily_SSF46785 BPTF 2186 genome.wustl.edu 37 17 65850537 65850537 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182641.3 +1 reviewed p.Q365H 1.000 423 0% 178 29.8% 5 20% probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL BPTF 2186 genome.wustl.edu 37 17 65916173 65916173 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182641.3 +1 reviewed p.R1824M 1.000 508 0% 173 26.6% 5 20% probably_damaging(0.998) deleterious(0.05) deleterious(0.820) NULL ENSG00000154251 0 genome.wustl.edu 37 17 66124226 66124226 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000284414 -1 known p.I53 0.001 203 0% 150 25.3% 15 26.6% - - - NULL SLC16A6 9120 genome.wustl.edu 37 17 66267201 66267201 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004694.4 -1 validated p.I367S 0.316 341 0% 175 14.3% 1 0% benign(0.001) tolerated(0.17) neutral(0.059) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter ARSG 22901 genome.wustl.edu 37 17 66381275 66381275 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014960.3 +1 validated p.G351 0.994 107 0% 67 23.9% 2 50% - - - HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core WIPI1 55062 genome.wustl.edu 37 17 66417926 66417926 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017983.5 -1 validated p.T443 0.997 620 0% 326 25.2% 27 11.1% - - - NULL ABCA8 10351 genome.wustl.edu 37 17 66865863 66865863 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.Q1523 0.750 236 0% 93 15.1% 0 - - - - NULL ABCA8 10351 genome.wustl.edu 37 17 66872657 66872657 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.V1398 0.228 216 0% 164 22% 0 - - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA8 10351 genome.wustl.edu 37 17 66878082 66878082 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.A1250T 0.039 389 0% 272 21.7% 0 - benign(0.004) tolerated(0.58) neutral(0.005) superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA8 10351 genome.wustl.edu 37 17 66878855 66878855 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.S1198Y 1.000 480 0% 417 25.2% 0 - benign(0) tolerated(0.06) neutral(0.323) NULL ABCA8 10351 genome.wustl.edu 37 17 66899557 66899557 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.L788F 0.014 362 0% 165 17% 0 - benign(0.016) tolerated(0.31) neutral(0.028) NULL ABCA8 10351 genome.wustl.edu 37 17 66903923 66903923 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.L706F 0.997 731 0% 332 19.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ABCA8 10351 genome.wustl.edu 37 17 66913552 66913552 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007168.2 -1 reviewed p.A656 0.697 140 0% 100 19% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA9 10350 genome.wustl.edu 37 17 66987079 66987079 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080283.3 -1 reviewed p.A1246T 0.000 433 0% 238 18.1% 0 - benign(0) tolerated(0.53) neutral(0.007) NULL ABCA9 10350 genome.wustl.edu 37 17 67014699 67014699 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080283.3 -1 reviewed p.S874R 0.001 177 0% 98 16.3% 1 0% possibly_damaging(0.604) tolerated(0.07) deleterious(0.528) NULL ABCA9 10350 genome.wustl.edu 37 17 67029941 67029941 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080283.3 -1 reviewed p.A401D 0.051 337 0% 83 21.7% 0 - possibly_damaging(0.927) deleterious(0.04) deleterious(0.724) NULL ABCA10 10349 genome.wustl.edu 37 17 67149637 67149637 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080282.3 -1 reviewed p.T1339I 0.036 166 0% 87 13.8% 0 - benign(0.119) tolerated(0.05) neutral(0.355) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA5 23461 genome.wustl.edu 37 17 67251756 67251756 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018672.3 -1 reviewed p.L1332F 1.000 106 0% 40 22.5% 3 33.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC39A11 201266 genome.wustl.edu 37 17 70645395 70645395 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139177.3 -1 validated p.I228 1.000 116 0% 108 23.1% 12 33.3% - - - HMMPfam_Zip SSTR2 6752 genome.wustl.edu 37 17 71165609 71165609 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001050.2 +1 reviewed p.F51V 1.000 370 0% 333 21.3% 1 0% probably_damaging(0.998) tolerated(0.54) deleterious(0.482) superfamily_Family A G protein-coupled receptor-like SDK2 54549 genome.wustl.edu 37 17 71344833 71344833 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144952.1 -1 provisional p.H2024N 0.999 126 0% 111 18% 0 - benign(0) tolerated(0.63) neutral(0.004) NULL SDK2 54549 genome.wustl.edu 37 17 71346842 71346842 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144952.1 -1 provisional p.F1949S 1.000 285 0% 160 19.4% 0 - probably_damaging(0.997) tolerated(0.42) deleterious(0.480) NULL SDK2 54549 genome.wustl.edu 37 17 71357849 71357849 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144952.1 -1 provisional p.A1814V 1.000 119 0% 125 15.2% 1 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL GPR142 350383 genome.wustl.edu 37 17 72368462 72368462 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181790.1 +1 provisional p.A371V 1.000 100 0% 74 27% 0 - probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_7tm_1,superfamily_SSF81321 GPRC5C 55890 genome.wustl.edu 37 17 72436911 72436911 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022036.2 +1 reviewed p.K377N 0.998 189 0% 212 16.5% 229 42.7% benign(0.012) tolerated(0.55) neutral(0.007) NULL CD300C 10871 genome.wustl.edu 37 17 72539033 72539033 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006678.3 -1 provisional p.R165I 0.000 122 0% 73 19.2% 7 0% benign(0.428) tolerated(0.16) neutral(0.199) NULL CD300LD 100131439 genome.wustl.edu 37 17 72576160 72576160 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001115152.1 -1 provisional p.R189I 0.166 189 0% 110 15.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CD300LF 146722 genome.wustl.edu 37 17 72694589 72694589 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139018.3 -1 validated p.P160T 0.419 174 0.6% 93 18.3% 5 0% unknown(0) deleterious(0.01) - NULL GRIN2C 2905 genome.wustl.edu 37 17 72840467 72840467 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000835.3 -1 reviewed p.R844H 1.000 98 0% 118 22% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GRIN2C 2905 genome.wustl.edu 37 17 72840565 72840565 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000835.3 -1 reviewed p.D811 1.000 201 0% 275 20.4% 0 - - - - HMMPfam_Lig_chan USH1G 124590 genome.wustl.edu 37 17 72915758 72915758 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173477.2 -1 reviewed p.P391 0.259 14 0% 23 21.7% 0 - - - - HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology USH1G 124590 genome.wustl.edu 37 17 72916249 72916249 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173477.2 -1 reviewed p.E228K 1.000 26 0% 17 29.4% 0 - benign(0.15) tolerated(0.14) neutral(0.263) NULL C17orf28 283987 genome.wustl.edu 37 17 72952039 72952039 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030630.2 -1 validated p.L495P 1.000 216 0% 204 16.2% 45 35.5% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_Hid1 C17orf28 283987 genome.wustl.edu 37 17 72956240 72956240 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030630.2 -1 validated p.E278K 1.000 122 0% 110 20% 28 46.4% possibly_damaging(0.713) tolerated(0.08) deleterious(0.557) HMMPfam_Hid1 C17orf28 283987 genome.wustl.edu 37 17 72958355 72958355 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030630.2 -1 validated p.Q195H 0.998 64 0% 73 28.8% 30 33.3% possibly_damaging(0.568) deleterious(0.01) deleterious(0.600) HMMPfam_Hid1 C17orf28 283987 genome.wustl.edu 37 17 72958369 72958369 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030630.2 -1 validated p.A191T 1.000 44 0% 60 20% 33 63.6% probably_damaging(0.984) deleterious(0.03) deleterious(0.795) HMMPfam_Hid1 CDR2L 30850 genome.wustl.edu 37 17 72995618 72995618 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014603.2 +1 validated p.E33D 1.000 280 0% 259 24.3% 29 44.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CDR2L 30850 genome.wustl.edu 37 17 72997485 72997485 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014603.2 +1 validated p.A81V 1.000 50 0% 60 26.7% 56 42.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL SLC16A5 9121 genome.wustl.edu 37 17 73100203 73100203 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004695.2 +1 provisional p.A431V 0.000 144 0% 120 23.3% 65 38.4% benign(0.01) tolerated(0.25) neutral(0.037) NULL HN1 51155 genome.wustl.edu 37 17 73132262 73132262 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002032.1 -1 validated p.W127* 0.997 34 0% 30 36.7% 364 40.3% - - - NULL NUP85 79902 genome.wustl.edu 37 17 73231291 73231291 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024844.3 +1 reviewed p.L622F 0.002 419 0% 243 18.9% 95 40% benign(0) tolerated(0.93) - NULL GGA3 23163 genome.wustl.edu 37 17 73238450 73238450 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138619.2 -1 reviewed p.E238D 1.000 348 0.3% 261 26.1% 17 64.7% benign(0.005) tolerated(0.58) neutral(0.005) HMMPfam_GAT,superfamily_GAT-like domain GGA3 23163 genome.wustl.edu 37 17 73238920 73238920 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138619.2 -1 reviewed p.V201M 1.000 155 0% 146 17.1% 7 14.2% possibly_damaging(0.947) deleterious(0) deleterious(0.835) superfamily_GAT-like domain GGA3 23163 genome.wustl.edu 37 17 73240784 73240784 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138619.2 -1 reviewed p.C72 0.912 253 0% 171 19.3% 9 22.2% - - - HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288 KIAA0195 9772 genome.wustl.edu 37 17 73481579 73481579 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014738.4 +1 validated p.A32V 0.998 144 0.7% 76 23.7% 7 28.5% benign(0) tolerated(0.31) neutral(0.027) NULL KIAA0195 9772 genome.wustl.edu 37 17 73484182 73484182 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014738.4 +1 validated p.G193 1.000 232 0% 187 24.1% 20 55% - - - NULL RECQL5 9400 genome.wustl.edu 37 17 73626324 73626324 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004259.5 -1 validated p.E584 0.868 136 0% 159 10.1% 9 22.2% - - - NULL RECQL5 9400 genome.wustl.edu 37 17 73626893 73626893 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004259.5 -1 validated p.A537V 0.998 52 0% 89 18% 10 40% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL RECQL5 9400 genome.wustl.edu 37 17 73657054 73657054 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004259.5 -1 validated p.V323M 1.000 285 0% 150 22.7% 9 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases ITGB4 3691 genome.wustl.edu 37 17 73726522 73726522 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000213.3 +1 reviewed p.L313 1.000 56 0% 63 17.5% 107 55.1% - - - HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like ITGB4 3691 genome.wustl.edu 37 17 73751882 73751882 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000213.3 +1 reviewed p.C1553 0.855 19 0% 30 40% 298 48.3% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ITGB4 3691 genome.wustl.edu 37 17 73752900 73752900 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000213.3 +1 reviewed p.I1671 1.000 87 0% 95 27.4% 319 44.2% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III UNK 85451 genome.wustl.edu 37 17 73808286 73808286 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080419.1 +1 provisional p.S212 0.475 167 0% 179 26.8% 14 50% - - - HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger TRIM65 201292 genome.wustl.edu 37 17 73888505 73888505 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173547.2 -1 validated p.T196M 0.000 96 0% 108 10.2% 19 5.2% benign(0.16) tolerated(0.07) neutral(0.334) NULL FBF1 85302 genome.wustl.edu 37 17 73918086 73918086 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080542.1 -1 provisional p.A474D 0.011 160 0% 144 11.8% 10 20% possibly_damaging(0.889) deleterious(0) deleterious(0.794) NULL FBF1 85302 genome.wustl.edu 37 17 73919315 73919315 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080542.1 -1 provisional p.S444Y 0.000 43 0% 49 12.2% 6 16.6% possibly_damaging(0.46) deleterious(0.04) deleterious(0.500) NULL ACOX1 51 genome.wustl.edu 37 17 73945430 73945430 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004035.6 -1 reviewed p.H532Q 1.000 343 0% 226 23% 17 58.8% possibly_damaging(0.644) tolerated(0.34) neutral(0.248) HMMPfam_ACOX,superfamily_AcylCoADH_C_like ACOX1 51 genome.wustl.edu 37 17 73975104 73975104 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004035.6 -1 reviewed p.E17D 1.000 44 0% 60 35% 7 42.8% benign(0.003) tolerated(0.15) neutral(0.241) superfamily_AcylCoA_dehyd_NM EVPL 2125 genome.wustl.edu 37 17 74005673 74005673 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001988.2 -1 validated p.E1205K 0.995 61 0% 75 18.7% 30 53.3% probably_damaging(0.996) tolerated(0.47) deleterious(0.473) HMMSmart_SM00250 SRP68 6730 genome.wustl.edu 37 17 74066489 74066489 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014230.2 -1 reviewed p.G74D 1.000 386 0% 450 22.4% 35 51.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL EXOC7 23265 genome.wustl.edu 37 17 74080609 74080609 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145297.2 -1 validated p.P640S 0.998 367 0% 395 25.6% 60 38.3% benign(0.293) tolerated(0.48) neutral(0.101) HMMPfam_Exo70 RNF157 114804 genome.wustl.edu 37 17 74151703 74151703 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052916.2 -1 validated p.E546D 0.970 71 0% 50 18% 1 0% probably_damaging(0.994) tolerated(0.19) deleterious(0.502) NULL QRICH2 84074 genome.wustl.edu 37 17 74275484 74275484 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032134.1 -1 provisional p.L1426I 0.999 122 0.8% 109 20.2% 6 50% benign(0.243) tolerated(0.68) neutral(0.027) NULL QRICH2 84074 genome.wustl.edu 37 17 74287325 74287325 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032134.1 -1 provisional p.V995 0.004 107 0% 92 15.2% 0 - - - - NULL QRICH2 84074 genome.wustl.edu 37 17 74287512 74287512 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032134.1 -1 provisional p.A933V 0.008 90 0% 68 33.8% 1 100% possibly_damaging(0.948) deleterious(0) deleterious(0.836) NULL UBE2O 63893 genome.wustl.edu 37 17 74388045 74388045 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022066.3 -1 validated p.N1032 1.000 168 0% 153 22.2% 19 26.3% - - - HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like UBE2O 63893 genome.wustl.edu 37 17 74394341 74394341 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022066.3 -1 validated p.D674N 0.906 195 0% 153 19.6% 17 17.6% benign(0) tolerated(0.38) neutral(0.018) NULL CYGB 114757 genome.wustl.edu 37 17 74527187 74527187 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134268.3 -1 validated p.E138G 0.999 38 0% 49 24.5% 6 0% benign(0.121) tolerated(0.17) neutral(0.068) superfamily_Globin-like ST6GALNAC1 55808 genome.wustl.edu 37 17 74621457 74621457 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018414.3 -1 validated p.R586 0.982 105 0% 103 16.5% 38 36.8% - - - HMMPfam_Glyco_transf_29 SEC14L1 6397 genome.wustl.edu 37 17 75192345 75192345 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039573.2 +1 reviewed p.S257R 1.000 179 0% 108 22.2% 28 28.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain SEC14L1 6397 genome.wustl.edu 37 17 75208058 75208058 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039573.2 +1 reviewed p.S546 0.837 203 0% 163 13.5% 59 22% - - - superfamily_Supernatant protein factor (SPF) C-terminal domain SEC14L1 6397 genome.wustl.edu 37 17 75209491 75209491 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039573.2 +1 reviewed p.D653 1.000 55 0% 58 15.5% 83 13.2% - - - superfamily_Supernatant protein factor (SPF) C-terminal domain TNRC6C 57690 genome.wustl.edu 37 17 76046060 76046060 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142640.1 +1 validated p.P306H 1.000 130 0.8% 111 26.1% 2 50% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) NULL TMC6 11322 genome.wustl.edu 37 17 76120198 76120198 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127198.1 -1 reviewed p.P318 0.150 55 0% 68 27.9% 54 35.1% - - - NULL TMC6 11322 genome.wustl.edu 37 17 76122650 76122650 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127198.1 -1 reviewed p.A46T 0.003 87 0% 158 27.2% 22 31.8% unknown(0) tolerated(0.06) - NULL SYNGR2 9144 genome.wustl.edu 37 17 76167045 76167045 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004710.3 +1 reviewed p.A83T 0.977 158 0% 184 26.1% 421 41.3% benign(0.024) tolerated(0.09) neutral(0.297) HMMPfam_MARVEL TK1 7083 genome.wustl.edu 37 17 76170993 76170993 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003258.4 -1 validated p.V184 1.000 91 0% 102 11.8% 93 32.2% - - - HMMPfam_TK,PatternScan_TK_CELLULAR_TYPE BIRC5 332 genome.wustl.edu 37 17 76210869 76210869 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012271.1 +1 reviewed p.I74V 0.890 47 0% 55 12.7% 39 12.8% benign(0) tolerated(0.51) neutral(0.009) HMMPfam_BIR,HMMSmart_BIR,superfamily_SSF57924 DNAH17 8632 genome.wustl.edu 37 17 76440827 76440827 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389840 -1 known p.S3782Y 0.973 172 0% 197 21.8% 0 - probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_Dynein_heavy DNAH17 8632 genome.wustl.edu 37 17 76449424 76449424 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389840 -1 known e64+1 1.000 189 0% 149 22.1% 0 - - - - - DNAH17 8632 genome.wustl.edu 37 17 76471850 76471850 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389840 -1 known p.G2726 0.001 333 0% 283 27.2% 0 - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH17 8632 genome.wustl.edu 37 17 76481745 76481745 + Missense_Mutation SNP G G A rs139963298 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389840 -1 known p.A2443V 1.000 156 0% 181 24.9% 0 - benign(0.093) deleterious(0) neutral(0.452) superfamily_P-loop containing nucleoside triphosphate hydrolases DNAH17 8632 genome.wustl.edu 37 17 76528794 76528794 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389840 -1 known p.L962I 0.934 136 0% 116 12.1% 0 - benign(0.011) tolerated(0.81) neutral(0.001) NULL DNAH17 8632 genome.wustl.edu 37 17 76556927 76556927 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389840 -1 known p.Q642H 0.993 69 0% 54 24.1% 1 0% benign(0.001) tolerated(0.09) neutral(0.296) HMMPfam_DHC_N1 CYTH1 9267 genome.wustl.edu 37 17 76705780 76705780 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004762.2 -1 reviewed p.E19 0.968 366 0% 245 24.1% 14 14.2% - - - NULL USP36 57602 genome.wustl.edu 37 17 76794559 76794559 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025090.3 -1 validated p.R1105 0.975 462 0% 500 23% 31 48.3% - - - NULL USP36 57602 genome.wustl.edu 37 17 76809894 76809894 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025090.3 -1 validated p.V409A 1.000 264 0% 217 20.3% 14 35.7% unknown(0) tolerated(0.06) - HMMPfam_UCH,superfamily_SSF54001 CANT1 124583 genome.wustl.edu 37 17 76993333 76993333 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138793.3 -1 reviewed p.T124 0.994 92 0% 110 27.3% 9 22.2% - - - HMMPfam_Apyrase,superfamily_Apyrase CANT1 124583 genome.wustl.edu 37 17 76993522 76993522 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138793.3 -1 reviewed p.S61 0.015 18 0% 13 30.8% 7 14.2% - - - NULL CANT1 124583 genome.wustl.edu 37 17 76993619 76993619 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138793.3 -1 reviewed p.A29V 1.000 33 0% 45 31.1% 14 35.7% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL RBFOX3 146713 genome.wustl.edu 37 17 77092762 77092762 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001082575.1 -1 validated p.Q256 1.000 266 0% 277 20.6% 2 0% - - - NULL CBX2 84733 genome.wustl.edu 37 17 77755582 77755582 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005189.2 +1 reviewed p.S90 0.997 72 0% 85 24.7% 0 - - - - NULL CBX2 84733 genome.wustl.edu 37 17 77757578 77757578 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005189.2 +1 reviewed p.S112 0.988 192 0% 179 15.6% 1 0% - - - NULL CBX2 84733 genome.wustl.edu 37 17 77758299 77758299 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005189.2 +1 reviewed p.L353I 1.000 19 0% 15 33.3% 2 50% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL CCDC40 55036 genome.wustl.edu 37 17 78022464 78022464 + Silent SNP C C T rs183808038 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017950.2 +1 validated p.T253 0.000 325 0% 248 19.8% 3 33.3% - - - NULL SGSH 6448 genome.wustl.edu 37 17 78184615 78184615 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000199.3 -1 reviewed p.R382Q 0.000 327 0% 225 11.1% 31 16.1% benign(0.002) tolerated(0.51) neutral(0.009) HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core RNF213 57674 genome.wustl.edu 37 17 78265610 78265610 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020954.2 +1 validated p.S485 0.000 143 0% 122 9.8% 3 0% - - - NULL RNF213 57674 genome.wustl.edu 37 17 78302195 78302195 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508628 +1 known p.E1145 0.000 510 0% 266 21.1% 4 50% - - - NULL RNF213 57674 genome.wustl.edu 37 17 78305881 78305881 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508628 +1 known p.R1198I 0.000 113 0% 88 27.3% 7 28.5% benign(0.129) tolerated(0.08) neutral(0.311) NULL RNF213 57674 genome.wustl.edu 37 17 78350686 78350686 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000508628 +1 known p.A4478V 0.295 313 0% 227 26.9% 64 42.1% possibly_damaging(0.527) deleterious(0.01) deleterious(0.584) NULL ENDOV 284131 genome.wustl.edu 37 17 78395685 78395685 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173627.3 +1 validated p.L96M 1.000 139 0% 152 15.8% 8 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Endonuclease_5 RPTOR 57521 genome.wustl.edu 37 17 78727927 78727927 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020761.2 +1 reviewed p.L258I 1.000 172 0% 130 27.7% 5 40% probably_damaging(0.997) tolerated(0.06) deleterious(0.788) NULL RPTOR 57521 genome.wustl.edu 37 17 78914381 78914381 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020761.2 +1 reviewed p.A1002V 0.971 77 0% 60 30% 12 41.6% possibly_damaging(0.454) tolerated(0.14) neutral(0.398) superfamily_WD40 repeat-like AATK 9625 genome.wustl.edu 37 17 79094935 79094935 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080395.2 -1 reviewed p.A934V 0.624 24 0% 23 30.4% 0 - probably_damaging(0.979) deleterious(0.01) deleterious(0.828) NULL LOC388428 388428 genome.wustl.edu 37 17 79154982 79154982 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_027255.1 +1 validated NULL 0.000 65 0% 90 23.3% 0 - - - - - AZI1 22994 genome.wustl.edu 37 17 79172765 79172765 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014984.2 -1 validated p.G400D 0.000 50 0% 59 33.9% 15 26.6% benign(0.318) tolerated(0.8) neutral(0.100) NULL BAHCC1 57597 genome.wustl.edu 37 17 79414846 79414846 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080519.2 +1 inferred p.A1261T 0.995 21 0% 26 23.1% 0 - - - - NULL CCDC137 339230 genome.wustl.edu 37 17 79639146 79639146 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199287.2 +1 validated p.E207D 0.994 85 0% 89 27% 36 44.4% probably_damaging(0.979) tolerated(0.26) neutral(0.456) NULL ARL16 339231 genome.wustl.edu 37 17 79650071 79650071 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040025.1 -1 validated p.S93N 1.000 151 0% 222 19.8% 43 39.5% benign(0.137) tolerated(1) neutral(0.011) HMMPfam_Arf,superfamily_SSF52540 HGS 9146 genome.wustl.edu 37 17 79653396 79653396 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004712.3 +1 provisional p.H59 0.849 332 0% 379 22.7% 53 45.2% - - - HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288 HGS 9146 genome.wustl.edu 37 17 79658493 79658493 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004712.3 +1 provisional p.C185Y 0.998 100 0% 118 26.3% 45 46.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger P4HB 5034 genome.wustl.edu 37 17 79803079 79803079 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000918.3 -1 reviewed p.L463M 0.995 229 0% 240 21.7% 735 38.6% probably_damaging(0.965) deleterious(0.01) deleterious(0.812) superfamily_Thioredoxin-like,HMMPfam_Thioredoxin ALYREF 10189 genome.wustl.edu 37 17 79846412 79846412 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005782.3 -1 reviewed p.R189W 1.000 138 0% 156 16.7% 334 23.3% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) superfamily_SSF54928 PCYT2 5833 genome.wustl.edu 37 17 79862805 79862805 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002861.3 -1 reviewed p.A358 0.000 85 0% 133 18% 97 39.1% - - - superfamily_Nucleotidylyl transferase SIRT7 51547 genome.wustl.edu 37 17 79870317 79870317 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016538.1 -1 reviewed p.R393H 1.000 203 0% 213 25.8% 26 42.3% possibly_damaging(0.923) tolerated(0.15) deleterious(0.613) NULL SIRT7 51547 genome.wustl.edu 37 17 79870464 79870464 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016538.1 -1 reviewed p.A344V 0.998 79 1.3% 90 28.9% 38 31.5% benign(0.418) deleterious(0.01) deleterious(0.541) superfamily_DHS-like NAD/FAD-binding domain PYCR1 5831 genome.wustl.edu 37 17 79893236 79893236 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006907.2 -1 reviewed p.V99I 0.997 63 0% 90 27.8% 99 48.4% benign(0.012) tolerated(0.43) neutral(0.014) HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains NOTUM 147111 genome.wustl.edu 37 17 79916864 79916864 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178493.5 -1 validated p.G160 0.681 120 0% 163 22.1% 1 0% - - - HMMPfam_PAE LRRC45 201255 genome.wustl.edu 37 17 79987953 79987953 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144999.2 +1 provisional p.A503S 0.612 12 0% 14 28.6% 62 37% benign(0.282) tolerated(0.39) neutral(0.102) NULL DCXR 51181 genome.wustl.edu 37 17 79994125 79994125 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016286.2 -1 validated p.W191C 0.941 90 0% 118 21.2% 239 30.1% possibly_damaging(0.914) deleterious(0) deleterious(0.810) superfamily_NAD(P)-bd GPS1 2873 genome.wustl.edu 37 17 80011917 80011917 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212492.1 +1 reviewed p.E140D 0.994 47 0% 75 28% 116 38.7% benign(0.021) tolerated(0.52) neutral(0.010) NULL FASN 2194 genome.wustl.edu 37 17 80038255 80038255 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004104.4 -1 reviewed p.A2346 0.994 41 0% 46 13% 91 4.3% - - - HMMPfam_Thioesterase,superfamily_alpha/beta-Hydrolases FASN 2194 genome.wustl.edu 37 17 80042425 80042425 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004104.4 -1 reviewed p.L1578 1.000 61 0% 52 17.3% 45 77.7% - - - superfamily_GroES-like FASN 2194 genome.wustl.edu 37 17 80044956 80044956 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004104.4 -1 reviewed p.A1133T 0.019 39 0% 49 20.4% 21 19% benign(0) tolerated(0.58) neutral(0.005) NULL FASN 2194 genome.wustl.edu 37 17 80045871 80045871 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004104.4 -1 reviewed p.R942H 0.004 31 0% 35 22.9% 22 59% benign(0.002) tolerated(0.25) neutral(0.037) NULL FASN 2194 genome.wustl.edu 37 17 80046680 80046680 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004104.4 -1 reviewed p.L793 1.000 33 0% 24 33.3% 25 28% - - - HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like FASN 2194 genome.wustl.edu 37 17 80047243 80047243 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004104.4 -1 reviewed p.F661 0.826 81 0% 78 17.9% 24 66.6% - - - HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase CSNK1D 1453 genome.wustl.edu 37 17 80206676 80206676 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000269361 -1 known p.L316 0.000 48 0% 65 26.2% 0 - - - - NULL HEXDC 284004 genome.wustl.edu 37 17 80394599 80394599 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173620.2 +1 validated p.D230Y 1.000 135 0.7% 140 17.1% 32 3.1% benign(0.072) tolerated(0.1) neutral(0.291) HMMPfam_Glyco_hydro_20,superfamily_Glyco_hydro_cat FN3KRP 79672 genome.wustl.edu 37 17 80684448 80684448 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024619.3 +1 validated p.R187S 1.000 240 0% 216 10.6% 44 22.7% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) superfamily_Kinase_like ZNF750 79755 genome.wustl.edu 37 17 80788617 80788617 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024702.2 -1 reviewed p.A525T 0.000 46 0% 57 21.1% 1 0% possibly_damaging(0.887) tolerated(0.16) neutral(0.406) NULL ZNF750 79755 genome.wustl.edu 37 17 80789168 80789168 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024702.2 -1 reviewed p.S388F 0.449 155 0% 163 20.9% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL ZNF750 79755 genome.wustl.edu 37 17 80789956 80789956 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024702.2 -1 reviewed p.C125 0.001 76 0% 82 20.7% 0 - - - - NULL TBCD 6904 genome.wustl.edu 37 17 80878488 80878488 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005993.4 +1 reviewed p.V699I 0.000 439 0% 589 22.2% 61 32.7% benign(0.002) tolerated(0.44) neutral(0.013) superfamily_ARM repeat COLEC12 81035 genome.wustl.edu 37 18 346919 346919 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130386.2 -1 validated p.Q235* 1.000 243 0% 139 21.6% 5 0% - - - NULL CLUL1 27098 genome.wustl.edu 37 18 633431 633431 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014410.4 +1 validated p.S330 0.280 210 0% 107 16.8% 1 0% - - - HMMPfam_Clusterin,HMMSmart_CLa ENOSF1 55556 genome.wustl.edu 37 18 685921 685921 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_202758.2 -1 validated p.L268 1.000 380 0% 227 23.3% 21 4.7% - - - HMMPfam_MR_MLE,PatternScan_MR_MLE_2,superfamily_SSF51604 METTL4 64863 genome.wustl.edu 37 18 2544266 2544266 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022840.3 -1 validated p.L401F 0.235 184 0% 136 19.9% 2 100% benign(0.123) tolerated(0.33) neutral(0.034) HMMPfam_MT-A70 METTL4 64863 genome.wustl.edu 37 18 2544708 2544708 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022840.3 -1 validated p.K375N 0.996 464 0% 384 10.2% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_MT-A70 NDC80 10403 genome.wustl.edu 37 18 2587897 2587897 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006101.2 +1 validated p.M246I 0.920 364 0% 162 21% 18 44.4% benign(0) tolerated(0.48) neutral(0.011) NULL SMCHD1 23347 genome.wustl.edu 37 18 2674094 2674094 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015295.2 +1 validated p.N196K 1.000 367 0% 268 26.1% 5 20% probably_damaging(0.998) tolerated(0.16) deleterious(0.534) HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SMCHD1 23347 genome.wustl.edu 37 18 2796483 2796483 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015295.2 +1 validated p.P1986H 1.000 193 0% 105 29.5% 29 34.4% benign(0.293) deleterious(0.01) deleterious(0.496) NULL EMILIN2 84034 genome.wustl.edu 37 18 2891091 2891091 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032048.2 +1 validated p.I322 0.000 104 0% 91 25.3% 5 0% - - - NULL EMILIN2 84034 genome.wustl.edu 37 18 2891275 2891275 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032048.2 +1 validated p.R384* 0.228 96 0% 79 27.8% 3 0% - - - NULL EMILIN2 84034 genome.wustl.edu 37 18 2891432 2891432 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032048.2 +1 validated p.R436H 0.007 177 0% 117 29.9% 4 0% possibly_damaging(0.648) tolerated(0.39) neutral(0.243) NULL MYOM1 8736 genome.wustl.edu 37 18 3116479 3116479 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003803.3 -1 reviewed p.R1051 1.000 80 0% 43 18.6% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MYOM1 8736 genome.wustl.edu 37 18 3134677 3134677 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003803.3 -1 reviewed p.P785 0.901 172 0% 77 27.3% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MYOM1 8736 genome.wustl.edu 37 18 3215217 3215217 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003803.3 -1 reviewed p.S2Y 1.000 141 0% 139 20.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL DLGAP1 9229 genome.wustl.edu 37 18 3567517 3567517 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004746.2 -1 provisional p.S676 0.988 635 0% 340 19.4% 6 50% - - - HMMPfam_GKAP ZFP161 7541 genome.wustl.edu 37 18 5291337 5291337 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143823.1 -1 validated p.G290 0.977 331 0.6% 302 11.9% 7 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 EPB41L3 23136 genome.wustl.edu 37 18 5395147 5395147 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012307.2 -1 provisional e20-1 1.000 260 0% 165 23% 0 - - - - - EPB41L3 23136 genome.wustl.edu 37 18 5395676 5395676 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012307.2 -1 provisional p.V1002M 0.990 387 0% 215 17.2% 12 0% possibly_damaging(0.912) tolerated(0.06) deleterious(0.686) HMMPfam_4_1_CTD EPB41L3 23136 genome.wustl.edu 37 18 5434052 5434052 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012307.2 -1 provisional p.L225P 0.993 268 0% 144 18.8% 3 0% probably_damaging(0.995) tolerated(0.2) deleterious(0.507) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 L3MBTL4 91133 genome.wustl.edu 37 18 6311575 6311575 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173464.3 -1 validated p.R17H 0.002 228 0% 85 16.5% 3 33.3% benign(0.001) tolerated(0.1) neutral(0.286) NULL LAMA1 284217 genome.wustl.edu 37 18 6992637 6992637 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005559.2 -1 validated p.Q1697H 0.035 413 0% 255 22.4% 0 - possibly_damaging(0.654) deleterious(0.04) deleterious(0.579) superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I LAMA1 284217 genome.wustl.edu 37 18 6999986 6999986 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005559.2 -1 validated p.T1465P 1.000 155 0% 115 25.2% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin LAMA1 284217 genome.wustl.edu 37 18 7002317 7002317 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005559.2 -1 validated p.T1443I 0.002 210 0% 130 24.6% 0 - benign(0.001) tolerated(0.21) neutral(0.044) HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin LAMA1 284217 genome.wustl.edu 37 18 7010203 7010203 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005559.2 -1 validated p.R1290K 0.955 350 0% 230 20.4% 0 - benign(0) tolerated(1) - HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281 LAMA1 284217 genome.wustl.edu 37 18 7013996 7013996 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005559.2 -1 validated p.G1061S 1.000 55 0% 43 32.6% 0 - probably_damaging(0.998) tolerated(0.05) deleterious(0.820) HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin LAMA1 284217 genome.wustl.edu 37 18 7035994 7035994 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005559.2 -1 validated p.I611V 1.000 231 0% 147 14.3% 0 - possibly_damaging(0.793) tolerated(0.09) deleterious(0.595) HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281 RAB12 201475 genome.wustl.edu 37 18 8638254 8638254 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001025300.2 +1 validated p.C243* 1.000 325 0% 146 23.3% 40 42.5% - - - superfamily_SSF52540 SOGA2 23255 genome.wustl.edu 37 18 8796350 8796350 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015210.3 +1 predicted p.L711I 1.000 235 0% 185 22.2% 3 100% possibly_damaging(0.526) tolerated(0.33) neutral(0.201) NULL SOGA2 23255 genome.wustl.edu 37 18 8819124 8819124 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015210.3 +1 predicted p.L1008P 0.299 40 0% 37 13.5% 3 33.3% probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL NDUFV2 4729 genome.wustl.edu 37 18 9126840 9126840 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021074.4 +1 reviewed p.T197 0.985 166 0% 242 15.7% 462 28.7% - - - HMMPfam_Complex1_24kDa,superfamily_Thiordxn-like_fd ANKRD12 23253 genome.wustl.edu 37 18 9256405 9256405 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015208.3 +1 validated p.S1047F 1.000 126 0% 66 21.2% 0 - benign(0.313) deleterious(0.04) neutral(0.447) superfamily_Ankyrin repeat ANKRD12 23253 genome.wustl.edu 37 18 9257455 9257455 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015208.3 +1 validated p.T1397I 0.002 146 0% 67 20.9% 1 100% benign(0.198) tolerated(0.08) neutral(0.319) superfamily_Ankyrin repeat ANKRD12 23253 genome.wustl.edu 37 18 9281086 9281086 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015208.3 +1 validated p.V2051I 1.000 218 0% 142 25.4% 11 54.5% probably_damaging(0.998) tolerated(0.06) deleterious(0.797) superfamily_Ankyrin repeat TWSG1 57045 genome.wustl.edu 37 18 9359985 9359985 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020648.5 +1 validated p.R47W 1.000 310 0% 156 21.8% 32 12.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PPP4R1 9989 genome.wustl.edu 37 18 9563389 9563389 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042388.1 -1 validated p.S578N 1.000 382 0% 153 22.2% 21 42.8% benign(0) tolerated(0.33) neutral(0.024) superfamily_ARM repeat NAPG 8774 genome.wustl.edu 37 18 10548298 10548298 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003826.2 +1 reviewed p.K196N 1.000 335 0% 133 24.8% 7 42.8% possibly_damaging(0.668) deleterious(0.02) deleterious(0.619) superfamily_TPR-like PIEZO2 63895 genome.wustl.edu 37 18 10677848 10677848 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000503781 -1 known p.S440 0.959 290 0% 131 18.3% 1 0% - - - NULL ENSG00000175388 0 genome.wustl.edu 37 18 10758117 10758117 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000383408 -1 known p.L521P 1.000 242 0% 108 10.2% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ENSG00000168738 0 genome.wustl.edu 37 18 10857086 10857086 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000302079 -1 known p.S78P 0.960 356 0% 151 17.9% 0 - possibly_damaging(0.496) tolerated(0.25) neutral(0.203) NULL SLC35G4 646000 genome.wustl.edu 37 18 11610123 11610123 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_928960.2 +1 model p.L177I 0.861 145 0% 196 22.4% 0 - possibly_damaging(0.942) tolerated(0.83) neutral(0.388) NULL LOC729602 729602 genome.wustl.edu 37 18 11621122 11621122 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344140.1 -1 model p.V206I 0.057 202 0% 126 19% 0 - - - - HMMPfam_NPIP MPPE1 65258 genome.wustl.edu 37 18 11884569 11884569 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023075.4 -1 validated p.V356M 0.002 173 0% 137 10.2% 107 19.6% benign(0.046) tolerated(0.06) neutral(0.325) superfamily_Metallo-dependent phosphatases MPPE1 65258 genome.wustl.edu 37 18 11886524 11886524 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023075.4 -1 validated p.V281M 0.994 103 0% 128 24.2% 65 30.7% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases ENSG00000231452 0 genome.wustl.edu 37 18 12068111 12068111 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000455542 -1 known p.L50 1.000 21 0% 57 24.6% 0 - - - - NULL LOC100289263 100289263 genome.wustl.edu 37 18 12325292 12325292 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344141.1 -1 model p.A140T 1.000 164 0% 185 22.2% 83 28.9% - - - NULL AFG3L2 10939 genome.wustl.edu 37 18 12337392 12337392 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006796.1 -1 reviewed p.A708V 1.000 426 0% 320 21.2% 56 39.2% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Peptidase_M41 CEP76 79959 genome.wustl.edu 37 18 12678404 12678404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024899.2 -1 provisional p.V443I 0.726 258 0% 133 30.1% 3 33.3% benign(0.002) tolerated(0.4) neutral(0.016) NULL CEP76 79959 genome.wustl.edu 37 18 12697313 12697313 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024899.2 -1 provisional p.T205 0.705 320 0% 289 18.3% 12 41.6% - - - NULL CEP76 79959 genome.wustl.edu 37 18 12699093 12699093 + Silent SNP C C T rs144883006 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024899.2 -1 provisional p.T135 0.888 279 0% 251 23.5% 5 100% - - - NULL PSMG2 56984 genome.wustl.edu 37 18 12724607 12724607 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020232.3 +1 provisional p.L231I 0.454 169 0% 102 27.5% 194 36.5% benign(0) tolerated(0.91) - HMMPfam_HCCA3 CEP192 55125 genome.wustl.edu 37 18 13114146 13114146 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032142.3 +1 validated p.N1799K 0.001 223 0% 172 13.4% 19 26.3% benign(0.023) tolerated(0.56) neutral(0.007) NULL CEP192 55125 genome.wustl.edu 37 18 13116476 13116476 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032142.3 +1 validated p.R1868* 0.991 174 0% 134 20.1% 23 26% - - - NULL CEP192 55125 genome.wustl.edu 37 18 13124693 13124693 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032142.3 +1 validated p.A1917V 0.962 233 0% 268 14.2% 17 23.5% possibly_damaging(0.926) deleterious(0.05) deleterious(0.720) NULL C18orf1 753 genome.wustl.edu 37 18 13621165 13621165 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181481.3 +1 validated p.V77 1.000 123 0% 124 27.4% 6 0% - - - NULL MC5R 4161 genome.wustl.edu 37 18 13826657 13826657 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005913.1 +1 provisional p.R298H 1.000 272 0% 266 25.2% 0 - possibly_damaging(0.857) deleterious(0.01) deleterious(0.737) superfamily_Family A G protein-coupled receptor-like MC2R 4158 genome.wustl.edu 37 18 13885115 13885115 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000529.2 -1 reviewed p.A135T 0.997 120 0% 71 25.4% 0 - possibly_damaging(0.911) deleterious(0) deleterious(0.807) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LOC646359 646359 genome.wustl.edu 37 18 14378210 14378210 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_929288.3 -1 model p.R185G 0.450 86 0% 95 25.3% 0 - - - - HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain ANKRD30B 374860 genome.wustl.edu 37 18 14850368 14850368 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145029.1 +1 validated p.S1065I 0.003 136 0% 126 24.6% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL ANKRD30B 374860 genome.wustl.edu 37 18 14852019 14852019 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145029.1 +1 validated p.S1240F 0.987 255 0% 149 16.1% 0 - benign(0.023) tolerated(0.24) neutral(0.038) NULL ROCK1 6093 genome.wustl.edu 37 18 18572881 18572881 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005406.2 -1 reviewed p.Q635* 1.000 440 0% 142 21.8% 12 8.3% - - - NULL ROCK1 6093 genome.wustl.edu 37 18 18619434 18619434 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005406.2 -1 reviewed p.D350 1.000 292 0% 230 16.1% 8 0% - - - HMMSmart_S_TK_X,superfamily_Kinase_like GREB1L 80000 genome.wustl.edu 37 18 18983947 18983947 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142966.1 +1 provisional p.T275I 1.000 562 0% 308 20.8% 0 - unknown(0) tolerated(0.13) - NULL ESCO1 114799 genome.wustl.edu 37 18 19140865 19140865 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052911.2 -1 validated p.Q636H 0.996 384 0% 192 22.4% 14 50% possibly_damaging(0.714) tolerated(0.07) deleterious(0.577) NULL MIB1 57534 genome.wustl.edu 37 18 19429183 19429183 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020774.2 +1 validated p.S807Y 1.000 237 0% 152 17.1% 2 50% benign(0.261) deleterious(0.03) neutral(0.392) superfamily_SSF57850 GATA6 2627 genome.wustl.edu 37 18 19762801 19762801 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005257.3 +1 validated p.C504* 1.000 298 0% 282 20.6% 6 16.6% - - - NULL TMEM241 85019 genome.wustl.edu 37 18 20965024 20965024 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032933.4 -1 validated p.P96L 1.000 323 0% 141 15.6% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Multidrug resistance efflux transporter EmrE RIOK3 8780 genome.wustl.edu 37 18 21044219 21044219 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003831.3 +1 reviewed p.S125 0.918 390 0% 255 23.9% 10 30% - - - NULL RIOK3 8780 genome.wustl.edu 37 18 21053482 21053482 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003831.3 +1 reviewed p.R302H 1.000 268 0% 111 19.8% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1 RIOK3 8780 genome.wustl.edu 37 18 21057003 21057003 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003831.3 +1 reviewed p.V403I 0.990 404 0% 206 26.2% 12 33.3% benign(0.017) tolerated(0.16) neutral(0.060) HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1,PatternScan_RIO1 NPC1 4864 genome.wustl.edu 37 18 21140370 21140370 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000271.4 -1 reviewed p.A236S 0.912 89 0% 43 32.6% 9 66.6% benign(0) tolerated(0.49) neutral(0.011) NULL LAMA3 3909 genome.wustl.edu 37 18 21523913 21523913 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198129.1 +1 reviewed p.C3063Y 0.964 268 0% 126 23% 45 44.4% benign(0) tolerated(0.96) - HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 LAMA3 3909 genome.wustl.edu 37 18 21532976 21532976 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198129.1 +1 reviewed p.L3253 0.999 271 0% 130 17.7% 187 41.1% - - - HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 CABYR 26256 genome.wustl.edu 37 18 21736378 21736378 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012189.2 +1 reviewed p.G305* 1.000 198 0% 154 21.4% 1 0% - - - NULL IMPACT 55364 genome.wustl.edu 37 18 22028090 22028090 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018439.3 +1 validated p.Q234 1.000 415 0% 231 17.7% 7 28.5% - - - HMMPfam_UPF0029,superfamily_Ribosomal protein S5 domain 2-like PSMA8 143471 genome.wustl.edu 37 18 23713974 23713974 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144662.2 +1 validated p.D15 0.797 131 0% 133 23.3% 0 - - - - HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) KCTD1 284252 genome.wustl.edu 37 18 24126750 24126750 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142730.1 -1 validated p.G584E 1.000 146 0% 146 14.4% 33 33.3% benign(0.051) deleterious(0) neutral(0.448) NULL KCTD1 284252 genome.wustl.edu 37 18 24126863 24126863 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142730.1 -1 validated p.I546 0.990 55 0% 78 29.5% 20 30% - - - NULL CHST9 83539 genome.wustl.edu 37 18 24496690 24496690 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031422.4 -1 validated p.A289T 1.000 234 0% 93 18.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfotransfer_2 DSC3 1825 genome.wustl.edu 37 18 28584188 28584188 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001941.3 -1 reviewed p.R678H 0.000 280 0% 113 21.2% 0 - benign(0.017) tolerated(0.2) neutral(0.050) superfamily_Cadherin-like DSC3 1825 genome.wustl.edu 37 18 28586952 28586952 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001941.3 -1 reviewed p.V603 0.000 327 0% 111 25.2% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DSC3 1825 genome.wustl.edu 37 18 28604394 28604394 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001941.3 -1 reviewed p.R232S 0.995 241 0% 121 20.7% 0 - possibly_damaging(0.505) deleterious(0.04) deleterious(0.518) HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like DSC2 1824 genome.wustl.edu 37 18 28648064 28648064 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024422.3 -1 reviewed p.R875* 0.200 180 0% 73 20.5% 1 100% - - - NULL DSC2 1824 genome.wustl.edu 37 18 28660282 28660282 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024422.3 -1 reviewed p.Q434* 0.981 553 0% 198 23.2% 2 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DSC1 1823 genome.wustl.edu 37 18 28711606 28711606 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024421.2 -1 reviewed p.R813K 1.000 250 0% 92 16.3% 0 - benign(0.308) tolerated(0.18) neutral(0.152) NULL DSC1 1823 genome.wustl.edu 37 18 28720266 28720266 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024421.2 -1 reviewed e10-2 1.000 121 0% 93 19.4% 0 - - - - - DSG1 1828 genome.wustl.edu 37 18 28908287 28908287 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001942.2 +1 reviewed p.E118* 1.000 237 0% 99 20.2% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DSG4 147409 genome.wustl.edu 37 18 28991146 28991146 + Missense_Mutation SNP C C T rs188617814 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134453.1 +1 reviewed p.A716V 0.000 193 0% 159 24.5% 0 - benign(0.036) tolerated(0.2) neutral(0.051) NULL DSG4 147409 genome.wustl.edu 37 18 28993052 28993052 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134453.1 +1 reviewed p.P892S 0.910 321 0% 272 19.5% 0 - benign(0.005) tolerated(0.31) neutral(0.027) NULL DSG4 147409 genome.wustl.edu 37 18 28993460 28993460 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134453.1 +1 reviewed p.P1028T 0.982 127 0% 113 18.6% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL DSG3 1830 genome.wustl.edu 37 18 29044104 29044104 + Nonsense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001944.2 +1 reviewed p.K344* 0.076 187 0% 109 26.6% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DSG3 1830 genome.wustl.edu 37 18 29054188 29054188 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001944.2 +1 reviewed p.G736C 0.811 172 0% 139 15.1% 0 - probably_damaging(0.998) tolerated(0.14) deleterious(0.724) NULL DSG2 1829 genome.wustl.edu 37 18 29102122 29102122 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001943.3 +1 reviewed p.I200 0.001 268 0% 110 21.8% 7 42.8% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin RNF138 51444 genome.wustl.edu 37 18 29704758 29704758 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016271.3 +1 reviewed p.R171C 1.000 564 0% 341 16.7% 17 47% probably_damaging(0.995) tolerated(0.05) deleterious(0.803) HMMSmart_SM00184 KLHL14 57565 genome.wustl.edu 37 18 30257159 30257159 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020805.1 -1 provisional p.V575M 1.000 159 0% 60 25% 16 50% probably_damaging(0.979) deleterious(0) deleterious(0.867) HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central ASXL3 80816 genome.wustl.edu 37 18 31323013 31323013 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030632.1 +1 provisional p.Q1067 1.000 54 0% 49 14.3% 0 - - - - NULL ASXL3 80816 genome.wustl.edu 37 18 31323378 31323378 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030632.1 +1 provisional p.S1189I 0.007 129 0% 130 22.3% 0 - benign(0.039) deleterious(0) neutral(0.447) NULL ASXL3 80816 genome.wustl.edu 37 18 31323801 31323801 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030632.1 +1 provisional p.A1330D 0.997 103 0% 74 28.4% 0 - possibly_damaging(0.774) deleterious(0) deleterious(0.733) NULL NOL4 8715 genome.wustl.edu 37 18 31538313 31538313 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003787.3 -1 validated p.L376I 1.000 421 0.2% 150 29.3% 0 - probably_damaging(0.987) deleterious(0.01) deleterious(0.842) NULL DTNA 1837 genome.wustl.edu 37 18 32431845 32431845 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001390.4 +1 reviewed p.A468 0.993 184 0% 87 14.9% 0 - - - - NULL ZNF397 84307 genome.wustl.edu 37 18 32822746 32822746 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135178.2 +1 reviewed p.E104D 1.000 182 0% 152 13.2% 6 50% possibly_damaging(0.791) deleterious(0.02) deleterious(0.679) HMMPfam_SCAN,HMMSmart_SM00431 ZNF397 84307 genome.wustl.edu 37 18 32825334 32825334 + Nonsense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135178.2 +1 reviewed p.L222* 0.096 309 0% 248 27% 4 50% - - - NULL ZNF396 252884 genome.wustl.edu 37 18 32949590 32949590 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145756.2 -1 validated p.A199 0.064 309 0% 297 20.5% 4 50% - - - NULL ZNF396 252884 genome.wustl.edu 37 18 32949625 32949625 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145756.2 -1 validated e3-1 0.950 237 0.4% 216 18.1% 0 - - - - - GALNT1 2589 genome.wustl.edu 37 18 33263508 33263508 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020474.3 +1 reviewed p.C212Y 1.000 325 0% 75 25.3% 29 58.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases SLC39A6 25800 genome.wustl.edu 37 18 33694322 33694322 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012319.3 -1 validated p.V527 1.000 595 0% 300 12% 24 12.5% - - - HMMPfam_Zip SLC39A6 25800 genome.wustl.edu 37 18 33706420 33706420 + Missense_Mutation SNP G G A rs182934166 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012319.3 -1 validated p.A184V 0.577 402 0% 362 23.8% 13 46.1% benign(0) tolerated(0.48) neutral(0.011) NULL SLC39A6 25800 genome.wustl.edu 37 18 33706643 33706643 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012319.3 -1 validated p.R110C 0.866 1055 0.1% 854 24.5% 15 46.6% benign(0.235) tolerated(0.06) neutral(0.346) NULL MOCOS 55034 genome.wustl.edu 37 18 33795778 33795778 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017947.2 +1 validated p.S545 0.000 73 0% 37 21.6% 5 60% - - - NULL FHOD3 80206 genome.wustl.edu 37 18 34298401 34298401 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025135.2 +1 validated p.P872H 1.000 133 0% 99 23.2% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_FH2_actin_bd SETBP1 26040 genome.wustl.edu 37 18 42618461 42618461 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015559.2 +1 validated p.P1338S 1.000 367 0% 163 16% 2 0% benign(0.011) tolerated(0.99) neutral(0.001) NULL SLC14A2 8170 genome.wustl.edu 37 18 43219801 43219801 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007163.3 +1 validated p.S312P 1.000 179 0% 66 18.2% 0 - possibly_damaging(0.528) deleterious(0.03) deleterious(0.542) HMMPfam_UT SLC14A2 8170 genome.wustl.edu 37 18 43243845 43243845 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007163.3 +1 validated p.W483R 1.000 131 0% 39 12.8% 0 - benign(0.079) deleterious(0) neutral(0.450) NULL SLC14A2 8170 genome.wustl.edu 37 18 43249348 43249348 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007163.3 +1 validated p.T705N 0.916 264 0% 125 22.4% 0 - benign(0.162) deleterious(0.01) neutral(0.420) HMMPfam_UT SLC14A1 6563 genome.wustl.edu 37 18 43307277 43307277 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128588.3 +1 reviewed p.R14H 0.000 88 0% 51 23.5% 0 - benign(0.001) tolerated(0.58) neutral(0.005) NULL EPG5 57724 genome.wustl.edu 37 18 43432479 43432479 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020964.2 -1 validated p.V2565I 0.038 410 0.7% 214 23.8% 6 33.3% benign(0.021) tolerated(0.32) neutral(0.025) NULL EPG5 57724 genome.wustl.edu 37 18 43437952 43437952 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020964.2 -1 validated p.D2436 0.618 127 0% 62 24.2% 12 58.3% - - - NULL PSTPIP2 9050 genome.wustl.edu 37 18 43591155 43591155 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024430.3 -1 validated p.R116* 0.993 688 0.1% 357 23% 4 0% - - - NULL ATP5A1 498 genome.wustl.edu 37 18 43667197 43667197 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001937.1 -1 reviewed p.A318D 1.000 82 0% 58 19% 887 40.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases HAUS1 115106 genome.wustl.edu 37 18 43699990 43699990 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138443.3 +1 validated p.L147S 1.000 226 0% 147 29.3% 59 44% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL LOXHD1 125336 genome.wustl.edu 37 18 44065065 44065065 + Silent SNP G G A rs146200756 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145472.2 -1 reviewed p.N922 0.994 323 0% 163 18.4% 0 - - - - HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain) LOXHD1 125336 genome.wustl.edu 37 18 44104508 44104508 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144612.6 -1 reviewed p.I1321 0.728 110 0% 60 20% 0 - - - - NULL LOXHD1 125336 genome.wustl.edu 37 18 44113259 44113259 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144612.6 -1 reviewed p.D1136G 1.000 211 0% 111 14.4% 0 - probably_damaging(0.977) tolerated(0.34) neutral(0.442) HMMPfam_PLAT,superfamily_Lipase_LipOase ST8SIA5 29906 genome.wustl.edu 37 18 44266212 44266212 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013305.4 -1 reviewed p.A165D 1.000 113 0% 104 11.5% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_transf_29 TCEB3B 51224 genome.wustl.edu 37 18 44560002 44560002 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016427.2 -1 reviewed p.S545N 0.000 114 0% 121 16.5% 0 - benign(0.134) tolerated(0.34) neutral(0.035) HMMPfam_Elongin_A TCEB3B 51224 genome.wustl.edu 37 18 44561410 44561410 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016427.2 -1 reviewed p.L76M 0.008 207 0% 299 21.4% 0 - probably_damaging(0.991) deleterious(0.02) deleterious(0.827) HMMSmart_TFS2N,HMMPfam_TFIIS TCEB3B 51224 genome.wustl.edu 37 18 44561534 44561534 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016427.2 -1 reviewed p.L34 0.000 348 0% 404 15.3% 0 - - - - HMMSmart_TFS2N,HMMPfam_TFIIS KATNAL2 83473 genome.wustl.edu 37 18 44579417 44579417 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031303.2 +1 validated p.A25S 1.000 342 0% 187 11.2% 4 0% benign(0) tolerated(0.74) neutral(0.002) NULL ZBTB7C 201501 genome.wustl.edu 37 18 45556117 45556117 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039360.1 -1 validated p.T458 1.000 47 0% 52 23.1% 1 0% - - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZBTB7C 201501 genome.wustl.edu 37 18 45566596 45566596 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039360.1 -1 validated p.E295K 1.000 41 0% 35 25.7% 1 0% benign(0) tolerated(0.19) neutral(0.050) NULL ZBTB7C 201501 genome.wustl.edu 37 18 45566677 45566677 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039360.1 -1 validated p.A268T 0.758 46 0% 33 27.3% 0 - benign(0) tolerated(0.13) neutral(0.253) NULL ZBTB7C 201501 genome.wustl.edu 37 18 45567151 45567151 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039360.1 -1 validated p.A110T 1.000 410 0.2% 227 26% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB DYM 54808 genome.wustl.edu 37 18 46645178 46645178 + Missense_Mutation SNP C C T rs190980988 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017653.3 -1 reviewed p.R561H 1.000 554 0% 232 23.7% 45 48.8% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Dymeclin DYM 54808 genome.wustl.edu 37 18 46645263 46645263 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017653.3 -1 reviewed p.R533 1.000 490 0.2% 218 23.9% 39 33.3% - - - HMMPfam_Dymeclin RPL17 6139 genome.wustl.edu 37 18 47015920 47015920 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000985.3 -1 reviewed p.G106S 1.000 93 0% 129 20.2% 1076 32.3% benign(0.326) deleterious(0.01) deleterious(0.508) HMMPfam_Ribosomal_L22,superfamily_Ribosomal protein L22 LIPG 9388 genome.wustl.edu 37 18 47088691 47088691 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006033.2 +1 reviewed p.V5I 0.000 86 0% 68 25% 0 - benign(0.003) tolerated(0.14) neutral(0.249) NULL MYO5B 4645 genome.wustl.edu 37 18 47566570 47566570 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080467.2 -1 reviewed p.V85I 0.998 365 0% 140 22.1% 10 50% possibly_damaging(0.584) deleterious(0.03) deleterious(0.566) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases CXXC1 30827 genome.wustl.edu 37 18 47809912 47809912 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101654.1 -1 validated p.G520V 1.000 178 0% 198 24.7% 72 43% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MRO 83876 genome.wustl.edu 37 18 48331544 48331544 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127176.1 -1 reviewed p.T151P 1.000 239 0% 142 19.7% 0 - probably_damaging(0.981) deleterious(0.03) deleterious(0.790) superfamily_ARM repeat ME2 4200 genome.wustl.edu 37 18 48446923 48446923 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002396.4 +1 reviewed p.D278N 1.000 188 0% 77 22.1% 28 35.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_malic,PatternScan_MALIC_ENZYMES,superfamily_SSF53223 DCC 1630 genome.wustl.edu 37 18 50432632 50432632 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005215.3 +1 reviewed p.R211* 0.970 199 0% 62 16.1% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin DCC 1630 genome.wustl.edu 37 18 51013239 51013239 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005215.3 +1 reviewed p.C1270Y 1.000 201 0% 58 10.3% 0 - probably_damaging(0.991) deleterious(0.04) deleterious(0.793) HMMPfam_Neogenin_C STARD6 147323 genome.wustl.edu 37 18 51863550 51863550 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139171.1 -1 provisional p.R71I 0.894 520 0% 597 22.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_START,HMMSmart_START,superfamily_SSF55961 RAB27B 5874 genome.wustl.edu 37 18 52546599 52546599 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004163.3 +1 provisional e2-1 1.000 310 0% 114 15.8% 0 - - - - - TCF4 6925 genome.wustl.edu 37 18 52896231 52896231 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083962.1 -1 reviewed p.R576* 1.000 193 0% 83 16.9% 5 0% - - - HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic TCF4 6925 genome.wustl.edu 37 18 52899894 52899894 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083962.1 -1 reviewed p.P499S 0.899 194 0% 61 26.2% 2 0% benign(0) tolerated(0.29) neutral(0.029) NULL WDR7 23335 genome.wustl.edu 37 18 54354144 54354144 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015285.2 +1 reviewed p.S219I 1.000 348 0% 153 15% 2 0% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMSmart_SM00320,superfamily_Prolyl oligopeptidase N-terminal domain WDR7 23335 genome.wustl.edu 37 18 54423918 54423918 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015285.2 +1 reviewed p.L698 1.000 143 0% 88 26.1% 2 0% - - - NULL ONECUT2 9480 genome.wustl.edu 37 18 55103907 55103907 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004852.2 +1 reviewed p.S320L 1.000 16 0% 16 31.2% 1 0% possibly_damaging(0.824) tolerated(0.17) neutral(0.371) NULL NARS 4677 genome.wustl.edu 37 18 55274370 55274370 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004539.3 -1 validated p.A333T 1.000 143 0% 91 26.4% 127 22.8% benign(0.047) tolerated(0.07) neutral(0.322) HMMPfam_tRNA-synt_2,superfamily_SSF55681 NARS 4677 genome.wustl.edu 37 18 55274851 55274851 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004539.3 -1 validated p.G209E 1.000 228 0% 126 19.8% 109 16.5% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Nucleic_acid_OB ATP8B1 5205 genome.wustl.edu 37 18 55335700 55335700 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005603.4 -1 reviewed p.A724T 1.000 349 0% 184 27.2% 8 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF56784,superfamily_SSF81665 NEDD4L 23327 genome.wustl.edu 37 18 56002768 56002768 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144967.1 +1 validated p.T375M 1.000 204 0% 102 28.4% 7 28.5% possibly_damaging(0.742) tolerated(0.08) deleterious(0.572) NULL NEDD4L 23327 genome.wustl.edu 37 18 56057906 56057906 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144967.1 +1 validated p.R895H 1.000 252 0% 199 24.6% 43 53.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain ALPK2 115701 genome.wustl.edu 37 18 56202886 56202886 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052947.3 -1 validated p.G1511 0.018 429 0% 111 21.6% 0 - - - - NULL ALPK2 115701 genome.wustl.edu 37 18 56246090 56246090 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052947.3 -1 validated p.L640I 0.000 424 0% 409 26.7% 0 - benign(0.407) deleterious(0) deleterious(0.576) NULL ALPK2 115701 genome.wustl.edu 37 18 56246303 56246303 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052947.3 -1 validated p.E569* 0.025 347 0.3% 277 28.9% 1 0% - - - NULL ZNF532 55205 genome.wustl.edu 37 18 56585551 56585551 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018181.4 +1 validated p.F11S 1.000 96 0% 45 22.2% 11 27.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF532 55205 genome.wustl.edu 37 18 56615353 56615353 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018181.4 +1 validated p.L920 1.000 278 0% 130 23.8% 15 26.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 RAX 30062 genome.wustl.edu 37 18 56939638 56939638 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013435.2 -1 reviewed p.R166 1.000 120 0% 122 27% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like KIAA1468 57614 genome.wustl.edu 37 18 59912063 59912063 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020854.3 +1 validated p.L563I 1.000 465 0.2% 126 19% 11 45.4% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_ARM repeat ZCCHC2 54877 genome.wustl.edu 37 18 60237435 60237435 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017742.4 +1 validated p.S649I 1.000 199 0% 143 16.8% 6 66.6% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL ZCCHC2 54877 genome.wustl.edu 37 18 60241779 60241779 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017742.4 +1 validated p.G822E 0.995 452 0% 208 23.1% 5 40% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PHLPP1 23239 genome.wustl.edu 37 18 60645768 60645768 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194449.2 +1 validated p.V908M 1.000 24 0% 16 25% 13 15.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain VPS4B 9525 genome.wustl.edu 37 18 61067284 61067284 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004869.3 -1 reviewed p.Q263* 1.000 109 0% 96 24% 8 0% - - - HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases SERPINB12 89777 genome.wustl.edu 37 18 61232755 61232755 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080474.1 +1 provisional p.Q241H 1.000 237 0% 65 15.4% 0 - probably_damaging(0.991) deleterious(0.03) deleterious(0.808) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINB3 6317 genome.wustl.edu 37 18 61323181 61323181 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006919.2 -1 validated p.L295I 0.293 340 0% 86 23.3% 0 - possibly_damaging(0.946) deleterious(0) deleterious(0.835) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins SERPINB3 6317 genome.wustl.edu 37 18 61324108 61324108 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006919.2 -1 validated p.S242N 1.000 667 0% 69 18.8% 0 - probably_damaging(0.998) tolerated(0.16) deleterious(0.534) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins SERPINB11 89778 genome.wustl.edu 37 18 61379859 61379859 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080475.2 +1 validated p.P97S 0.000 258 0% 74 18.9% 0 - benign(0.025) tolerated(0.8) neutral(0.002) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins SERPINB2 5055 genome.wustl.edu 37 18 61558784 61558784 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143818.1 +1 validated p.S36A 0.998 202 0% 67 13.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin SERPINB8 5271 genome.wustl.edu 37 18 61645694 61645694 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002640.3 +1 validated p.A51V 0.664 134 0% 93 24.7% 4 0% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin CDH7 1005 genome.wustl.edu 37 18 63481778 63481778 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004361.2 +1 reviewed p.S188I 1.000 363 0% 205 18.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH7 1005 genome.wustl.edu 37 18 63511187 63511187 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004361.2 +1 reviewed p.P374L 1.000 311 0% 82 23.2% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00112,superfamily_Cadherin-like CDH19 28513 genome.wustl.edu 37 18 64172159 64172159 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021153.2 -1 reviewed p.E737* 0.285 262 0% 68 17.6% 0 - - - - HMMPfam_Cadherin_C CDH19 28513 genome.wustl.edu 37 18 64212025 64212025 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021153.2 -1 reviewed p.E297D 0.999 454 0.2% 387 17.8% 0 - benign(0.014) tolerated(1) neutral(0.001) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin CDH19 28513 genome.wustl.edu 37 18 64235689 64235689 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021153.2 -1 reviewed p.P152S 0.999 364 0.3% 79 22.8% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) superfamily_Cadherin CDH19 28513 genome.wustl.edu 37 18 64235837 64235837 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021153.2 -1 reviewed p.I102M 0.000 342 0% 83 26.5% 0 - benign(0) tolerated(0.2) neutral(0.049) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DSEL 92126 genome.wustl.edu 37 18 65179211 65179211 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032160.2 -1 validated p.L889F 0.958 133 0% 135 23% 0 - benign(0.004) tolerated(0.27) neutral(0.034) superfamily_P-loop containing nucleoside triphosphate hydrolases DSEL 92126 genome.wustl.edu 37 18 65179517 65179517 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032160.2 -1 validated p.G787R 1.000 62 0% 68 20.6% 0 - probably_damaging(0.998) tolerated(0.12) deleterious(0.735) NULL DSEL 92126 genome.wustl.edu 37 18 65179580 65179580 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032160.2 -1 validated p.V766I 0.006 96 0% 94 21.3% 0 - benign(0.002) tolerated(0.47) neutral(0.011) NULL DSEL 92126 genome.wustl.edu 37 18 65180864 65180864 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032160.2 -1 validated p.G338S 1.000 253 0% 293 24.6% 0 - probably_damaging(1) tolerated(0.13) deleterious(0.752) NULL CCDC102B 79839 genome.wustl.edu 37 18 66506078 66506078 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001093729.1 +1 validated p.L248M 0.000 299 0% 102 22.5% 0 - possibly_damaging(0.922) tolerated(0.27) neutral(0.405) NULL RTTN 25914 genome.wustl.edu 37 18 67721390 67721390 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173630.3 -1 validated p.T1721I 0.327 271 0% 122 26.2% 6 33.3% benign(0.01) tolerated(0.63) neutral(0.004) NULL RTTN 25914 genome.wustl.edu 37 18 67776755 67776755 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173630.3 -1 validated p.K1294N 1.000 145 0% 91 23.1% 6 66.6% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL RTTN 25914 genome.wustl.edu 37 18 67795672 67795672 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173630.3 -1 validated p.R1022I 1.000 236 0% 57 22.8% 1 100% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL RTTN 25914 genome.wustl.edu 37 18 67860597 67860597 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173630.3 -1 validated p.R312W 1.000 180 0% 121 22.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat TIMM21 29090 genome.wustl.edu 37 18 71816097 71816097 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014177.2 +1 validated p.S18 0.000 181 0% 226 18.1% 36 33.3% - - - NULL CNDP2 55748 genome.wustl.edu 37 18 72168698 72168698 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018235.2 +1 validated p.G65 0.088 559 0% 495 20% 156 77.5% - - - superfamily_SSF53187 CNDP2 55748 genome.wustl.edu 37 18 72183481 72183481 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018235.2 +1 validated p.R308* 0.996 93 0% 98 18.4% 226 2.2% - - - HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187 CNDP1 84735 genome.wustl.edu 37 18 72244196 72244196 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032649.5 +1 reviewed p.A312T 0.018 446 0% 165 25.5% 0 - benign(0.013) tolerated(0.46) neutral(0.013) HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain,superfamily_Zn-dependent exopeptidases ZNF407 55628 genome.wustl.edu 37 18 72344173 72344173 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017757.2 +1 reviewed p.N400H 0.000 121 0% 128 20.3% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL TSHZ1 10194 genome.wustl.edu 37 18 72998427 72998427 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005786.4 +1 reviewed p.A310 0.129 106 0% 127 20.5% 11 54.5% - - - NULL TSHZ1 10194 genome.wustl.edu 37 18 72999305 72999305 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005786.4 +1 reviewed p.G603D 0.999 153 0% 140 20% 14 50% benign(0.035) tolerated(0.2) neutral(0.051) NULL TSHZ1 10194 genome.wustl.edu 37 18 72999726 72999726 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005786.4 +1 reviewed p.P743 0.004 39 0% 55 16.4% 19 42.1% - - - NULL SALL3 27164 genome.wustl.edu 37 18 76754243 76754243 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_171999.2 +1 validated p.A751D 1.000 104 0% 116 22.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ATP9B 374868 genome.wustl.edu 37 18 77067206 77067206 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198531.3 +1 validated p.R582H 1.000 101 0% 68 20.6% 6 0% benign(0.071) tolerated(0.29) neutral(0.034) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N ATP9B 374868 genome.wustl.edu 37 18 77137355 77137355 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198531.3 +1 validated p.P1139H 0.999 82 0% 71 25.4% 16 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NFATC1 4772 genome.wustl.edu 37 18 77211119 77211119 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172387.1 +1 reviewed p.I572 0.902 33 0% 40 20% 15 0% - - - superfamily_p53-like transcription factors,HMMPfam_RHD PQLC1 80148 genome.wustl.edu 37 18 77694001 77694001 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025078.4 -1 validated p.E120V 0.944 218 0% 177 13.6% 28 0% possibly_damaging(0.538) tolerated(0.24) neutral(0.220) NULL ADNP2 22850 genome.wustl.edu 37 18 77894666 77894666 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014913.3 +1 validated p.A457V 0.001 64 0% 70 21.4% 9 33.3% benign(0) tolerated(0.2) neutral(0.049) NULL ADNP2 22850 genome.wustl.edu 37 18 77896049 77896049 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014913.3 +1 validated p.C918Y 1.000 95 0% 79 16.5% 8 25% probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL PPAP2C 8612 genome.wustl.edu 37 19 287668 287668 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_177543.1 -1 reviewed p.Y117 1.000 77 0% 105 21.9% 108 53.7% - - - superfamily_AcPase_VanPerase MIER2 54531 genome.wustl.edu 37 19 312203 312203 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017550.1 -1 provisional p.K293E 1.000 58 0% 92 30.4% 21 33.3% probably_damaging(1) tolerated(0.12) deleterious(0.760) NULL THEG 51298 genome.wustl.edu 37 19 375883 375883 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016585.3 -1 reviewed p.R30C 0.000 35 0% 54 27.8% 0 - possibly_damaging(0.642) deleterious(0.04) deleterious(0.574) NULL SHC2 25759 genome.wustl.edu 37 19 436216 436216 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012435.2 -1 validated p.R301H 1.000 34 0% 33 18.2% 11 54.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729 HCN2 610 genome.wustl.edu 37 19 603774 603774 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001194.3 +1 validated p.R288H 1.000 255 0% 261 15.3% 1 0% possibly_damaging(0.843) deleterious(0.01) deleterious(0.729) HMMPfam_Ion_trans,superfamily_SSF81324 HCN2 610 genome.wustl.edu 37 19 608110 608110 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001194.3 +1 validated p.Y455 1.000 50 0% 64 17.2% 14 64.2% - - - HMMPfam_Ion_trans,superfamily_SSF81324 POLRMT 5442 genome.wustl.edu 37 19 619612 619612 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005035.3 -1 reviewed p.L1014I 1.000 32 0% 27 25.9% 81 53% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RNA_pol,superfamily_SSF56672 PALM 5064 genome.wustl.edu 37 19 746705 746705 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002579.2 +1 reviewed p.T352M 0.005 17 0% 14 28.6% 23 8.6% probably_damaging(0.958) deleterious(0.01) deleterious(0.807) HMMPfam_Paralemmin C19orf21 126353 genome.wustl.edu 37 19 757669 757669 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173481.2 +1 predicted p.N241 0.000 44 0% 31 16.1% 49 44.8% - - - NULL PTBP1 5725 genome.wustl.edu 37 19 806558 806558 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002819.4 +1 reviewed e10+2 1.000 36 0% 23 17.4% 3 33.3% - - - - LPPR3 79948 genome.wustl.edu 37 19 814929 814929 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024888.1 -1 provisional p.D186Y 1.000 174 0% 199 30.2% 3 66.6% probably_damaging(1) tolerated(0.38) deleterious(0.517) HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase AZU1 566 genome.wustl.edu 37 19 828383 828383 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001700.3 +1 reviewed p.S71N 0.000 18 0% 33 24.2% 0 - benign(0) tolerated(1) - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys ARID3A 1820 genome.wustl.edu 37 19 960103 960103 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005224.2 +1 reviewed p.L235 0.999 437 0% 271 18.1% 2 0% - - - HMMPfam_ARID,superfamily_ARID WDR18 57418 genome.wustl.edu 37 19 990980 990980 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024100.3 +1 reviewed p.V242 0.987 94 0% 81 17.3% 250 23.6% - - - superfamily_WD40_like GRIN3B 116444 genome.wustl.edu 37 19 1005130 1005130 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138690.1 +1 provisional p.F544V 1.000 29 0% 33 18.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PBPe,superfamily_SSF53850 ABCA7 10347 genome.wustl.edu 37 19 1052032 1052032 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019112.3 +1 reviewed p.C1018 1.000 48 0% 40 22.5% 3 33.3% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA7 10347 genome.wustl.edu 37 19 1063780 1063780 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019112.3 +1 reviewed p.D1957Y 1.000 63 0% 61 18% 9 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases HMHA1 23526 genome.wustl.edu 37 19 1078017 1078017 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012292.2 +1 validated p.R449 0.998 97 0% 94 21.3% 33 3% - - - NULL STK11 6794 genome.wustl.edu 37 19 1220490 1220490 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000455.4 +1 reviewed p.L195M 1.000 55 0% 54 16.7% 110 16.3% probably_damaging(0.967) deleterious(0) deleterious(0.853) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase C19orf26 255057 genome.wustl.edu 37 19 1234250 1234250 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152769.2 -1 validated p.G230 0.500 14 0% 16 25% 4 25% - - - NULL CIRBP-AS1 148046 genome.wustl.edu 37 19 1268385 1268385 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436371 -1 known p.L107 0.000 103 0% 103 28.2% 5 60% - - - NULL CIRBP-AS1 148046 genome.wustl.edu 37 19 1269983 1269983 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436371 -1 known p.L53M 0.000 135 0% 183 27.9% 4 50% - - - NULL CIRBP 1153 genome.wustl.edu 37 19 1271392 1271392 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001280.2 +1 validated p.G92E 0.996 103 0% 108 23.1% 70 2.8% unknown(0) deleterious(0) - superfamily_RNA-binding domain RBD MUM1 84939 genome.wustl.edu 37 19 1358632 1358632 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024247.1 +1 validated NULL 0.000 35 0% 39 30.8% 2 0% - - - - MUM1 84939 genome.wustl.edu 37 19 1360993 1360993 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032853.3 +1 validated p.R359K 0.000 36 0% 30 16.7% 5 40% benign(0.016) tolerated(0.97) neutral(0.001) NULL RPS15 6209 genome.wustl.edu 37 19 1440079 1440079 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018.3 +1 reviewed p.R51W 0.559 29 0% 32 18.8% 1438 39.8% benign(0.087) deleterious(0.04) neutral(0.355) HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19 PCSK4 54760 genome.wustl.edu 37 19 1484105 1484105 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017573.3 -1 validated p.G364R 0.004 19 5.3% 30 20% 2 100% benign(0.002) tolerated(0.6) neutral(0.004) HMMPfam_Peptidase_S8,superfamily_Subtilisin-like PCSK4 54760 genome.wustl.edu 37 19 1487789 1487789 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441747 -1 known p.R38K 1.000 69 0% 73 23.3% 1 0% unknown(0) deleterious(0) - superfamily_Pept_S8_S53 TCF3 6929 genome.wustl.edu 37 19 1615392 1615392 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003200.2 -1 validated p.L572M 1.000 84 1.2% 113 26.5% 58 46.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain TCF3 6929 genome.wustl.edu 37 19 1615407 1615407 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003200.2 -1 validated p.E567K 1.000 84 0% 98 24.5% 50 38% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain TCF3 6929 genome.wustl.edu 37 19 1627405 1627405 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003200.2 -1 validated p.A107T 0.002 19 0% 22 22.7% 44 38.6% benign(0) tolerated(0.05) neutral(0.345) NULL ATP8B3 148229 genome.wustl.edu 37 19 1799992 1799992 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138813.2 -1 reviewed p.Q502H 1.000 99 0% 120 24.2% 3 33.3% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) superfamily_SSF56784,superfamily_SSF81660 REXO1 57455 genome.wustl.edu 37 19 1816244 1816244 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020695.3 -1 validated p.R1186I 1.000 70 0% 41 26.8% 89 47.1% possibly_damaging(0.819) deleterious(0.02) deleterious(0.693) HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T REXO1 57455 genome.wustl.edu 37 19 1816518 1816518 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020695.3 -1 validated p.R1123H 1.000 32 0% 25 24% 92 36.9% possibly_damaging(0.883) tolerated(0.14) deleterious(0.595) HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T REXO1 57455 genome.wustl.edu 37 19 1828260 1828260 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020695.3 -1 validated p.P176 0.000 15 0% 10 40% 9 22.2% - - - NULL REXO1 57455 genome.wustl.edu 37 19 1828593 1828593 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020695.3 -1 validated p.K65N 0.993 13 0% 19 21.1% 3 33.3% probably_damaging(0.954) tolerated(0.07) deleterious(0.717) NULL FAM108A1 81926 genome.wustl.edu 37 19 1881304 1881304 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031213.3 -1 validated p.V88I 1.000 41 0% 36 41.7% 72 31.9% possibly_damaging(0.734) deleterious(0.01) deleterious(0.674) PatternScan_TONB_DEPENDENT_REC_1 CSNK1G2 1455 genome.wustl.edu 37 19 1979526 1979526 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001319.6 +1 validated p.R296C 0.999 75 0% 90 33.3% 103 38.8% benign(0.003) deleterious(0.05) neutral(0.345) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) BTBD2 55643 genome.wustl.edu 37 19 1986553 1986553 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017797.3 -1 reviewed p.A504 0.306 134 0.7% 141 22.7% 216 50.9% - - - HMMPfam_PHR MKNK2 2872 genome.wustl.edu 37 19 2037757 2037757 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017572.3 -1 validated p.T409I 0.022 74 0% 86 18.6% 352 42.6% unknown(0) - - NULL MKNK2 2872 genome.wustl.edu 37 19 2041097 2041097 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199054.2 -1 validated p.R351H 0.981 225 0.4% 180 18.9% 245 31% probably_damaging(0.997) tolerated(0.08) deleterious(0.766) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase AP3D1 8943 genome.wustl.edu 37 19 2116650 2116650 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003938.5 -1 validated p.R652H 0.456 37 0% 29 24.1% 76 43.4% benign(0.026) tolerated(0.27) neutral(0.035) HMMPfam_BLVR DOT1L 84444 genome.wustl.edu 37 19 2210735 2210735 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032482.2 +1 validated p.R411H 1.000 57 0% 50 32% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AT_hook,HMMSmart_AT_hook DOT1L 84444 genome.wustl.edu 37 19 2211153 2211153 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440640 +1 known p.G256V 0.768 67 1.5% 54 13% 4 0% - - - NULL DOT1L 84444 genome.wustl.edu 37 19 2220218 2220218 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032482.2 +1 validated p.A935S 0.904 53 0% 87 18.4% 10 50% benign(0) deleterious(0.02) neutral(0.383) NULL DOT1L 84444 genome.wustl.edu 37 19 2223314 2223314 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032482.2 +1 validated p.A1142D 1.000 73 0% 117 34.2% 17 52.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SF3A2 8175 genome.wustl.edu 37 19 2244751 2244751 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007165.4 +1 reviewed p.T73M 0.992 155 0% 123 23.6% 179 43.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00451 ENSG00000005206 0 genome.wustl.edu 37 19 2337441 2337441 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452401 +1 known e3-1 1.000 46 0% 67 29.9% 1 0% - - - - ENSG00000005206 0 genome.wustl.edu 37 19 2353109 2353109 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452401 +1 known p.A560T 0.008 29 0% 62 16.1% 24 33.3% - - - NULL TMPRSS9 360200 genome.wustl.edu 37 19 2410327 2410327 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182973.1 +1 provisional p.G363S 0.970 161 0% 143 18.9% 0 - benign(0.045) tolerated(0.32) neutral(0.026) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases LMNB2 84823 genome.wustl.edu 37 19 2444501 2444501 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032737.2 -1 reviewed p.A81V 0.999 86 0% 108 13% 40 15% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_Filament THOP1 7064 genome.wustl.edu 37 19 2790577 2790577 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003249.3 +1 provisional p.V59M 0.999 43 0% 62 16.1% 34 29.4% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) superfamily_SSF55486 THOP1 7064 genome.wustl.edu 37 19 2796123 2796123 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003249.3 +1 provisional p.Y141 1.000 135 0% 136 21.3% 43 39.5% - - - superfamily_SSF55486 ZNF556 80032 genome.wustl.edu 37 19 2877392 2877392 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024967.1 +1 provisional p.R146W 0.000 236 0% 182 17.6% 0 - probably_damaging(0.989) deleterious(0.01) deleterious(0.845) superfamily_SSF57667 ZNF57 126295 genome.wustl.edu 37 19 2917327 2917327 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173480.2 +1 validated p.F236 0.000 210 0% 173 26.6% 8 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF57 126295 genome.wustl.edu 37 19 2918141 2918141 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173480.2 +1 validated p.Q508* 0.000 235 0% 138 22.5% 7 14.2% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF77 58492 genome.wustl.edu 37 19 2934228 2934228 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021217.2 -1 validated p.K299N 0.003 474 0% 420 23.8% 4 0% benign(0.355) tolerated(0.58) neutral(0.118) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF77 58492 genome.wustl.edu 37 19 2934576 2934576 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021217.2 -1 validated p.T183 0.000 306 0% 243 21.4% 3 66.6% - - - superfamily_SSF57667 TLE6 79816 genome.wustl.edu 37 19 2989213 2989213 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143986.1 +1 validated p.R299W 0.999 34 0% 38 15.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like AES 166 genome.wustl.edu 37 19 3057741 3057741 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198969.1 -1 reviewed e3-1 1.000 193 0% 183 19.1% 2 50% - - - - NCLN 56926 genome.wustl.edu 37 19 3198896 3198896 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020170.3 +1 validated e5+1 0.997 62 0% 77 15.6% 2 100% - - - - CELF5 60680 genome.wustl.edu 37 19 3290328 3290328 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021938.3 +1 reviewed p.S429Y 1.000 166 0% 168 19.6% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD FZR1 51343 genome.wustl.edu 37 19 3533342 3533342 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136198.1 +1 validated p.P431 0.464 63 0% 81 11.1% 64 34.3% - - - superfamily_WD40 repeat-like HMG20B 10362 genome.wustl.edu 37 19 3575588 3575588 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006339.2 +1 validated p.L134 0.815 230 0% 232 12.5% 199 20.6% - - - HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box HMG20B 10362 genome.wustl.edu 37 19 3576607 3576607 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000405446 +1 known p.S23F 1.000 206 0% 216 22.2% 186 37% unknown(0) - - NULL C19orf29 58509 genome.wustl.edu 37 19 3614432 3614432 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080543.1 -1 validated p.L440F 1.000 76 0% 92 31.5% 9 11.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Cactin_mid C19orf29 58509 genome.wustl.edu 37 19 3620798 3620798 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080543.1 -1 validated p.A215 1.000 116 0% 182 25.8% 16 50% - - - NULL PIP5K1C 23396 genome.wustl.edu 37 19 3643342 3643342 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012398.1 -1 reviewed p.F516 1.000 134 0% 102 21.6% 17 29.4% - - - NULL PIP5K1C 23396 genome.wustl.edu 37 19 3656478 3656478 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012398.1 -1 reviewed p.D182 1.000 64 0% 76 15.8% 19 21% - - - HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104 TJP3 27134 genome.wustl.edu 37 19 3743953 3743953 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014428.1 +1 provisional p.P653 0.006 313 0% 340 20% 96 47.9% - - - HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases ZFR2 23217 genome.wustl.edu 37 19 3827585 3827585 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015174.1 -1 validated p.Q307* 0.995 50 0% 43 18.6% 0 - - - - NULL ATCAY 85300 genome.wustl.edu 37 19 3905607 3905607 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033064.4 +1 reviewed p.T104 0.262 248 0% 248 16.5% 0 - - - - NULL DAPK3 1613 genome.wustl.edu 37 19 3964297 3964297 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001348.1 -1 reviewed p.H166 1.000 131 0% 128 29.7% 98 33.6% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase EEF2 1938 genome.wustl.edu 37 19 3979994 3979994 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001961.3 -1 reviewed p.V473M 1.000 63 0% 50 14% 2006 45% possibly_damaging(0.753) deleterious(0) deleterious(0.721) HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins PIAS4 51588 genome.wustl.edu 37 19 4012926 4012926 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015897.2 +1 provisional p.M11I 1.000 90 0% 124 14.5% 15 46.6% probably_damaging(0.975) deleterious(0) deleterious(0.861) NULL MAP2K2 5605 genome.wustl.edu 37 19 4099275 4099275 + Silent SNP C C G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030662.3 -1 reviewed p.R281 1.000 26 0% 21 19% 296 38.8% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase EBI3 10148 genome.wustl.edu 37 19 4236963 4236963 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005755.2 +1 reviewed p.L190I 0.993 77 0% 68 10.3% 5 0% probably_damaging(0.981) tolerated(0.22) neutral(0.467) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like CCDC94 55702 genome.wustl.edu 37 19 4251073 4251073 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018074.4 +1 provisional p.R59W 0.915 254 0% 222 19.4% 19 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF572 SHD 56961 genome.wustl.edu 37 19 4284899 4284899 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020209.3 +1 validated p.Q238H 1.000 45 0% 48 20.8% 0 - probably_damaging(0.988) deleterious(0.02) deleterious(0.821) HMMSmart_SH2,superfamily_SSF55550 TMIGD2 126259 genome.wustl.edu 37 19 4292743 4292743 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144615.2 -1 validated p.P234 0.000 62 0% 46 23.9% 2 0% - - - NULL MPND 84954 genome.wustl.edu 37 19 4357325 4357325 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032868.4 +1 validated p.P358S 1.000 24 0% 32 21.9% 55 38.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Mov34,superfamily_JAB1/MPN domain HDGFRP2 84717 genome.wustl.edu 37 19 4488840 4488840 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001520.1 +1 reviewed p.N152 1.000 65 0% 67 20.9% 110 37.2% - - - NULL PLIN4 729359 genome.wustl.edu 37 19 4511421 4511421 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080400.1 -1 provisional p.L837M 0.000 269 0.4% 267 15.4% 0 - benign(0.01) tolerated(0.26) neutral(0.035) NULL PLIN5 440503 genome.wustl.edu 37 19 4531745 4531745 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013706.2 -1 validated p.H50 1.000 9 0.000 7 0.571 0 - - - - HMMPfam_Perilipin LRG1 116844 genome.wustl.edu 37 19 4538481 4538481 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052972.2 -1 validated p.S172Y 0.919 72 0% 82 14.6% 27 25.9% probably_damaging(0.96) tolerated(0.06) deleterious(0.726) HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058 LRG1 116844 genome.wustl.edu 37 19 4538920 4538920 + Missense_Mutation SNP G G T rs189006181 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052972.2 -1 validated p.L26M 0.544 54 0% 62 9.7% 25 8% probably_damaging(0.962) deleterious(0) deleterious(0.850) superfamily_SSF52058 SEMA6B 10501 genome.wustl.edu 37 19 4555090 4555090 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032108.2 -1 reviewed p.A194T 1.000 144 0% 132 30.3% 8 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain C19orf10 56005 genome.wustl.edu 37 19 4664911 4664911 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019107.3 -1 validated p.Q88H 0.997 83 0% 105 21.9% 240 42.9% benign(0.061) tolerated(0.13) neutral(0.257) HMMPfam_UPF0556 LOC100133070 100133070 genome.wustl.edu 37 19 4793805 4793805 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001719147.1 -1 model e2-1 1.000 38 0% 42 14.3% 30 13.3% possibly_damaging(0.843) deleterious(0) deleterious(0.768) - TICAM1 148022 genome.wustl.edu 37 19 4817513 4817513 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182919.2 -1 validated p.A293T 0.001 118 0% 153 19% 18 33.3% probably_damaging(0.994) tolerated(0.11) deleterious(0.724) NULL UHRF1 29128 genome.wustl.edu 37 19 4929423 4929423 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398240 +1 known p.A128T 0.000 19 0% 21 28.6% 10 50% benign(0) tolerated(0.58) neutral(0.005) NULL UHRF1 29128 genome.wustl.edu 37 19 4941564 4941564 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000398240 +1 known p.R283 0.451 192 0% 171 29.8% 11 63.6% - - - NULL KDM4B 23030 genome.wustl.edu 37 19 5039858 5039858 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015015.2 +1 validated p.P51 0.041 28 0% 31 22.6% 2 0% - - - HMMSmart_SM00545 PTPRS 5802 genome.wustl.edu 37 19 5212186 5212186 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002850.3 -1 reviewed p.V1615 0.998 79 1.3% 79 15.2% 20 5% - - - HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTPRS 5802 genome.wustl.edu 37 19 5244288 5244288 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002850.3 -1 reviewed p.Y398 0.558 126 0% 145 13.8% 3 0% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPRS 5802 genome.wustl.edu 37 19 5262975 5262975 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002850.3 -1 reviewed p.E193* 1.000 402 0.2% 317 17.4% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin LONP1 9361 genome.wustl.edu 37 19 5714240 5714240 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004793.2 -1 reviewed p.R158C 0.855 466 0% 369 19.8% 41 36.5% possibly_damaging(0.76) deleterious(0) deleterious(0.726) HMMPfam_LON,HMMSmart_LON CATSPERD 257062 genome.wustl.edu 37 19 5754233 5754233 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152784.3 +1 validated p.P419S 0.002 325 0% 158 20.3% 2 0% possibly_damaging(0.948) deleterious(0.01) deleterious(0.796) NULL FUT6 2528 genome.wustl.edu 37 19 5831576 5831576 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000150.2 -1 reviewed p.A335T 0.000 121 0% 137 29.9% 3 66.6% benign(0.025) tolerated(0.59) neutral(0.005) HMMPfam_Glyco_transf_10 FUT3 2525 genome.wustl.edu 37 19 5844684 5844684 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000149.3 -1 reviewed p.T56I 0.001 19 0% 20 45% 1 0% benign(0.121) tolerated(0.12) neutral(0.270) HMMPfam_Glyco_transf_10 VMAC 400673 genome.wustl.edu 37 19 5908910 5908910 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017921.3 +1 validated p.Q89H 0.997 54 0% 48 20.8% 8 12.5% benign(0.256) deleterious(0.01) neutral(0.432) NULL CAPS 828 genome.wustl.edu 37 19 5914950 5914950 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004058.3 +1 validated e3-1 1.000 13 0% 14 28.6% 5 0% - - - - RFX2 5990 genome.wustl.edu 37 19 6016164 6016164 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000635.3 -1 reviewed p.A239V 1.000 266 0% 233 18.9% 8 87.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) "HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain" MLLT1 4298 genome.wustl.edu 37 19 6222328 6222328 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005934.3 -1 validated p.S305L 1.000 99 0% 138 25.4% 3 33.3% unknown(0) deleterious(0.02) - NULL SLC25A23 79085 genome.wustl.edu 37 19 6452442 6452442 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024103.2 -1 validated p.L318M 0.017 39 0% 43 18.6% 37 43.2% benign(0.008) tolerated(0.58) neutral(0.005) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr SLC25A23 79085 genome.wustl.edu 37 19 6454345 6454345 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024103.2 -1 validated p.A262T 1.000 168 0% 167 16.2% 49 30.6% benign(0.012) tolerated(0.2) neutral(0.050) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr DENND1C 79958 genome.wustl.edu 37 19 6478968 6478968 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024898.2 -1 validated p.Q92 0.912 115 0% 126 22.2% 9 0% - - - HMMPfam_DENN,HMMSmart_DENN TUBB4A 10382 genome.wustl.edu 37 19 6495305 6495305 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006087.2 -1 provisional p.G402D 1.000 131 0% 119 25.2% 5 40% probably_damaging(0.995) - - superfamily_Tubulin C-terminal domain-like TUBB4A 10382 genome.wustl.edu 37 19 6495747 6495747 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006087.2 -1 provisional p.V255I 1.000 69 0% 66 13.6% 1 0% benign(0.251) - - superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C TUBB4A 10382 genome.wustl.edu 37 19 6496148 6496148 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006087.2 -1 provisional p.R121Q 1.000 163 0% 154 28.6% 1 100% possibly_damaging(0.796) - - HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like TNFSF9 8744 genome.wustl.edu 37 19 6534833 6534833 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003811.3 +1 reviewed p.A174D 0.000 53 0% 32 25% 12 16.6% possibly_damaging(0.646) tolerated(0.52) neutral(0.235) HMMPfam_TNF,HMMSmart_TNF,superfamily_TNF_like CD70 970 genome.wustl.edu 37 19 6586323 6586323 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001252.3 -1 reviewed p.R97H 0.010 143 0% 77 24.7% 9 55.5% probably_damaging(0.973) tolerated(0.15) deleterious(0.656) HMMPfam_TNF,HMMSmart_SM00207,PatternScan_TNF_1,superfamily_TNF-like TNFSF14 8740 genome.wustl.edu 37 19 6667134 6667134 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003807.3 -1 reviewed p.A96 0.968 126 0% 144 20.1% 0 - - - - HMMSmart_SM00207,superfamily_TNF-like C3 718 genome.wustl.edu 37 19 6684442 6684442 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000064.2 -1 reviewed p.P1377S 1.000 492 0% 355 22.8% 918 21% possibly_damaging(0.875) tolerated(0.81) neutral(0.341) superfamily_Alpha-macroglobulin receptor domain C3 718 genome.wustl.edu 37 19 6714440 6714440 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000064.2 -1 reviewed p.P174 0.000 110 0% 137 16.8% 109 75.2% - - - HMMPfam_A2M_N TRIP10 9322 genome.wustl.edu 37 19 6743800 6743800 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004240.2 +1 validated p.R199* 1.000 414 0% 410 20% 81 7.4% - - - NULL SH2D3A 10045 genome.wustl.edu 37 19 6763741 6763741 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005490.2 -1 validated p.G7* 0.851 110 0% 145 17.2% 9 44.4% - - - NULL VAV1 7409 genome.wustl.edu 37 19 6828716 6828716 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005428.2 +1 reviewed p.N392 1.000 80 0% 92 16.3% 11 0% - - - superfamily_SSF50729 EMR1 2015 genome.wustl.edu 37 19 6913732 6913732 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001974.3 +1 reviewed p.E397D 0.004 211 0% 66 18.2% 2 0% probably_damaging(0.996) tolerated(0.16) deleterious(0.521) superfamily_Family A G protein-coupled receptor-like EMR1 2015 genome.wustl.edu 37 19 6928244 6928244 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381404 +1 known p.L721M 0.000 446 0% 215 11.6% 0 - possibly_damaging(0.904) - - HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like EMR1 2015 genome.wustl.edu 37 19 6937262 6937262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001974.3 +1 reviewed p.T797I 0.006 217 0% 117 15.4% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like INSR 3643 genome.wustl.edu 37 19 7125296 7125296 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000208.2 -1 reviewed p.V1086M 1.000 94 0% 81 18.5% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ARHGEF18 23370 genome.wustl.edu 37 19 7518538 7518538 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130955.1 +1 reviewed p.L493F 0.998 102 1% 40 22.5% 14 50% probably_damaging(0.996) tolerated(0.05) deleterious(0.807) NULL ARHGEF18 23370 genome.wustl.edu 37 19 7518592 7518592 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130955.1 +1 reviewed p.R511C 1.000 50 0% 24 37.5% 12 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like C19orf45 374877 genome.wustl.edu 37 19 7573185 7573185 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198534.2 +1 validated p.A463S 0.000 82 0% 116 17.2% 0 - benign(0) tolerated(0.08) neutral(0.300) NULL ZNF358 140467 genome.wustl.edu 37 19 7585087 7585087 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018083.4 +1 validated p.R320H 0.996 21 0% 17 29.4% 84 50% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MCOLN1 57192 genome.wustl.edu 37 19 7592591 7592591 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000394321 +1 known p.F139 0.009 54 0% 64 20.3% 1 100% - - - NULL MCOLN1 57192 genome.wustl.edu 37 19 7593856 7593856 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020533.2 +1 reviewed p.K378N 1.000 88 0% 87 23% 58 37.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans PNPLA6 10908 genome.wustl.edu 37 19 7623968 7623968 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006702.4 +1 reviewed p.Y1172 1.000 94 0% 91 25.3% 172 36.6% - - - superfamily_Acyl_Trfase/lysoPlipase CAMSAP3 57662 genome.wustl.edu 37 19 7671252 7671252 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080429.2 +1 validated p.E166 1.000 107 0% 145 18.6% 8 62.5% - - - NULL CAMSAP3 57662 genome.wustl.edu 37 19 7672716 7672716 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080429.2 +1 validated p.A222T 1.000 29 0% 47 14.9% 1 100% probably_damaging(0.959) tolerated(0.12) deleterious(0.663) NULL CAMSAP3 57662 genome.wustl.edu 37 19 7673022 7673022 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080429.2 +1 validated p.R238H 1.000 33 0% 37 13.5% 6 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CAMSAP3 57662 genome.wustl.edu 37 19 7677011 7677011 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080429.2 +1 validated p.S571 0.001 71 0% 85 21.2% 13 46.1% - - - NULL CAMSAP3 57662 genome.wustl.edu 37 19 7682830 7682830 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080429.2 +1 validated p.Q1240* 0.572 59 0% 63 27% 95 44.2% - - - superfamily_PRC-barrel domain,HMMPfam_DUF1781 XAB2 56949 genome.wustl.edu 37 19 7684870 7684870 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020196.2 -1 validated p.D786 1.000 20 0% 29 34.5% 171 33.9% - - - NULL XAB2 56949 genome.wustl.edu 37 19 7687717 7687717 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020196.2 -1 validated p.S434 0.980 85 0% 93 22.6% 96 47.9% - - - HMMSmart_HAT,superfamily_SSF48452 EVI5L 115704 genome.wustl.edu 37 19 7911463 7911463 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145245.3 +1 validated p.S12F 1.000 40 0% 71 29.6% 7 14.2% probably_damaging(0.958) deleterious(0.01) deleterious(0.807) NULL MAP2K7 5609 genome.wustl.edu 37 19 7976443 7976443 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145185.2 +1 reviewed p.F353 0.997 51 0% 54 20.4% 18 33.3% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TIMM44 10469 genome.wustl.edu 37 19 7992102 7992102 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006351.3 -1 validated p.I443 0.998 21 0% 28 35.7% 68 45.5% - - - HMMPfam_Tim44 FBN3 84467 genome.wustl.edu 37 19 8162225 8162225 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032447.3 -1 reviewed p.R1745 1.000 58 0% 41 9.8% 0 - - - - PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin KANK3 256949 genome.wustl.edu 37 19 8387781 8387781 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198471.2 -1 validated p.T803I 0.000 127 0% 136 23.5% 17 17.6% benign(0.201) deleterious(0.02) neutral(0.402) NULL KANK3 256949 genome.wustl.edu 37 19 8398988 8398988 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198471.2 -1 validated p.S480 0.000 22 0% 22 27.3% 1 0% - - - NULL HNRNPM 4670 genome.wustl.edu 37 19 8532460 8532460 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005968.3 +1 validated p.V276I 1.000 481 0% 258 15.9% 262 26.7% benign(0.045) deleterious(0) neutral(0.447) HMMSmart_SM00360,superfamily_RNA-binding domain RBD PRAM1 84106 genome.wustl.edu 37 19 8563554 8563554 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032152.3 -1 reviewed p.R380* 0.000 11 0% 13 38.5% 5 0% - - - NULL PRAM1 84106 genome.wustl.edu 37 19 8563792 8563792 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032152.3 -1 reviewed p.P300 0.040 38 0% 58 25.9% 2 0% - - - NULL MYO1F 4542 genome.wustl.edu 37 19 8586482 8586482 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012335.3 -1 validated p.S1076L 0.999 103 0% 168 23.8% 61 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain ADAMTS10 81794 genome.wustl.edu 37 19 8651356 8651356 + Splice_Site SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030957.2 -1 reviewed e19-2 1.000 31 0% 32 25% 0 - - - - - MBD3L1 85509 genome.wustl.edu 37 19 8953494 8953494 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145208.2 +1 reviewed p.G47D 0.451 331 0% 187 30.5% 1 100% probably_damaging(0.99) tolerated(0.91) neutral(0.442) NULL MUC16 94025 genome.wustl.edu 37 19 9000207 9000207 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.P13517L 0.005 719 0% 323 21.7% 22 22.7% probably_damaging(0.999) tolerated(0.07) deleterious(0.809) HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain MUC16 94025 genome.wustl.edu 37 19 9009659 9009659 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.Q13023* 0.001 659 0.2% 204 22.5% 9 33.3% - - - HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain MUC16 94025 genome.wustl.edu 37 19 9019330 9019330 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.T12519 0.143 474 0% 186 22% 4 25% - - - NULL MUC16 94025 genome.wustl.edu 37 19 9048751 9048751 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.E10960D 0.000 464 0% 146 22.6% 1 0% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9057706 9057706 + Frame_Shift_Del DEL T T - novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.I9914fs 0.000 - - - - - - - - - NULL MUC16 94025 genome.wustl.edu 37 19 9059489 9059489 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.E9319D 0.000 453 0% 118 28% 1 100% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9060848 9060848 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.S8866 0.001 324 0% 89 10.1% 0 - - - - NULL MUC16 94025 genome.wustl.edu 37 19 9068215 9068215 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.I6411V 0.001 551 0% 152 17.8% 2 50% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9070689 9070689 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.T5586I 0.003 553 0% 101 19.8% 1 0% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9071378 9071378 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.Q5356 0.000 752 0% 213 21.1% 1 100% - - - NULL MUC16 94025 genome.wustl.edu 37 19 9072433 9072433 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.A5005T 0.000 596 0% 148 26.4% 0 - unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9073037 9073037 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.S4803 0.000 421 0% 92 34.8% 1 100% - - - NULL MUC16 94025 genome.wustl.edu 37 19 9075098 9075098 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.A4116 0.000 470 0% 90 27.8% 1 0% - - - NULL MUC16 94025 genome.wustl.edu 37 19 9083285 9083285 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.A2844T 0.003 567 0% 128 31.2% 1 0% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9091771 9091771 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024690.2 -1 validated p.R15H 0.000 245 0% 66 22.7% 0 - unknown(0) - - NULL ZNF317 57693 genome.wustl.edu 37 19 9271728 9271728 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020933.3 +1 provisional p.T469 0.091 112 0% 40 32.5% 12 16.6% - - - superfamily_C2H2 and C2HC zinc fingers ZNF559 84527 genome.wustl.edu 37 19 9449989 9449989 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032497.1 +1 provisional p.A52T 0.000 563 0% 280 17.5% 2 50% benign(0.003) tolerated(0.37) neutral(0.019) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box ZNF559 84527 genome.wustl.edu 37 19 9452647 9452647 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032497.1 +1 provisional p.V174I 0.000 205 0% 129 22.5% 2 50% probably_damaging(0.957) tolerated(0.91) neutral(0.401) superfamily_SSF57667 ZNF560 147741 genome.wustl.edu 37 19 9578097 9578097 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152476.2 -1 validated p.T509N 0.249 323 0% 109 24.8% 0 - possibly_damaging(0.606) deleterious(0.04) deleterious(0.559) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF426 79088 genome.wustl.edu 37 19 9639990 9639990 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024106.1 -1 provisional p.R244I 0.320 658 0% 405 21.7% 1 0% benign(0.011) deleterious(0.01) neutral(0.406) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF426 79088 genome.wustl.edu 37 19 9640061 9640061 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024106.1 -1 provisional p.Q220 0.001 762 0% 452 21.7% 1 100% - - - superfamily_C2H2 and C2HC zinc fingers ZNF426 79088 genome.wustl.edu 37 19 9640301 9640301 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024106.1 -1 provisional p.H140 0.041 354 0% 235 20.9% 6 16.6% - - - superfamily_C2H2 and C2HC zinc fingers ZNF562 54811 genome.wustl.edu 37 19 9764477 9764477 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130031.1 -1 validated p.H143 0.321 429 0% 200 18.5% 9 55.5% - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers COL5A3 50509 genome.wustl.edu 37 19 10080339 10080339 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015719.3 -1 reviewed p.G1337V 0.998 42 0% 33 27.3% 1 0% unknown(0) deleterious(0) - HMMPfam_Collagen COL5A3 50509 genome.wustl.edu 37 19 10107129 10107129 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015719.3 -1 reviewed p.A468T 1.000 186 0% 148 20.9% 2 0% unknown(0) deleterious(0.04) - NULL RDH8 50700 genome.wustl.edu 37 19 10132243 10132243 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015725.2 +1 validated p.P252S 0.989 99 0% 116 26.7% 0 - probably_damaging(0.992) tolerated(0.32) deleterious(0.472) superfamily_NAD(P)-bd ANGPTL6 83854 genome.wustl.edu 37 19 10203345 10203345 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031917.2 -1 validated p.G445S 0.988 85 0% 109 15.6% 58 17.2% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like SNORD105B 100113382 genome.wustl.edu 37 19 10220501 10220501 + RNA SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_003688.1 +1 provisional NULL 0.976 88 0% 119 11.8% 0 - - - - - PPAN-P2RY11 692312 genome.wustl.edu 37 19 10221277 10221277 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040664.1 +1 validated p.R340W 1.000 34 2.9% 32 25% 67 43.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL P2RY11 5032 genome.wustl.edu 37 19 10224531 10224531 + Missense_Mutation SNP C C T rs144883297 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002566.4 +1 reviewed p.T81M 1.000 45 0% 53 28.3% 26 26.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like DNMT1 1786 genome.wustl.edu 37 19 10270429 10270429 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130823.1 -1 reviewed p.Q395 1.000 350 0% 188 25.5% 31 54.8% - - - NULL ICAM4 3386 genome.wustl.edu 37 19 10397933 10397933 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039132.1 +1 reviewed p.R82H 0.000 33 0% 21 23.8% 0 - benign(0.015) deleterious(0.01) neutral(0.406) HMMPfam_ICAM_N,superfamily_SSF48726 ICAM4 3386 genome.wustl.edu 37 19 10398760 10398760 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039132.1 +1 reviewed p.S240I 0.000 250 0% 236 17.4% 6 33.3% benign(0) tolerated(0.63) neutral(0.004) NULL TYK2 7297 genome.wustl.edu 37 19 10464731 10464731 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003331.4 -1 reviewed p.C965 1.000 109 0% 102 21.6% 86 41.8% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like TYK2 7297 genome.wustl.edu 37 19 10478993 10478993 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003331.4 -1 reviewed p.L99M 0.004 328 0% 217 11.5% 13 23% benign(0.021) tolerated(0.23) neutral(0.043) HMMSmart_B41 KRI1 65095 genome.wustl.edu 37 19 10664753 10664753 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023008.3 -1 validated p.V668 0.999 46 0% 80 18.8% 13 38.4% - - - NULL KRI1 65095 genome.wustl.edu 37 19 10668845 10668845 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023008.3 -1 validated p.L428P 0.020 313 0% 306 23.2% 34 32.3% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) HMMPfam_Kri1 AP1M2 10053 genome.wustl.edu 37 19 10692439 10692439 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005498.4 -1 reviewed p.S128N 1.000 208 0% 182 29.1% 73 30.1% benign(0.115) tolerated(0.11) neutral(0.281) superfamily_SNARE-like SLC44A2 57153 genome.wustl.edu 37 19 10746125 10746125 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020428.3 +1 validated p.N389 0.979 363 0% 345 24.3% 41 34.1% - - - HMMPfam_DUF580 CARM1 10498 genome.wustl.edu 37 19 11031614 11031614 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199141.1 +1 validated p.A510D 1.000 129 0% 102 17.6% 91 2.1% benign(0.103) deleterious(0.02) neutral(0.391) NULL YIPF2 78992 genome.wustl.edu 37 19 11036372 11036372 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024029.3 -1 provisional p.P119 0.177 222 0% 199 21.6% 111 38.7% - - - HMMPfam_Yip1 SMARCA4 6597 genome.wustl.edu 37 19 11096960 11096960 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128849.1 +1 reviewed p.G151S 0.964 29 0% 30 20% 27 55.5% benign(0.06) tolerated(0.46) neutral(0.016) NULL SMARCA4 6597 genome.wustl.edu 37 19 11144050 11144050 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128849.1 +1 reviewed p.E1211K 1.000 60 0% 45 33.3% 253 49% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF52540 KANK2 25959 genome.wustl.edu 37 19 11280630 11280630 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136191.2 -1 validated p.A809T 0.999 164 0% 135 16.3% 52 17.3% possibly_damaging(0.915) deleterious(0) deleterious(0.811) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat KANK2 25959 genome.wustl.edu 37 19 11286586 11286586 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136191.2 -1 validated p.R614W 0.989 156 0% 178 21.3% 29 27.5% probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_Ankyrin repeat DOCK6 57572 genome.wustl.edu 37 19 11332898 11332898 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020812.2 -1 validated p.P1089 0.024 199 0% 172 23.3% 12 8.3% - - - NULL ENSG00000130173 0 genome.wustl.edu 37 19 11348250 11348250 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000397785 +1 known p.E24 0.031 51 0% 37 35.1% 1 0% - - - NULL DOCK6 57572 genome.wustl.edu 37 19 11348887 11348887 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020812.2 -1 validated p.G579 0.998 133 0% 72 27.8% 2 0% - - - NULL DOCK6 57572 genome.wustl.edu 37 19 11352787 11352787 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020812.2 -1 validated p.G526D 0.998 151 0% 138 10.1% 3 0% possibly_damaging(0.49) tolerated(0.62) neutral(0.167) NULL TSPAN16 26526 genome.wustl.edu 37 19 11409599 11409599 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012466.2 +1 reviewed p.V107L 0.458 476 0% 350 23.1% 0 - possibly_damaging(0.552) tolerated(0.37) neutral(0.207) HMMPfam_Tetraspannin CCDC159 126075 genome.wustl.edu 37 19 11459470 11459470 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000427879 +1 known p.V21A 0.000 214 0% 196 27% 0 - unknown(0) deleterious(0) - NULL ENSG00000105520 0 genome.wustl.edu 37 19 11475316 11475316 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000427915 +1 known p.R412W 1.000 111 0% 98 23.5% 12 25% - - - NULL SWSAP1 126074 genome.wustl.edu 37 19 11485454 11485454 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175871.3 +1 validated p.G12D 0.997 24 0% 22 54.5% 11 63.6% unknown(0) deleterious(0) - superfamily_SSF52540 RGL3 57139 genome.wustl.edu 37 19 11510770 11510770 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001035223.2 -1 validated p.E532V 0.991 184 0% 156 24.4% 20 55% probably_damaging(0.997) tolerated(0.37) deleterious(0.485) superfamily_Ras GEF CCDC151 115948 genome.wustl.edu 37 19 11545634 11545634 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145045.4 -1 validated p.H68Q 0.000 123 0% 83 30.1% 0 - benign(0.009) tolerated(1) neutral(0.001) NULL PRKCSH 5589 genome.wustl.edu 37 19 11559063 11559063 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002743.2 +1 reviewed p.E378K 1.000 51 0% 86 30.2% 345 40.2% possibly_damaging(0.949) tolerated(0.14) deleterious(0.643) NULL PRKCSH 5589 genome.wustl.edu 37 19 11559742 11559742 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002743.2 +1 reviewed p.L427I 0.999 131 0% 171 17.5% 573 36.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Man6php_recept,HMMPfam_PRKCSH PRKCSH 5589 genome.wustl.edu 37 19 11559980 11559980 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002743.2 +1 reviewed p.R477H 1.000 35 0% 42 16.7% 562 42.7% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Man6php_recept ELAVL3 1995 genome.wustl.edu 37 19 11565652 11565652 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001420.3 -1 reviewed p.D265N 1.000 40 0% 17 41.2% 0 - benign(0.146) tolerated(0.18) neutral(0.069) NULL ELAVL3 1995 genome.wustl.edu 37 19 11591420 11591420 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001420.3 -1 reviewed p.V2I 1.000 28 0% 25 16% 0 - benign(0.001) tolerated(0.15) neutral(0.241) superfamily_RNA-binding domain RBD ECSIT 51295 genome.wustl.edu 37 19 11618640 11618640 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016581.3 -1 validated p.A274 0.141 40 0% 60 15% 84 26.1% - - - NULL ACP5 54 genome.wustl.edu 37 19 11687196 11687196 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111034.1 -1 reviewed p.Y199 1.000 43 0% 45 17.8% 165 1.2% - - - HMMPfam_Metallophos,superfamily_SSF56300 ZNF627 199692 genome.wustl.edu 37 19 11728117 11728117 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145295.3 +1 validated p.R267* 0.000 290 0% 139 26.6% 8 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF627 199692 genome.wustl.edu 37 19 11728230 11728230 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145295.3 +1 validated p.E304D 0.986 282 0% 135 12.6% 10 40% possibly_damaging(0.755) deleterious(0.03) deleterious(0.643) superfamily_SSF57667 ZNF823 55552 genome.wustl.edu 37 19 11833413 11833413 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080493.2 -1 validated p.T312 0.071 527 0% 270 16.7% 9 22.2% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF440 126070 genome.wustl.edu 37 19 11942580 11942580 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152357.2 +1 validated p.D197Y 0.245 435 0% 186 16.1% 3 33.3% possibly_damaging(0.521) deleterious(0.01) deleterious(0.581) superfamily_SSF57667 ZNF439 90594 genome.wustl.edu 37 19 11979027 11979027 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152262.2 +1 provisional p.P381 0.354 275 0% 97 18.6% 1 0% - - - superfamily_SSF57667 ENSG00000188474 0 genome.wustl.edu 37 19 12223332 12223332 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000339302 +1 known p.R324W 0.075 23 0% 15 26.7% 1 0% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF20 7568 genome.wustl.edu 37 19 12244077 12244077 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021143.2 -1 validated p.E308 0.985 263 0% 197 17.8% 4 50% - - - superfamily_C2H2 and C2HC zinc fingers ZNF625 90589 genome.wustl.edu 37 19 12256384 12256384 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145233.2 -1 provisional p.A217S 0.251 495 0% 315 26% 0 - benign(0.119) tolerated(0.15) neutral(0.251) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF625 90589 genome.wustl.edu 37 19 12258606 12258606 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439556 -1 known p.V7 0.864 534 0% 427 20.4% 3 33.3% - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF136 7695 genome.wustl.edu 37 19 12297840 12297840 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003437.2 +1 validated p.R216I 0.997 267 0% 147 21.1% 5 40% probably_damaging(0.98) tolerated(0.1) deleterious(0.710) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF136 7695 genome.wustl.edu 37 19 12298092 12298092 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003437.2 +1 validated p.R300I 0.998 267 0% 208 18.8% 4 0% benign(0.004) tolerated(0.08) neutral(0.300) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF44 51710 genome.wustl.edu 37 19 12383897 12383897 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016264.3 -1 validated p.G391 0.996 353 0% 302 10.3% 4 50% - - - superfamily_C2H2 and C2HC zinc fingers ZNF44 51710 genome.wustl.edu 37 19 12384433 12384433 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016264.3 -1 validated p.R213C 0.000 413 0.2% 348 19.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF563 147837 genome.wustl.edu 37 19 12429973 12429973 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145276.2 -1 validated p.A289V 0.904 459 0% 215 20.5% 5 40% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF442 79973 genome.wustl.edu 37 19 12461659 12461659 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030824.2 -1 validated p.P247H 0.000 457 0.2% 288 25.7% 1 0% possibly_damaging(0.687) tolerated(0.14) deleterious(0.495) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF443 10224 genome.wustl.edu 37 19 12541882 12541882 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005815.4 -1 validated p.K368N 0.000 632 0% 396 19.4% 6 16.6% probably_damaging(0.99) tolerated(0.34) neutral(0.465) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF490 57474 genome.wustl.edu 37 19 12691321 12691321 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020714.2 -1 validated p.T523N 0.013 261 0% 197 20.8% 5 40% benign(0.017) tolerated(0.11) neutral(0.272) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF791 163049 genome.wustl.edu 37 19 12739613 12739613 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153358.2 +1 validated p.L424F 0.001 221 0% 208 25% 5 20% benign(0.082) tolerated(0.71) neutral(0.007) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MAN2B1 4125 genome.wustl.edu 37 19 12759108 12759108 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000528.3 -1 reviewed p.A849S 0.000 18 0% 15 26.7% 65 27.6% benign(0.001) tolerated(0.65) neutral(0.003) superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C TNPO2 30000 genome.wustl.edu 37 19 12816392 12816392 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136196.1 -1 validated p.A593T 1.000 65 0% 61 23% 29 58.6% probably_damaging(0.979) deleterious(0) deleterious(0.867) superfamily_ARM repeat ASNA1 439 genome.wustl.edu 37 19 12849386 12849386 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004317.2 +1 validated p.P75T 1.000 371 0% 312 16.3% 146 29.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ArsA_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases BEST2 54831 genome.wustl.edu 37 19 12865484 12865484 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017682.2 +1 reviewed p.R122 0.965 33 0% 21 19% 0 - - - - HMMPfam_Bestrophin HOOK2 29911 genome.wustl.edu 37 19 12874115 12874115 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013312.2 -1 validated p.R714H 0.290 103 0% 90 15.6% 33 39.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_HOOK HOOK2 29911 genome.wustl.edu 37 19 12881760 12881760 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013312.2 -1 validated p.E296D 1.000 54 0% 74 18.9% 14 42.8% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_HOOK HOOK2 29911 genome.wustl.edu 37 19 12882247 12882247 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013312.2 -1 validated p.D188 0.001 120 0% 139 19.4% 13 23% - - - HMMPfam_HOOK PRDX2 7001 genome.wustl.edu 37 19 12907946 12907946 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000428341 -1 known p.R162Q 0.532 388 0% 420 21.9% 949 34.1% - - - NULL PRDX2 7001 genome.wustl.edu 37 19 12912038 12912038 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005809.4 -1 reviewed p.P13L 0.998 98 0% 82 17.1% 705 38.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like MAST1 22983 genome.wustl.edu 37 19 12963197 12963197 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014975.2 +1 validated p.D355 0.756 79 0% 80 18.8% 0 - - - - superfamily_Kinase_like LOC100287872 100287872 genome.wustl.edu 37 19 12989405 12989405 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343642.1 +1 model p.R147M 0.005 292 0% 277 24.2% 0 - - - - NULL SYCE2 256126 genome.wustl.edu 37 19 13029108 13029108 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105578.1 -1 validated p.P20H 0.000 224 0% 221 22.2% 0 - benign(0.354) tolerated(0.07) neutral(0.431) NULL RAD23A 5886 genome.wustl.edu 37 19 13058806 13058806 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005053.2 +1 reviewed p.V73F 1.000 527 0.2% 412 23.8% 312 41.9% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236 NFIX 4784 genome.wustl.edu 37 19 13201160 13201160 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438869 +1 known p.G492R 1.000 168 0.6% 180 26.1% 25 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CTF_NFI CACNA1A 773 genome.wustl.edu 37 19 13346088 13346088 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127222.1 -1 reviewed p.A1690T 1.000 194 0% 125 16% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1A 773 genome.wustl.edu 37 19 13470428 13470428 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127222.1 -1 reviewed p.L324I 1.000 323 0.6% 135 17% 0 - possibly_damaging(0.918) deleterious(0.01) deleterious(0.774) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1A 773 genome.wustl.edu 37 19 13470567 13470567 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127222.1 -1 reviewed p.P277 0.761 212 0% 90 27.8% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CCDC130 81576 genome.wustl.edu 37 19 13873501 13873501 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030818.2 +1 provisional p.G270 0.122 22 0% 22 18.2% 22 31.8% - - - HMMPfam_DUF572 MRI1 84245 genome.wustl.edu 37 19 13879744 13879744 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031727.2 +1 validated p.Y277 1.000 105 0% 195 25.1% 40 45% - - - HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like ZSWIM4 65249 genome.wustl.edu 37 19 13928535 13928535 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023072.2 +1 validated e8-1 0.994 42 0% 29 20.7% 0 - - - - - ZSWIM4 65249 genome.wustl.edu 37 19 13941161 13941161 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023072.2 +1 validated p.R756H 1.000 40 0% 36 36.1% 20 55% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NANOS3 342977 genome.wustl.edu 37 19 13988256 13988256 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098622.1 +1 provisional p.R65H 0.000 45 0% 47 21.3% 0 - benign(0.003) tolerated(0.1) neutral(0.286) NULL C19orf57 79173 genome.wustl.edu 37 19 13996858 13996858 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024323.3 -1 predicted p.S560L 0.000 59 0% 47 19.1% 0 - benign(0.119) tolerated(0.13) neutral(0.262) NULL CC2D1A 54862 genome.wustl.edu 37 19 14040916 14040916 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017721.4 +1 reviewed p.Q912H 0.994 44 0% 37 35.1% 41 58.5% possibly_damaging(0.716) tolerated(0.52) neutral(0.268) NULL RFX1 5989 genome.wustl.edu 37 19 14094041 14094041 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002918.4 -1 validated p.H157 0.741 66 0% 107 20.6% 5 20% - - - NULL IL27RA 9466 genome.wustl.edu 37 19 14150626 14150626 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004843.2 +1 reviewed p.E146D 0.806 78 0% 110 15.5% 7 0% probably_damaging(0.971) tolerated(0.15) deleterious(0.654) HMMSmart_SM00060,superfamily_Fibronectin type III PALM3 342979 genome.wustl.edu 37 19 14165830 14165830 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145028.1 -1 validated p.V203 0.000 96 0% 101 21.8% 0 - - - - NULL PRKACA 5566 genome.wustl.edu 37 19 14208207 14208207 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002730.3 -1 reviewed p.P244L 1.000 79 0% 104 23.1% 82 37.8% benign(0.211) deleterious(0) neutral(0.465) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PRKACA 5566 genome.wustl.edu 37 19 14208660 14208660 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002730.3 -1 reviewed p.T154 0.832 203 0% 165 15.2% 102 27.4% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase LPHN1 22859 genome.wustl.edu 37 19 14268752 14268752 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008701.2 -1 reviewed p.T831I 1.000 190 0% 202 26.7% 13 23% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_GPS,HMMSmart_SM00303 LPHN1 22859 genome.wustl.edu 37 19 14269169 14269169 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008701.2 -1 reviewed p.F787S 1.000 40 0% 40 27.5% 6 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL LPHN1 22859 genome.wustl.edu 37 19 14272322 14272322 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008701.2 -1 reviewed p.P443S 1.000 84 0% 49 22.4% 2 50% benign(0.003) tolerated(0.06) neutral(0.323) NULL LPHN1 22859 genome.wustl.edu 37 19 14288549 14288549 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008701.2 -1 reviewed p.S26 1.000 14 0% 11 45.5% 3 33.3% - - - NULL DDX39A 10212 genome.wustl.edu 37 19 14521970 14521970 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005804.2 -1 reviewed p.F148 0.444 88 0% 105 22.9% 132 48.4% - - - HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540 DDX39A 10212 genome.wustl.edu 37 19 14523994 14523994 + Silent SNP G G A rs191833585 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005804.2 -1 reviewed p.Y13 0.247 184 0% 236 23.3% 130 43% - - - NULL PKN1 5585 genome.wustl.edu 37 19 14568874 14568874 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213560.1 +1 reviewed p.N405 1.000 157 0% 142 27.5% 112 26.7% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) PKN1 5585 genome.wustl.edu 37 19 14574911 14574911 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_213560.1 +1 reviewed p.S565 0.000 52 0% 51 23.5% 190 36.3% - - - NULL NDUFB7 4713 genome.wustl.edu 37 19 14677627 14677627 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004146.4 -1 reviewed p.F77L 1.000 97 0% 115 24.3% 520 37.1% benign(0) tolerated(0.65) neutral(0.003) HMMPfam_NDUF_B7 ZNF333 84449 genome.wustl.edu 37 19 14805892 14805892 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032433.2 +1 validated p.R25M 0.001 318 0% 292 22.9% 2 50% possibly_damaging(0.922) deleterious(0) deleterious(0.816) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box ZNF333 84449 genome.wustl.edu 37 19 14829270 14829270 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032433.2 +1 validated p.Y377 0.000 174 0% 62 29% 3 33.3% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 EMR2 30817 genome.wustl.edu 37 19 14854549 14854549 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013447.2 -1 reviewed p.T744M 0.782 229 0.4% 76 19.7% 3 0% probably_damaging(1) tolerated(0.17) deleterious(0.559) HMMPfam_7tm_2 EMR2 30817 genome.wustl.edu 37 19 14865913 14865913 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000392964 -1 known p.L146M 0.997 94 0% 60 16.7% 1 0% unknown(0) deleterious(0.02) - NULL OR7C1 26664 genome.wustl.edu 37 19 14910627 14910627 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198944.1 -1 validated p.G108R 0.024 255 0% 128 21.1% 0 - probably_damaging(0.963) deleterious(0.04) deleterious(0.754) HMMPfam_7tm_1,superfamily_SSF81321 OR1I1 126370 genome.wustl.edu 37 19 15198858 15198858 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004713.1 +1 provisional p.L328 0.010 183 0% 83 32.5% 0 - - - - NULL SYDE1 85360 genome.wustl.edu 37 19 15224441 15224441 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033025.4 +1 provisional p.H625Q 0.994 44 0% 37 29.7% 9 44.4% benign(0.035) tolerated(0.07) neutral(0.321) NULL ILVBL 10994 genome.wustl.edu 37 19 15233997 15233997 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006844.3 -1 reviewed p.A132V 0.992 44 0% 61 18% 53 26.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding) NOTCH3 4854 genome.wustl.edu 37 19 15272347 15272347 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000435.2 -1 reviewed p.R2031H 1.000 17 0% 35 20% 9 11.1% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) NULL NOTCH3 4854 genome.wustl.edu 37 19 15272413 15272413 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000435.2 -1 reviewed p.R2009Q 0.997 33 0% 55 23.6% 18 16.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Ankyrin repeat NOTCH3 4854 genome.wustl.edu 37 19 15276632 15276632 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000435.2 -1 reviewed p.T1878I 1.000 19 0% 31 22.6% 15 6.6% possibly_damaging(0.849) deleterious(0.01) deleterious(0.732) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat NOTCH3 4854 genome.wustl.edu 37 19 15280932 15280932 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000435.2 -1 reviewed p.M1722V 1.000 64 0% 103 20.4% 21 4.7% benign(0.001) tolerated(0.63) neutral(0.004) NULL BRD4 23476 genome.wustl.edu 37 19 15350611 15350611 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058243.2 -1 reviewed p.V1102I 0.976 92 1.1% 67 14.9% 55 38.1% possibly_damaging(0.789) - - NULL AKAP8 10270 genome.wustl.edu 37 19 15465846 15465846 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005858.2 -1 reviewed p.A653 0.000 60 0% 76 32.9% 26 42.3% - - - NULL AKAP8 10270 genome.wustl.edu 37 19 15483054 15483054 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005858.2 -1 reviewed p.D322 1.000 242 0% 267 22.5% 16 31.2% - - - NULL AKAP8L 26993 genome.wustl.edu 37 19 15512388 15512388 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014371.2 -1 validated p.S130L 0.992 41 0% 39 17.9% 54 53.7% possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL RASAL3 64926 genome.wustl.edu 37 19 15565598 15565598 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022904.1 -1 validated p.L610M 1.000 82 0% 135 23.7% 38 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP PGLYRP2 114770 genome.wustl.edu 37 19 15586787 15586787 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052890.3 -1 validated p.L232I 1.000 88 1.1% 61 24.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CYP4F22 126410 genome.wustl.edu 37 19 15651359 15651359 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173483.3 +1 reviewed p.R257H 0.016 67 0% 69 29% 1 0% benign(0.012) deleterious(0.02) neutral(0.384) HMMPfam_p450,superfamily_Cytochrome_P450 CYP4F8 11283 genome.wustl.edu 37 19 15734860 15734860 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441682 +1 known p.E356D 0.964 238 0% 215 18.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_p450,superfamily_Cytochrome P450 LOC100287986 100287986 genome.wustl.edu 37 19 15739019 15739019 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343618.1 -1 model p.S101 0.000 32 0% 40 30% 0 - - - - NULL CYP4F8 11283 genome.wustl.edu 37 19 15739644 15739644 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000441682 +1 known p.A462V 0.526 102 0% 115 13% 0 - benign(0.144) deleterious(0) neutral(0.457) HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450 HSH2D 84941 genome.wustl.edu 37 19 16265283 16265283 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000253680 +1 known p.P152 0.000 62 0% 65 16.9% 35 40% - - - NULL AP1M1 8907 genome.wustl.edu 37 19 16338427 16338427 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130524.1 +1 reviewed p.E260K 1.000 178 0% 161 25.5% 116 32.7% possibly_damaging(0.874) deleterious(0) deleterious(0.784) HMMPfam_Adap_comp_sub,superfamily_AP50 EPS15L1 58513 genome.wustl.edu 37 19 16472599 16472599 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021235.1 -1 provisional p.D859 1.000 147 0% 169 12.4% 15 13.3% - - - NULL CALR3 125972 genome.wustl.edu 37 19 16601337 16601337 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145046.3 -1 validated p.R80C 0.996 426 0% 289 22.8% 0 - possibly_damaging(0.835) deleterious(0) deleterious(0.763) HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl C19orf44 84167 genome.wustl.edu 37 19 16614129 16614129 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032207.2 +1 validated p.G338E 0.000 90 0% 53 26.4% 3 33.3% possibly_damaging(0.796) tolerated(0.69) neutral(0.301) NULL C19orf44 84167 genome.wustl.edu 37 19 16623837 16623837 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032207.2 +1 validated p.A551V 0.952 32 0% 39 28.2% 3 66.6% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) NULL CHERP 10523 genome.wustl.edu 37 19 16631675 16631675 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006387.5 -1 validated p.M721I 1.000 108 0% 190 17.4% 37 21.6% benign(0.058) deleterious(0.05) neutral(0.349) NULL CHERP 10523 genome.wustl.edu 37 19 16632375 16632375 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006387.5 -1 validated p.E691K 1.000 42 0% 37 29.7% 29 37.9% possibly_damaging(0.891) deleterious(0.04) deleterious(0.700) NULL MED26 9441 genome.wustl.edu 37 19 16687311 16687311 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004831.3 -1 validated p.R444W 0.999 118 0.8% 157 21.7% 12 41.6% probably_damaging(0.985) deleterious(0.01) deleterious(0.838) NULL TMEM38A 79041 genome.wustl.edu 37 19 16797207 16797207 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024074.1 +1 provisional p.V221 0.980 344 0% 191 16.2% 8 37.5% - - - HMMPfam_DUF714 NWD1 284434 genome.wustl.edu 37 19 16874748 16874748 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007525.2 +1 validated p.E613G 0.994 60 0% 55 14.5% 0 - probably_damaging(0.992) tolerated(0.33) deleterious(0.472) NULL NWD1 284434 genome.wustl.edu 37 19 16884094 16884094 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007525.2 +1 validated p.P721 0.219 36 0% 13 38.5% 0 - - - - superfamily_WD40 repeat-like NWD1 284434 genome.wustl.edu 37 19 16902224 16902224 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007525.2 +1 validated p.P867S 0.193 251 0.4% 87 27.6% 1 0% benign(0.059) tolerated(0.39) neutral(0.020) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 NWD1 284434 genome.wustl.edu 37 19 16918423 16918423 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007525.2 +1 validated p.S1120T 0.977 123 0% 57 17.5% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMSmart_SM00320,superfamily_WD40 repeat-like SIN3B 23309 genome.wustl.edu 37 19 16980851 16980851 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015260.1 +1 provisional p.S828N 0.002 24 0% 24 20.8% 12 8.3% benign(0) tolerated(0.78) neutral(0.001) NULL CPAMD8 27151 genome.wustl.edu 37 19 17004035 17004035 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015692.2 -1 validated p.R1895W 0.000 88 0% 103 28.2% 4 50% probably_damaging(0.99) - - NULL MYO9B 4650 genome.wustl.edu 37 19 17303724 17303724 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004145.3 +1 reviewed p.R994Q 0.148 39 0% 37 18.9% 21 28.5% benign(0.049) tolerated(0.69) neutral(0.005) HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540 MYO9B 4650 genome.wustl.edu 37 19 17311162 17311162 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004145.3 +1 reviewed p.G1433 0.001 135 0% 113 20.4% 14 35.7% - - - NULL USHBP1 83878 genome.wustl.edu 37 19 17361161 17361161 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031941.3 -1 validated p.E662V 1.000 54 0% 50 20% 4 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL USHBP1 83878 genome.wustl.edu 37 19 17370192 17370192 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031941.3 -1 validated p.L318I 1.000 139 0% 137 13.9% 2 0% possibly_damaging(0.791) deleterious(0.03) deleterious(0.661) HMMPfam_MCC-bdg_PDZ ANKLE1 126549 genome.wustl.edu 37 19 17394472 17394472 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152363.4 +1 validated p.R300M 0.000 39 0% 60 15% 0 - possibly_damaging(0.705) deleterious(0.04) deleterious(0.603) NULL ANO8 57719 genome.wustl.edu 37 19 17438377 17438377 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020959.2 -1 validated p.K807R 1.000 21 0% 27 22.2% 15 40% unknown(0) tolerated(0.25) - HMMPfam_DUF590 GTPBP3 84705 genome.wustl.edu 37 19 17449934 17449934 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133644.2 +1 validated p.D255N 0.965 158 0% 160 27.5% 28 50% benign(0.002) tolerated(0.51) neutral(0.009) superfamily_SSF52540 PLVAP 83483 genome.wustl.edu 37 19 17471370 17471370 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031310.1 -1 provisional p.R430M 0.777 195 0% 135 14.8% 24 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_PV-1 SLC27A1 376497 genome.wustl.edu 37 19 17608167 17608167 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198580.1 +1 provisional p.R367H 1.000 48 0% 29 13.8% 6 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AMP-binding,superfamily_SSF56801 SLC27A1 376497 genome.wustl.edu 37 19 17612127 17612127 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198580.1 +1 provisional p.S561N 0.000 36 0% 44 13.6% 15 13.3% benign(0) tolerated(1) - superfamily_SSF56801 UNC13A 23025 genome.wustl.edu 37 19 17768913 17768913 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080421.2 -1 validated p.S330Y 1.000 408 0% 235 19.6% 0 - benign(0.223) deleterious(0) neutral(0.467) NULL FCHO1 23149 genome.wustl.edu 37 19 17885262 17885262 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015122.2 +1 validated p.R299W 1.000 34 0% 52 38.5% 3 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FCHO1 23149 genome.wustl.edu 37 19 17886898 17886898 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015122.2 +1 validated p.A370 0.871 125 0% 41 36.6% 6 0% - - - NULL JAK3 3718 genome.wustl.edu 37 19 17951064 17951064 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000215.3 -1 reviewed p.S410I 1.000 92 0% 99 29.3% 5 0% benign(0.067) tolerated(0.2) neutral(0.053) HMMSmart_SM00252,superfamily_SH2 domain KCNN1 3780 genome.wustl.edu 37 19 18096162 18096162 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002248.3 +1 reviewed p.A320V 1.000 217 0% 184 10.9% 1 0% possibly_damaging(0.469) deleterious(0.01) deleterious(0.559) HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels KCNN1 3780 genome.wustl.edu 37 19 18109054 18109054 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002248.3 +1 reviewed p.A491T 0.041 12 0% 17 23.5% 1 0% benign(0) tolerated(0.67) neutral(0.003) NULL MAST3 23031 genome.wustl.edu 37 19 18255858 18255858 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015016.1 +1 validated p.S924Y 1.000 53 0% 48 16.7% 9 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MAST3 23031 genome.wustl.edu 37 19 18256034 18256034 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015016.1 +1 validated p.V983I 1.000 64 0% 76 25% 3 0% benign(0.123) deleterious(0.03) neutral(0.374) HMMSmart_PDZ,superfamily_PDZ MAST3 23031 genome.wustl.edu 37 19 18257792 18257792 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015016.1 +1 validated p.R1059S 0.957 49 0% 50 36% 9 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PIK3R2 5296 genome.wustl.edu 37 19 18272853 18272853 + Missense_Mutation SNP C C T rs148193042 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005027.2 +1 validated p.A298V 0.008 237 0% 266 21.4% 22 45.4% benign(0.047) tolerated(0.2) neutral(0.052) NULL IFI30 10437 genome.wustl.edu 37 19 18286007 18286007 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006332.3 +1 reviewed p.T97M 0.998 123 0% 110 23.6% 1302 21.4% probably_damaging(0.996) deleterious(0.05) deleterious(0.807) HMMPfam_GILT RAB3A 5864 genome.wustl.edu 37 19 18313379 18313379 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002866.4 -1 validated p.D58N 1.000 269 0% 277 22.7% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases PDE4C 5143 genome.wustl.edu 37 19 18327692 18327692 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000923.3 -1 validated p.A448 0.295 64 0% 104 26.9% 2 100% - - - HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like KIAA1683 80726 genome.wustl.edu 37 19 18375922 18375922 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145304.1 -1 validated p.G810R 0.000 72 0% 38 15.8% 1 100% possibly_damaging(0.923) tolerated(0.54) neutral(0.380) NULL KIAA1683 80726 genome.wustl.edu 37 19 18376777 18376777 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145304.1 -1 validated p.V525M 0.000 196 0% 174 24.7% 1 100% probably_damaging(0.978) deleterious(0.04) deleterious(0.769) NULL KIAA1683 80726 genome.wustl.edu 37 19 18377506 18377506 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145304.1 -1 validated p.K282Q 0.041 352 0% 299 20.1% 2 50% benign(0.164) tolerated(0.08) neutral(0.315) NULL ISYNA1 51477 genome.wustl.edu 37 19 18547532 18547532 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016368.4 -1 validated p.R191C 0.989 14 0% 17 47.1% 248 51.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NAD_binding_5,superfamily_NAD(P)-binding Rossmann-fold domains ELL 8178 genome.wustl.edu 37 19 18561309 18561309 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006532.3 -1 validated p.P481 0.003 47 0% 45 17.8% 15 26.6% - - - NULL ELL 8178 genome.wustl.edu 37 19 18583664 18583664 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006532.3 -1 validated p.R55Q 1.000 221 0% 174 21.8% 14 35.7% possibly_damaging(0.855) - - HMMPfam_ELL CRTC1 23373 genome.wustl.edu 37 19 18857870 18857870 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098482.1 +1 validated p.S146I 1.000 129 0% 176 25% 15 46.6% probably_damaging(0.998) deleterious(0.05) deleterious(0.820) NULL CRTC1 23373 genome.wustl.edu 37 19 18879597 18879597 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098482.1 +1 validated p.I454 0.206 36 0% 44 31.8% 10 70% - - - NULL UPF1 5976 genome.wustl.edu 37 19 18971741 18971741 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002911.3 +1 reviewed p.L803M 1.000 42 0% 71 19.7% 61 42.6% benign(0.412) deleterious(0) deleterious(0.578) superfamily_SSF52540 SUGP2 10147 genome.wustl.edu 37 19 19105284 19105284 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017392.3 -1 reviewed p.S1047L 0.995 275 0% 199 20.6% 57 38.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_G-patch,HMMSmart_SM00443 SUGP2 10147 genome.wustl.edu 37 19 19120669 19120669 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017392.3 -1 reviewed p.A778D 0.015 185 0% 143 23.1% 40 27.5% benign(0) tolerated(0.32) neutral(0.024) superfamily_Surp module (SWAP domain Pfam 01805) ARMC6 93436 genome.wustl.edu 37 19 19162708 19162708 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033415.2 +1 reviewed p.T161I 0.009 51 0% 54 18.5% 42 40.4% benign(0.02) tolerated(0.07) neutral(0.320) HMMSmart_SM00185,superfamily_ARM repeat ARMC6 93436 genome.wustl.edu 37 19 19162759 19162759 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033415.2 +1 reviewed p.R178H 0.937 49 0% 53 37.7% 48 39.5% possibly_damaging(0.806) tolerated(0.14) deleterious(0.553) HMMSmart_SM00185,superfamily_ARM repeat TMEM161A 54929 genome.wustl.edu 37 19 19232220 19232220 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017814.1 -1 provisional p.H271Y 1.000 160 0% 138 18.8% 90 42.2% probably_damaging(0.998) tolerated(0.1) deleterious(0.761) HMMPfam_Tmemb_161AB MEF2B 100271849 genome.wustl.edu 37 19 19261516 19261516 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145785.1 -1 validated p.R10H 1.000 540 0.2% 488 21.1% 23 39.1% possibly_damaging(0.914) deleterious(0) deleterious(0.810) HMMPfam_SRF-TF,HMMSmart_SM00432,PatternScan_MADS_BOX_1,superfamily_SRF-like RFXANK 8625 genome.wustl.edu 37 19 19308340 19308340 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003721.2 +1 reviewed p.L116 0.350 31 0% 29 17.2% 288 44% - - - superfamily_Ankyrin repeat RFXANK 8625 genome.wustl.edu 37 19 19310016 19310016 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003721.2 +1 reviewed p.L229I 0.999 53 0% 50 14% 510 30.1% probably_damaging(0.986) tolerated(0.16) deleterious(0.494) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat NCAN 1463 genome.wustl.edu 37 19 19337447 19337447 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004386.2 +1 validated p.V409M 0.837 122 0% 106 19.8% 0 - benign(0.044) tolerated(0.15) neutral(0.243) NULL NCAN 1463 genome.wustl.edu 37 19 19344629 19344629 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004386.2 +1 validated p.C1017 0.999 278 0% 268 19% 1 100% - - - HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196 HAPLN4 404037 genome.wustl.edu 37 19 19371874 19371874 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023002.2 -1 validated p.G78S 0.909 10 0% 16 31.2% 0 - benign(0.002) tolerated(0.44) neutral(0.013) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin SUGP1 57794 genome.wustl.edu 37 19 19416793 19416793 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172231.2 -1 validated p.G135R 1.000 10 0% 13 38.5% 17 47% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL MAU2 23383 genome.wustl.edu 37 19 19454717 19454717 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015329.3 +1 validated p.V349I 1.000 56 0% 46 23.9% 21 28.5% possibly_damaging(0.896) tolerated(0.16) neutral(0.413) HMMPfam_Cohesin_load,superfamily_TPR-like CILP2 148113 genome.wustl.edu 37 19 19654085 19654085 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153221.2 +1 validated p.R336* 0.464 39 0% 37 13.5% 0 - - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 CILP2 148113 genome.wustl.edu 37 19 19654644 19654644 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153221.2 +1 validated p.C430 0.999 53 0% 70 25.7% 0 - - - - NULL LPAR2 9170 genome.wustl.edu 37 19 19737799 19737799 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004720.5 -1 reviewed p.L99I 1.000 33 0% 22 22.7% 13 53.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 GMIP 51291 genome.wustl.edu 37 19 19746523 19746523 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016573.2 -1 reviewed p.G445 0.000 78 0% 186 29.6% 11 18.1% - - - NULL ATP13A1 57130 genome.wustl.edu 37 19 19770513 19770513 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020410.2 -1 validated p.V192M 0.979 148 0% 179 25.1% 24 45.8% probably_damaging(0.953) deleterious(0.04) deleterious(0.746) NULL ZNF101 94039 genome.wustl.edu 37 19 19790315 19790315 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033204.2 +1 provisional p.V173L 0.701 162 0% 94 22.3% 11 45.4% benign(0.008) tolerated(0.13) neutral(0.253) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF506 440515 genome.wustl.edu 37 19 19905920 19905920 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099269.2 -1 validated p.C259Y 0.847 179 0% 155 20% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF93 81931 genome.wustl.edu 37 19 20044040 20044040 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031218.3 +1 validated p.K92 0.850 414 0% 226 13.7% 2 50% - - - NULL ZNF93 81931 genome.wustl.edu 37 19 20044426 20044426 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031218.3 +1 validated p.R221I 0.536 110 0% 107 29.9% 5 80% benign(0.003) tolerated(0.2) neutral(0.049) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF93 81931 genome.wustl.edu 37 19 20045158 20045158 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031218.3 +1 validated p.S465Y 0.000 61 0% 33 30.3% 13 46.1% benign(0.016) tolerated(1) neutral(0.001) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers LOC100128975 100128975 genome.wustl.edu 37 19 20047677 20047677 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001719745.1 -1 model p.S133R 0.982 54 0% 39 41% 0 - - - - NULL ZNF682 91120 genome.wustl.edu 37 19 20135062 20135062 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033196.2 -1 validated p.L43M 0.967 385 0% 306 21.6% 4 50% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF90 7643 genome.wustl.edu 37 19 20228668 20228668 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007138.1 +1 validated p.R102K 0.006 618 0% 314 24.5% 1 0% benign(0.007) tolerated(0.42) neutral(0.014) NULL ZNF90 7643 genome.wustl.edu 37 19 20229666 20229666 + Frame_Shift_Del DEL A A - novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007138.1 +1 validated p.K435fs 0.027 - - - - - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF486 90649 genome.wustl.edu 37 19 20308487 20308487 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052852.2 +1 provisional p.T323M 0.121 191 0% 138 23.9% 1 100% benign(0.176) deleterious(0.01) neutral(0.422) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF737 100129842 genome.wustl.edu 37 19 20728763 20728763 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343624.1 -1 model p.A82 0.129 519 0% 284 19.7% 2 50% - - - NULL ZNF66P 7617 genome.wustl.edu 37 19 20976658 20976658 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000425625 +1 known p.R113I 0.002 591 0% 364 26.9% 3 0% - - - NULL ZNF430 80264 genome.wustl.edu 37 19 21239788 21239788 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025189.3 +1 validated p.R225I 0.392 221 0% 229 20.5% 2 0% benign(0.009) tolerated(0.09) neutral(0.297) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF430 80264 genome.wustl.edu 37 19 21240656 21240656 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025189.3 +1 validated p.K514 0.007 267 0% 226 16.4% 4 25% - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF714 148206 genome.wustl.edu 37 19 21300877 21300877 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000291770 +1 known p.K469 0.479 214 0% 104 14.4% 5 60% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF431 170959 genome.wustl.edu 37 19 21366070 21366070 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133473.2 +1 validated p.G322S 1.000 156 0.6% 51 33.3% 5 20% benign(0.319) deleterious(0.02) deleterious(0.483) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF100 163227 genome.wustl.edu 37 19 21910391 21910391 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173531.3 -1 validated p.A241 0.006 266 0% 305 24.6% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF100 163227 genome.wustl.edu 37 19 21910469 21910469 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173531.3 -1 validated p.C215* 0.004 264 0% 327 20.8% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF100 163227 genome.wustl.edu 37 19 21910501 21910501 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173531.3 -1 validated p.F205V 0.005 317 0% 362 13.3% 2 50% possibly_damaging(0.807) deleterious(0.01) deleterious(0.710) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF43 7594 genome.wustl.edu 37 19 21991006 21991006 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003423.2 -1 validated p.T611 0.307 226 0% 104 16.3% 8 75% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF43 7594 genome.wustl.edu 37 19 21992001 21992001 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003423.2 -1 validated p.R280C 0.991 157 0% 95 22.1% 7 42.8% benign(0.017) deleterious(0) neutral(0.445) superfamily_C2H2 and C2HC zinc fingers ZNF43 7594 genome.wustl.edu 37 19 21992531 21992531 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003423.2 -1 validated p.R103I 0.016 217 0% 83 15.7% 6 16.6% probably_damaging(0.98) tolerated(0.07) deleterious(0.743) NULL ZNF208 7757 genome.wustl.edu 37 19 22155510 22155510 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007153.3 -1 provisional p.P676S 0.805 138 0% 42 31% 0 - probably_damaging(1) tolerated(0.2) deleterious(0.549) superfamily_SSF57667 ZNF257 113835 genome.wustl.edu 37 19 22271855 22271855 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033468.2 +1 provisional p.E435K 0.080 160 0.6% 84 11.9% 1 0% benign(0.102) deleterious(0.03) neutral(0.372) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF676 163223 genome.wustl.edu 37 19 22363310 22363310 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001411.2 -1 provisional p.N403K 0.000 219 0% 73 19.2% 0 - benign(0) tolerated(0.28) neutral(0.032) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF729 100287226 genome.wustl.edu 37 19 22496580 22496580 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000357491 +1 known p.R121* 0.000 264 0% 167 16.8% 0 - - - - NULL LOC100287226 100287226 genome.wustl.edu 37 19 22498582 22498582 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343636.1 +1 model p.V655A 1.000 45 0% 33 15.2% 0 - benign(0.15) tolerated(0.16) neutral(0.072) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers LOC100287226 100287226 genome.wustl.edu 37 19 22499572 22499572 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343636.1 +1 model p.T985I 0.010 83 0% 71 18.3% 0 - benign(0.045) tolerated(0.23) neutral(0.044) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF98 148198 genome.wustl.edu 37 19 22574906 22574906 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098626.1 -1 validated p.P377 0.236 148 0% 57 26.3% 1 0% - - - superfamily_C2H2 and C2HC zinc fingers ZNF99 7652 genome.wustl.edu 37 19 22939405 22939405 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080409.1 -1 provisional p.G922 0.951 181 0% 80 16.3% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF99 7652 genome.wustl.edu 37 19 22941762 22941762 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080409.1 -1 provisional p.E226* 0.479 124 0% 78 28.2% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF99 7652 genome.wustl.edu 37 19 22942332 22942332 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080409.1 -1 provisional p.E148K 0.000 540 0.2% 201 19.4% 0 - benign(0.001) tolerated(1) - NULL LOC646864 646864 genome.wustl.edu 37 19 23040729 23040729 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001726885.1 +1 model p.C375R 0.971 56 0% 38 18.4% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF728 388523 genome.wustl.edu 37 19 23158626 23158626 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001726961.1 -1 model p.E505* 1.000 73 0% 24 16.7% 0 - - - - superfamily_C2H2 and C2HC zinc fingers ZNF728 388523 genome.wustl.edu 37 19 23171193 23171193 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001726961.1 -1 model p.D22Y 0.418 787 0.1% 188 18.6% 0 - - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF730 100129543 genome.wustl.edu 37 19 23316977 23316977 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001719792.2 +1 model p.M75I 0.117 316 0.3% 490 19.4% 2 0% benign(0.364) deleterious(0.05) neutral(0.461) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF91 7644 genome.wustl.edu 37 19 23556599 23556599 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003430.2 -1 validated p.E66 0.024 559 0% 668 21.6% 2 50% - - - HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF726 730087 genome.wustl.edu 37 19 24116299 24116299 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000322487 +1 known p.A461S 0.934 120 0% 125 13.6% 0 - benign(0.278) tolerated(0.07) neutral(0.349) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CCNE1 898 genome.wustl.edu 37 19 30303684 30303684 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001238.1 +1 reviewed e2+1 1.000 65 0% 85 21.2% 2 100% - - - - CCNE1 898 genome.wustl.edu 37 19 30313163 30313163 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001238.1 +1 reviewed p.V286A 0.998 1106 0% 644 21.9% 20 45% benign(0.368) tolerated(0.06) neutral(0.440) HMMPfam_Cyclin_C ZNF536 9745 genome.wustl.edu 37 19 30935718 30935718 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014717.1 +1 provisional p.G417S 0.951 30 0% 41 22% 0 - benign(0.002) tolerated(0.98) - NULL ZNF536 9745 genome.wustl.edu 37 19 31039027 31039027 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014717.1 +1 provisional p.R834M 1.000 76 0% 70 22.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF536 9745 genome.wustl.edu 37 19 31039273 31039273 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014717.1 +1 provisional p.G916V 1.000 197 0% 96 14.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TSHZ3 57616 genome.wustl.edu 37 19 31767944 31767944 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020856.2 -1 validated p.E919* 1.000 97 0% 60 10% 1 0% - - - HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like TSHZ3 57616 genome.wustl.edu 37 19 31768155 31768155 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020856.2 -1 validated p.S848 0.995 329 0% 172 17.4% 6 16.6% - - - NULL ZNF507 22847 genome.wustl.edu 37 19 32843863 32843863 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136156.1 +1 validated p.P43S 1.000 268 0% 231 25.1% 0 - benign(0.195) tolerated(0.51) neutral(0.027) NULL ZNF507 22847 genome.wustl.edu 37 19 32845207 32845207 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136156.1 +1 validated p.R491* 0.261 177 0% 166 27.7% 1 0% - - - NULL ANKRD27 84079 genome.wustl.edu 37 19 33134100 33134100 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032139.2 -1 validated p.A237 0.147 476 0% 352 21.9% 3 100% - - - superfamily_SSF109993 SLC7A9 11136 genome.wustl.edu 37 19 33355104 33355104 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001126335.1 -1 reviewed p.A126T 1.000 148 0% 133 23.3% 0 - possibly_damaging(0.943) tolerated(0.08) deleterious(0.688) HMMPfam_AA_permease RHPN2 85415 genome.wustl.edu 37 19 33487108 33487108 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033103.4 -1 reviewed p.R415I 0.031 47 0% 40 45% 48 33.3% possibly_damaging(0.92) deleterious(0.05) deleterious(0.716) HMMPfam_BRO1 GPATCH1 55094 genome.wustl.edu 37 19 33597726 33597726 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018025.2 +1 provisional p.T402 0.000 223 0% 92 18.5% 7 28.5% - - - NULL LRP3 4037 genome.wustl.edu 37 19 33693776 33693776 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002333.3 +1 validated p.E48 1.000 33 0% 48 27.1% 23 43.4% - - - HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB SLC7A10 56301 genome.wustl.edu 37 19 33699846 33699846 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019849.2 -1 validated p.C508Y 0.510 49 0% 89 23.6% 1 100% benign(0.013) tolerated(0.86) neutral(0.001) NULL SLC7A10 56301 genome.wustl.edu 37 19 33703789 33703789 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019849.2 -1 validated p.T159I 0.001 204 0% 170 24.1% 0 - benign(0) tolerated(0.23) neutral(0.042) HMMPfam_AA_permease PEPD 5184 genome.wustl.edu 37 19 33892709 33892709 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000285.3 -1 reviewed p.N295 0.944 106 0% 125 23.2% 118 34.7% - - - HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core PEPD 5184 genome.wustl.edu 37 19 34002004 34002004 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000285.3 -1 reviewed p.D87N 0.660 71 0% 87 29.9% 70 47.1% benign(0.001) tolerated(0.06) neutral(0.323) HMMPfam_AMP_N,superfamily_SSF53092 GPI 2821 genome.wustl.edu 37 19 34859608 34859608 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000175.3 +1 reviewed e4+1 1.000 184 0% 206 30.1% 2 100% - - - - UBA2 10054 genome.wustl.edu 37 19 34934787 34934787 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005499.2 +1 validated p.S207Y 0.998 352 0% 211 18.5% 66 40.9% probably_damaging(1) tolerated(0.19) deleterious(0.549) superfamily_MoeB UBA2 10054 genome.wustl.edu 37 19 34951416 34951416 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005499.2 +1 validated p.Q481H 1.000 234 0% 153 20.3% 93 36.5% possibly_damaging(0.912) tolerated(0.16) neutral(0.423) superfamily_MoeB UBA2 10054 genome.wustl.edu 37 19 34957815 34957815 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005499.2 +1 validated p.V546G 1.000 150 0% 89 16.9% 106 52.8% benign(0.37) deleterious(0) deleterious(0.562) NULL ZNF599 148103 genome.wustl.edu 37 19 35251127 35251127 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007248.2 -1 validated p.D193 0.001 337 0% 164 20.1% 0 - - - - superfamily_C2H2 and C2HC zinc fingers ZNF599 148103 genome.wustl.edu 37 19 35251339 35251339 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007248.2 -1 validated p.D123Y 0.188 174 0% 79 21.5% 0 - benign(0) deleterious(0.01) neutral(0.406) NULL ZNF30 90075 genome.wustl.edu 37 19 35435319 35435319 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099437.1 +1 validated p.P484 0.292 314 0% 140 15% 5 20% - - - superfamily_C2H2 and C2HC zinc fingers ZNF30 90075 genome.wustl.edu 37 19 35435645 35435645 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099437.1 +1 validated p.G593D 0.992 215 0% 111 18.9% 6 50% benign(0.241) deleterious(0) deleterious(0.469) superfamily_C2H2 and C2HC zinc fingers ZNF792 126375 genome.wustl.edu 37 19 35448944 35448944 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175872.4 -1 validated p.S605R 0.627 282 0% 203 25.1% 8 37.5% possibly_damaging(0.721) tolerated(0.15) deleterious(0.502) NULL ZNF792 126375 genome.wustl.edu 37 19 35449497 35449497 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175872.4 -1 validated p.P421L 0.996 243 0% 188 23.4% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_C2H2 and C2HC zinc fingers ZNF792 126375 genome.wustl.edu 37 19 35450152 35450152 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175872.4 -1 validated p.D203N 0.001 125 0% 91 16.5% 1 0% possibly_damaging(0.617) deleterious(0.02) deleterious(0.598) NULL SCN1B 6324 genome.wustl.edu 37 19 35530095 35530095 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037.4 +1 reviewed p.V175M 0.952 69 0% 111 19.8% 6 0% possibly_damaging(0.901) deleterious(0.04) deleterious(0.706) NULL HPN 3249 genome.wustl.edu 37 19 35550787 35550787 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002151.2 +1 reviewed p.T100 0.983 28 0% 25 16% 83 38.5% - - - HMMPfam_Hepsin-SRCR,superfamily_Srcr_receptor LSR 51599 genome.wustl.edu 37 19 35757312 35757312 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_205834.2 +1 validated p.P325S 0.998 144 0% 173 24.9% 295 51.1% probably_damaging(0.974) deleterious(0.01) deleterious(0.822) NULL USF2 7392 genome.wustl.edu 37 19 35761709 35761709 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003367.2 +1 reviewed e6+1 1.000 165 0.6% 190 23.7% 29 96.5% - - - - CD22 933 genome.wustl.edu 37 19 35827176 35827176 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001771.3 +1 validated p.V217A 0.568 162 0% 132 21.2% 1 0% possibly_damaging(0.623) deleterious(0.03) deleterious(0.582) HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin CD22 933 genome.wustl.edu 37 19 35828871 35828871 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001771.3 +1 validated p.V311A 0.002 145 0% 77 36.4% 2 0% benign(0.012) tolerated(1) neutral(0.001) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin CD22 933 genome.wustl.edu 37 19 35837067 35837067 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001771.3 +1 validated p.S781A 0.000 137 0% 148 25% 5 0% benign(0.149) - - NULL FFAR3 2865 genome.wustl.edu 37 19 35850246 35850246 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005304.3 +1 validated p.V152I 0.000 292 0% 234 11.1% 0 - benign(0) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 FFAR3 2865 genome.wustl.edu 37 19 35863263 35863263 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000246538 +1 known p.G334 0.005 255 0% 157 13.4% 1 0% - - - NULL KRTDAP 388533 genome.wustl.edu 37 19 35979354 35979354 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207392.1 -1 provisional p.A68T 0.963 54 0% 38 18.4% 0 - possibly_damaging(0.915) tolerated(0.21) neutral(0.410) NULL GAPDHS 26330 genome.wustl.edu 37 19 36027807 36027807 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014364.4 +1 reviewed p.P54S 0.001 348 0% 394 20.3% 0 - benign(0.051) deleterious(0.03) neutral(0.367) NULL ATP4A 495 genome.wustl.edu 37 19 36042363 36042363 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000704.2 -1 reviewed p.Q957 1.000 132 0% 131 25.2% 0 - - - - HMMPfam_Cation_ATPase_C,superfamily_SSF81665 ATP4A 495 genome.wustl.edu 37 19 36050775 36050775 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000704.2 -1 reviewed p.R330W 1.000 42 0% 41 29.3% 0 - possibly_damaging(0.931) deleterious(0) deleterious(0.822) HMMPfam_E1-E2_ATPase,superfamily_SSF81665 HAUS5 23354 genome.wustl.edu 37 19 36109810 36109810 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015302.1 +1 validated p.L346 0.006 105 0% 93 22.6% 18 44.4% - - - NULL MLL4 9757 genome.wustl.edu 37 19 36211520 36211520 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.P424H 1.000 56 0% 70 27.1% 1 100% unknown(0) deleterious(0) - NULL MLL4 9757 genome.wustl.edu 37 19 36212061 36212061 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.L604 0.997 114 0% 122 27% 3 66.6% - - - NULL MLL4 9757 genome.wustl.edu 37 19 36216638 36216638 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.C1268 1.000 70 0% 79 21.5% 16 31.2% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD MLL4 9757 genome.wustl.edu 37 19 36218102 36218102 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.Y1350C 0.997 153 0% 149 19.5% 10 70% probably_damaging(0.965) - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD MLL4 9757 genome.wustl.edu 37 19 36221739 36221739 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.T1803I 1.000 86 0% 82 22% 20 45% possibly_damaging(0.85) - - NULL MLL4 9757 genome.wustl.edu 37 19 36223121 36223121 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.P1891T 1.000 53 0% 53 24.5% 19 21% probably_damaging(0.98) - - NULL MLL4 9757 genome.wustl.edu 37 19 36229206 36229206 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.R2632 0.914 169 0% 127 26.8% 80 31.2% - - - HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain MLL4 9757 genome.wustl.edu 37 19 36229330 36229330 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014727.1 +1 reviewed p.I2674V 1.000 156 0% 148 12.8% 56 16% benign(0.023) - - HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain ENSG00000247203 0 genome.wustl.edu 37 19 36243329 36243329 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000501632 -1 novel NULL 0.000 352 0% 437 20.8% 0 - - - - - C19orf55 148137 genome.wustl.edu 37 19 36257685 36257685 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039887.1 +1 predicted p.A262 0.021 107 0% 118 23.7% 4 25% - - - NULL ARHGAP33 115703 genome.wustl.edu 37 19 36268503 36268503 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000221905 +1 known p.L6R 0.003 69 0% 71 21.1% 0 - possibly_damaging(0.88) deleterious(0.03) deleterious(0.708) NULL ARHGAP33 115703 genome.wustl.edu 37 19 36268516 36268516 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000221905 +1 known p.L10 0.992 81 0% 82 25.6% 0 - - - - NULL ARHGAP33 115703 genome.wustl.edu 37 19 36275990 36275990 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052948.3 +1 reviewed p.P568L 0.013 22 0% 15 40% 4 0% possibly_damaging(0.922) deleterious(0.01) deleterious(0.777) NULL NPHS1 4868 genome.wustl.edu 37 19 36317494 36317494 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004646.3 -1 reviewed p.I1216 0.999 190 0% 115 20% 0 - - - - NULL NPHS1 4868 genome.wustl.edu 37 19 36322394 36322394 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004646.3 -1 reviewed p.E1099* 0.990 96 0% 64 25% 1 0% - - - NULL NPHS1 4868 genome.wustl.edu 37 19 36340227 36340227 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004646.3 -1 reviewed p.D251N 0.316 26 0% 38 18.4% 0 - benign(0) tolerated(0.35) neutral(0.021) HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin KIRREL2 84063 genome.wustl.edu 37 19 36357261 36357261 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199180.2 +1 validated p.P665H 1.000 347 0% 397 15.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL APLP1 333 genome.wustl.edu 37 19 36368659 36368659 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024807.1 +1 reviewed p.L495S 0.899 257 0% 285 22.5% 6 16.6% probably_damaging(1) tolerated(0.45) deleterious(0.512) NULL NFKBID 84807 genome.wustl.edu 37 19 36381486 36381486 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340950 -1 known p.P37 0.000 39 0% 34 35.3% 2 50% - - - NULL NFKBID 84807 genome.wustl.edu 37 19 36386992 36386992 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139239.1 -1 provisional p.V166I 0.020 286 0% 225 24% 10 40% benign(0.111) tolerated(0.29) neutral(0.038) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat C19orf46 163183 genome.wustl.edu 37 19 36497843 36497843 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039876.1 -1 validated p.L143I 0.463 34 0% 43 14% 37 27% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL C19orf46 163183 genome.wustl.edu 37 19 36499190 36499190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039876.1 -1 validated p.P70S 0.027 85 1.2% 113 21.2% 23 30.4% benign(0.195) tolerated(0.61) neutral(0.022) NULL WDR62 284403 genome.wustl.edu 37 19 36558757 36558757 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083961.1 +1 validated p.R243C 1.000 105 0% 124 21% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40 repeat-like WDR62 284403 genome.wustl.edu 37 19 36592208 36592208 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083961.1 +1 validated p.S987N 0.752 38 0% 21 28.6% 11 27.2% benign(0.002) tolerated(0.49) neutral(0.011) NULL WDR62 284403 genome.wustl.edu 37 19 36593925 36593925 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083961.1 +1 validated p.G1137 0.000 74 0% 85 11.8% 19 10.5% - - - NULL ZNF565 147929 genome.wustl.edu 37 19 36673984 36673984 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042474.1 -1 validated p.T295N 0.015 190 0% 79 26.6% 3 33.3% possibly_damaging(0.742) deleterious(0.04) deleterious(0.621) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF565 147929 genome.wustl.edu 37 19 36674274 36674274 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042474.1 -1 validated p.K198 0.000 339 0% 151 21.2% 6 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZFP14 57677 genome.wustl.edu 37 19 36831921 36831921 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020917.1 -1 provisional p.Q269 0.222 315 0% 182 26.9% 4 75% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZFP82 284406 genome.wustl.edu 37 19 36884306 36884306 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133466.2 -1 provisional p.C312 0.981 329 0% 271 20.7% 2 0% - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZFP82 284406 genome.wustl.edu 37 19 36884813 36884813 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133466.2 -1 provisional p.M143I 0.000 317 0% 217 23% 1 100% benign(0) tolerated(1) - NULL ZNF566 84924 genome.wustl.edu 37 19 36939960 36939960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145343.1 -1 validated p.E393D 1.000 298 0% 132 28.8% 3 66.6% benign(0.03) tolerated(0.06) neutral(0.324) superfamily_SSF57667 ZNF790 388536 genome.wustl.edu 37 19 37309644 37309644 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206894.2 -1 validated p.Y534 0.015 305 0.3% 153 28.1% 8 37.5% - - - HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF568 374900 genome.wustl.edu 37 19 37441221 37441221 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198539.2 +1 validated p.P389L 0.999 245 0% 107 10.3% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_C2H2 and C2HC zinc fingers ZNF420 147923 genome.wustl.edu 37 19 37618096 37618096 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144689.3 +1 provisional p.S68F 0.209 253 0.4% 80 20% 1 0% benign(0.113) tolerated(0.09) neutral(0.305) NULL ZNF585A 199704 genome.wustl.edu 37 19 37643531 37643531 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152655.2 -1 validated p.H369Y 0.001 355 0% 185 13% 0 - possibly_damaging(0.558) tolerated(0.1) deleterious(0.477) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF585A 199704 genome.wustl.edu 37 19 37646782 37646782 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152655.2 -1 validated p.R38C 0.000 566 0% 310 21.9% 1 0% benign(0.164) tolerated(0.06) neutral(0.338) NULL ZNF585A 199704 genome.wustl.edu 37 19 37660753 37660753 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356958 -1 known p.G20 0.000 79 0% 66 13.6% 20 15% - - - superfamily_KRAB domain (Kruppel-associated box Pfam 01352) HKR1 284459 genome.wustl.edu 37 19 37853509 37853509 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181786.2 +1 provisional p.T271I 0.355 128 0% 75 33.3% 19 63.1% possibly_damaging(0.948) deleterious(0) deleterious(0.836) NULL HKR1 284459 genome.wustl.edu 37 19 37854239 37854239 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181786.2 +1 provisional p.T514 0.049 177 0% 125 13.6% 25 16% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF527 84503 genome.wustl.edu 37 19 37879674 37879674 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032453.1 +1 validated p.P241 0.299 26 0% 19 26.3% 0 - - - - NULL ZNF527 84503 genome.wustl.edu 37 19 37880020 37880020 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032453.1 +1 validated p.P357T 1.000 276 0% 119 26.9% 2 50% probably_damaging(0.999) tolerated(0.17) deleterious(0.549) superfamily_C2H2 and C2HC zinc fingers ZNF569 148266 genome.wustl.edu 37 19 37917256 37917256 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152484.2 -1 validated p.A14T 1.000 342 0% 103 19.4% 2 50% possibly_damaging(0.647) tolerated(0.37) neutral(0.246) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF570 148268 genome.wustl.edu 37 19 37975629 37975629 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144694.1 +1 provisional p.L369I 0.947 318 0% 111 14.4% 4 25% benign(0.143) tolerated(0.35) neutral(0.033) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF571 51276 genome.wustl.edu 37 19 38056227 38056227 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016536.3 -1 validated p.C368Y 1.000 121 0% 73 21.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF540 163255 genome.wustl.edu 37 19 38103529 38103529 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152606.3 +1 validated p.L450I 0.000 252 0% 123 17.1% 1 0% possibly_damaging(0.637) tolerated(0.39) neutral(0.239) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF573 126231 genome.wustl.edu 37 19 38229627 38229627 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152360.3 -1 validated p.G530 0.987 238 0% 132 18.2% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 WDR87 83889 genome.wustl.edu 37 19 38378528 38378528 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031951.3 -1 provisional p.A1889D 0.000 728 0.1% 371 18.6% 0 - probably_damaging(0.977) - - superfamily_WD40 repeat-like,superfamily_ARM repeat WDR87 83889 genome.wustl.edu 37 19 38379386 38379386 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031951.3 -1 provisional p.A1603V 0.000 567 0% 323 27.2% 1 0% probably_damaging(0.988) - - superfamily_WD40 repeat-like,superfamily_ARM repeat SIPA1L3 23094 genome.wustl.edu 37 19 38572736 38572736 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015073.1 +1 validated p.S177 0.997 58 0% 22 31.8% 0 - - - - NULL SPINT2 10653 genome.wustl.edu 37 19 38778554 38778554 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021102.3 +1 reviewed p.A106S 0.047 186 0.5% 135 23% 1080 48.9% possibly_damaging(0.799) tolerated(0.16) neutral(0.360) NULL SPINT2 10653 genome.wustl.edu 37 19 38781203 38781203 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021102.3 +1 reviewed p.L194F 0.311 153 0% 140 21.4% 1039 43.5% possibly_damaging(0.856) tolerated(0.7) neutral(0.333) NULL SPINT2 10653 genome.wustl.edu 37 19 38782601 38782601 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021102.3 +1 reviewed p.S238 0.000 139 0% 112 20.5% 1112 48.2% - - - NULL YIF1B 90522 genome.wustl.edu 37 19 38798088 38798088 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039672.2 -1 validated p.V257I 0.009 102 0% 99 18.2% 145 42% benign(0.037) tolerated(0.73) neutral(0.004) HMMPfam_YIF1 YIF1B 90522 genome.wustl.edu 37 19 38800253 38800253 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039672.2 -1 validated p.P30L 0.986 85 0% 64 21.9% 51 23.5% benign(0.01) deleterious(0.01) neutral(0.406) NULL CATSPERG 57828 genome.wustl.edu 37 19 38855574 38855574 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021185.4 +1 validated p.S840I 0.936 325 0% 314 14.6% 0 - probably_damaging(0.995) tolerated(0.49) neutral(0.468) NULL PSMD8 5714 genome.wustl.edu 37 19 38866844 38866844 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002812.4 +1 reviewed p.K135N 0.978 315 0% 328 20.7% 389 41.1% benign(0.253) tolerated(0.18) neutral(0.082) HMMPfam_SAC3_GANP FAM98C 147965 genome.wustl.edu 37 19 38899499 38899499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174905.3 +1 validated p.R343C 0.230 76 0% 95 13.7% 36 19.4% probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL RASGRP4 115727 genome.wustl.edu 37 19 38901993 38901993 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_170604.2 -1 reviewed p.R570H 1.000 180 0% 186 22.6% 0 - probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain RYR1 6261 genome.wustl.edu 37 19 38951219 38951219 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000540.2 +1 reviewed p.V855 1.000 43 0% 45 28.9% 0 - - - - HMMPfam_RyR RYR1 6261 genome.wustl.edu 37 19 38976711 38976711 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000540.2 +1 reviewed p.A1806T 1.000 18 0% 16 37.5% 0 - benign(0.016) - - NULL RYR1 6261 genome.wustl.edu 37 19 39013898 39013898 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000540.2 +1 reviewed p.E3463D 1.000 192 0% 171 21.6% 0 - probably_damaging(0.992) - - NULL RYR1 6261 genome.wustl.edu 37 19 39016131 39016131 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000540.2 +1 reviewed p.R3539C 1.000 34 0% 32 28.1% 0 - probably_damaging(1) - - NULL RYR1 6261 genome.wustl.edu 37 19 39057625 39057625 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000540.2 +1 reviewed p.A4504 0.004 66 0% 102 28.4% 1 0% - - - HMMPfam_RR_TM4-6 MAP4K1 11184 genome.wustl.edu 37 19 39083961 39083961 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007181.4 -1 validated p.R786K 1.000 398 0% 278 15.5% 53 0% possibly_damaging(0.94) tolerated(0.35) neutral(0.406) HMMPfam_CNH,HMMSmart_CNH MAP4K1 11184 genome.wustl.edu 37 19 39088202 39088202 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007181.4 -1 validated p.L568I 0.998 256 0% 173 10.4% 35 0% possibly_damaging(0.942) tolerated(0.63) neutral(0.391) HMMPfam_CNH,HMMSmart_CNH EIF3K 27335 genome.wustl.edu 37 19 39116667 39116667 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013234.2 +1 validated e4-1 1.000 207 0% 130 23.8% 1 0% - - - - ACTN4 81 genome.wustl.edu 37 19 39207889 39207889 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004924.3 +1 reviewed p.T359M 1.000 164 0% 166 25.9% 343 39% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin ACTN4 81 genome.wustl.edu 37 19 39212264 39212264 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004924.3 +1 reviewed p.E460K 1.000 99 0% 112 26.8% 340 37.9% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin ACTN4 81 genome.wustl.edu 37 19 39214889 39214889 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004924.3 +1 reviewed p.Q595 1.000 72 0% 75 24% 361 42.6% - - - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin ACTN4 81 genome.wustl.edu 37 19 39215182 39215182 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004924.3 +1 reviewed p.P663S 1.000 51 0% 45 24.4% 261 40.2% unknown(0) tolerated(0.08) - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin CAPN12 147968 genome.wustl.edu 37 19 39232421 39232421 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144691.3 -1 validated p.A186T 1.000 133 0% 174 19% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001 SIRT2 22933 genome.wustl.edu 37 19 39369944 39369944 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012237.2 -1 reviewed p.L341M 1.000 118 0% 89 23.6% 79 51.8% probably_damaging(0.994) tolerated(0.08) deleterious(0.752) superfamily_DHS-like NAD/FAD-binding domain SIRT2 22933 genome.wustl.edu 37 19 39374341 39374341 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012237.2 -1 reviewed p.A186V 1.000 93 0% 107 20.6% 60 38.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain NFKBIB 4793 genome.wustl.edu 37 19 39395889 39395889 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002503.3 +1 validated p.E111 0.999 34 0% 31 19.4% 43 44.1% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat NFKBIB 4793 genome.wustl.edu 37 19 39395910 39395910 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002503.3 +1 validated p.A118 0.003 27 0% 19 31.6% 30 46.6% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat SARS2 54938 genome.wustl.edu 37 19 39406322 39406322 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017827.3 -1 reviewed p.T494I 0.043 62 0% 76 23.7% 53 28.3% possibly_damaging(0.806) deleterious(0.02) deleterious(0.686) superfamily_SSF55681 NCCRP1 342897 genome.wustl.edu 37 19 39688694 39688694 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001414.1 +1 provisional p.G113 1.000 143 0% 156 15.4% 0 - - - - HMMPfam_FBA,superfamily_Gal_bind_like IL29 282618 genome.wustl.edu 37 19 39787085 39787085 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172140.1 +1 reviewed p.V8 0.011 152 0% 106 14.2% 1 0% - - - NULL SAMD4B 55095 genome.wustl.edu 37 19 39869158 39869158 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018028.2 +1 provisional p.L487M 1.000 256 0% 204 20.6% 36 33.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PLEKHG2 64857 genome.wustl.edu 37 19 39915404 39915404 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022835.2 +1 validated p.A1211T 0.018 130 0% 156 25.6% 36 38.8% possibly_damaging(0.913) deleterious(0) deleterious(0.809) NULL SUPT5H 6829 genome.wustl.edu 37 19 39949672 39949672 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111020.2 +1 validated p.E139D 1.000 188 0% 93 22.6% 48 45.8% benign(0.006) tolerated(0.18) neutral(0.056) HMMPfam_Supt5 TIMM50 92609 genome.wustl.edu 37 19 39979213 39979213 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001563.1 +1 validated p.T399 0.000 83 0% 98 17.3% 218 41.7% - - - HMMPfam_NIF,superfamily_SSF56784 LOC400696 400696 genome.wustl.edu 37 19 40172707 40172707 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207646.2 +1 validated p.F54 0.000 296 0% 72 25% 15 26.6% - - - HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases LGALS14 56891 genome.wustl.edu 37 19 40199918 40199918 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203471.1 +1 reviewed p.D158Y 0.085 276 0% 57 26.3% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl LEUTX 342900 genome.wustl.edu 37 19 40276669 40276669 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143832.1 +1 provisional p.E134A 0.003 266 0% 126 25.4% 0 - benign(0.224) - - NULL DYRK1B 9149 genome.wustl.edu 37 19 40316545 40316545 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004714.1 -1 reviewed p.S567N 1.000 9 0.000 10 0.400 84 27.3% unknown(0) deleterious(0) - NULL FCGBP 8857 genome.wustl.edu 37 19 40366422 40366422 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003890.2 -1 validated p.A4604 0.019 19 0% 17 41.2% 7 14.2% - - - HMMPfam_VWD,HMMSmart_VWD FCGBP 8857 genome.wustl.edu 37 19 40382725 40382725 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003890.2 -1 validated p.S3387 0.016 70 0% 44 25% 4 0% - - - HMMPfam_VWD,HMMSmart_VWD FCGBP 8857 genome.wustl.edu 37 19 40402217 40402217 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003890.2 -1 validated p.A1728T 0.000 458 0% 513 8.4% 6 0% unknown(0) tolerated(0.26) - HMMPfam_VWD,HMMSmart_VWD FCGBP 8857 genome.wustl.edu 37 19 40412104 40412104 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003890.2 -1 validated p.G1175D 1.000 32 0% 29 24.1% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) superfamily_Cysrich_TIL,HMMPfam_TIL FCGBP 8857 genome.wustl.edu 37 19 40433178 40433178 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003890.2 -1 validated p.T364M 0.005 115 0% 119 30.3% 2 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL PSMC4 5704 genome.wustl.edu 37 19 40478338 40478338 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006503.2 +1 reviewed p.K66N 1.000 250 0% 170 17.6% 151 44.3% benign(0.058) deleterious(0) neutral(0.448) NULL PSMC4 5704 genome.wustl.edu 37 19 40480305 40480305 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006503.2 +1 reviewed p.L143 1.000 33 0% 30 30% 270 47.7% - - - NULL ZNF780B 163131 genome.wustl.edu 37 19 40540728 40540728 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005851.2 -1 validated p.R680C 0.003 296 0% 108 15.7% 6 100% probably_damaging(0.999) tolerated(0.18) deleterious(0.546) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF780B 163131 genome.wustl.edu 37 19 40541115 40541115 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005851.2 -1 validated p.H551N 0.370 272 0.4% 112 21.4% 3 33.3% probably_damaging(0.973) deleterious(0) deleterious(0.859) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF780B 163131 genome.wustl.edu 37 19 40541792 40541792 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005851.2 -1 validated p.R325Q 0.000 540 0.2% 191 24.1% 2 50% possibly_damaging(0.534) tolerated(0.53) neutral(0.188) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF780A 284323 genome.wustl.edu 37 19 40581261 40581261 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142577.1 -1 validated p.C364Y 0.759 402 0% 182 21.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF780A 284323 genome.wustl.edu 37 19 40581327 40581327 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142577.1 -1 validated p.A342V 0.539 381 0% 166 22.3% 1 0% benign(0.253) tolerated(0.07) neutral(0.345) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF780A 284323 genome.wustl.edu 37 19 40582091 40582091 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142577.1 -1 validated p.E87D 0.003 255 0% 109 24.8% 8 12.5% benign(0.003) deleterious(0.04) neutral(0.349) NULL MAP3K10 4294 genome.wustl.edu 37 19 40698469 40698469 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002446.3 +1 reviewed p.A177 1.000 46 0% 53 22.6% 6 66.6% - - - superfamily_Kinase_like,HMMPfam_Pkinase LOC100289661 100289661 genome.wustl.edu 37 19 40710446 40710446 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343682.1 -1 model p.D528N 1.000 38 0% 49 16.3% 14 14.2% - - - NULL TTC9B 148014 genome.wustl.edu 37 19 40722126 40722126 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152479.5 -1 validated p.S222R 0.999 153 0% 220 22.3% 1 100% benign(0.303) deleterious(0.03) neutral(0.459) NULL C19orf47 126526 genome.wustl.edu 37 19 40829984 40829984 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178830.2 -1 predicted e6-1 1.000 160 0% 181 24.9% 0 - - - - - PLD3 23646 genome.wustl.edu 37 19 40872731 40872731 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031696.2 +1 validated p.A52S 1.000 67 0% 80 20% 254 27.1% benign(0.008) tolerated(0.3) neutral(0.029) NULL HIPK4 147746 genome.wustl.edu 37 19 40885539 40885539 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144685.3 -1 provisional p.P602 0.955 96 0% 62 30.6% 0 - - - - NULL HIPK4 147746 genome.wustl.edu 37 19 40886336 40886336 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144685.3 -1 provisional p.S521N 0.263 58 0% 59 18.6% 0 - benign(0.002) deleterious(0) neutral(0.445) NULL HIPK4 147746 genome.wustl.edu 37 19 40889978 40889978 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144685.3 -1 provisional p.S178 0.000 88 0% 81 17.3% 1 0% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PRX 57716 genome.wustl.edu 37 19 40900185 40900185 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181882.2 -1 reviewed p.E1358D 0.010 25 0% 31 19.4% 3 33.3% benign(0.001) tolerated(0.62) neutral(0.004) NULL PRX 57716 genome.wustl.edu 37 19 40902925 40902925 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181882.2 -1 reviewed p.P445H 0.956 54 0% 52 28.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SPTBN4 57731 genome.wustl.edu 37 19 41034975 41034975 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020971.2 +1 reviewed p.Q1295H 0.988 179 0% 219 20.1% 0 - possibly_damaging(0.598) tolerated(0.12) neutral(0.468) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat LTBP4 8425 genome.wustl.edu 37 19 41119864 41119864 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000308370 +1 known p.I934S 0.128 33 0% 40 32.5% 13 7.6% possibly_damaging(0.58) tolerated(0.56) neutral(0.206) HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196 LTBP4 8425 genome.wustl.edu 37 19 41133041 41133041 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000308370 +1 known p.D1449N 0.986 73 0% 90 23.3% 30 20% possibly_damaging(0.596) tolerated(0.48) neutral(0.216) NULL RAB4B 53916 genome.wustl.edu 37 19 41292616 41292616 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378307 +1 known p.G108R 0.960 99 0% 73 32.9% 68 23.5% unknown(0) - - NULL EGLN2 112398 genome.wustl.edu 37 19 41312545 41312545 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053046.2 +1 reviewed p.C310Y 1.000 193 0% 159 27.7% 130 36.9% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702 CYP2A7 1549 genome.wustl.edu 37 19 41383838 41383838 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000764.2 -1 reviewed p.L298I 0.968 232 0% 218 20.6% 0 - benign(0.186) tolerated(0.07) neutral(0.337) HMMPfam_p450,superfamily_Cytochrome_P450 ENSG00000198251 0 genome.wustl.edu 37 19 41415891 41415891 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000359667 -1 known p.I81 1.000 222 0% 207 18.8% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 CYP2A7P1 1550 genome.wustl.edu 37 19 41531612 41531612 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000301171 -1 known p.S181 1.000 387 0% 310 18.7% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 CYP2A13 1553 genome.wustl.edu 37 19 41596349 41596349 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000766.3 +1 reviewed p.V178 0.995 618 0.2% 398 23.9% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 TGFB1 7040 genome.wustl.edu 37 19 41858702 41858702 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000660.4 -1 reviewed p.S83I 1.000 20 0% 18 38.9% 22 27.2% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_TGFb_propeptide BCKDHA 593 genome.wustl.edu 37 19 41916596 41916596 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000709.3 +1 reviewed p.P55T 1.000 120 0% 105 11.4% 76 18.4% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) NULL BCKDHA 593 genome.wustl.edu 37 19 41928579 41928579 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000709.3 +1 reviewed p.G300D 1.000 113 0% 101 21.8% 102 39.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_E1_dh,superfamily_SSF52518 BCKDHA 593 genome.wustl.edu 37 19 41928623 41928623 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000709.3 +1 reviewed p.R315W 1.000 63 0% 64 15.6% 113 48.6% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_E1_dh,superfamily_SSF52518 BCKDHA 593 genome.wustl.edu 37 19 41928898 41928898 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000457836 +1 known p.C334R 0.000 97 0% 75 10.7% 0 - unknown(0) - - HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding) ENSG00000229113 0 genome.wustl.edu 37 19 42027819 42027819 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439847 -1 known p.T155 0.390 284 0% 388 24% 0 - - - - NULL DMRTC2 63946 genome.wustl.edu 37 19 42351835 42351835 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001040283.1 +1 validated p.A86T 1.000 54 0% 51 15.7% 0 - probably_damaging(0.955) deleterious(0) deleterious(0.843) HMMSmart_SM00301 ARHGEF1 9138 genome.wustl.edu 37 19 42396804 42396804 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199002.1 +1 reviewed p.T181 0.988 29 0% 23 21.7% 35 5.7% - - - HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam ARHGEF1 9138 genome.wustl.edu 37 19 42402664 42402664 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199002.1 +1 reviewed p.R414W 1.000 34 0% 53 20.8% 60 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_DH-domain ARHGEF1 9138 genome.wustl.edu 37 19 42406174 42406174 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199002.1 +1 reviewed p.E484K 1.000 137 0% 159 21.4% 85 20% probably_damaging(0.995) deleterious(0.03) deleterious(0.822) HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain ATP1A3 478 genome.wustl.edu 37 19 42482174 42482174 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152296.3 -1 reviewed p.K619N 1.000 256 0% 204 24.5% 3 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81665 GRIK5 2901 genome.wustl.edu 37 19 42507560 42507560 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002088.3 -1 reviewed p.C813Y 1.000 190 0% 203 23.6% 3 0% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) HMMPfam_Lig_chan GRIK5 2901 genome.wustl.edu 37 19 42557996 42557996 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002088.3 -1 reviewed p.S381Y 1.000 157 0% 119 26.1% 4 0% possibly_damaging(0.491) deleterious(0.01) deleterious(0.569) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I GRIK5 2901 genome.wustl.edu 37 19 42563516 42563516 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002088.3 -1 reviewed p.H224 1.000 441 0% 286 23.4% 1 0% - - - HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I POU2F2 5452 genome.wustl.edu 37 19 42600325 42600325 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002698.2 -1 validated p.P175L 0.998 117 0% 76 14.5% 3 0% benign(0.382) deleterious(0) deleterious(0.567) NULL POU2F2 5452 genome.wustl.edu 37 19 42603913 42603913 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002698.2 -1 validated p.P122S 1.000 166 0% 115 16.5% 1 0% benign(0.003) tolerated(0.5) neutral(0.010) NULL POU2F2 5452 genome.wustl.edu 37 19 42626317 42626317 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002698.2 -1 validated p.T49 1.000 278 0% 278 10.8% 0 - - - - NULL ZNF526 116115 genome.wustl.edu 37 19 42729154 42729154 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133444.1 +1 provisional p.P200H 1.000 180 0% 211 23.7% 12 41.6% probably_damaging(0.999) tolerated(0.12) deleterious(0.751) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF526 116115 genome.wustl.edu 37 19 42730017 42730017 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133444.1 +1 provisional p.R488C 1.000 36 0% 62 11.3% 12 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers GSK3A 2931 genome.wustl.edu 37 19 42744142 42744142 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019884.2 -1 validated p.A146T 1.000 264 0% 350 12.6% 72 27.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase CIC 23152 genome.wustl.edu 37 19 42791056 42791056 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015125.3 +1 validated p.A67 1.000 46 2.2% 64 18.8% 9 55.5% - - - NULL CIC 23152 genome.wustl.edu 37 19 42791585 42791585 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015125.3 +1 validated p.G189E 1.000 112 0% 168 19% 15 60% probably_damaging(0.996) tolerated(0.49) deleterious(0.472) superfamily_HMG-box CIC 23152 genome.wustl.edu 37 19 42793230 42793230 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015125.3 +1 validated p.Q374H 1.000 21 0% 30 16.7% 14 35.7% possibly_damaging(0.519) deleterious(0.03) deleterious(0.539) NULL PRR19 284338 genome.wustl.edu 37 19 42813940 42813940 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199285.2 +1 validated p.R68 0.998 63 0% 68 13.2% 7 14.2% - - - NULL PRR19 284338 genome.wustl.edu 37 19 42814476 42814476 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199285.2 +1 validated p.P219T 0.001 174 0% 136 19.1% 3 100% benign(0.092) deleterious(0) neutral(0.452) NULL MEGF8 1954 genome.wustl.edu 37 19 42830410 42830410 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001410.2 +1 validated p.K5N 0.188 59 0% 53 17% 0 - unknown(0) - - NULL MEGF8 1954 genome.wustl.edu 37 19 42852466 42852466 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000251268 +1 known p.A714T 0.986 165 0% 175 20.6% 2 0% benign(0) tolerated(0.53) neutral(0.007) NULL MEGF8 1954 genome.wustl.edu 37 19 42855830 42855830 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001410.2 +1 validated p.C939 0.002 33 3% 41 22% 4 0% - - - HMMPfam_PSI,HMMSmart_PSI MEGF8 1954 genome.wustl.edu 37 19 42857079 42857079 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001410.2 +1 validated e19-1 1.000 48 0% 63 23.8% 0 - - - - - MEGF8 1954 genome.wustl.edu 37 19 42860493 42860493 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001410.2 +1 validated p.A1437T 1.000 77 0% 71 22.5% 2 50% probably_damaging(0.998) tolerated(0.34) deleterious(0.497) NULL CEACAM8 1088 genome.wustl.edu 37 19 43093807 43093807 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001816.3 -1 validated p.P169S 0.007 433 0.5% 217 18% 0 - benign(0.074) tolerated(0.32) neutral(0.029) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin TEX101 83639 genome.wustl.edu 37 19 43920136 43920136 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031451.4 +1 validated e2+1 0.323 261 0% 205 27.8% 0 - - - - - SRRM5 100170229 genome.wustl.edu 37 19 44118031 44118031 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145641.1 +1 validated p.S586R 0.000 368 0.3% 359 27.9% 1 100% possibly_damaging(0.923) tolerated(0.46) neutral(0.385) NULL CADM4 199731 genome.wustl.edu 37 19 44130357 44130357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145296.1 -1 validated p.G195C 0.982 167 0% 174 14.9% 36 19.4% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726 PLAUR 5329 genome.wustl.edu 37 19 44160710 44160710 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002659.2 -1 reviewed p.R131 0.875 196 0% 104 22.1% 114 38.5% - - - HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like PLAUR 5329 genome.wustl.edu 37 19 44160752 44160752 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002659.2 -1 reviewed p.C117 0.003 186 0% 123 16.3% 110 34.5% - - - HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like PLAUR 5329 genome.wustl.edu 37 19 44169526 44169526 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002659.2 -1 reviewed p.K84N 0.756 241 0.4% 148 12.8% 123 26% benign(0.111) tolerated(0.11) neutral(0.280) HMMPfam_UPAR_LY6,HMMSmart_SM00134,superfamily_Snake toxin-like SMG9 56006 genome.wustl.edu 37 19 44251960 44251960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019108.2 -1 validated p.E105D 0.983 99 0% 161 18.6% 14 21.4% benign(0.001) tolerated(0.28) neutral(0.032) NULL KCNN4 3783 genome.wustl.edu 37 19 44273618 44273618 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002250.2 -1 reviewed p.R342H 1.000 70 0% 66 19.7% 47 27.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CaMBD,superfamily_Small-conductance potassium channel ZNF283 284349 genome.wustl.edu 37 19 44351529 44351529 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000421176 +1 known e4+1 1.000 167 0% 146 23.3% 3 33.3% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) - ZNF404 342908 genome.wustl.edu 37 19 44377065 44377065 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033719.2 -1 validated p.A434D 0.997 248 0.4% 204 23.5% 0 - possibly_damaging(0.897) deleterious(0.01) deleterious(0.760) superfamily_C2H2 and C2HC zinc fingers ZNF404 342908 genome.wustl.edu 37 19 44377194 44377194 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033719.2 -1 validated p.T391I 0.329 169 0% 96 21.9% 2 0% probably_damaging(0.958) tolerated(0.06) deleterious(0.724) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF222 7673 genome.wustl.edu 37 19 44531573 44531573 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129996.1 +1 validated p.T65A 0.005 468 0% 231 23.8% 0 - benign(0.001) tolerated(0.94) - HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF284 342909 genome.wustl.edu 37 19 44585193 44585193 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037813.2 +1 provisional p.A14V 0.756 1172 0.1% 695 19.7% 2 0% probably_damaging(0.981) tolerated(0.26) neutral(0.460) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box ZNF234 10780 genome.wustl.edu 37 19 44660945 44660945 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144824.1 +1 validated p.P259H 0.747 422 0% 142 27.5% 3 33.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_C2H2 and C2HC zinc fingers ZNF226 7769 genome.wustl.edu 37 19 44680552 44680552 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032372.1 +1 validated p.Q379H 0.001 246 0% 118 18.6% 5 20% probably_damaging(0.999) tolerated(0.3) deleterious(0.519) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF226 7769 genome.wustl.edu 37 19 44680956 44680956 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032372.1 +1 validated p.R514M 0.000 284 0% 138 21.7% 9 44.4% benign(0.092) tolerated(0.26) neutral(0.041) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF227 7770 genome.wustl.edu 37 19 44740280 44740280 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182490.1 +1 provisional p.H566R 1.000 308 0% 153 13.7% 15 40% possibly_damaging(0.947) deleterious(0) deleterious(0.835) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF233 353355 genome.wustl.edu 37 19 44777752 44777752 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181756.1 +1 provisional p.C313 0.000 234 0% 69 15.9% 1 0% - - - NULL ZNF233 353355 genome.wustl.edu 37 19 44778702 44778702 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181756.1 +1 provisional p.S630I 0.029 411 0% 132 19.7% 2 0% possibly_damaging(0.95) deleterious(0.01) deleterious(0.799) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZFP112 7771 genome.wustl.edu 37 19 44831975 44831975 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083335.1 -1 validated p.G785S 0.986 566 0% 156 30.8% 0 - probably_damaging(1) tolerated(0.27) deleterious(0.533) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF285 26974 genome.wustl.edu 37 19 44891430 44891430 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152354.3 -1 validated p.R326K 0.000 304 0% 118 15.3% 0 - possibly_damaging(0.755) tolerated(0.52) neutral(0.287) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF229 7772 genome.wustl.edu 37 19 44933497 44933497 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014518.2 -1 validated p.R487W 1.000 133 0% 67 26.9% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_C2H2 and C2HC zinc fingers CEACAM19 56971 genome.wustl.edu 37 19 45176069 45176069 + Missense_Mutation SNP G G A rs188022827 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020219.3 +1 validated p.R86Q 0.169 140 0% 54 14.8% 2 50% probably_damaging(0.976) tolerated(0.41) neutral(0.433) superfamily_Immunoglobulin CEACAM16 388551 genome.wustl.edu 37 19 45202625 45202625 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039213.2 +1 validated p.L26M 0.060 462 0% 400 26.5% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL BCL3 602 genome.wustl.edu 37 19 45260630 45260630 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000444487 +1 known p.R141C 0.324 14 0% 11 54.5% 96 34.3% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat BCAM 4059 genome.wustl.edu 37 19 45315591 45315591 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005581.3 +1 reviewed p.V126M 0.983 27 0% 40 27.5% 198 40.9% probably_damaging(0.998) tolerated(0.15) deleterious(0.716) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 BCAM 4059 genome.wustl.edu 37 19 45322708 45322708 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005581.3 +1 reviewed p.P527S 1.000 83 0% 68 20.6% 632 48.2% benign(0.136) tolerated(0.89) neutral(0.011) HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726 PVRL2 5819 genome.wustl.edu 37 19 45389193 45389193 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042724.1 +1 reviewed e7-1 1.000 173 0% 201 19.4% 2 50% - - - - PVRL2 5819 genome.wustl.edu 37 19 45391390 45391390 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042724.1 +1 reviewed p.L457 1.000 119 0% 72 22.2% 84 52.3% - - - NULL CLPTM1 1209 genome.wustl.edu 37 19 45490627 45490627 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001294.1 +1 provisional p.N328 1.000 130 0% 80 12.5% 129 38.7% - - - HMMPfam_CLPTM1 RELB 5971 genome.wustl.edu 37 19 45525373 45525373 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006509.2 +1 validated p.W189* 1.000 34 0% 52 9.6% 27 0% - - - superfamily_P53_like_DNA_bnd,HMMPfam_RHD RELB 5971 genome.wustl.edu 37 19 45535834 45535834 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006509.2 +1 validated p.R345Q 1.000 73 0% 80 22.5% 68 29.4% possibly_damaging(0.842) tolerated(0.24) neutral(0.359) HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set CLASRP 11129 genome.wustl.edu 37 19 45572330 45572330 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007056.2 +1 validated p.A592V 1.000 227 0% 220 15.9% 49 28.5% probably_damaging(0.996) tolerated(0.1) deleterious(0.748) NULL CLASRP 11129 genome.wustl.edu 37 19 45573358 45573358 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007056.2 +1 validated p.R651 0.103 74 0% 91 19.8% 38 7.8% - - - NULL ZNF296 162979 genome.wustl.edu 37 19 45575821 45575821 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145288.1 -1 provisional p.A156S 0.000 54 0% 75 12% 7 14.2% benign(0.02) deleterious(0.05) neutral(0.346) NULL MARK4 57787 genome.wustl.edu 37 19 45781813 45781813 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031417.2 +1 provisional p.G316C 0.982 235 0% 224 22.3% 30 36.6% possibly_damaging(0.945) tolerated(0.06) deleterious(0.712) NULL PPP1R13L 10848 genome.wustl.edu 37 19 45895347 45895347 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142502.1 -1 validated p.P536S 0.987 44 0% 43 27.9% 23 34.7% unknown(0) tolerated(0.21) - NULL ERCC1 2067 genome.wustl.edu 37 19 45920144 45920144 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_202001.2 -1 reviewed p.Q179H 1.000 117 0% 116 24.1% 95 37.8% benign(0) tolerated(0.52) neutral(0.009) NULL ERCC1 2067 genome.wustl.edu 37 19 45923657 45923657 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_202001.2 -1 reviewed p.R117H 0.999 94 0% 105 14.3% 109 13.7% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_Rad10 EML2 24139 genome.wustl.edu 37 19 46129985 46129985 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012155.1 -1 provisional p.S240N 1.000 189 0% 170 22.9% 18 27.7% benign(0.024) tolerated(0.27) neutral(0.035) HMMSmart_WD40,superfamily_WD40_like SNRPD2 6633 genome.wustl.edu 37 19 46191768 46191768 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004597.5 -1 reviewed p.E20G 1.000 530 0% 511 23.3% 816 43.5% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL QPCTL 54814 genome.wustl.edu 37 19 46205166 46205166 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017659.3 +1 validated p.R333C 0.994 64 0% 63 23.8% 61 39.3% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Peptidase_M28,superfamily_SSF53187 SIX5 147912 genome.wustl.edu 37 19 46268794 46268794 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175875.4 -1 reviewed p.Q729K 1.000 38 0% 53 11.3% 30 3.3% possibly_damaging(0.763) deleterious(0) deleterious(0.728) NULL SYMPK 8189 genome.wustl.edu 37 19 46329613 46329613 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004819.2 -1 reviewed p.L734M 0.996 231 0% 218 20.6% 92 46.7% possibly_damaging(0.512) tolerated(0.1) neutral(0.458) superfamily_ARM repeat SYMPK 8189 genome.wustl.edu 37 19 46332268 46332268 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004819.2 -1 reviewed p.L649M 1.000 53 0% 59 30.5% 75 40% benign(0.391) tolerated(0.11) neutral(0.397) superfamily_ARM repeat SYMPK 8189 genome.wustl.edu 37 19 46345544 46345544 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004819.2 -1 reviewed p.D351N 0.987 69 0% 61 13.1% 39 2.5% benign(0.133) tolerated(0.51) neutral(0.020) superfamily_ARM repeat SYMPK 8189 genome.wustl.edu 37 19 46345660 46345660 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004819.2 -1 reviewed p.P312L 1.000 69 0% 73 30.1% 50 32% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ARM repeat SYMPK 8189 genome.wustl.edu 37 19 46357676 46357676 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004819.2 -1 reviewed p.G26 0.998 138 0% 114 23.7% 37 35.1% - - - superfamily_ARM repeat IRF2BP1 26145 genome.wustl.edu 37 19 46388052 46388052 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015649.1 -1 provisional p.W327* 1.000 17 0% 19 36.8% 32 31.2% - - - NULL PGLYRP1 8993 genome.wustl.edu 37 19 46522896 46522896 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005091.2 -1 validated p.I99 0.947 82 0% 100 21% 0 - - - - HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP HIF3A 64344 genome.wustl.edu 37 19 46812612 46812612 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152795.2 +1 reviewed p.D256N 1.000 18 0% 30 26.7% 0 - benign(0.398) tolerated(0.11) neutral(0.400) HMMSmart_SM00091,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain) PNMAL2 57469 genome.wustl.edu 37 19 46997372 46997372 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020709.1 -1 validated p.L451M 0.931 114 0% 116 23.3% 0 - - - - NULL CALM3 808 genome.wustl.edu 37 19 47112210 47112210 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005184.2 +1 validated p.I131 0.990 183 0% 159 31.4% 718 38.8% - - - HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand FKRP 79147 genome.wustl.edu 37 19 47258824 47258824 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039885.2 +1 reviewed p.P39 0.833 25 0% 17 23.5% 9 33.3% - - - NULL SLC1A5 6510 genome.wustl.edu 37 19 47280577 47280577 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005628.2 -1 validated p.G382S 1.000 26 0% 44 50% 236 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_2 ARHGAP35 2909 genome.wustl.edu 37 19 47425131 47425131 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004491.4 +1 reviewed p.Q1067* 0.992 123 0% 62 11.3% 3 0% - - - NULL ARHGAP35 2909 genome.wustl.edu 37 19 47425247 47425247 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004491.4 +1 reviewed p.Y1105 1.000 141 0% 61 26.2% 11 9% - - - NULL BBC3 27113 genome.wustl.edu 37 19 47725059 47725059 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127240.1 -1 validated p.G229C 1.000 63 0% 64 26.6% 34 50% - - - NULL CCDC9 26093 genome.wustl.edu 37 19 47774701 47774701 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015603.2 +1 validated p.E454D 0.197 237 0% 226 14.6% 40 20% unknown(0) deleterious(0) - NULL MEIS3 56917 genome.wustl.edu 37 19 47910210 47910210 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020160.1 -1 validated p.S384I 1.000 98 0% 96 15.6% 6 0% possibly_damaging(0.805) deleterious(0.05) deleterious(0.648) superfamily_Homeodomain-like MEIS3 56917 genome.wustl.edu 37 19 47920586 47920586 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020160.1 -1 validated p.P12T 1.000 87 0% 70 12.9% 2 0% benign(0.058) tolerated(0.17) neutral(0.062) NULL ENSG00000245602 0 genome.wustl.edu 37 19 47998638 47998638 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000500835 +1 known NULL 0.157 20 0% 12 33.3% 0 - - - - - GLTSCR1 29998 genome.wustl.edu 37 19 48197734 48197734 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015711.3 +1 provisional p.S882 0.274 20 0% 66 19.7% 0 - - - - NULL GLTSCR1 29998 genome.wustl.edu 37 19 48202268 48202268 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015711.3 +1 provisional p.T1148 1.000 104 0% 128 23.4% 14 21.4% - - - NULL GLTSCR2 29997 genome.wustl.edu 37 19 48259945 48259945 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015710.4 +1 validated p.K458 1.000 126 0% 133 21.1% 550 34.9% - - - NULL SULT2A1 6822 genome.wustl.edu 37 19 48386910 48386910 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003167.3 -1 reviewed p.T90M 0.000 325 0% 125 23.2% 0 - benign(0) tolerated(0.13) neutral(0.253) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF114 163071 genome.wustl.edu 37 19 48789111 48789111 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153608.1 +1 provisional p.T77M 0.000 159 0.6% 120 27.5% 0 - possibly_damaging(0.897) tolerated(0.18) neutral(0.410) NULL ZNF114 163071 genome.wustl.edu 37 19 48789682 48789682 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153608.1 +1 provisional p.M267I 0.001 123 0% 119 25.2% 0 - possibly_damaging(0.686) tolerated(0.11) deleterious(0.516) NULL CCDC114 93233 genome.wustl.edu 37 19 48800591 48800591 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144577.3 -1 validated p.R552I 0.001 36 0% 32 15.6% 4 25% possibly_damaging(0.449) deleterious(0) deleterious(0.592) NULL SYNGR4 23546 genome.wustl.edu 37 19 48869120 48869120 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012451.2 +1 reviewed p.L7 0.998 81 0% 87 11.5% 1 0% - - - NULL GRIN2D 2906 genome.wustl.edu 37 19 48917266 48917266 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000836.2 +1 reviewed p.T368 0.969 179 0% 177 29.9% 1 0% - - - HMMPfam_ANF_receptor,superfamily_SSF53822 GRIN2D 2906 genome.wustl.edu 37 19 48917278 48917278 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000836.2 +1 reviewed p.R372 0.997 193 0% 173 12.7% 1 100% - - - HMMPfam_ANF_receptor,superfamily_SSF53822 CYTH2 9266 genome.wustl.edu 37 19 48981759 48981759 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017457.4 +1 reviewed p.A342V 0.999 92 0% 81 18.5% 114 42.1% benign(0.115) deleterious(0.03) neutral(0.373) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like LMTK3 114783 genome.wustl.edu 37 19 49005769 49005769 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080434.1 -1 provisional p.D268Y 1.000 23 0% 32 25% 0 - possibly_damaging(0.951) deleterious(0) deleterious(0.839) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) LMTK3 114783 genome.wustl.edu 37 19 49012201 49012201 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080434.1 -1 provisional p.D184G 1.000 49 0% 62 29% 1 0% benign(0.047) tolerated(0.43) neutral(0.017) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP LMTK3 114783 genome.wustl.edu 37 19 49013838 49013838 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080434.1 -1 provisional p.L59M 1.000 139 0% 117 21.4% 0 - probably_damaging(0.989) deleterious(0) deleterious(0.884) NULL MAMSTR 284358 genome.wustl.edu 37 19 49218963 49218963 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130915.1 -1 validated p.S53 0.002 113 0% 115 21.7% 0 - - - - NULL RASIP1 54922 genome.wustl.edu 37 19 49228045 49228045 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017805.2 -1 validated p.L767P 1.000 183 0% 147 21.1% 6 16.6% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) NULL IZUMO1 284359 genome.wustl.edu 37 19 49245511 49245511 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182575.2 -1 validated p.N185K 0.039 264 0% 372 21.2% 0 - benign(0.271) tolerated(0.06) neutral(0.352) superfamily_Immunoglobulin FGF21 26291 genome.wustl.edu 37 19 49259658 49259658 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019113.2 +1 reviewed p.Q55H 0.809 68 0% 79 27.8% 0 - benign(0.156) tolerated(0.59) neutral(0.018) HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like BCAT2 587 genome.wustl.edu 37 19 49303312 49303312 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001190.3 -1 reviewed p.E153K 0.999 48 0% 40 20% 76 46% benign(0.002) tolerated(0.96) - HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes PLEKHA4 57664 genome.wustl.edu 37 19 49348778 49348778 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020904.2 -1 validated p.H554 0.005 144 0% 121 28.1% 58 32.7% - - - NULL TULP2 7288 genome.wustl.edu 37 19 49385368 49385368 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003323.2 -1 validated p.N456 0.014 232 0% 180 22.8% 0 - - - - HMMPfam_Tub,superfamily_Tubby_C TULP2 7288 genome.wustl.edu 37 19 49399780 49399780 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003323.2 -1 validated p.R40C 1.000 64 0% 68 10.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL BAX 581 genome.wustl.edu 37 19 49464242 49464242 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004324.3 +1 reviewed p.P182L 0.014 17 0% 16 31.2% 31 64.5% unknown(0) deleterious(0) - NULL GYS1 2997 genome.wustl.edu 37 19 49472604 49472604 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002103.4 -1 reviewed p.L719I 0.004 20 0% 17 23.5% 48 52% unknown(0) tolerated(0.15) - NULL RUVBL2 10856 genome.wustl.edu 37 19 49507654 49507654 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006666.1 +1 reviewed p.G82W 0.995 54 0% 43 30.2% 182 44.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540 RUVBL2 10856 genome.wustl.edu 37 19 49518862 49518862 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006666.1 +1 reviewed p.V429I 1.000 88 0% 108 23.1% 536 48.6% possibly_damaging(0.851) tolerated(0.13) deleterious(0.580) HMMPfam_TIP49,superfamily_SSF52540 HRC 3270 genome.wustl.edu 37 19 49656860 49656860 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002152.2 -1 reviewed p.E545D 0.877 155 0% 169 25.4% 1 0% benign(0.142) tolerated(0.64) neutral(0.015) NULL HRC 3270 genome.wustl.edu 37 19 49657503 49657503 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002152.2 -1 reviewed p.A331D 0.001 707 0% 643 20.2% 0 - benign(0) tolerated(1) - HMMPfam_Hist_rich_Ca-bd HRC 3270 genome.wustl.edu 37 19 49657752 49657754 + In_Frame_Del DEL TCG TCG - novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 TCG TCG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002152.2 -1 reviewed p.D251in_frame_del 0.912:0.905:0.003 - - - - - - - - - HMMPfam_Hist_rich_Ca-bd TRPM4 54795 genome.wustl.edu 37 19 49674973 49674973 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017636.2 +1 provisional p.D333Y 0.664 44 0% 44 20.5% 13 53.8% probably_damaging(0.965) deleterious(0) deleterious(0.851) NULL TRPM4 54795 genome.wustl.edu 37 19 49705363 49705363 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017636.2 +1 provisional p.N1032 1.000 172 0% 153 26.1% 58 39.6% - - - HMMPfam_Ion_trans SLC6A16 28968 genome.wustl.edu 37 19 49797169 49797169 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014037.2 -1 validated p.S511 0.002 506 0% 250 11.6% 2 50% - - - HMMPfam_SNF CCDC155 147872 genome.wustl.edu 37 19 49900948 49900948 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144688.4 +1 validated p.F147 0.999 158 1.3% 132 21.2% 0 - - - - NULL SLC17A7 57030 genome.wustl.edu 37 19 49934015 49934015 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020309.3 -1 reviewed p.G482C 0.999 70 0% 64 29.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_MFS_gen_substrate_transporter ALDH16A1 126133 genome.wustl.edu 37 19 49967185 49967185 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153329.3 +1 reviewed p.A391 0.139 273 0% 292 23.6% 52 42.3% - - - HMMPfam_Aldedh,superfamily_ALDH-like FLT3LG 2323 genome.wustl.edu 37 19 49979420 49979420 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001459.2 +1 validated p.D55Y 0.925 154 0% 174 12.6% 23 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Flt3_lig,superfamily_4-helical cytokines FLT3LG 2323 genome.wustl.edu 37 19 49983704 49983704 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001459.2 +1 validated p.R211W 0.000 66 0% 29 31% 7 14.2% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL PRR12 57479 genome.wustl.edu 37 19 50102762 50102762 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020719.1 +1 validated p.T1304 0.642 26 0% 29 20.7% 39 35.8% - - - NULL SCAF1 58506 genome.wustl.edu 37 19 50150073 50150073 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021228.2 +1 validated p.R155K 1.000 30 0% 34 20.6% 45 46.6% unknown(0) deleterious(0) - NULL SCAF1 58506 genome.wustl.edu 37 19 50155870 50155870 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021228.2 +1 validated p.R742W 0.550 8 0.000 13 0.308 44 29.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SCAF1 58506 genome.wustl.edu 37 19 50156464 50156464 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021228.2 +1 validated p.V940M 0.061 30 0% 45 20% 86 34.8% probably_damaging(0.964) tolerated(0.06) deleterious(0.729) NULL CPT1C 126129 genome.wustl.edu 37 19 50200582 50200582 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152359.1 +1 provisional e2-1 1.000 296 0% 297 18.5% 0 - - - - - CPT1C 126129 genome.wustl.edu 37 19 50200597 50200597 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152359.1 +1 provisional p.T52 0.002 326 0% 324 25.9% 0 - - - - NULL CPT1C 126129 genome.wustl.edu 37 19 50204610 50204610 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152359.1 +1 provisional p.L164 1.000 46 0% 52 30.8% 0 - - - - NULL CPT1C 126129 genome.wustl.edu 37 19 50214039 50214039 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152359.1 +1 provisional p.G597 1.000 64 0% 69 29% 1 0% - - - HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases TSKS 60385 genome.wustl.edu 37 19 50245180 50245180 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021733.1 -1 reviewed p.A487T 1.000 224 0% 202 21.3% 2 0% probably_damaging(0.955) deleterious(0) deleterious(0.843) NULL MED25 81857 genome.wustl.edu 37 19 50322505 50322505 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030973.3 +1 reviewed p.A86D 1.000 131 0% 182 19.8% 72 40.2% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL MED25 81857 genome.wustl.edu 37 19 50331769 50331769 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030973.3 +1 reviewed p.Q123H 1.000 57 0% 77 18.2% 96 53.1% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) NULL MED25 81857 genome.wustl.edu 37 19 50333449 50333449 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030973.3 +1 reviewed p.L265M 0.985 71 1.4% 81 35.8% 55 58.1% possibly_damaging(0.701) tolerated(0.1) deleterious(0.538) NULL MED25 81857 genome.wustl.edu 37 19 50338308 50338308 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030973.3 +1 reviewed p.S516 0.975 129 0% 126 15.9% 195 32.8% - - - NULL MED25 81857 genome.wustl.edu 37 19 50340138 50340138 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000377077 +1 known p.G717S 0.995 31 0% 33 36.4% 39 30.7% unknown(0) deleterious(0.04) - NULL PTOV1 53635 genome.wustl.edu 37 19 50360309 50360309 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017432.3 +1 provisional p.K212N 1.000 126 0% 158 23.4% 430 42% possibly_damaging(0.749) tolerated(0.17) neutral(0.334) NULL IL4I1 259307 genome.wustl.edu 37 19 50394310 50394310 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172374.1 -1 reviewed p.D253N 1.000 43 0% 49 14.3% 86 30.2% probably_damaging(0.965) deleterious(0.04) deleterious(0.756) HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain ATF5 22809 genome.wustl.edu 37 19 50435679 50435679 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012068.4 +1 validated p.G60D 1.000 226 0% 220 17.3% 92 32.6% probably_damaging(0.961) deleterious(0) deleterious(0.849) NULL VRK3 51231 genome.wustl.edu 37 19 50496210 50496210 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016440.3 -1 reviewed e8-1 1.000 209 0% 133 27.1% 3 100% - - - - LOC100287477 100287477 genome.wustl.edu 37 19 50562949 50562949 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343656.1 -1 model p.T237M 0.142 51 0% 35 20% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers IZUMO2 126123 genome.wustl.edu 37 19 50657873 50657873 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152358.2 -1 validated p.V203M 0.003 273 0% 198 15.2% 0 - benign(0) tolerated(0.22) neutral(0.042) NULL MYH14 79784 genome.wustl.edu 37 19 50726365 50726365 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077186.1 +1 reviewed p.C196 1.000 330 0% 328 19.2% 3 100% - - - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH14 79784 genome.wustl.edu 37 19 50762515 50762515 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077186.1 +1 reviewed p.R750W 1.000 57 0% 30 20% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH14 79784 genome.wustl.edu 37 19 50770176 50770176 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077186.1 +1 reviewed p.Q880* 1.000 53 0% 38 10.5% 13 7.6% - - - NULL MYH14 79784 genome.wustl.edu 37 19 50780040 50780040 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077186.1 +1 reviewed p.E1203A 0.999 49 0% 36 30.6% 11 9% benign(0.125) tolerated(0.7) neutral(0.013) HMMPfam_Myosin_tail_1 POLD1 5424 genome.wustl.edu 37 19 50911984 50911984 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000391817 +1 known p.A599V 0.000 41 0% 47 21.3% 0 - - - - HMMSmart_SM00486,superfamily_DNA/RNA polymerases POLD1 5424 genome.wustl.edu 37 19 50912058 50912058 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002691.2 +1 validated p.I598V 1.000 85 0% 136 21.3% 93 54.8% benign(0.17) tolerated(0.13) neutral(0.268) HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672 POLD1 5424 genome.wustl.edu 37 19 50918151 50918151 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002691.2 +1 validated p.R823H 1.000 35 2.9% 48 16.7% 130 41.5% benign(0.007) deleterious(0.03) neutral(0.364) HMMPfam_DNA_pol_B,superfamily_SSF56672 MYBPC2 4606 genome.wustl.edu 37 19 50944179 50944179 + Silent SNP C C T rs190315215 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004533.3 +1 validated p.D205 0.064 73 0% 59 28.8% 14 78.5% - - - NULL MYBPC2 4606 genome.wustl.edu 37 19 50958853 50958853 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004533.3 +1 validated p.G764R 1.000 207 1% 237 22.8% 59 20.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like C19orf63 284361 genome.wustl.edu 37 19 50983901 50983901 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_206538.2 +1 validated p.V156M 0.998 28 0% 26 30.8% 290 18.6% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL LRRC4B 94030 genome.wustl.edu 37 19 51022264 51022264 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080457.1 -1 provisional p.L236 1.000 65 0% 81 21% 3 0% - - - HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058 SHANK1 50944 genome.wustl.edu 37 19 51165264 51165264 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016148.2 -1 validated p.R2148 0.998 46 0% 39 28.2% 5 60% - - - HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain SHANK1 50944 genome.wustl.edu 37 19 51170479 51170479 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016148.2 -1 validated p.P1580S 0.817 26 0% 122 39.3% 1 100% unknown(0) deleterious(0) - NULL SHANK1 50944 genome.wustl.edu 37 19 51172416 51172416 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016148.2 -1 validated p.S934N 0.980 166 0% 137 21.2% 0 - possibly_damaging(0.873) tolerated(0.38) neutral(0.357) NULL SHANK1 50944 genome.wustl.edu 37 19 51220104 51220104 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016148.2 -1 validated p.E25* 1.000 23 0% 14 28.6% 0 - - - - NULL ACPT 93650 genome.wustl.edu 37 19 51297058 51297058 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033068.2 +1 reviewed p.A255T 1.000 90 0% 80 17.5% 0 - probably_damaging(0.959) deleterious(0) deleterious(0.847) HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like C19orf48 84798 genome.wustl.edu 37 19 51301652 51301652 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199249.1 -1 validated p.L18 0.006 54 0% 38 26.3% 352 41.1% - - - NULL KLK1 3816 genome.wustl.edu 37 19 51323185 51323185 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002257.2 -1 reviewed p.G201 0.048 183 0% 152 27.6% 2 0% - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases KLK3 354 genome.wustl.edu 37 19 51363286 51363286 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001648.2 +1 reviewed p.G230D 0.908 557 0% 297 21.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases KLK5 25818 genome.wustl.edu 37 19 51452125 51452125 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077491.1 -1 reviewed p.K194 0.009 326 0% 186 24.7% 0 - - - - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases KLK11 11012 genome.wustl.edu 37 19 51527528 51527528 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144947.1 -1 reviewed p.K111T 0.000 303 0% 296 26.7% 137 45.9% benign(0.148) tolerated(0.13) neutral(0.266) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases SIGLEC9 27180 genome.wustl.edu 37 19 51631744 51631744 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014441.1 +1 provisional p.A394T 0.000 239 0% 166 18.1% 7 0% benign(0.009) tolerated(0.06) neutral(0.323) NULL SIGLEC8 27181 genome.wustl.edu 37 19 51961501 51961501 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014442.2 -1 validated p.C47* 0.028 338 0% 264 26.1% 1 0% - - - HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin SIGLEC5 8778 genome.wustl.edu 37 19 52132804 52132804 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003830.2 -1 validated p.S169 0.155 162 0% 114 7.9% 2 0% - - - HMMPfam_ig,superfamily_SSF48726 SIGLEC5 8778 genome.wustl.edu 37 19 52133290 52133290 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003830.2 -1 validated p.V73M 0.991 450 0% 279 17.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 SIGLEC14 100049587 genome.wustl.edu 37 19 52149198 52149198 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098612.1 -1 validated p.S179 1.000 144 0% 100 36% 4 0% - - - HMMPfam_ig,superfamily_SSF48726 SIGLEC14 100049587 genome.wustl.edu 37 19 52149634 52149634 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098612.1 -1 validated p.K99N 0.003 458 0% 268 19% 0 - benign(0.003) tolerated(0.91) - HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 SIGLEC14 100049587 genome.wustl.edu 37 19 52149985 52149985 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098612.1 -1 validated p.L10M 1.000 176 0% 94 12.8% 1 0% probably_damaging(0.977) tolerated(0.11) deleterious(0.691) NULL ZNF649 65251 genome.wustl.edu 37 19 52394499 52394499 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023074.3 -1 validated p.R297I 1.000 408 0% 249 12.4% 7 14.2% benign(0.29) deleterious(0) deleterious(0.534) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF613 79898 genome.wustl.edu 37 19 52448197 52448197 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031721.3 +1 validated p.R354H 0.895 288 0% 216 25.5% 7 28.5% probably_damaging(0.992) tolerated(0.56) neutral(0.454) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF613 79898 genome.wustl.edu 37 19 52448391 52448391 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031721.3 +1 validated p.R419* 0.910 244 0% 223 21.5% 8 37.5% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF613 79898 genome.wustl.edu 37 19 52448490 52448490 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031721.3 +1 validated p.G452* 0.923 198 0% 165 28.5% 9 55.5% - - - superfamily_C2H2 and C2HC zinc fingers ZNF613 79898 genome.wustl.edu 37 19 52448647 52448647 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031721.3 +1 validated p.R504K 0.995 169 0% 125 20.8% 19 42.1% probably_damaging(0.993) tolerated(0.16) deleterious(0.510) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF350 59348 genome.wustl.edu 37 19 52468677 52468677 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021632.3 -1 validated p.K343N 0.979 257 0% 142 14.8% 15 13.3% possibly_damaging(0.798) tolerated(0.07) deleterious(0.619) superfamily_C2H2 and C2HC zinc fingers ZNF350 59348 genome.wustl.edu 37 19 52471879 52471879 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021632.3 -1 validated p.E64K 0.010 522 0% 213 23.5% 6 33.3% benign(0.053) tolerated(0.14) neutral(0.253) HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF615 284370 genome.wustl.edu 37 19 52496986 52496986 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198480.2 -1 provisional p.R448Q 0.126 458 0% 216 20.8% 6 33.3% possibly_damaging(0.726) tolerated(0.17) neutral(0.323) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF614 80110 genome.wustl.edu 37 19 52519095 52519095 + Nonstop_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025040.3 -1 validated p.*586R 0.189 397 0% 295 22.4% 7 42.8% - - - NULL ZNF614 80110 genome.wustl.edu 37 19 52521291 52521291 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025040.3 -1 validated p.D70Y 0.009 754 0.1% 481 12.9% 2 0% benign(0.079) deleterious(0.01) neutral(0.411) NULL ZNF841 284371 genome.wustl.edu 37 19 52570424 52570424 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136499.1 -1 validated p.K237 0.055 333 0% 187 17.6% 3 33.3% - - - NULL ZNF836 162962 genome.wustl.edu 37 19 52659960 52659960 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001102657.1 -1 provisional p.G326* 1.000 412 0% 231 26% 1 100% - - - superfamily_SSF57667 PPP2R1A 5518 genome.wustl.edu 37 19 52714583 52714583 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014225.5 +1 reviewed p.A114V 1.000 57 0% 52 28.8% 212 32.5% benign(0.002) tolerated(0.15) neutral(0.241) HMMPfam_HEAT,superfamily_ARM repeat PPP2R1A 5518 genome.wustl.edu 37 19 52715952 52715952 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014225.5 +1 reviewed p.L173M 1.000 72 0% 57 19.3% 200 36.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HEAT,superfamily_ARM repeat PPP2R1A 5518 genome.wustl.edu 37 19 52715982 52715982 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014225.5 +1 reviewed p.R183W 1.000 67 0% 53 43.4% 239 51% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HEAT,superfamily_ARM repeat ZNF766 90321 genome.wustl.edu 37 19 52785395 52785395 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010851.2 +1 validated p.E17G 0.945 785 0% 542 19.4% 6 83.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF766 90321 genome.wustl.edu 37 19 52793333 52793333 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010851.2 +1 validated p.V97L 0.000 255 0% 203 23.6% 4 25% benign(0.001) tolerated(0.42) neutral(0.014) NULL ZNF528 84436 genome.wustl.edu 37 19 52919001 52919001 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032423.2 +1 validated p.C299Y 0.865 197 0% 111 18.9% 3 33.3% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF578 147660 genome.wustl.edu 37 19 53007965 53007965 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099694.1 +1 validated p.L41M 0.064 658 0% 399 11.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF808 388558 genome.wustl.edu 37 19 53057194 53057194 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039886.3 +1 validated p.P342H 0.979 407 0% 236 22% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_C2H2 and C2HC zinc fingers ZNF808 388558 genome.wustl.edu 37 19 53058177 53058177 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039886.3 +1 validated p.R670C 0.224 389 0% 210 25.7% 0 - possibly_damaging(0.936) deleterious(0) deleterious(0.826) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF83 55769 genome.wustl.edu 37 19 53116458 53116458 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105549.1 -1 validated p.E454* 0.999 290 0% 162 25.9% 22 45.4% - - - superfamily_C2H2 and C2HC zinc fingers ZNF83 55769 genome.wustl.edu 37 19 53116751 53116751 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105549.1 -1 validated p.R356H 0.000 339 0.3% 113 28.3% 23 56.5% benign(0.017) tolerated(0.4) neutral(0.017) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF611 81856 genome.wustl.edu 37 19 53208992 53208992 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030972.3 -1 validated p.S439L 0.000 504 0% 227 21.1% 4 25% benign(0.334) deleterious(0.02) deleterious(0.488) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes ZNF611 81856 genome.wustl.edu 37 19 53219083 53219083 + Splice_Site SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030972.3 -1 validated e1+2 0.232 319 0.3% 273 18.3% 0 - - - - - ZNF600 162966 genome.wustl.edu 37 19 53269662 53269662 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198457.2 -1 validated p.K449N 0.004 428 0% 165 13.9% 6 16.6% possibly_damaging(0.841) deleterious(0) deleterious(0.766) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF28 7576 genome.wustl.edu 37 19 53303646 53303646 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006969.2 -1 validated p.R431 0.326 415 0% 373 22.8% 8 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF468 90333 genome.wustl.edu 37 19 53344538 53344538 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008801.1 -1 validated p.A337T 0.020 425 0.2% 204 15.7% 7 28.5% benign(0) tolerated(0.4) neutral(0.016) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF816 125893 genome.wustl.edu 37 19 53456042 53456042 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031665.1 -1 validated p.A51D 0.102 418 0% 397 23.7% 7 28.5% benign(0) tolerated(1) - HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box ZNF347 84671 genome.wustl.edu 37 19 53644696 53644696 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032584.2 -1 validated p.C462Y 1.000 482 0.2% 230 24.3% 5 60% benign(0.407) deleterious(0) deleterious(0.576) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF347 84671 genome.wustl.edu 37 19 53645385 53645385 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032584.2 -1 validated p.T232 0.000 461 0% 251 14.7% 2 0% - - - NULL ZNF347 84671 genome.wustl.edu 37 19 53652009 53652009 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032584.2 -1 validated p.P66S 0.004 643 0% 373 21.4% 6 83.3% probably_damaging(0.991) tolerated(0.14) deleterious(0.694) HMMSmart_SM00349 ZNF818P 390963 genome.wustl.edu 37 19 53716392 53716392 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000344759 +1 known p.V52F 0.000 21 0% 18 38.9% 3 66.6% - - - NULL ZNF677 342926 genome.wustl.edu 37 19 53747102 53747102 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182609.2 -1 provisional p.W22R 1.000 410 0% 250 19.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box VN1R4 317703 genome.wustl.edu 37 19 53770690 53770690 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173857.2 -1 validated p.A77T 0.024 124 0% 100 23% 0 - benign(0.003) deleterious(0.01) neutral(0.406) HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like BIRC8 112401 genome.wustl.edu 37 19 53793279 53793279 + Nonsense_Mutation SNP C C A rs111817867 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033341.3 -1 validated p.E117* 0.006 648 0% 628 22% 0 - - - - superfamily_Inhibitor of apoptosis (IAP) repeat BIRC8 112401 genome.wustl.edu 37 19 53793310 53793310 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033341.3 -1 validated p.S106R 0.005 728 0% 718 21% 0 - benign(0.002) tolerated(0.13) neutral(0.253) superfamily_Inhibitor of apoptosis (IAP) repeat ZNF845 91664 genome.wustl.edu 37 19 53855365 53855365 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138374.1 +1 validated p.T479 0.000 253 0.4% 201 23.9% 4 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF525 170958 genome.wustl.edu 37 19 53885236 53885236 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000474037 +1 known p.K468N 0.001 142 0% 72 29.2% 2 0% probably_damaging(0.992) deleterious(0.04) deleterious(0.796) NULL ZNF813 126017 genome.wustl.edu 37 19 53994705 53994705 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004301.3 +1 validated p.G407R 1.000 343 0.3% 150 25.3% 1 100% possibly_damaging(0.739) deleterious(0.04) deleterious(0.619) superfamily_SSF57667 ZNF331 55422 genome.wustl.edu 37 19 54080123 54080123 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079906.1 +1 validated p.M103I 0.000 208 0% 118 29.7% 2 0% benign(0.176) tolerated(0.79) neutral(0.017) NULL ZNF331 55422 genome.wustl.edu 37 19 54080136 54080136 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079906.1 +1 validated p.V108I 0.000 218 0% 126 12.7% 2 50% benign(0.067) deleterious(0.04) neutral(0.353) NULL ZNF331 55422 genome.wustl.edu 37 19 54080852 54080852 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079906.1 +1 validated p.E346D 0.340 259 0% 140 20.7% 10 20% possibly_damaging(0.666) deleterious(0) deleterious(0.680) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF331 55422 genome.wustl.edu 37 19 54080885 54080885 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001079906.1 +1 validated p.C357 0.000 251 0% 137 18.2% 5 40% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MIR516B1 574490 genome.wustl.edu 37 19 54240158 54240158 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000385211 +1 known NULL 0.009 635 0% 229 27.9% 0 - - - - - MIR520H 574493 genome.wustl.edu 37 19 54245773 54245773 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000385126 +1 known NULL 0.006 489 0% 194 9.8% 0 - - - - - MIR519A1 574496 genome.wustl.edu 37 19 54255729 54255729 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000385257 +1 known NULL 0.025 610 0% 331 20.8% 0 - - - - - NLRP12 91662 genome.wustl.edu 37 19 54313244 54313244 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144687.2 -1 reviewed p.A557T 0.996 51 0% 52 15.4% 2 0% probably_damaging(0.994) tolerated(0.28) deleterious(0.484) NULL NLRP12 91662 genome.wustl.edu 37 19 54313665 54313665 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144687.2 -1 reviewed p.Q416H 1.000 53 0% 33 12.1% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL NLRP12 91662 genome.wustl.edu 37 19 54314033 54314033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144687.2 -1 reviewed p.D294N 0.987 80 0% 58 27.6% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_NACHT MYADM 91663 genome.wustl.edu 37 19 54376973 54376973 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001020818.1 +1 validated p.M64V 0.399 137 0% 178 23.6% 159 40.8% possibly_damaging(0.772) tolerated(0.81) neutral(0.287) HMMPfam_MARVEL PRKCG 5582 genome.wustl.edu 37 19 54401357 54401357 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002739.3 +1 reviewed p.F362L 1.000 301 0% 303 20.8% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase TFPT 29844 genome.wustl.edu 37 19 54611633 54611633 + Missense_Mutation SNP C C A rs61746580 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013342.3 -1 validated p.E141D 1.000 80 0% 80 21.2% 61 32.7% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL PRPF31 26121 genome.wustl.edu 37 19 54621832 54621832 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015629.3 +1 reviewed p.K58N 1.000 360 0% 267 19.1% 73 5.4% benign(0.221) deleterious(0.04) neutral(0.371) NULL PRPF31 26121 genome.wustl.edu 37 19 54626940 54626940 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015629.3 +1 reviewed e5+1 1.000 167 0% 143 21.7% 8 100% - - - - CNOT3 4849 genome.wustl.edu 37 19 54648045 54648045 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014516.2 +1 validated p.R154C 0.873 335 0% 296 23.6% 69 31.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Not3 CNOT3 4849 genome.wustl.edu 37 19 54649413 54649413 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014516.2 +1 validated p.R188H 1.000 94 0% 110 13.6% 64 26.5% possibly_damaging(0.807) deleterious(0) deleterious(0.748) HMMPfam_Not3 MBOAT7 79143 genome.wustl.edu 37 19 54682523 54682523 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024298.3 -1 reviewed p.Q330H 1.000 45 0% 55 29.1% 95 43.1% benign(0.01) tolerated(0.61) neutral(0.005) HMMPfam_MBOAT LILRB5 10990 genome.wustl.edu 37 19 54758901 54758901 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081442.1 -1 reviewed e6-1 0.081 64 0% 54 16.7% 0 - - - - - LILRB2 10288 genome.wustl.edu 37 19 54783290 54783290 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005874.3 -1 reviewed p.R190C 0.000 309 0% 255 28.6% 11 0% benign(0.041) deleterious(0.03) neutral(0.367) HMMPfam_ig,superfamily_Immunoglobulin LILRA3 11026 genome.wustl.edu 37 19 54802187 54802187 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006865.3 -1 validated p.P334L 0.000 76 0% 58 39.7% 3 0% possibly_damaging(0.663) tolerated(0.13) deleterious(0.487) HMMSmart_IG,superfamily_SSF48726 LILRA3 11026 genome.wustl.edu 37 19 54804147 54804147 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006865.3 -1 validated p.I9 0.006 265 0.4% 194 49% 1 0% - - - NULL LILRA4 23547 genome.wustl.edu 37 19 54849827 54849827 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012276.3 -1 reviewed p.N65 0.000 234 0% 185 24.9% 2 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin TTYH1 57348 genome.wustl.edu 37 19 54930463 54930463 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005367.1 +1 reviewed p.V96 0.949 56 0% 59 10.2% 0 - - - - HMMPfam_Tweety LENG8 114823 genome.wustl.edu 37 19 54967355 54967355 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052925.2 +1 validated p.S412N 1.000 89 0% 68 14.7% 20 10% probably_damaging(0.996) tolerated(0.22) deleterious(0.504) NULL LENG9 94059 genome.wustl.edu 37 19 54973737 54973737 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198988.1 -1 validated p.V347M 0.000 27 0% 35 14.3% 23 39.1% possibly_damaging(0.475) tolerated(0.05) deleterious(0.502) superfamily_Cyc_nuc_Pdiester LILRA1 11024 genome.wustl.edu 37 19 55106148 55106148 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006863.1 +1 provisional p.T30I 0.110 200 0% 173 31.2% 0 - probably_damaging(0.989) tolerated(0.4) neutral(0.456) superfamily_Immunoglobulin LILRA1 11024 genome.wustl.edu 37 19 55106781 55106781 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006863.1 +1 provisional p.R192M 0.002 453 0% 350 22.3% 2 0% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin LILRB1 10859 genome.wustl.edu 37 19 55147036 55147036 + Missense_Mutation SNP G G T rs61737692 byFrequency TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081637.1 +1 reviewed p.E543D 0.020 145 0% 138 24.6% 24 0% probably_damaging(0.961) deleterious(0.01) deleterious(0.810) NULL KIR3DL1 3811 genome.wustl.edu 37 19 55341648 55341648 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013289.2 +1 reviewed p.P418H 0.004 1062 0% 607 20.4% 0 - possibly_damaging(0.44) deleterious(0) deleterious(0.588) NULL KIR2DS4 3809 genome.wustl.edu 37 19 55349322 55349322 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000339924 +1 known p.V121A 0.000 580 0% 374 22.7% 0 - possibly_damaging(0.733) deleterious(0) deleterious(0.713) superfamily_Immunoglobulin KIR3DL2 3812 genome.wustl.edu 37 19 55377847 55377847 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006737.2 +1 reviewed p.E376D 0.004 576 0.2% 321 22.4% 1 0% benign(0.157) deleterious(0) neutral(0.459) NULL FCAR 2204 genome.wustl.edu 37 19 55399619 55399619 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002000.2 +1 reviewed p.L203M 0.025 167 0% 113 23.9% 1 0% benign(0.332) tolerated(0.11) neutral(0.376) HMMSmart_SM00409,superfamily_Immunoglobulin NLRP2 55655 genome.wustl.edu 37 19 55494199 55494199 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017852.3 +1 validated p.A378V 0.104 61 0% 74 24.3% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases NLRP2 55655 genome.wustl.edu 37 19 55501875 55501875 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017852.3 +1 validated p.E848G 0.024 402 0% 294 23.1% 0 - possibly_damaging(0.559) tolerated(0.06) deleterious(0.513) HMMSmart_SM00368,superfamily_RNI-like NLRP2 55655 genome.wustl.edu 37 19 55501892 55501892 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017852.3 +1 validated p.E854* 0.194 429 0% 335 19.4% 0 - - - - HMMSmart_SM00368,superfamily_RNI-like RDH13 112724 genome.wustl.edu 37 19 55570582 55570582 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000415061 -1 known p.V43M 0.960 92 0% 103 21.4% 6 50% probably_damaging(0.965) deleterious(0) deleterious(0.851) HMMPfam_adh_short,superfamily_NAD(P)-bd PPP1R12C 54776 genome.wustl.edu 37 19 55606835 55606835 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017607.2 -1 provisional p.W455* 0.017 34 0% 36 27.8% 39 5.1% - - - NULL DNAAF3 352909 genome.wustl.edu 37 19 55670722 55670722 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178837.3 -1 validated p.A492V 0.000 75 0% 78 20.5% 25 44% benign(0.14) tolerated(0.16) neutral(0.071) NULL PTPRH 5794 genome.wustl.edu 37 19 55708151 55708151 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002842.3 -1 validated p.D666Y 0.013 90 0% 74 27% 18 22.2% probably_damaging(0.97) deleterious(0.04) deleterious(0.761) NULL TMEM86B 255043 genome.wustl.edu 37 19 55740104 55740104 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173804.4 -1 validated p.D2 0.000 24 0% 36 36.1% 3 66.6% - - - NULL BRSK1 84446 genome.wustl.edu 37 19 55814728 55814728 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032430.1 +1 validated p.R360W 1.000 98 0% 137 29.9% 4 50% possibly_damaging(0.893) deleterious(0) deleterious(0.796) NULL BRSK1 84446 genome.wustl.edu 37 19 55815459 55815459 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032430.1 +1 validated p.S443I 1.000 129 0% 185 19.5% 3 33.3% benign(0.056) deleterious(0.01) neutral(0.409) NULL FAM71E2 284418 genome.wustl.edu 37 19 55871036 55871036 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145402.1 -1 predicted p.Q400H 0.003 90 0% 92 22.8% 0 - benign(0.057) tolerated(0.22) neutral(0.046) NULL TMEM190 147744 genome.wustl.edu 37 19 55889376 55889376 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139172.1 +1 provisional p.P113 0.000 37 0% 33 18.2% 4 50% - - - NULL ISOC2 79763 genome.wustl.edu 37 19 55966469 55966469 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024710.2 -1 validated p.V158M 1.000 32 0% 32 15.6% 259 1.5% benign(0.212) tolerated(0.33) neutral(0.044) HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase ZNF628 89887 genome.wustl.edu 37 19 55994385 55994385 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033113.2 +1 validated p.L605M 1.000 43 0% 25 20% 7 28.5% probably_damaging(0.984) deleterious(0.01) deleterious(0.836) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF628 89887 genome.wustl.edu 37 19 55994967 55994967 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033113.2 +1 validated p.Q799* 0.938 17 0% 39 30.8% 1 0% - - - NULL ZNF628 89887 genome.wustl.edu 37 19 55995031 55995031 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033113.2 +1 validated p.R820Q 0.992 40 0% 52 15.4% 7 14.2% unknown(0) deleterious(0.02) - NULL SSC5D 284297 genome.wustl.edu 37 19 56005988 56005988 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144950.1 +1 provisional p.G409C 0.004 43 0% 53 32.1% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SRCR-like SSC5D 284297 genome.wustl.edu 37 19 56011556 56011556 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144950.1 +1 provisional p.T693 0.614 112 0% 155 16.1% 1 0% - - - NULL SSC5D 284297 genome.wustl.edu 37 19 56024533 56024533 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144950.1 +1 provisional p.D981Y 0.096 62 0% 66 18.2% 1 0% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL SSC5D 284297 genome.wustl.edu 37 19 56029321 56029321 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144950.1 +1 provisional p.T1226 0.000 1335 0% 1321 19.5% 4 0% - - - NULL SSC5D 284297 genome.wustl.edu 37 19 56029495 56029495 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144950.1 +1 provisional p.T1284 0.016 816 0% 820 23.8% 1 0% - - - NULL SBK2 646643 genome.wustl.edu 37 19 56047460 56047460 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001101401.1 -1 provisional p.L68 1.000 52 0% 21 19% 0 - - - - superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase CCDC106 29903 genome.wustl.edu 37 19 56160884 56160884 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013301.2 +1 validated p.E83K 1.000 164 0% 184 25% 59 49.1% possibly_damaging(0.945) deleterious(0) deleterious(0.834) NULL U2AF2 11338 genome.wustl.edu 37 19 56173963 56173963 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007279.2 +1 reviewed p.D194 1.000 183 0% 183 23.5% 127 37% - - - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD U2AF2 11338 genome.wustl.edu 37 19 56181010 56181010 + Silent SNP C C T rs147043069 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007279.2 +1 reviewed p.I415 0.946 208 0% 190 23.7% 321 40.8% - - - HMMSmart_SM00360,superfamily_RNA-binding domain RBD EPN1 29924 genome.wustl.edu 37 19 56189046 56189046 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130071.1 +1 validated p.A60T 0.000 269 0% 353 23.2% 0 - unknown(0) - - NULL EPN1 29924 genome.wustl.edu 37 19 56196854 56196854 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001130071.1 +1 validated p.K218N 1.000 70 0% 33 18.2% 180 38.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273 NLRP9 338321 genome.wustl.edu 37 19 56223274 56223274 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176820.2 -1 reviewed p.C912Y 0.123 210 0% 120 25% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00368,superfamily_RNI-like NLRP9 338321 genome.wustl.edu 37 19 56243837 56243837 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176820.2 -1 reviewed p.A454T 0.896 172 1.2% 63 19% 0 - benign(0.049) tolerated(0.09) neutral(0.299) NULL NLRP9 338321 genome.wustl.edu 37 19 56244757 56244757 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176820.2 -1 reviewed p.T147N 0.060 218 0% 149 20.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_NACHT NLRP4 147945 genome.wustl.edu 37 19 56373506 56373506 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134444.4 +1 validated p.G723C 0.009 360 0.3% 124 10.5% 0 - benign(0) tolerated(1) - HMMSmart_SM00368,superfamily_RNI-like NLRP5 126206 genome.wustl.edu 37 19 56565029 56565029 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153447.4 +1 reviewed p.A1052T 0.000 167 0% 102 16.7% 0 - benign(0.028) tolerated(0.58) neutral(0.007) superfamily_SSF52047 ZSCAN5B 342933 genome.wustl.edu 37 19 56704220 56704220 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001080456.2 -1 validated p.L68M 0.025 272 0.4% 168 17.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SCAN,HMMSmart_SCAN ZSCAN5C 649137 genome.wustl.edu 37 19 56717402 56717402 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000376267 +1 known p.P40 0.000 178 0% 150 21.3% 0 - - - - HMMPfam_SCAN,HMMSmart_SCAN ZSCAN5A 79149 genome.wustl.edu 37 19 56736248 56736248 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024303.1 -1 provisional p.S56 0.000 322 0% 291 25.8% 1 0% - - - HMMPfam_SCAN,HMMSmart_SCAN ENSG00000197025 0 genome.wustl.edu 37 19 56884612 56884612 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440984 +1 known p.T35 0.010 18 0% 16 25% 4 50% - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF667 63934 genome.wustl.edu 37 19 56973782 56973782 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000342634 -1 known p.L79 0.000 197 0% 140 26.4% 0 - - - - NULL ZNF470 388566 genome.wustl.edu 37 19 57089807 57089807 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001668.3 +1 validated p.I670 0.510 335 0% 218 23.9% 1 100% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF71 58491 genome.wustl.edu 37 19 57133822 57133822 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021216.4 +1 validated p.K389 0.980 149 0% 110 11.8% 10 20% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF71 58491 genome.wustl.edu 37 19 57134041 57134041 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021216.4 +1 validated p.G462 0.315 62 0% 45 33.3% 14 28.5% - - - superfamily_SSF57667 ZIM2 23619 genome.wustl.edu 37 19 57286559 57286559 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015363.4 -1 reviewed p.C361R 0.634 281 0% 147 23.1% 0 - unknown(0) deleterious(0) - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF264 9422 genome.wustl.edu 37 19 57724079 57724079 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003417.4 +1 reviewed p.P538 0.326 287 0% 141 27% 3 66.6% - - - superfamily_SSF57667 AURKC 6795 genome.wustl.edu 37 19 57746717 57746717 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015878.1 +1 reviewed p.L288M 0.191 174 0% 218 24.3% 6 0% benign(0.005) tolerated(0.56) neutral(0.006) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZNF460 10794 genome.wustl.edu 37 19 57802778 57802778 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006635.3 +1 validated p.T290I 0.008 214 0% 87 21.8% 1 100% benign(0.113) tolerated(0.18) neutral(0.065) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF304 57343 genome.wustl.edu 37 19 57865178 57865178 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020657.2 +1 validated p.R40H 0.029 660 0% 419 18.9% 3 100% benign(0.016) tolerated(0.45) neutral(0.013) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF304 57343 genome.wustl.edu 37 19 57867669 57867669 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020657.2 +1 validated p.C144 0.000 155 0% 103 24.3% 1 0% - - - NULL ZNF304 57343 genome.wustl.edu 37 19 57868160 57868160 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020657.2 +1 validated p.T308I 0.000 320 0% 221 22.2% 4 50% possibly_damaging(0.718) tolerated(0.14) deleterious(0.510) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF304 57343 genome.wustl.edu 37 19 57869083 57869083 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020657.2 +1 validated p.V616I 0.000 254 0% 162 23.5% 0 - possibly_damaging(0.942) deleterious(0.03) deleterious(0.752) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TRAPPC2P1 10597 genome.wustl.edu 37 19 57876326 57876326 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_002166.1 +1 provisional NULL 0.991 206 0% 122 12.3% 14 64.2% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) - ZNF547 284306 genome.wustl.edu 37 19 57888541 57888541 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173631.2 +1 validated p.G66D 0.001 291 0% 127 25.2% 0 - possibly_damaging(0.616) tolerated(0.38) neutral(0.232) HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF547 284306 genome.wustl.edu 37 19 57888804 57888804 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173631.2 +1 validated p.K154E 0.524 181 0% 106 24.5% 1 0% benign(0) tolerated(0.43) neutral(0.013) superfamily_C2H2 and C2HC zinc fingers ZNF547 284306 genome.wustl.edu 37 19 57889225 57889225 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173631.2 +1 validated p.R294M 0.615 513 0% 197 18.3% 3 33.3% probably_damaging(0.991) deleterious(0) deleterious(0.889) superfamily_C2H2 and C2HC zinc fingers ZNF17 7565 genome.wustl.edu 37 19 57931064 57931064 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006959.2 +1 validated p.V68 0.003 392 0% 219 19.6% 4 75% - - - HMMSmart_SM00349 ZNF17 7565 genome.wustl.edu 37 19 57931130 57931130 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006959.2 +1 validated p.S90 0.001 331 0% 194 16.5% 3 33.3% - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355 ZNF17 7565 genome.wustl.edu 37 19 57931403 57931403 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006959.2 +1 validated p.E181D 0.000 264 0% 133 24.1% 0 - possibly_damaging(0.948) tolerated(0.32) neutral(0.415) NULL ZNF772 400720 genome.wustl.edu 37 19 57984937 57984937 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024596.2 -1 validated p.R392I 0.000 327 0% 281 23.5% 0 - probably_damaging(0.969) tolerated(0.3) neutral(0.440) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF772 400720 genome.wustl.edu 37 19 57985649 57985649 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024596.2 -1 validated p.D155Y 0.089 299 0% 255 25.9% 1 100% benign(0.147) deleterious(0) neutral(0.458) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF549 256051 genome.wustl.edu 37 19 58046523 58046523 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153263.1 +1 provisional p.T15 0.803 304 0% 236 12.7% 0 - - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF550 162972 genome.wustl.edu 37 19 58058692 58058692 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039654.1 -1 provisional p.R266M 0.054 658 0% 283 19.8% 2 0% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF416 55659 genome.wustl.edu 37 19 58084479 58084479 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017879.1 -1 provisional p.P265T 0.001 356 0% 359 23.7% 4 25% benign(0.001) tolerated(1) - superfamily_SSF57667 ZNF416 55659 genome.wustl.edu 37 19 58089428 58089428 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017879.1 -1 provisional p.T24 0.000 179 0% 193 13% 0 - - - - superfamily_Krueppel-associated_box ZIK1 284307 genome.wustl.edu 37 19 58102319 58102319 + Missense_Mutation SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010879.2 +1 provisional p.E380D 0.468 296 0% 253 11.9% 1 100% benign(0.032) tolerated(0.09) neutral(0.298) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers ZNF530 348327 genome.wustl.edu 37 19 58117327 58117327 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020880.3 +1 validated p.L145R 0.000 91 0% 99 35.4% 0 - possibly_damaging(0.85) tolerated(0.35) neutral(0.348) superfamily_SSF57667 ZNF530 348327 genome.wustl.edu 37 19 58117885 58117885 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020880.3 +1 validated p.S331Y 0.000 293 0% 199 18.1% 4 25% probably_damaging(0.993) tolerated(1) neutral(0.450) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF530 348327 genome.wustl.edu 37 19 58118491 58118491 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020880.3 +1 validated p.A533V 0.001 312 0% 281 15.7% 1 0% benign(0.015) tolerated(0.2) neutral(0.050) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF551 90233 genome.wustl.edu 37 19 58198168 58198168 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138347.3 +1 validated p.F159L 0.004 92 0% 74 20.3% 0 - benign(0.002) tolerated(0.86) neutral(0.001) NULL ZNF551 90233 genome.wustl.edu 37 19 58198609 58198609 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138347.3 +1 validated p.F306L 0.000 168 0% 115 16.5% 2 50% - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF154 7710 genome.wustl.edu 37 19 58213991 58213991 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085384.1 -1 validated p.A109D 0.000 195 0% 171 26.3% 0 - benign(0.001) tolerated(0.62) neutral(0.004) NULL ZNF776 284309 genome.wustl.edu 37 19 58264707 58264707 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173632.3 +1 validated p.S70Y 0.001 312 0% 218 23.9% 1 0% probably_damaging(0.99) deleterious(0.03) deleterious(0.806) HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF776 284309 genome.wustl.edu 37 19 58265860 58265860 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173632.3 +1 validated p.H454Q 1.000 602 0% 292 22.9% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF552 79818 genome.wustl.edu 37 19 58319613 58319613 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024762.3 -1 validated p.R340H 0.000 477 0% 316 20.3% 11 54.5% benign(0.089) tolerated(0.22) neutral(0.049) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF552 79818 genome.wustl.edu 37 19 58319820 58319820 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024762.3 -1 validated p.G271V 0.000 457 0.2% 323 11.8% 7 0% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF418 147686 genome.wustl.edu 37 19 58438338 58438338 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_133460.1 -1 provisional p.G404V 1.000 640 0.3% 421 11.4% 4 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF606 80095 genome.wustl.edu 37 19 58499583 58499583 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025027.3 -1 validated p.T131I 0.004 163 0% 90 18.9% 3 0% benign(0.006) tolerated(0.07) neutral(0.319) NULL ZNF329 79673 genome.wustl.edu 37 19 58640146 58640146 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024620.3 -1 validated p.K242R 0.991 326 0% 253 22.5% 3 66.6% possibly_damaging(0.918) tolerated(0.87) neutral(0.369) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF329 79673 genome.wustl.edu 37 19 58640210 58640210 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024620.3 -1 validated p.H221Y 0.997 306 0% 246 25.6% 11 54.5% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF544 27300 genome.wustl.edu 37 19 58755407 58755407 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014480.2 +1 provisional p.M6I 0.000 219 0% 131 15.3% 58 50% benign(0.014) tolerated(0.28) neutral(0.032) NULL ZNF8 7554 genome.wustl.edu 37 19 58806516 58806516 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021089.2 +1 validated p.L448M 0.980 66 1.5% 32 25% 4 0% possibly_damaging(0.701) deleterious(0.02) deleterious(0.635) NULL ZSCAN22 342945 genome.wustl.edu 37 19 58849838 58849838 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181846.2 +1 validated p.S208T 0.000 166 0% 113 11.5% 2 0% benign(0.073) tolerated(0.28) neutral(0.036) NULL ZNF324B 388569 genome.wustl.edu 37 19 58966576 58966576 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207395.2 +1 validated p.D89Y 0.000 151 0% 197 23.4% 1 100% possibly_damaging(0.519) tolerated(0.11) neutral(0.446) NULL ZNF324B 388569 genome.wustl.edu 37 19 58966766 58966766 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_207395.2 +1 validated p.R152H 0.149 76 0% 92 20.7% 4 75% benign(0.002) tolerated(0.12) neutral(0.261) NULL ZBTB45 84878 genome.wustl.edu 37 19 59027998 59027998 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032792.2 -1 provisional p.A348V 0.408 21 0% 38 21.1% 19 31.5% benign(0.006) tolerated(0.1) neutral(0.286) NULL ZBTB45 84878 genome.wustl.edu 37 19 59028960 59028960 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032792.2 -1 provisional p.R27S 0.629 68 0% 84 21.4% 21 38% benign(0.185) deleterious(0) neutral(0.462) superfamily_BTB/POZ_fold,HMMPfam_BTB TRIM28 10155 genome.wustl.edu 37 19 59060961 59060961 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005762.2 +1 reviewed p.Q642 1.000 101 0% 137 16.8% 663 43.7% - - - HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD MZF1 7593 genome.wustl.edu 37 19 59082703 59082703 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003422.2 -1 validated p.G18 0.000 46 0% 44 15.9% 5 40% - - - NULL NRSN2 80023 genome.wustl.edu 37 20 330448 330448 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024958.2 +1 validated p.R54H 0.000 31 0% 41 31.7% 51 39.2% benign(0) tolerated(0.25) neutral(0.037) NULL TRIB3 57761 genome.wustl.edu 37 20 372074 372074 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021158.3 +1 reviewed p.H145 1.000 38 0% 38 21.1% 21 33.3% - - - superfamily_Kinase_like,HMMPfam_Pkinase TBC1D20 128637 genome.wustl.edu 37 20 419876 419876 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144628.2 -1 validated p.L278M 1.000 317 0% 199 21.1% 31 25.8% probably_damaging(0.982) tolerated(0.08) deleterious(0.726) superfamily_Ypt/Rab-GAP domain of gyp1p SLC52A3 113278 genome.wustl.edu 37 20 746308 746308 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033409.3 -1 validated p.G37 0.993 72 0% 70 15.7% 11 18.1% - - - NULL PSMF1 9491 genome.wustl.edu 37 20 1106170 1106170 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006814.3 +1 reviewed p.L53 1.000 274 0% 198 22.7% 182 40.1% - - - NULL NSFL1C 55968 genome.wustl.edu 37 20 1426360 1426360 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016143.3 -1 reviewed p.R301W 1.000 329 0% 154 26% 171 36.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like SIRPB2 284759 genome.wustl.edu 37 20 1459010 1459010 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122962.1 -1 validated p.V232I 0.009 164 0% 100 16% 0 - benign(0.019) tolerated(0.71) neutral(0.003) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin STK35 140901 genome.wustl.edu 37 20 2097414 2097414 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080836.3 +1 reviewed p.P199L 1.000 354 0.3% 133 19.5% 5 40% benign(0.307) tolerated(0.72) neutral(0.097) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TGM6 343641 genome.wustl.edu 37 20 2375890 2375890 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198994.2 +1 validated p.E78K 0.285 134 0% 146 16.4% 0 - benign(0.039) tolerated(0.7) neutral(0.004) HMMPfam_Transglut_N,superfamily_E set domains TGM6 343641 genome.wustl.edu 37 20 2397967 2397967 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198994.2 +1 validated p.A476T 0.325 46 0% 30 13.3% 0 - benign(0.086) tolerated(0.62) neutral(0.010) NULL TMC2 117532 genome.wustl.edu 37 20 2572973 2572973 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080751.2 +1 validated p.P284 0.995 318 0% 179 22.3% 0 - - - - NULL TMC2 117532 genome.wustl.edu 37 20 2582851 2582851 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080751.2 +1 validated p.C439* 1.000 712 0% 184 22.8% 0 - - - - NULL NOP56 10528 genome.wustl.edu 37 20 2637470 2637470 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006392.2 +1 reviewed p.R404* 1.000 363 0.6% 305 19.3% 183 18% - - - HMMPfam_Nop,superfamily_SSF89124 CPXM1 56265 genome.wustl.edu 37 20 2774977 2774977 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019609.4 -1 reviewed p.T688 0.985 61 0% 62 24.2% 63 1.5% - - - HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain VPS16 64601 genome.wustl.edu 37 20 2842501 2842501 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022575.2 +1 reviewed p.R317H 1.000 149 0.7% 155 10.3% 26 19.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Vps16_N VPS16 64601 genome.wustl.edu 37 20 2843494 2843494 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022575.2 +1 reviewed p.P415 0.018 94 0% 108 15.7% 48 33.3% - - - HMMPfam_Vps16_N VPS16 64601 genome.wustl.edu 37 20 2843543 2843543 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022575.2 +1 reviewed p.R432W 0.977 104 0% 128 25% 30 53.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL VPS16 64601 genome.wustl.edu 37 20 2844635 2844635 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022575.2 +1 reviewed p.A506V 1.000 56 0% 64 25% 48 52% possibly_damaging(0.952) tolerated(0.19) neutral(0.445) NULL PTPRA 5786 genome.wustl.edu 37 20 2998494 2998494 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002836.3 +1 reviewed p.R326W 1.000 409 0.5% 504 22.2% 32 46.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 UBOX5 22888 genome.wustl.edu 37 20 3102384 3102384 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014948.2 -1 validated p.R301* 1.000 87 0% 87 21.8% 8 37.5% - - - HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box UBOX5 22888 genome.wustl.edu 37 20 3103091 3103091 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014948.2 -1 validated p.R65M 1.000 281 0% 249 25.7% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FASTKD5 60493 genome.wustl.edu 37 20 3127786 3127786 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021826.4 -1 validated p.G644D 0.001 78 0% 41 24.4% 18 38.8% benign(0.071) tolerated(0.29) neutral(0.034) NULL FASTKD5 60493 genome.wustl.edu 37 20 3128440 3128440 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021826.4 -1 validated p.R426Q 1.000 202 0% 109 28.4% 10 50% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL ProSAPiP1 9762 genome.wustl.edu 37 20 3146796 3146796 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014731.2 -1 validated p.L224I 1.000 49 0% 96 22.9% 24 62.5% benign(0.158) deleterious(0.02) neutral(0.397) NULL ProSAPiP1 9762 genome.wustl.edu 37 20 3147530 3147530 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014731.2 -1 validated p.A94T 1.000 79 0% 61 23% 11 54.5% benign(0.264) tolerated(0.09) neutral(0.324) NULL SLC4A11 83959 genome.wustl.edu 37 20 3210887 3210887 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032034.3 -1 reviewed p.A495T 1.000 84 0% 90 21.1% 18 66.6% probably_damaging(0.993) deleterious(0.01) deleterious(0.856) HMMPfam_HCO3_cotransp C20orf194 25943 genome.wustl.edu 37 20 3233329 3233329 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009984.1 -1 validated p.L1141 0.997 425 0.2% 413 19.9% 2 0% - - - NULL C20orf194 25943 genome.wustl.edu 37 20 3236733 3236733 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009984.1 -1 validated p.Q1060 0.998 243 0% 240 24.2% 2 50% - - - NULL ATRN 8455 genome.wustl.edu 37 20 3578637 3578637 + Missense_Mutation SNP C C T rs74789109 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_139321.2 +1 reviewed p.T1185I 1.000 420 0% 210 25.2% 17 47% probably_damaging(0.981) tolerated(0.18) deleterious(0.481) NULL ADAM33 80332 genome.wustl.edu 37 20 3655271 3655271 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025220.2 -1 reviewed p.D160 0.453 77 0% 115 17.4% 0 - - - - HMMPfam_Pep_M12B_propep ADAM33 80332 genome.wustl.edu 37 20 3657791 3657791 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025220.2 -1 reviewed e3-1 0.995 103 0% 109 20.2% 0 - - - - - SIGLEC1 6614 genome.wustl.edu 37 20 3677921 3677921 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_023068.3 -1 reviewed p.V731M 0.611 174 0% 199 22.6% 3 0% probably_damaging(0.985) deleterious(0.02) deleterious(0.815) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin HSPA12B 116835 genome.wustl.edu 37 20 3726206 3726206 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052970.3 +1 reviewed p.A174T 1.000 84 0% 88 12.5% 3 0% benign(0.072) tolerated(0.06) neutral(0.328) superfamily_SSF53067 C20orf27 54976 genome.wustl.edu 37 20 3739201 3739201 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000399683 -1 known p.T42I 0.994 200 0% 246 24.8% 96 30.2% - - - NULL PANK2 80025 genome.wustl.edu 37 20 3891319 3891319 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153638.2 +1 reviewed p.Q359 1.000 415 0% 174 15.5% 25 20% - - - HMMPfam_Fumble,superfamily_Actin-like ATPase domain SMOX 54498 genome.wustl.edu 37 20 4163202 4163202 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175839.1 +1 reviewed p.R359H 1.000 78 0% 74 21.6% 36 44.4% possibly_damaging(0.828) deleterious(0.03) deleterious(0.678) HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain PRND 23627 genome.wustl.edu 37 20 4705481 4705481 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012409.2 +1 reviewed p.S95Y 0.915 45 0% 51 21.6% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Prion,superfamily_Prion-like RASSF2 9770 genome.wustl.edu 37 20 4768353 4768353 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014737.2 -1 reviewed p.L247F 1.000 406 0% 221 19.5% 2 0% probably_damaging(0.976) deleterious(0.01) deleterious(0.824) HMMPfam_RA,HMMSmart_RA RASSF2 9770 genome.wustl.edu 37 20 4771210 4771210 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014737.2 -1 reviewed p.R142C 1.000 101 0% 52 25% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC23A2 9962 genome.wustl.edu 37 20 4913118 4913118 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005116.5 -1 reviewed p.A31S 0.003 438 0% 187 21.4% 2 0% benign(0) tolerated(0.8) neutral(0.001) NULL C20orf30 29058 genome.wustl.edu 37 20 5086887 5086887 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009923.1 -1 validated p.A120T 0.469 250 0% 212 21.7% 88 21.5% benign(0) tolerated(1) - HMMPfam_DUF872 C20orf30 29058 genome.wustl.edu 37 20 5090091 5090091 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009923.1 -1 validated p.L59 0.914 248 0% 193 24.9% 92 46.7% - - - NULL PCNA 5111 genome.wustl.edu 37 20 5100336 5100336 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002592.2 -1 reviewed p.L37M 1.000 58 0% 75 26.7% 303 36.9% possibly_damaging(0.63) deleterious(0.03) deleterious(0.585) HMMPfam_PCNA_N,PatternScan_PCNA_1,superfamily_DNA clamp GPCPD1 56261 genome.wustl.edu 37 20 5528342 5528342 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019593.3 -1 validated p.D662N 0.995 305 0% 94 27.7% 11 9% unknown(0) tolerated(0.15) - NULL GPCPD1 56261 genome.wustl.edu 37 20 5559047 5559047 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019593.3 -1 validated p.E228D 1.000 237 0% 161 25.5% 9 11.1% possibly_damaging(0.811) tolerated(0.19) neutral(0.355) NULL C20orf196 149840 genome.wustl.edu 37 20 5843956 5843956 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152504.2 +1 predicted p.D155 0.993 149 0% 68 23.5% 9 44.4% - - - NULL MCM8 84515 genome.wustl.edu 37 20 5948123 5948123 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032485.4 +1 reviewed p.R306Q 1.000 301 0% 200 23% 3 66.6% probably_damaging(0.961) tolerated(0.14) deleterious(0.653) HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins LRRN4 164312 genome.wustl.edu 37 20 6022397 6022397 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152611.3 -1 validated p.Q498H 0.001 160 0% 175 24% 2 50% possibly_damaging(0.509) tolerated(0.15) neutral(0.411) NULL FERMT1 55612 genome.wustl.edu 37 20 6057832 6057832 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017671.4 -1 reviewed p.G674 0.531 141 0% 67 23.9% 1 100% - - - NULL FERMT1 55612 genome.wustl.edu 37 20 6057964 6057964 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017671.4 -1 reviewed p.F630 0.411 139 0% 47 25.5% 0 - - - - NULL HAO1 54363 genome.wustl.edu 37 20 7866360 7866360 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017545.2 -1 reviewed p.A322V 1.000 203 0% 85 21.2% 0 - benign(0.31) deleterious(0.02) deleterious(0.480) HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases PLCB1 23236 genome.wustl.edu 37 20 8862337 8862337 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015192.2 +1 reviewed p.F1164 0.114 220 0% 63 9.5% 10 70% - - - HMMPfam_PLC-beta_C PLCB4 5332 genome.wustl.edu 37 20 9288502 9288502 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000933.3 +1 reviewed p.P14L 1.000 290 0.3% 122 13.9% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_SSF50729 PLCB4 5332 genome.wustl.edu 37 20 9376258 9376258 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000933.3 +1 reviewed p.I501 1.000 374 0.3% 174 23.6% 2 50% - - - superfamily_PLC-like_Pdiesterase_TIM-brl SNAP25 6616 genome.wustl.edu 37 20 10273897 10273897 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_130811.1 +1 reviewed p.F84L 1.000 541 0% 171 25.7% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL C20orf94 128710 genome.wustl.edu 37 20 10541416 10541416 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009608.1 +1 validated p.Q62 0.553 249 0% 98 21.4% 1 100% - - - NULL JAG1 182 genome.wustl.edu 37 20 10625849 10625849 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000214.2 -1 reviewed p.E723D 0.995 220 0% 131 19.8% 28 42.8% probably_damaging(0.991) tolerated(0.61) neutral(0.448) PatternScan_ASX_HYDROXYL,HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196 JAG1 182 genome.wustl.edu 37 20 10632240 10632240 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000214.2 -1 reviewed p.T370I 1.000 119 0% 71 25.4% 15 46.6% possibly_damaging(0.694) tolerated(0.11) deleterious(0.520) HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196 BTBD3 22903 genome.wustl.edu 37 20 11899004 11899004 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014962.2 +1 validated p.K27N 1.000 251 0.4% 85 12.9% 6 66.6% benign(0.079) tolerated(0.07) neutral(0.325) NULL BTBD3 22903 genome.wustl.edu 37 20 11903390 11903390 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014962.2 +1 validated p.F215L 1.000 111 0% 76 21.1% 19 42.1% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB SPTLC3 55304 genome.wustl.edu 37 20 13098361 13098361 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018327.2 +1 validated p.A381S 1.000 107 0% 42 23.8% 3 33.3% possibly_damaging(0.791) deleterious(0.04) deleterious(0.645) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases ESF1 51575 genome.wustl.edu 37 20 13695803 13695803 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016649.3 -1 provisional p.N758 0.002 191 0.5% 116 22.4% 17 41.1% - - - NULL C20orf7 79133 genome.wustl.edu 37 20 13779136 13779136 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024120.4 +1 reviewed p.A170V 1.000 663 0% 343 19.8% 20 35% benign(0.004) tolerated(1) - HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases SEL1L2 80343 genome.wustl.edu 37 20 13846058 13846058 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025229.1 -1 validated p.A503T 1.000 397 0% 104 25% 0 - probably_damaging(0.979) tolerated(0.47) neutral(0.433) superfamily_SSF81901 SEL1L2 80343 genome.wustl.edu 37 20 13850183 13850183 + Silent SNP G G A rs189965456 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000475649 -1 known p.P33L 0.991 327 0% 141 17.7% 1 0% - - - superfamily_HCP-like MACROD2 140733 genome.wustl.edu 37 20 15967743 15967743 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080676.5 +1 validated p.V365M 0.022 492 0% 262 18.7% 6 66.6% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL KIF16B 55614 genome.wustl.edu 37 20 16359927 16359927 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024704.3 -1 validated p.R907H 0.997 201 0% 90 25.6% 4 25% possibly_damaging(0.951) tolerated(0.13) deleterious(0.647) NULL KIF16B 55614 genome.wustl.edu 37 20 16485144 16485144 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024704.3 -1 validated p.R350H 1.000 499 0% 147 17.7% 0 - unknown(0) deleterious(0.02) - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF16B 55614 genome.wustl.edu 37 20 16486737 16486737 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024704.3 -1 validated p.G266 0.995 105 0% 25 24% 4 0% - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases DSTN 11034 genome.wustl.edu 37 20 17585251 17585251 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006870.3 +1 reviewed p.K121 1.000 508 0% 219 21.9% 251 38.6% - - - HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins RRBP1 6238 genome.wustl.edu 37 20 17594840 17594840 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042576.1 -1 reviewed p.G974D 1.000 185 0% 190 21.1% 185 4.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RRBP1 6238 genome.wustl.edu 37 20 17596647 17596647 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042576.1 -1 reviewed p.T859M 0.003 87 0% 59 33.9% 178 50.5% probably_damaging(0.984) tolerated(0.07) deleterious(0.750) NULL RRBP1 6238 genome.wustl.edu 37 20 17602338 17602338 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042576.1 -1 reviewed p.S674 0.018 69 0% 58 20.7% 102 22.5% - - - NULL RRBP1 6238 genome.wustl.edu 37 20 17605248 17605248 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042576.1 -1 reviewed p.E607D 1.000 74 1.4% 85 18.8% 134 5.9% possibly_damaging(0.9) tolerated(0.3) neutral(0.385) NULL RRBP1 6238 genome.wustl.edu 37 20 17617273 17617273 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042576.1 -1 reviewed p.M329I 1.000 68 0% 56 39.3% 119 4.2% benign(0.001) tolerated(0.2) neutral(0.049) NULL RRBP1 6238 genome.wustl.edu 37 20 17623773 17623773 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042576.1 -1 reviewed e3-1 0.904 101 1% 84 32.1% 0 - - - - - SNX5 27131 genome.wustl.edu 37 20 17934737 17934737 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014426.2 -1 reviewed p.D98N 1.000 454 0% 275 18.5% 99 48.4% probably_damaging(0.997) tolerated(0.11) deleterious(0.738) HMMPfam_PX,superfamily_PX domain C20orf72 92667 genome.wustl.edu 37 20 17968818 17968818 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052865.2 +1 predicted p.L247 1.000 203 0% 151 19.2% 19 26.3% - - - NULL CSRP2BP 57325 genome.wustl.edu 37 20 18162388 18162388 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020536.4 +1 reviewed p.Q569R 1.000 346 0% 195 13.8% 29 27.5% benign(0.143) tolerated(0.26) neutral(0.046) NULL ZNF133 7692 genome.wustl.edu 37 20 18295757 18295757 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001083330.1 +1 validated p.G87C 0.125 139 0.7% 110 18.2% 10 30% benign(0) deleterious(0.04) neutral(0.349) NULL DZANK1 55184 genome.wustl.edu 37 20 18374962 18374962 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000358866 -1 known p.A347V 0.153 83 0% 55 27.3% 1 0% - - - NULL SLC24A3 57419 genome.wustl.edu 37 20 19701695 19701695 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020689.3 +1 validated p.L616I 0.995 211 0.5% 227 23.3% 0 - benign(0.006) tolerated(1) - HMMPfam_Na_Ca_ex SLC24A3 57419 genome.wustl.edu 37 20 19701771 19701771 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020689.3 +1 validated p.C641Y 1.000 221 0% 210 24.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RIN2 54453 genome.wustl.edu 37 20 19970736 19970736 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018993.2 +1 reviewed p.A617S 0.986 89 0% 44 36.4% 7 42.8% benign(0.084) tolerated(0.73) neutral(0.007) superfamily_VPS9 domain (Pfam 02204) NAA20 51126 genome.wustl.edu 37 20 20013241 20013241 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016100.3 +1 validated p.R132K 1.000 247 0% 115 19.1% 173 42.1% benign(0.082) deleterious(0.03) neutral(0.370) superfamily_Acyl-CoA N-acyltransferases (Nat) CRNKL1 51340 genome.wustl.edu 37 20 20022249 20022249 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016652.4 -1 reviewed p.Q556H 0.988 331 0.3% 184 30.4% 26 26.9% probably_damaging(0.961) deleterious(0) deleterious(0.849) HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like CRNKL1 51340 genome.wustl.edu 37 20 20023121 20023121 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016652.4 -1 reviewed p.R499C 1.000 262 0% 158 17.1% 36 38.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_TPR-like C20orf26 26074 genome.wustl.edu 37 20 20168690 20168690 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015585.3 +1 validated p.R501H 0.788 217 0% 134 23.9% 0 - benign(0.097) deleterious(0.03) neutral(0.372) superfamily_Acyl-CoA N-acyltransferases (Nat) RALGAPA2 57186 genome.wustl.edu 37 20 20552121 20552121 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020343.2 -1 validated p.G1046E 1.000 140 0% 29 17.2% 1 0% probably_damaging(1) deleterious(0.05) deleterious(0.845) NULL XRN2 22803 genome.wustl.edu 37 20 21306957 21306957 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012255.3 +1 reviewed p.S39N 1.000 342 0% 150 18% 15 13.3% possibly_damaging(0.501) deleterious(0.01) deleterious(0.573) HMMPfam_XRN_N XRN2 22803 genome.wustl.edu 37 20 21311340 21311340 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012255.3 +1 reviewed p.L191 1.000 296 0% 95 18.9% 12 41.6% - - - HMMPfam_XRN_N CST9 128822 genome.wustl.edu 37 20 23584356 23584356 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008693.2 -1 reviewed p.V91M 0.001 286 0% 161 21.1% 0 - possibly_damaging(0.888) deleterious(0.02) deleterious(0.730) superfamily_SSF54403 CST3 1471 genome.wustl.edu 37 20 23614559 23614559 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000099.2 -1 reviewed p.D145 0.000 144 0% 162 24.7% 1616 24.3% - - - superfamily_SSF54403 SYNDIG1 79953 genome.wustl.edu 37 20 24646036 24646036 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024893.1 +1 provisional p.R225W 1.000 105 0% 79 17.7% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_CD225 CST7 8530 genome.wustl.edu 37 20 24930181 24930181 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003650.3 +1 reviewed p.V36I 0.000 45 0% 38 15.8% 83 0% benign(0.01) tolerated(0.3) neutral(0.029) NULL ACSS1 84532 genome.wustl.edu 37 20 24989966 24989966 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032501.2 -1 reviewed p.Q610H 0.002 277 0% 201 26.9% 20 20% benign(0.186) deleterious(0) neutral(0.462) superfamily_Acetyl-CoA synthetase-like ENTPD6 955 genome.wustl.edu 37 20 25198212 25198212 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433417 +1 known p.P212H 0.979 153 0% 133 25.6% 39 30.7% - - - HMMPfam_GDA1_CD39 PYGB 5834 genome.wustl.edu 37 20 25262699 25262699 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002862.3 +1 reviewed p.E478D 0.996 136 0% 135 25.2% 38 47.3% benign(0) tolerated(0.38) neutral(0.018) HMMPfam_Phosphorylase,superfamily_SSF53756 ABHD12 26090 genome.wustl.edu 37 20 25290081 25290081 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015600.3 -1 validated e7+1 1.000 91 0% 83 21.7% 1 100% - - - - GINS1 9837 genome.wustl.edu 37 20 25394462 25394462 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021067.3 +1 validated p.A38T 1.000 464 0% 262 18.7% 9 66.6% benign(0.001) tolerated(0.32) neutral(0.024) HMMPfam_Psf1 GINS1 9837 genome.wustl.edu 37 20 25398785 25398785 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021067.3 +1 validated p.G95D 1.000 556 0% 264 22.7% 10 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Psf1 NINL 22981 genome.wustl.edu 37 20 25460820 25460820 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025176.4 -1 validated p.L632I 0.981 347 0% 405 21.5% 8 62.5% probably_damaging(1) tolerated(0.13) deleterious(0.752) NULL NINL 22981 genome.wustl.edu 37 20 25470611 25470611 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025176.4 -1 validated p.R499H 0.894 343 0% 307 24.8% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DEFB115 245929 genome.wustl.edu 37 20 29847310 29847310 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037730.1 +1 provisional p.S48P 0.001 330 0% 160 15% 0 - possibly_damaging(0.811) tolerated(0.12) deleterious(0.566) NULL DEFB116 245930 genome.wustl.edu 37 20 29891201 29891201 + Missense_Mutation SNP C C A rs56076812 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037731.1 -1 provisional p.E41D 0.764 613 0% 173 24.3% 0 - possibly_damaging(0.478) tolerated(0.13) neutral(0.410) NULL DEFB124 245937 genome.wustl.edu 37 20 30053325 30053325 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037500.1 -1 provisional p.K67T 0.001 318 0% 343 14.3% 0 - benign(0.276) deleterious(0) deleterious(0.474) NULL HM13 81502 genome.wustl.edu 37 20 30137132 30137132 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178581.1 +1 reviewed p.F221L 1.000 135 0% 109 18.3% 272 39.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PSN,HMMPfam_Peptidase_A22B HM13 81502 genome.wustl.edu 37 20 30154020 30154020 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178581.1 +1 reviewed p.L319H 1.000 246 0.4% 258 22.1% 387 33.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PSN,HMMPfam_Peptidase_A22B HM13 81502 genome.wustl.edu 37 20 30156994 30156994 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178581.1 +1 reviewed p.S418L 0.003 114 0% 122 21.3% 379 33.5% benign(0.011) tolerated(0.06) neutral(0.323) NULL TPX2 22974 genome.wustl.edu 37 20 30347859 30347859 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012112.4 +1 validated e2-1 1.000 615 0% 299 21.7% 0 - - - - - TPX2 22974 genome.wustl.edu 37 20 30371605 30371605 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012112.4 +1 validated p.G432S 1.000 264 0.4% 159 21.4% 36 66.6% probably_damaging(0.995) tolerated(0.1) deleterious(0.744) NULL MYLK2 85366 genome.wustl.edu 37 20 30418652 30418652 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033118.3 +1 reviewed p.G419R 0.979 124 0.8% 127 15% 0 - possibly_damaging(0.496) deleterious(0.01) deleterious(0.571) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase FOXS1 2307 genome.wustl.edu 37 20 30432740 30432740 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004118.3 -1 reviewed p.C202 0.009 70 0% 104 22.1% 6 0% - - - NULL DUSP15 128853 genome.wustl.edu 37 20 30451775 30451775 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080611.3 -1 reviewed p.H66Q 1.000 287 0% 268 18.3% 4 0% possibly_damaging(0.787) deleterious(0.01) deleterious(0.700) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 XKR7 343702 genome.wustl.edu 37 20 30584712 30584712 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011718.1 +1 provisional p.L398F 0.998 61 0% 53 20.8% 0 - probably_damaging(0.999) tolerated(0.09) deleterious(0.787) HMMPfam_XK-related KIF3B 9371 genome.wustl.edu 37 20 30898889 30898889 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004798.2 +1 reviewed p.E437* 1.000 456 0% 151 27.2% 7 14.2% - - - NULL KIF3B 9371 genome.wustl.edu 37 20 30904422 30904422 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004798.2 +1 reviewed p.E533D 1.000 259 0.4% 69 15.9% 5 20% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ASXL1 171023 genome.wustl.edu 37 20 31016037 31016037 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015338.5 +1 reviewed p.S120N 1.000 453 0% 303 27.1% 5 20% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL C20orf112 140688 genome.wustl.edu 37 20 31035538 31035538 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080616.3 -1 validated p.S391N 1.000 92 0% 48 18.8% 9 0% benign(0.002) tolerated(0.23) neutral(0.042) NULL DNMT3B 1789 genome.wustl.edu 37 20 31375041 31375041 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006892.3 +1 reviewed p.L146 0.901 95 0% 52 32.7% 1 100% - - - NULL MAPRE1 22919 genome.wustl.edu 37 20 31413784 31413784 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012325.2 +1 reviewed p.R17 1.000 456 0% 339 11.8% 58 27.5% - - - HMMPfam_CH,superfamily_Calponin-homology domain CH-domain SUN5 140732 genome.wustl.edu 37 20 31573594 31573594 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080675.3 -1 validated p.T282I 1.000 324 0% 231 17.3% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Sad1_UNC BPIFB2 80341 genome.wustl.edu 37 20 31611153 31611153 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025227.1 +1 reviewed p.Y447 0.008 115 0.9% 72 25% 0 - - - - HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI BPIFB6 128859 genome.wustl.edu 37 20 31619523 31619523 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174897.2 +1 validated p.L24 0.997 45 0% 45 15.6% 0 - - - - HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom BPIFB6 128859 genome.wustl.edu 37 20 31623476 31623476 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174897.2 +1 validated p.S192N 0.000 221 0% 154 17.5% 0 - benign(0) tolerated(0.39) neutral(0.016) HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom BPIFA2 140683 genome.wustl.edu 37 20 31767446 31767446 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080574.2 +1 validated p.D228N 0.000 512 0% 396 16.9% 0 - possibly_damaging(0.949) tolerated(0.75) neutral(0.395) superfamily_Bactericidal_perm-incr_a/b_dom NECAB3 63941 genome.wustl.edu 37 20 32247443 32247443 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031232.3 -1 reviewed p.P247S 0.004 18 0% 17 29.4% 1 100% benign(0.087) tolerated(0.72) neutral(0.008) NULL E2F1 1869 genome.wustl.edu 37 20 32265137 32265137 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005225.2 -1 reviewed e6-1 1.000 228 0% 361 23% 1 0% - - - - PXMP4 11264 genome.wustl.edu 37 20 32295732 32295732 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007238.4 -1 validated p.R140H 1.000 79 0% 63 22.2% 13 38.4% benign(0.162) tolerated(0.06) neutral(0.337) HMMPfam_Pmp24 ZNF341 84905 genome.wustl.edu 37 20 32357901 32357901 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032819.3 +1 validated p.C468 0.998 98 0% 51 15.7% 8 25% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CHMP4B 128866 genome.wustl.edu 37 20 32436328 32436328 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_176812.4 +1 reviewed p.I82 0.566 108 0% 77 32.5% 314 41% - - - HMMPfam_Snf7 EIF2S2 8894 genome.wustl.edu 37 20 32693352 32693352 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003908.3 -1 reviewed e2-1 1.000 359 0% 278 14.4% 1 100% - - - - AHCY 191 genome.wustl.edu 37 20 32868861 32868861 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000687.2 -1 reviewed p.K426N 0.998 147 0% 124 15.3% 510 30.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AdoHcyase,superfamily_Formate/glycerate dehydrogenase catalytic domain-like NCOA6 23054 genome.wustl.edu 37 20 33328238 33328238 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014071.2 -1 reviewed p.A1941V 0.986 174 0% 73 23.3% 25 24% benign(0.002) tolerated(0.17) neutral(0.059) NULL GGT7 2686 genome.wustl.edu 37 20 33444545 33444545 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000253380 -1 known p.S106L 0.001 121 0% 93 23.7% 0 - - - - NULL ACSS2 55902 genome.wustl.edu 37 20 33508433 33508433 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018677.3 +1 reviewed p.C355Y 1.000 300 0% 118 9.3% 22 4.5% probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_AMP-binding,superfamily_SSF56801 ACSS2 55902 genome.wustl.edu 37 20 33513537 33513537 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018677.3 +1 reviewed p.T565N 1.000 515 0% 260 23.1% 48 45.8% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_AMP-binding,superfamily_SSF56801 MYH7B 57644 genome.wustl.edu 37 20 33578556 33578556 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020884.3 +1 reviewed p.L707 1.000 230 0% 199 27.1% 0 - - - - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases MYH7B 57644 genome.wustl.edu 37 20 33586130 33586130 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020884.3 +1 reviewed p.E1302D 1.000 93 0% 84 20.2% 0 - probably_damaging(0.988) deleterious(0.05) deleterious(0.783) HMMPfam_Myosin_tail_1,superfamily_Prefoldin TRPC4AP 26133 genome.wustl.edu 37 20 33591288 33591288 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015638.2 -1 validated p.N727 1.000 44 0% 47 31.9% 132 36.3% - - - NULL EDEM2 55741 genome.wustl.edu 37 20 33719538 33719538 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018217.2 -1 validated p.A251T 1.000 102 0% 39 20.5% 31 32.2% probably_damaging(0.973) tolerated(0.39) neutral(0.431) HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases MMP24 10893 genome.wustl.edu 37 20 33859419 33859419 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006690.3 +1 reviewed p.P461S 1.000 105 0% 82 19.5% 2 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120 EIF6 3692 genome.wustl.edu 37 20 33868458 33868458 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002212.2 -1 reviewed p.R123M 1.000 196 0% 208 26.4% 406 46.7% benign(0.005) deleterious(0.01) neutral(0.406) HMMPfam_eIF-6,HMMSmart_SM00654,superfamily_Pentein EIF6 3692 genome.wustl.edu 37 20 33868626 33868626 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002212.2 -1 reviewed p.R67M 1.000 386 0.3% 460 15% 375 37.3% possibly_damaging(0.676) deleterious(0) deleterious(0.685) HMMPfam_eIF-6,HMMSmart_SM00654,superfamily_Pentein FAM83C 128876 genome.wustl.edu 37 20 33879807 33879807 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178468.4 -1 validated p.G101R 0.812 34 0% 39 25.6% 0 - probably_damaging(0.994) deleterious(0.04) deleterious(0.801) HMMPfam_DUF1669 CEP250 11190 genome.wustl.edu 37 20 34090238 34090238 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007186.3 +1 reviewed p.Q1347H 0.613 77 0% 28 21.4% 6 16.6% probably_damaging(0.982) deleterious(0.01) deleterious(0.832) NULL CEP250 11190 genome.wustl.edu 37 20 34091280 34091280 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007186.3 +1 reviewed p.R1695* 0.694 123 0% 85 22.4% 23 4.3% - - - NULL SPAG4 6676 genome.wustl.edu 37 20 34205458 34205458 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003116.1 +1 reviewed p.G142 1.000 54 0% 83 24.1% 13 15.3% - - - NULL RBM12 10137 genome.wustl.edu 37 20 34240546 34240546 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006047.4 -1 reviewed p.A900V 1.000 181 0% 253 27.3% 46 32.6% unknown(0) deleterious(0) - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD RBM39 9584 genome.wustl.edu 37 20 34313054 34313054 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_184234.1 -1 reviewed p.P147H 1.000 290 0% 134 23.1% 72 34.7% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_RNA-binding domain RBD RBM39 9584 genome.wustl.edu 37 20 34319878 34319878 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_184234.1 -1 reviewed p.R94H 1.000 344 0% 253 22.1% 56 35.7% unknown(0) tolerated(0.29) - NULL PHF20 51230 genome.wustl.edu 37 20 34435357 34435357 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016436.4 +1 validated e3+1 1.000 562 0% 228 21.1% 0 - - - - - C20orf152 140894 genome.wustl.edu 37 20 34568467 34568467 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080834.1 +1 predicted p.I110 0.000 121 0% 93 11.8% 1 0% - - - superfamily_cNMP_binding C20orf152 140894 genome.wustl.edu 37 20 34618446 34618446 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080834.1 +1 predicted p.S532I 0.001 391 0% 155 15.5% 5 40% possibly_damaging(0.895) deleterious(0) deleterious(0.797) NULL DLGAP4 22839 genome.wustl.edu 37 20 35061015 35061015 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014902.4 +1 reviewed p.L299I 1.000 36 0% 52 23.1% 0 - probably_damaging(0.974) deleterious(0.03) deleterious(0.780) NULL DLGAP4 22839 genome.wustl.edu 37 20 35068238 35068238 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014902.4 +1 reviewed p.S441 0.973 94 0% 85 21.2% 0 - - - - NULL DLGAP4 22839 genome.wustl.edu 37 20 35152667 35152667 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014902.4 +1 reviewed p.L840I 1.000 221 0% 187 16% 39 7.6% probably_damaging(0.96) tolerated(0.06) deleterious(0.726) HMMPfam_GKAP TGIF2 60436 genome.wustl.edu 37 20 35219735 35219735 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021809.5 +1 reviewed p.A205 0.104 60 0% 60 31.7% 26 38.4% - - - NULL NDRG3 57446 genome.wustl.edu 37 20 35315985 35315985 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032013.2 -1 validated p.F77S 1.000 238 0.4% 130 24.6% 37 37.8% benign(0.001) tolerated(0.25) neutral(0.037) HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases SOGA1 140710 genome.wustl.edu 37 20 35414988 35414988 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000237536 -1 known p.S1629L 0.520 159 0% 121 22.3% 6 33.3% benign(0.052) deleterious(0.01) neutral(0.409) NULL ENSG00000250861 0 genome.wustl.edu 37 20 35423025 35423025 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000509795 +1 novel NULL 0.000 54 0% 61 19.7% 0 - - - - - RBL1 5933 genome.wustl.edu 37 20 35661095 35661095 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002895.2 -1 reviewed p.T785 1.000 512 0% 242 19% 3 0% - - - NULL RBL1 5933 genome.wustl.edu 37 20 35672548 35672548 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002895.2 -1 reviewed p.D571N 0.384 359 0% 244 26.2% 5 60% benign(0.001) tolerated(0.45) neutral(0.012) HMMPfam_RB_A,superfamily_Cyclin-like RBL1 5933 genome.wustl.edu 37 20 35696404 35696404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002895.2 -1 reviewed p.R159Q 1.000 184 0% 354 19.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL C20orf132 140699 genome.wustl.edu 37 20 35748236 35748236 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152503.4 -1 validated p.P746S 0.992 127 0% 119 20.2% 1 100% - - - NULL SRC 6714 genome.wustl.edu 37 20 36014499 36014499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005417.3 +1 reviewed p.A91V 1.000 167 0% 210 24.3% 12 66.6% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain NNAT 4826 genome.wustl.edu 37 20 36151076 36151076 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005386.2 +1 reviewed p.R54M 1.000 36 0% 46 19.6% 0 - possibly_damaging(0.928) deleterious(0) deleterious(0.820) NULL CTNNBL1 56259 genome.wustl.edu 37 20 36488303 36488303 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030877.3 +1 reviewed p.D465 1.000 110 0% 87 28.7% 131 35.8% - - - superfamily_ARM repeat TTI1 9675 genome.wustl.edu 37 20 36625218 36625218 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014657.1 -1 predicted p.T977 0.054 71 0% 55 20% 31 32.2% - - - superfamily_ARM-type_fold TTI1 9675 genome.wustl.edu 37 20 36641644 36641644 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014657.1 -1 predicted p.R192M 0.000 153 0% 138 13% 3 0% possibly_damaging(0.716) tolerated(0.09) deleterious(0.555) superfamily_ARM-type_fold KIAA1755 85449 genome.wustl.edu 37 20 36869662 36869662 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029864.1 -1 predicted p.S291R 0.000 206 0% 152 19.1% 4 0% possibly_damaging(0.531) deleterious(0.02) deleterious(0.562) NULL BPI 671 genome.wustl.edu 37 20 36932611 36932611 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000418004 +1 known p.R83W 0.883 24 0% 20 25% 0 - unknown(0) - - NULL ARHGAP40 343578 genome.wustl.edu 37 20 37267443 37267443 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373345 +1 known p.G308C 1.000 297 0% 179 24% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP ARHGAP40 343578 genome.wustl.edu 37 20 37272389 37272389 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373345 +1 known p.H416Y 0.572 111 0% 124 19.4% 0 - benign(0.304) deleterious(0.01) deleterious(0.500) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP ARHGAP40 343578 genome.wustl.edu 37 20 37278420 37278420 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000373345 +1 known p.D600Y 1.000 552 0% 316 21.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ACTR5 79913 genome.wustl.edu 37 20 37378856 37378856 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024855.3 +1 validated p.T193 0.213 426 0% 489 23.3% 13 23% - - - HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 PPP1R16B 26051 genome.wustl.edu 37 20 37547179 37547179 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015568.2 +1 reviewed p.T525I 1.000 142 0% 94 22.3% 1 0% probably_damaging(0.964) deleterious(0.04) deleterious(0.755) NULL FAM83D 81610 genome.wustl.edu 37 20 37570769 37570769 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030919.2 +1 validated p.K247N 1.000 298 0% 167 21% 11 72.7% probably_damaging(0.965) tolerated(0.11) deleterious(0.678) HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease PLCG1 5335 genome.wustl.edu 37 20 39792069 39792069 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002660.2 +1 reviewed p.L281I 1.000 67 1.5% 61 23% 14 57.1% probably_damaging(0.981) tolerated(0.52) neutral(0.434) superfamily_SSF47473 PLCG1 5335 genome.wustl.edu 37 20 39794302 39794302 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002660.2 +1 reviewed p.H545 1.000 143 0% 75 29.3% 26 30.7% - - - HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550 PLCG1 5335 genome.wustl.edu 37 20 39794454 39794454 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002660.2 +1 reviewed p.T596M 1.000 49 0% 33 18.2% 21 28.5% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_SH2,HMMSmart_SH2,HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550 CHD6 84181 genome.wustl.edu 37 20 40033675 40033675 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032221.3 -1 reviewed p.A2569V 0.007 152 0.7% 131 19.1% 17 23.5% benign(0) tolerated(0.38) neutral(0.018) NULL CHD6 84181 genome.wustl.edu 37 20 40042150 40042150 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032221.3 -1 reviewed p.V2315 0.996 49 0% 41 17.1% 10 30% - - - NULL CHD6 84181 genome.wustl.edu 37 20 40050388 40050388 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032221.3 -1 reviewed p.L1629 0.974 224 0% 95 13.7% 4 0% - - - NULL CHD6 84181 genome.wustl.edu 37 20 40068712 40068712 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032221.3 -1 reviewed p.V1312D 0.998 251 0% 86 16.3% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SRSF6 6431 genome.wustl.edu 37 20 42088728 42088728 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006275.5 +1 reviewed p.T146I 1.000 661 0% 678 21.5% 99 38.3% benign(0.238) tolerated(0.11) neutral(0.296) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD LOC100287002 100287002 genome.wustl.edu 37 20 42089338 42089338 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343704.1 -1 model p.D306G 0.993 242 0% 210 15.2% 0 - - - - NULL L3MBTL1 26013 genome.wustl.edu 37 20 42168802 42168802 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015478.5 +1 reviewed p.D639N 0.766 118 0% 81 16% 3 100% possibly_damaging(0.604) tolerated(0.24) neutral(0.247) NULL MYBL2 4605 genome.wustl.edu 37 20 42320917 42320917 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002466.2 +1 reviewed p.E207D 1.000 68 0% 34 17.6% 62 24.1% benign(0.009) tolerated(0.61) neutral(0.005) NULL STK4 6789 genome.wustl.edu 37 20 43610583 43610583 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006282.2 +1 reviewed p.T120M 1.000 521 0% 306 24.5% 5 80% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SEMG2 6407 genome.wustl.edu 37 20 43850490 43850490 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003008.2 +1 reviewed p.I73V 0.000 495 0.2% 243 21.8% 0 - benign(0) tolerated(1) - HMMPfam_Semenogelin PIGT 51604 genome.wustl.edu 37 20 44045191 44045191 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015937.4 +1 reviewed p.G74 0.989 64 0% 104 22.1% 52 44.2% - - - HMMPfam_Gpi16 PIGT 51604 genome.wustl.edu 37 20 44047897 44047897 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000372689 +1 known p.S8 0.000 72 0% 81 21% 0 - - - - HMMPfam_Gpi16 PIGT 51604 genome.wustl.edu 37 20 44053136 44053136 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015937.4 +1 reviewed p.S467 1.000 124 0% 132 25% 189 35.9% - - - HMMPfam_Gpi16 DNTTIP1 116092 genome.wustl.edu 37 20 44431987 44431987 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456939 +1 known p.L142M 1.000 233 0% 143 23.8% 63 42.8% - - - NULL TNNC2 7125 genome.wustl.edu 37 20 44452767 44452767 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003279.2 -1 reviewed e5-1 1.000 89 0% 83 28.9% 0 - - - - - ZSWIM1 90204 genome.wustl.edu 37 20 44511971 44511971 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080603.4 +1 validated p.S247N 0.973 44 0% 32 34.4% 16 62.5% probably_damaging(0.995) tolerated(0.1) deleterious(0.744) NULL SPATA25 128497 genome.wustl.edu 37 20 44516213 44516213 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080608.3 -1 validated p.T6N 1.000 175 0% 193 23.8% 0 - benign(0.013) deleterious(0.03) neutral(0.365) NULL CTSA 5476 genome.wustl.edu 37 20 44521484 44521484 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000308.2 +1 reviewed p.V207M 0.026 167 0% 189 22.2% 182 41.7% benign(0.012) tolerated(0.06) neutral(0.323) HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases CTSA 5476 genome.wustl.edu 37 20 44525655 44525655 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000308.2 +1 reviewed p.Q398H 1.000 108 0% 79 24.1% 343 31.4% benign(0.322) tolerated(0.17) neutral(0.160) HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases PLTP 5360 genome.wustl.edu 37 20 44538234 44538234 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006227.2 -1 reviewed p.A136T 0.000 64 1.6% 55 30.9% 176 25% benign(0) tolerated(0.34) neutral(0.023) HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI PCIF1 63935 genome.wustl.edu 37 20 44572322 44572322 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022104.3 +1 validated p.S308I 1.000 61 1.6% 38 23.7% 38 36.8% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL PCIF1 63935 genome.wustl.edu 37 20 44574947 44574947 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022104.3 +1 validated p.A513T 1.000 122 0% 145 20% 108 41.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ZNF335 63925 genome.wustl.edu 37 20 44586251 44586251 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022095.3 -1 reviewed p.R806W 1.000 66 0% 69 23.2% 13 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC12A5 57468 genome.wustl.edu 37 20 44663639 44663639 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134771.1 +1 reviewed p.E58D 1.000 431 0% 339 28.6% 0 - benign(0.001) tolerated(0.32) neutral(0.024) NULL SLC12A5 57468 genome.wustl.edu 37 20 44680391 44680391 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001134771.1 +1 reviewed p.G776 1.000 152 0% 192 12.5% 0 - - - - NULL NCOA5 57727 genome.wustl.edu 37 20 44708029 44708029 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020967.2 -1 reviewed p.R12Q 1.000 608 0% 441 20.6% 5 60% unknown(0) deleterious(0.01) - NULL CD40 958 genome.wustl.edu 37 20 44757025 44757025 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000372278 +1 known p.R10K 0.000 174 0% 159 25.2% 0 - unknown(0) - - NULL CDH22 64405 genome.wustl.edu 37 20 44845580 44845580 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021248.1 -1 reviewed p.Y241 0.992 58 0% 58 31% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like SLC35C2 51006 genome.wustl.edu 37 20 44983597 44983597 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015945.10 -1 reviewed p.Q195H 1.000 75 0% 56 21.4% 63 34.9% benign(0.002) tolerated(0.76) neutral(0.001) HMMPfam_TPT SLC35C2 51006 genome.wustl.edu 37 20 44986386 44986386 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015945.10 -1 reviewed p.T49 0.463 162 0% 123 23.6% 36 19.4% - - - NULL ZNF334 55713 genome.wustl.edu 37 20 45130187 45130187 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018102.3 -1 validated p.E597D 1.000 325 0% 193 19.7% 2 0% possibly_damaging(0.833) deleterious(0.02) deleterious(0.701) superfamily_SSF57667 ZNF334 55713 genome.wustl.edu 37 20 45133370 45133370 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018102.3 -1 validated p.S11A 0.159 286 0% 216 22.2% 0 - benign(0.097) deleterious(0.01) neutral(0.413) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box SLC13A3 64849 genome.wustl.edu 37 20 45192082 45192082 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022829.4 -1 reviewed p.A535T 0.999 79 0% 62 16.1% 0 - benign(0.047) tolerated(0.06) neutral(0.326) HMMPfam_Na_sulph_symp SLC13A3 64849 genome.wustl.edu 37 20 45192104 45192104 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022829.4 -1 reviewed p.T527 0.614 77 0% 56 21.4% 1 0% - - - HMMPfam_Na_sulph_symp SLC2A10 81031 genome.wustl.edu 37 20 45354077 45354077 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030777.3 +1 reviewed p.V134 0.991 54 0% 49 22.4% 1 0% - - - HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter EYA2 2139 genome.wustl.edu 37 20 45725779 45725779 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005244.4 +1 reviewed p.T287M 1.000 557 0% 212 25.9% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hydrolase NCOA3 8202 genome.wustl.edu 37 20 46277770 46277770 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181659.2 +1 reviewed p.A1190S 1.000 270 0% 126 32.5% 3 0% benign(0.389) tolerated(0.19) neutral(0.174) NULL PREX1 57580 genome.wustl.edu 37 20 47246159 47246159 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020820.3 -1 reviewed p.L1532 1.000 81 0% 101 16.8% 38 2.6% - - - NULL PREX1 57580 genome.wustl.edu 37 20 47249138 47249138 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020820.3 -1 reviewed p.A1436V 0.958 68 0% 66 16.7% 23 0% benign(0.001) deleterious(0) neutral(0.445) NULL PREX1 57580 genome.wustl.edu 37 20 47274752 47274752 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020820.3 -1 reviewed p.E632D 1.000 193 0.5% 126 15.1% 10 0% benign(0.001) tolerated(0.22) neutral(0.042) "superfamily_PDZ domain-like,superfamily_""Winged helix"" DNA-binding domain" CSE1L 1434 genome.wustl.edu 37 20 47691917 47691917 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001316.2 +1 reviewed p.G399* 1.000 363 0% 184 22.3% 21 0% - - - HMMPfam_Cse1,superfamily_ARM repeat CSE1L 1434 genome.wustl.edu 37 20 47701839 47701839 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001316.2 +1 reviewed p.A547T 1.000 310 0% 93 23.7% 30 86.6% benign(0.011) tolerated(0.24) neutral(0.038) HMMPfam_CAS_CSE1,superfamily_ARM repeat ZNFX1 57169 genome.wustl.edu 37 20 47865195 47865195 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021035.2 -1 validated p.R1456C 1.000 108 0% 31 22.6% 15 46.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-NF-X1 ZNFX1 57169 genome.wustl.edu 37 20 47887529 47887529 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021035.2 -1 validated p.P274S 1.000 303 0.3% 224 12.9% 2 0% possibly_damaging(0.643) tolerated(0.41) neutral(0.240) NULL KCNB1 3745 genome.wustl.edu 37 20 48098666 48098666 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004975.2 -1 reviewed p.E118* 1.000 123 0% 161 16.1% 0 - - - - HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold SLC9A8 23315 genome.wustl.edu 37 20 48431694 48431694 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015266.1 +1 validated p.G59V 1.000 175 0% 223 23.3% 2 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL RNF114 55905 genome.wustl.edu 37 20 48558140 48558140 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000434441 +1 known e2+1 0.982 181 0% 148 24.3% 101 37.6% benign(0.084) tolerated(0.31) neutral(0.033) - FAM65C 140876 genome.wustl.edu 37 20 49211099 49211099 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080829.2 -1 predicted p.L731 0.998 80 0% 98 25.5% 2 0% - - - NULL FAM65C 140876 genome.wustl.edu 37 20 49211905 49211905 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080829.2 -1 predicted e15+1 1.000 90 0% 108 18.5% 0 - - - - - FAM65C 140876 genome.wustl.edu 37 20 49221269 49221269 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080829.2 -1 predicted p.T329 0.010 123 0% 113 23.9% 1 0% - - - NULL ADNP 23394 genome.wustl.edu 37 20 49508242 49508242 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015339.2 -1 reviewed p.S1003 1.000 201 0% 73 24.7% 84 45.2% - - - NULL ADNP 23394 genome.wustl.edu 37 20 49508814 49508814 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015339.2 -1 reviewed p.R813C 1.000 417 0% 170 24.1% 35 28.5% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like ADNP 23394 genome.wustl.edu 37 20 49510335 49510335 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015339.2 -1 reviewed p.R306* 1.000 440 0% 138 18.8% 29 51.7% - - - NULL ADNP 23394 genome.wustl.edu 37 20 49510613 49510613 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015339.2 -1 reviewed p.S213L 0.996 333 0% 90 22.2% 22 40.9% possibly_damaging(0.685) tolerated(0.22) neutral(0.286) NULL ATP9A 10079 genome.wustl.edu 37 20 50217858 50217858 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006045.1 -1 validated p.F1012 1.000 209 0% 100 22% 24 45.8% - - - NULL ATP9A 10079 genome.wustl.edu 37 20 50226673 50226673 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006045.1 -1 validated p.S868Y 1.000 443 0.2% 199 23.1% 23 47.8% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL ATP9A 10079 genome.wustl.edu 37 20 50273519 50273519 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006045.1 -1 validated p.Y488 0.987 126 0% 98 12.2% 14 14.2% - - - HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N ATP9A 10079 genome.wustl.edu 37 20 50290753 50290753 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006045.1 -1 validated p.G326C 1.000 183 0% 84 31% 18 61.1% probably_damaging(0.973) deleterious(0.01) deleterious(0.821) NULL SALL4 57167 genome.wustl.edu 37 20 50405492 50405492 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020436.3 -1 reviewed p.A884T 1.000 137 0% 113 17.7% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 SALL4 57167 genome.wustl.edu 37 20 50406872 50406872 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020436.3 -1 reviewed p.S717L 0.007 83 0% 74 25.7% 1 0% benign(0.001) tolerated(0.29) neutral(0.029) NULL TSHZ2 128553 genome.wustl.edu 37 20 51872037 51872037 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173485.4 +1 validated p.C680 0.018 44 0% 32 37.5% 2 50% - - - NULL ZNF217 7764 genome.wustl.edu 37 20 52193534 52193534 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006526.2 -1 validated p.A590V 0.019 460 0% 308 23.7% 23 65.2% benign(0.059) deleterious(0.03) neutral(0.368) NULL ZNF217 7764 genome.wustl.edu 37 20 52198399 52198399 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006526.2 -1 validated p.D323N 0.996 285 0% 309 20.7% 17 35.2% probably_damaging(1) tolerated(0.73) deleterious(0.501) NULL ZNF217 7764 genome.wustl.edu 37 20 52199205 52199205 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006526.2 -1 validated p.K54R 0.008 258 0% 215 24.7% 14 28.5% benign(0.092) tolerated(0.16) neutral(0.067) NULL LOC100287442 100287442 genome.wustl.edu 37 20 52789489 52789489 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343711.1 +1 model p.G115C 1.000 89 0% 111 25.2% 0 - - - - NULL DOK5 55816 genome.wustl.edu 37 20 53208185 53208185 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018431.3 +1 reviewed p.P147H 1.000 482 0% 248 14.1% 1 0% probably_damaging(0.959) deleterious(0.01) deleterious(0.808) HMMPfam_IRS,HMMSmart_SM00310,superfamily_PH domain-like MC3R 4159 genome.wustl.edu 37 20 54823914 54823914 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019888.3 +1 reviewed p.C5* 0.037 167 0% 87 28.7% 0 - - - - superfamily_Family A G protein-coupled receptor-like MC3R 4159 genome.wustl.edu 37 20 54824256 54824256 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019888.3 +1 reviewed p.I119 1.000 179 0% 82 22% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MC3R 4159 genome.wustl.edu 37 20 54824303 54824303 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019888.3 +1 reviewed p.L135P 1.000 197 0% 82 17.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like CSTF1 1477 genome.wustl.edu 37 20 54972476 54972476 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001033521.1 +1 reviewed p.A128D 1.000 253 0% 146 23.3% 18 16.6% benign(0.011) deleterious(0.02) neutral(0.384) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 CASS4 57091 genome.wustl.edu 37 20 55027676 55027676 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020356.3 +1 validated p.S482P 0.967 212 0% 142 17.6% 2 0% benign(0.335) deleterious(0.02) deleterious(0.488) HMMPfam_Serine_rich C20orf43 51507 genome.wustl.edu 37 20 55052040 55052040 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016407.3 +1 validated e4-1 1.000 172 0% 119 21% 1 0% - - - - GCNT7 140687 genome.wustl.edu 37 20 55071931 55071931 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000243913 -1 known p.S123N 0.001 253 0% 163 20.9% 0 - benign(0.055) tolerated(0.43) neutral(0.017) HMMPfam_Branch FAM209A 200232 genome.wustl.edu 37 20 55100100 55100100 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012971.3 +1 validated p.S79I 0.000 504 0% 208 26.9% 0 - possibly_damaging(0.861) tolerated(0.05) deleterious(0.678) NULL TFAP2C 7022 genome.wustl.edu 37 20 55208488 55208488 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003222.3 +1 reviewed p.E222 0.998 212 0% 244 25.4% 1 0% - - - HMMPfam_TF_AP-2 RBM38 55544 genome.wustl.edu 37 20 55967831 55967831 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017495.4 +1 validated p.T120M 1.000 88 0% 105 18.1% 56 32.1% benign(0.179) tolerated(0.15) neutral(0.258) NULL CTCFL 140690 genome.wustl.edu 37 20 56098172 56098172 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080618.2 -1 reviewed p.A236T 0.000 709 0% 750 24.4% 0 - benign(0.003) tolerated(0.63) neutral(0.004) NULL ZBP1 81030 genome.wustl.edu 37 20 56188380 56188380 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030776.2 -1 validated p.S170Y 0.001 312 0.3% 247 25.5% 10 0% possibly_damaging(0.815) tolerated(0.09) deleterious(0.604) NULL ZBP1 81030 genome.wustl.edu 37 20 56195325 56195325 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030776.2 -1 validated p.G9 0.000 88 0% 65 15.4% 11 0% - - - HMMSmart_SM00550 PMEPA1 56937 genome.wustl.edu 37 20 56227145 56227145 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020182.3 -1 validated p.S276 1.000 61 0% 121 18.2% 12 50% - - - NULL PMEPA1 56937 genome.wustl.edu 37 20 56234715 56234715 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020182.3 -1 validated p.V50M 1.000 55 0% 69 17.4% 13 30.7% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL ANKRD60 140731 genome.wustl.edu 37 20 56793600 56793600 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001134442.3 -1 model p.R330M 0.000 256 0% 214 18.2% 0 - possibly_damaging(0.685) deleterious(0) deleterious(0.689) NULL ANKRD60 140731 genome.wustl.edu 37 20 56796476 56796476 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001134442.3 -1 model p.W215* 0.972 234 0% 266 24.8% 0 - - - - superfamily_ANK NPEPL1 79716 genome.wustl.edu 37 20 57289140 57289140 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024663.3 +1 validated p.N431 1.000 39 0% 38 10.5% 89 20.2% - - - HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases GNAS 2778 genome.wustl.edu 37 20 57430345 57430345 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000450130 +1 known p.R62* 0.020 65 0% 77 28.6% 0 - probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_G-alpha,HMMSmart_SM00275 GNAS 2778 genome.wustl.edu 37 20 57485819 57485819 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080425.2 +1 reviewed p.R1017C 1.000 183 0% 121 14.9% 3019 23.3% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases TH1L 51497 genome.wustl.edu 37 20 57569246 57569246 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198976.1 +1 reviewed p.G564C 0.998 276 0.7% 203 20.2% 83 36.1% probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_TH1 CTSZ 1522 genome.wustl.edu 37 20 57571843 57571843 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001336.3 -1 reviewed p.A218T 1.000 283 0% 269 20.1% 481 13.9% benign(0.044) deleterious(0.01) neutral(0.408) HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases ATP5E 514 genome.wustl.edu 37 20 57605477 57605477 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001977.1 -1 reviewed p.R14* 1.000 312 0% 441 10.9% 1135 7.3% - - - HMMPfam_ATP-synt_Eps,superfamily_ATP_synth_E SLMO2 51012 genome.wustl.edu 37 20 57613522 57613522 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016045.2 -1 validated p.S67Y 1.000 151 0% 216 16.2% 47 25.5% benign(0.223) deleterious(0.04) neutral(0.371) HMMPfam_PRELI ZNF831 128611 genome.wustl.edu 37 20 57829698 57829698 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178457.1 +1 provisional p.S1645F 0.026 101 0% 52 15.4% 2 0% possibly_damaging(0.745) deleterious(0) deleterious(0.718) NULL ZNF831 128611 genome.wustl.edu 37 20 57829790 57829790 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178457.1 +1 provisional p.E1676* 0.996 45 0% 19 42.1% 1 0% - - - NULL PPP1R3D 5509 genome.wustl.edu 37 20 58514233 58514233 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006242.3 -1 reviewed p.R252C 0.000 18 0% 34 29.4% 2 0% possibly_damaging(0.848) tolerated(0.06) deleterious(0.648) HMMPfam_CBM_21 FAM217B 63939 genome.wustl.edu 37 20 58519757 58519757 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022106.1 +1 predicted p.H253 0.000 116 0% 107 15.9% 3 66.6% - - - NULL C20orf197 284756 genome.wustl.edu 37 20 58645713 58645713 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173644.1 +1 predicted p.G44D 0.000 225 0% 116 21.6% 0 - benign(0.003) - - NULL CDH4 1002 genome.wustl.edu 37 20 60318751 60318751 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001794.2 +1 reviewed p.T101M 0.982 45 0% 35 20% 0 - benign(0.002) tolerated(0.15) neutral(0.241) HMMPfam_Cadherin_pro,superfamily_Cadherin CDH4 1002 genome.wustl.edu 37 20 60448926 60448926 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001794.2 +1 reviewed p.I340 0.690 87 0% 62 12.9% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin TAF4 6874 genome.wustl.edu 37 20 60572702 60572702 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003185.3 -1 reviewed p.Q998H 1.000 379 0% 375 24.8% 26 42.3% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_TAF4 LSM14B 149986 genome.wustl.edu 37 20 60701386 60701386 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144703.2 +1 validated p.S106 0.980 179 0.6% 140 16.4% 48 25% - - - NULL LSM14B 149986 genome.wustl.edu 37 20 60704910 60704910 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144703.2 +1 validated p.A166D 0.007 89 0% 124 16.9% 34 38.2% benign(0.19) deleterious(0.01) neutral(0.424) NULL LSM14B 149986 genome.wustl.edu 37 20 60705000 60705000 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144703.2 +1 validated p.T196M 0.251 65 0% 83 26.5% 42 38% possibly_damaging(0.823) deleterious(0.03) deleterious(0.676) NULL LSM14B 149986 genome.wustl.edu 37 20 60706415 60706415 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144703.2 +1 validated p.D280G 1.000 147 0% 186 21% 25 52% possibly_damaging(0.675) deleterious(0) deleterious(0.684) NULL GTPBP5 26164 genome.wustl.edu 37 20 60776052 60776052 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015666.3 +1 validated p.Q380 1.000 57 0% 66 12.1% 12 33.3% - - - superfamily_SSF52540 ADRM1 11047 genome.wustl.edu 37 20 60883228 60883228 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007002.2 +1 reviewed p.F336 1.000 63 0% 69 11.6% 428 16.1% - - - HMMPfam_ARM_1 LAMA5 3911 genome.wustl.edu 37 20 60893610 60893610 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005560.3 -1 reviewed p.G2380V 0.003 47 2.1% 29 44.8% 23 56.5% possibly_damaging(0.513) tolerated(0.06) deleterious(0.495) HMMPfam_Laminin_I LAMA5 3911 genome.wustl.edu 37 20 60900480 60900480 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005560.3 -1 reviewed p.F1807 0.999 41 0% 38 18.4% 20 45% - - - HMMPfam_Laminin_B,HMMSmart_SM00281 LAMA5 3911 genome.wustl.edu 37 20 60913622 60913622 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005560.3 -1 reviewed p.R507L 1.000 70 0% 59 16.9% 9 22.2% probably_damaging(0.988) tolerated(0.2) deleterious(0.486) HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin LAMA5 3911 genome.wustl.edu 37 20 60921564 60921564 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005560.3 -1 reviewed p.R427H 0.027 132 0% 85 23.5% 10 20% benign(0.074) tolerated(0.14) neutral(0.255) PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin GATA5 140628 genome.wustl.edu 37 20 61040046 61040046 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080473.4 -1 reviewed p.A347D 0.497 32 0% 24 33.3% 1 100% benign(0.148) tolerated(0.16) neutral(0.072) NULL C20orf20 55257 genome.wustl.edu 37 20 61430915 61430915 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018270.4 +1 validated p.R179C 1.000 129 0% 136 29.4% 25 28% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL C20orf20 55257 genome.wustl.edu 37 20 61430980 61430980 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018270.4 +1 validated p.K200 1.000 101 0% 89 28.1% 42 50% - - - NULL OGFR 11054 genome.wustl.edu 37 20 61439547 61439547 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000370461 +1 known p.Q11H 0.016 95 1.1% 118 28% 0 - benign(0.253) deleterious(0.04) neutral(0.375) NULL OGFR 11054 genome.wustl.edu 37 20 61444486 61444486 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007346.2 +1 reviewed p.R507* 0.001 51 0% 35 28.6% 90 32.2% - - - NULL COL9A3 1299 genome.wustl.edu 37 20 61452872 61452872 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001853.3 +1 reviewed p.P120H 1.000 37 0% 104 17.3% 0 - unknown(0) deleterious(0.03) - NULL COL9A3 1299 genome.wustl.edu 37 20 61467851 61467851 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001853.3 +1 reviewed p.R524C 1.000 84 0% 85 29.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TCFL5 10732 genome.wustl.edu 37 20 61477349 61477349 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000217162 -1 known p.L453I 0.005 94 0% 75 22.7% 0 - unknown(0) - - NULL DIDO1 11083 genome.wustl.edu 37 20 61512118 61512118 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033081.1 -1 reviewed p.G1730 0.002 50 0% 47 14.9% 6 16.6% - - - NULL DIDO1 11083 genome.wustl.edu 37 20 61513427 61513427 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033081.1 -1 reviewed p.A1294E 0.000 105 0% 149 27.5% 2 0% possibly_damaging(0.507) deleterious(0.02) deleterious(0.552) NULL DIDO1 11083 genome.wustl.edu 37 20 61528135 61528135 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033081.1 -1 reviewed p.S601F 0.060 31 0% 40 22.5% 6 33.3% possibly_damaging(0.858) deleterious(0.04) deleterious(0.680) NULL DIDO1 11083 genome.wustl.edu 37 20 61537259 61537259 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033081.1 -1 reviewed p.S523L 0.984 164 0% 148 23.6% 37 43.2% possibly_damaging(0.947) tolerated(0.05) deleterious(0.736) NULL YTHDF1 54915 genome.wustl.edu 37 20 61834119 61834119 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017798.3 -1 validated p.V391 1.000 51 0% 74 24.3% 30 40% - - - NULL ARFGAP1 55738 genome.wustl.edu 37 20 61906986 61906986 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_175609.1 +1 reviewed p.E18D 1.000 159 0% 207 21.3% 11 27.2% benign(0) tolerated(0.62) neutral(0.004) HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain COL20A1 57642 genome.wustl.edu 37 20 61936898 61936898 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020882.2 +1 validated p.R108Q 0.879 75 0% 53 32.1% 0 - benign(0.123) tolerated(0.58) neutral(0.015) HMMPfam_fn3 COL20A1 57642 genome.wustl.edu 37 20 61937321 61937321 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020882.2 +1 validated p.G142 0.070 66 0% 58 24.1% 0 - - - - NULL COL20A1 57642 genome.wustl.edu 37 20 61944277 61944277 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020882.2 +1 validated p.K689N 0.506 55 0% 63 17.5% 0 - probably_damaging(0.959) tolerated(0.26) neutral(0.436) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CHRNA4 1137 genome.wustl.edu 37 20 61987368 61987368 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000370258 -1 known p.P10H 1.000 88 0% 105 18.1% 0 - unknown(0) - - NULL EEF1A2 1917 genome.wustl.edu 37 20 62124599 62124599 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001958.2 -1 reviewed p.G221 0.968 31 0% 43 27.9% 0 - - - - HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases PTK6 5753 genome.wustl.edu 37 20 62164012 62164012 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005975.2 -1 reviewed p.Q233 0.000 100 0% 108 36.1% 3 66.6% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like PRIC285 85441 genome.wustl.edu 37 20 62200851 62200851 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037335.2 -1 reviewed p.F246 0.003 24 0% 37 16.2% 4 25% - - - NULL ARFRP1 10139 genome.wustl.edu 37 20 62333493 62333493 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003224.3 -1 reviewed p.A114V 0.993 74 0% 120 21.7% 62 37% benign(0.034) tolerated(0.35) neutral(0.022) HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases ZBTB46 140685 genome.wustl.edu 37 20 62421318 62421318 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025224.2 -1 provisional p.Q265* 1.000 102 0% 106 22.6% 3 0% - - - NULL ZBTB46 140685 genome.wustl.edu 37 20 62421696 62421696 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025224.2 -1 provisional p.D139Y 0.989 35 0% 46 30.4% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ZBTB46 140685 genome.wustl.edu 37 20 62421748 62421748 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025224.2 -1 provisional p.C121 1.000 31 0% 33 33.3% 1 0% - - - HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB TPD52L2 7165 genome.wustl.edu 37 20 62505045 62505045 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_199360.1 +1 validated p.R64S 1.000 104 0% 106 21.7% 81 43.2% probably_damaging(0.998) tolerated(0.26) deleterious(0.508) HMMPfam_TPD52 SAMD10 140700 genome.wustl.edu 37 20 62608659 62608659 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080621.4 -1 validated p.T64 0.871 273 0.7% 221 25.3% 11 45.4% - - - NULL TCEA2 6919 genome.wustl.edu 37 20 62701868 62701868 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003195.4 +1 reviewed p.E233D 1.000 54 0% 50 22% 81 28.3% probably_damaging(0.995) deleterious(0.05) deleterious(0.803) HMMPfam_TFIIS_M,HMMSmart_SM00510 RGS19 10287 genome.wustl.edu 37 20 62705881 62705881 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005873.2 -1 reviewed p.R56W 0.622 8 0.000 8 0.500 32 28.1% probably_damaging(0.972) deleterious(0) deleterious(0.859) NULL OPRL1 4987 genome.wustl.edu 37 20 62729951 62729951 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000913.3 +1 reviewed p.C304 1.000 76 0% 64 18.8% 1 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MYT1 4661 genome.wustl.edu 37 20 62839127 62839127 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004535.2 +1 reviewed p.G193D 0.000 84 0% 86 23.3% 0 - benign(0.014) tolerated(0.31) neutral(0.028) NULL LIPI 149998 genome.wustl.edu 37 21 15481394 15481394 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198996.2 -1 validated p.L456F 0.815 391 0% 155 18.7% 0 - possibly_damaging(0.952) deleterious(0.01) deleterious(0.801) NULL RBM11 54033 genome.wustl.edu 37 21 15591978 15591978 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144770.3 +1 validated p.S64Y 1.000 242 0% 346 21.7% 0 - possibly_damaging(0.952) deleterious(0) deleterious(0.840) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD HSPA13 6782 genome.wustl.edu 37 21 15746314 15746314 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006948.4 -1 reviewed p.R347H 0.002 247 0% 224 20.1% 9 33.3% benign(0.002) tolerated(0.1) neutral(0.286) superfamily_Actin-like ATPase domain HSPA13 6782 genome.wustl.edu 37 21 15753598 15753598 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006948.4 -1 reviewed p.D98N 1.000 422 0% 427 11.5% 6 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_HSP70,superfamily_Actin-like ATPase domain HSPA13 6782 genome.wustl.edu 37 21 15753823 15753823 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006948.4 -1 reviewed p.Q23* 1.000 149 0% 156 28.2% 6 16.6% - - - NULL NRIP1 8204 genome.wustl.edu 37 21 16337839 16337839 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003489.3 -1 reviewed p.G892V 0.990 192 0% 104 13.5% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NRIP1 8204 genome.wustl.edu 37 21 16339634 16339634 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003489.3 -1 reviewed p.A294S 1.000 277 0% 101 29.7% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL USP25 29761 genome.wustl.edu 37 21 17236657 17236657 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013396.3 +1 validated p.R803H 1.000 228 0% 146 27.4% 22 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CXADR 1525 genome.wustl.edu 37 21 18924066 18924066 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001338.3 +1 reviewed e3-1 1.000 255 0% 128 22.7% 0 - - - - - CXADR 1525 genome.wustl.edu 37 21 18933714 18933714 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001338.3 +1 reviewed p.A251 0.001 236 0% 77 18.2% 8 87.5% - - - NULL NCAM2 4685 genome.wustl.edu 37 21 22664456 22664456 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004540.2 +1 reviewed p.Q172K 1.000 564 0% 79 13.9% 0 - probably_damaging(0.963) tolerated(0.22) neutral(0.448) HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 NCAM2 4685 genome.wustl.edu 37 21 22707873 22707873 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004540.2 +1 reviewed p.S262 1.000 160 0% 41 17.1% 0 - - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 NCAM2 4685 genome.wustl.edu 37 21 22746191 22746191 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004540.2 +1 reviewed p.D351 0.370 243 0.4% 41 22% 0 - - - - HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 JAM2 58494 genome.wustl.edu 37 21 27056202 27056202 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021219.2 +1 reviewed p.K25N 1.000 344 0% 267 22.5% 1 0% probably_damaging(0.963) tolerated(0.11) deleterious(0.677) NULL APP 351 genome.wustl.edu 37 21 27264143 27264143 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000484.3 -1 reviewed p.A701V 1.000 347 0% 101 21.8% 532 39.6% benign(0.242) deleterious(0) deleterious(0.469) HMMPfam_Beta-APP APP 351 genome.wustl.edu 37 21 27327983 27327983 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000448850 -1 known p.A418T 0.641 604 0.2% 187 18.2% 409 22.9% - - - superfamily_CAPPD an extracellular domain of amyloid beta A4 protein CYYR1 116159 genome.wustl.edu 37 21 27938676 27938676 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052954.2 -1 validated p.A29T 1.000 282 0% 257 24.1% 3 0% probably_damaging(0.959) deleterious(0) deleterious(0.847) NULL ADAMTS1 9510 genome.wustl.edu 37 21 28214875 28214875 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006988.3 -1 reviewed p.S287L 1.000 121 0.8% 139 27.3% 11 45.4% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Reprolysin,superfamily_SSF55486 LTN1 26046 genome.wustl.edu 37 21 30316192 30316192 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015565.2 -1 validated p.Q1339H 1.000 303 0% 109 17.4% 2 100% benign(0) tolerated(0.07) neutral(0.319) NULL LTN1 26046 genome.wustl.edu 37 21 30359102 30359102 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015565.2 -1 validated p.R66* 1.000 284 0% 216 24.1% 0 - - - - superfamily_ARM repeat LTN1 26046 genome.wustl.edu 37 21 30359208 30359208 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000452100 -1 known p.N53Y 0.987 120 0% 87 19.5% 1 0% - - - NULL USP16 10600 genome.wustl.edu 37 21 30409667 30409667 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032410.1 +1 reviewed p.E173D 0.990 298 0.3% 170 16.5% 5 0% probably_damaging(0.98) tolerated(0.16) deleterious(0.483) NULL USP16 10600 genome.wustl.edu 37 21 30426476 30426476 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032410.1 +1 reviewed p.A814S 1.000 210 0% 93 15.1% 52 19.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UCH,superfamily_Cysteine proteinases CCT8 10694 genome.wustl.edu 37 21 30434524 30434524 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006585.2 -1 validated p.G379 0.997 600 0.2% 348 26.7% 274 79.9% - - - HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like CCT8 10694 genome.wustl.edu 37 21 30434529 30434529 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006585.2 -1 validated p.R378* 1.000 585 0% 347 21.6% 296 1.3% - - - HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like CCT8 10694 genome.wustl.edu 37 21 30439315 30439315 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000431234 -1 known p.T145I 1.000 320 0% 283 22.3% 100 2% - - - HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like GRIK1 2897 genome.wustl.edu 37 21 30934171 30934171 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000830.3 -1 reviewed e15-1 1.000 277 0% 227 18.5% 0 - - - - - GRIK1 2897 genome.wustl.edu 37 21 31015181 31015181 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000830.3 -1 reviewed p.R355C 1.000 118 0% 49 18.4% 0 - possibly_damaging(0.777) deleterious(0.05) deleterious(0.635) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I GRIK1 2897 genome.wustl.edu 37 21 31045394 31045394 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000830.3 -1 reviewed p.A212V 1.000 412 0% 136 19.1% 0 - possibly_damaging(0.573) tolerated(0.25) neutral(0.234) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I KRTAP24-1 643803 genome.wustl.edu 37 21 31654613 31654613 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001085455.1 -1 validated p.Y213C 0.001 265 0% 89 27% 0 - possibly_damaging(0.797) - - NULL KRTAP27-1 643812 genome.wustl.edu 37 21 31709555 31709555 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077711.1 -1 provisional p.K144N 0.156 225 0% 58 25.9% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_PMG KRTAP13-3 337960 genome.wustl.edu 37 21 31797913 31797913 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181622.1 -1 provisional p.S106 0.000 171 0% 134 24.6% 0 - - - - HMMPfam_PMG KRTAP13-3 337960 genome.wustl.edu 37 21 31798089 31798089 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181622.1 -1 provisional p.L48M 0.660 231 0% 191 23.6% 0 - probably_damaging(0.98) deleterious(0.02) deleterious(0.807) HMMPfam_PMG KRTAP15-1 254950 genome.wustl.edu 37 21 31812777 31812777 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181623.1 +1 provisional p.G44 0.117 186 0% 145 10.3% 0 - - - - HMMPfam_PMG TIAM1 7074 genome.wustl.edu 37 21 32575329 32575329 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003253.2 -1 validated e9-1 1.000 481 0% 218 17.4% 0 - - - - - SOD1 6647 genome.wustl.edu 37 21 33039662 33039662 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000454.4 +1 reviewed p.H111N 0.033 598 0% 541 22.9% 912 40.4% benign(0) tolerated(0.89) - HMMPfam_Sod_Cu,superfamily_CuZn superoxide dismutase-like HUNK 30811 genome.wustl.edu 37 21 33371167 33371167 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014586.1 +1 validated p.S605 0.000 95 0% 37 21.6% 1 0% - - - NULL URB1 9875 genome.wustl.edu 37 21 33689122 33689122 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014825.2 -1 validated p.A2097T 0.001 60 0% 38 15.8% 15 6.6% possibly_damaging(0.941) deleterious(0.03) deleterious(0.751) NULL URB1 9875 genome.wustl.edu 37 21 33733325 33733325 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014825.2 -1 validated p.L583F 1.000 96 0% 51 15.7% 3 0% probably_damaging(1) tolerated(0.1) deleterious(0.786) NULL TCP10L 140290 genome.wustl.edu 37 21 33956542 33956542 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144659.5 -1 validated p.G25R 0.006 50 0% 58 12.1% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL SYNJ1 8867 genome.wustl.edu 37 21 34029123 34029123 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003895.3 -1 validated p.G890D 1.000 413 0% 364 12.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_DNase I-like,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD IL10RB 3588 genome.wustl.edu 37 21 34652118 34652118 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000628.3 +1 reviewed p.F131L 0.902 649 0% 309 21.7% 43 30.2% probably_damaging(0.999) tolerated(0.34) deleterious(0.513) HMMSmart_FN3,superfamily_FN_III-like IFNAR1 3454 genome.wustl.edu 37 21 34725978 34725978 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000629.2 +1 reviewed p.I443M 0.000 641 0% 302 24.2% 46 47.8% possibly_damaging(0.631) deleterious(0.04) deleterious(0.570) NULL GART 2618 genome.wustl.edu 37 21 34889690 34889690 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000819.4 -1 reviewed p.P643H 0.989 288 0% 131 19.8% 63 44.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like GART 2618 genome.wustl.edu 37 21 34897223 34897223 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000819.4 -1 reviewed p.G384D 1.000 275 0% 87 23% 46 30.4% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_Rudiment single hybrid motif,HMMPfam_GARS_C GART 2618 genome.wustl.edu 37 21 34903096 34903096 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000819.4 -1 reviewed p.G231E 0.998 101 0% 92 18.5% 25 40% probably_damaging(0.977) deleterious(0) deleterious(0.863) HMMPfam_GARS_A,superfamily_Glutathione synthetase ATP-binding domain-like SON 6651 genome.wustl.edu 37 21 34926207 34926207 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138927.1 +1 reviewed p.P1557H 0.056 247 0% 339 19.5% 18 61.1% benign(0.013) deleterious(0) neutral(0.445) NULL SON 6651 genome.wustl.edu 37 21 34948855 34948855 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000436227 +1 known p.L1446P 1.000 187 0% 117 20.5% 100 37% - - - superfamily_dsRNA-binding domain-like ITSN1 6453 genome.wustl.edu 37 21 35144424 35144424 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003024.2 +1 reviewed p.R368* 0.940 285 0% 128 18.8% 8 0% - - - NULL ITSN1 6453 genome.wustl.edu 37 21 35229123 35229123 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003024.2 +1 reviewed p.E1249K 1.000 279 0.7% 180 22.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) ITSN1 6453 genome.wustl.edu 37 21 35237482 35237482 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000381284 +1 known p.R42W 0.003 57 0% 72 26.4% 0 - - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) KCNE2 9992 genome.wustl.edu 37 21 35742813 35742813 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172201.1 +1 reviewed p.E12D 1.000 222 0% 202 21.3% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL RCAN1 1827 genome.wustl.edu 37 21 35890440 35890440 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004414.5 -1 reviewed p.P234H 1.000 262 0.4% 194 21.6% 15 40% possibly_damaging(0.845) deleterious(0) deleterious(0.768) HMMPfam_Calcipressin CLIC6 54102 genome.wustl.edu 37 21 36081050 36081050 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053277.1 +1 reviewed p.V555M 0.582 162 0% 118 16.9% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) superfamily_Glutathione S-transferase (GST) C-terminal domain RUNX1 861 genome.wustl.edu 37 21 36164827 36164827 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001754.4 -1 reviewed p.P350S 1.000 37 0% 31 29% 11 27.2% benign(0.008) deleterious(0.01) neutral(0.406) NULL DOPEY2 9980 genome.wustl.edu 37 21 37661071 37661071 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005128.2 +1 validated p.Q2105H 0.993 252 0% 225 24% 44 52.2% probably_damaging(0.968) tolerated(0.2) neutral(0.459) NULL DOPEY2 9980 genome.wustl.edu 37 21 37665757 37665757 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005128.2 +1 validated p.A2262D 0.000 227 0% 278 20.1% 57 36.8% benign(0.133) deleterious(0.02) neutral(0.394) NULL MORC3 23515 genome.wustl.edu 37 21 37706016 37706016 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015358.2 +1 reviewed p.D38N 1.000 371 0% 333 23.7% 2 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_HATPase_c,superfamily_ATP_bd_ATPase TTC3 7267 genome.wustl.edu 37 21 38460138 38460138 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001894.1 +1 validated p.V50 0.000 426 0% 304 20.7% 2 0% - - - NULL TTC3 7267 genome.wustl.edu 37 21 38507760 38507760 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001894.1 +1 validated p.S508 0.990 140 0.7% 45 17.8% 8 37.5% - - - superfamily_Spectrin,superfamily_SSF48452 DSCR3 10311 genome.wustl.edu 37 21 38599999 38599999 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000309117 -1 known p.R256M 1.000 107 0% 129 21.7% 35 48.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Vps26 DYRK1A 1859 genome.wustl.edu 37 21 38865350 38865350 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001396.3 +1 reviewed p.R328Q 1.000 327 0% 147 25.2% 10 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ETS2 2114 genome.wustl.edu 37 21 40188989 40188989 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005239.4 +1 validated p.P188H 0.980 279 0% 233 17.6% 39 25.6% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL FLJ45139 400867 genome.wustl.edu 37 21 40250468 40250468 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_078571.1 -1 model NULL 0.000 145 0% 90 20% 0 - - - - - BRWD1 54014 genome.wustl.edu 37 21 40641839 40641839 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018963.3 -1 reviewed p.H506Y 1.000 513 0% 226 24.8% 0 - benign(0.214) tolerated(0.13) neutral(0.274) HMMSmart_SM00320,superfamily_WD40 repeat-like DSCAM 1826 genome.wustl.edu 37 21 41505934 41505934 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001389.3 -1 validated p.L1137M 1.000 206 0% 144 17.4% 0 - probably_damaging(0.976) tolerated(0.21) neutral(0.462) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MX2 4600 genome.wustl.edu 37 21 42762527 42762527 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002463.1 +1 reviewed p.Q256 1.000 296 0% 147 23.1% 10 20% - - - HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540 MX2 4600 genome.wustl.edu 37 21 42762576 42762576 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002463.1 +1 reviewed p.T273A 1.000 239 0% 109 11.9% 11 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540 MX1 4599 genome.wustl.edu 37 21 42821072 42821072 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144925.1 +1 reviewed p.I428L 0.000 89 0% 81 22.2% 89 59.5% benign(0.003) tolerated(0.3) neutral(0.029) HMMPfam_Dynamin_M TMPRSS2 7113 genome.wustl.edu 37 21 42852418 42852418 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005656.3 -1 reviewed p.R186M 0.153 66 0% 63 15.9% 1 0% possibly_damaging(0.91) deleterious(0.04) deleterious(0.712) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like TMPRSS2 7113 genome.wustl.edu 37 21 42861469 42861469 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005656.3 -1 reviewed p.G97E 0.005 139 0% 88 15.9% 0 - possibly_damaging(0.939) deleterious(0.02) deleterious(0.768) NULL RIPK4 54101 genome.wustl.edu 37 21 43171375 43171375 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020639.2 -1 reviewed p.G169R 1.000 207 0% 207 14.5% 25 16% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_Kinase_like,HMMPfam_Pkinase PRDM15 63977 genome.wustl.edu 37 21 43236075 43236075 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022115.3 -1 validated p.C1159Y 1.000 55 0% 51 31.4% 3 66.6% probably_damaging(0.976) tolerated(1) neutral(0.418) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PRDM15 63977 genome.wustl.edu 37 21 43291638 43291638 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022115.3 -1 validated p.S169I 0.002 128 0% 145 18.6% 0 - unknown(0) - - NULL C2CD2 25966 genome.wustl.edu 37 21 43319187 43319187 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000449165 -1 known p.A101T 0.962 36 0% 40 25% 4 25% - - - NULL ZNF295 49854 genome.wustl.edu 37 21 43411651 43411651 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098402.1 -1 validated p.E852K 1.000 98 0% 77 23.4% 2 50% possibly_damaging(0.824) tolerated(0.07) deleterious(0.631) NULL ZNF295 49854 genome.wustl.edu 37 21 43411831 43411831 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098402.1 -1 validated p.R792W 1.000 114 0% 72 20.8% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF295 49854 genome.wustl.edu 37 21 43412904 43412904 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098402.1 -1 validated p.S434I 1.000 216 0% 106 23.6% 3 33.3% benign(0.126) deleterious(0.01) neutral(0.416) NULL ZNF295 49854 genome.wustl.edu 37 21 43413338 43413338 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098402.1 -1 validated p.P289 0.662 233 0% 114 32.5% 2 100% - - - NULL UMODL1 89766 genome.wustl.edu 37 21 43547183 43547183 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173568.3 +1 validated p.G1249R 0.942 201 0% 146 16.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Zona_pellucida,HMMSmart_SM00241 ABCG1 9619 genome.wustl.edu 37 21 43714663 43714663 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000489035 +1 known p.R303C 0.984 143 0% 163 22.1% 76 36.8% - - - HMMPfam_ABC2_membrane TMPRSS3 64699 genome.wustl.edu 37 21 43804079 43804079 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024022.2 -1 reviewed p.A206S 0.996 218 0% 152 13.2% 121 0% benign(0.039) tolerated(0.55) neutral(0.009) superfamily_Trypsin-like serine proteases,superfamily_SRCR-like UBASH3A 53347 genome.wustl.edu 37 21 43838560 43838560 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018961.2 +1 validated p.T296 0.992 91 0% 52 25% 16 0% - - - HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain SLC37A1 54020 genome.wustl.edu 37 21 43955601 43955601 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018964.3 +1 reviewed p.Q97H 1.000 318 0% 290 24.8% 14 42.8% benign(0.023) tolerated(0.07) neutral(0.320) HMMPfam_MFS_1,superfamily_MFS general substrate transporter SLC37A1 54020 genome.wustl.edu 37 21 43982209 43982209 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018964.3 +1 reviewed p.C335R 1.000 751 0% 671 13% 18 33.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_MFS_1,superfamily_MFS general substrate transporter SLC37A1 54020 genome.wustl.edu 37 21 43988497 43988497 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018964.3 +1 reviewed p.A458T 0.961 258 0% 248 30.2% 24 12.5% benign(0.004) tolerated(0.11) neutral(0.272) HMMPfam_MFS_1,superfamily_MFS general substrate transporter WDR4 10785 genome.wustl.edu 37 21 44275801 44275801 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018669.4 -1 reviewed p.Q239H 0.000 16 0% 25 48% 30 60% benign(0.261) tolerated(0.22) neutral(0.069) superfamily_WD40 repeat-like NDUFV3 4731 genome.wustl.edu 37 21 44323764 44323764 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021075.3 +1 reviewed p.P214 0.000 75 0% 83 25.3% 26 53.8% - - - NULL CBS 875 genome.wustl.edu 37 21 44482448 44482448 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000071.2 -1 reviewed p.L338M 1.000 43 0% 71 21.1% 244 47.1% possibly_damaging(0.58) deleterious(0.02) deleterious(0.582) HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS 875 genome.wustl.edu 37 21 44485544 44485544 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000071.2 -1 reviewed p.A207T 1.000 64 0% 62 29% 202 48.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes CRYAA 1409 genome.wustl.edu 37 21 44592349 44592349 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000394.2 +1 reviewed p.V161M 1.000 31 0% 33 39.4% 0 - probably_damaging(0.967) deleterious(0) deleterious(0.853) HMMPfam_HSP20,superfamily_HSP20-like chaperones HSF2BP 11077 genome.wustl.edu 37 21 44949829 44949829 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007031.1 -1 reviewed p.E270D 0.937 109 0% 72 23.6% 3 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_ARM repeat RRP1B 23076 genome.wustl.edu 37 21 45094931 45094931 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015056.2 +1 validated p.L146V 0.028 319 0% 254 16.5% 10 10% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) HMMPfam_Nop52 PDXK 8566 genome.wustl.edu 37 21 45153948 45153948 + Splice_Site SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003681.4 +1 reviewed e2-2 1.000 495 0.2% 644 20.8% 2 100% - - - - PDXK 8566 genome.wustl.edu 37 21 45173526 45173526 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003681.4 +1 reviewed p.V229I 1.000 182 0% 196 14.8% 475 34.5% benign(0.125) tolerated(0.31) neutral(0.037) HMMPfam_PfkB,superfamily_Ribokinase-like TRAPPC10 7109 genome.wustl.edu 37 21 45503039 45503039 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003274.4 +1 reviewed p.N698 0.391 113 0% 81 24.7% 7 14.2% - - - NULL TRAPPC10 7109 genome.wustl.edu 37 21 45507665 45507665 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003274.4 +1 reviewed p.V875 0.992 151 0% 133 19.5% 8 37.5% - - - NULL PWP2 5822 genome.wustl.edu 37 21 45548014 45548014 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005049.2 +1 validated p.A781V 0.149 83 0% 85 25.9% 70 44.2% possibly_damaging(0.46) deleterious(0.02) deleterious(0.534) HMMPfam_PWP2 AIRE 326 genome.wustl.edu 37 21 45706514 45706514 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000383.2 +1 reviewed p.Q69H 0.995 48 0% 52 23.1% 0 - probably_damaging(0.972) deleterious(0.03) deleterious(0.778) HMMPfam_Sp100 PFKL 5211 genome.wustl.edu 37 21 45741738 45741738 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002626.4 +1 reviewed p.E440K 1.000 85 0% 88 19.3% 167 39.5% possibly_damaging(0.929) tolerated(0.08) deleterious(0.676) HMMPfam_PFK,superfamily_Phosphofructokinase TRPM2 7226 genome.wustl.edu 37 21 45810801 45810801 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003307.3 +1 reviewed p.D445N 0.999 189 0% 187 19.8% 2 0% benign(0.176) tolerated(0.12) neutral(0.277) NULL TRPM2 7226 genome.wustl.edu 37 21 45817704 45817704 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003307.3 +1 reviewed p.T669 0.837 95 0% 67 22.4% 4 0% - - - NULL TRPM2 7226 genome.wustl.edu 37 21 45820226 45820226 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003307.3 +1 reviewed p.L765 0.972 95 0% 89 18% 7 14.2% - - - NULL TRPM2 7226 genome.wustl.edu 37 21 45825804 45825804 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003307.3 +1 reviewed p.L892 0.722 80 0% 50 24% 7 0% - - - HMMPfam_Ion_trans LRRC3 81543 genome.wustl.edu 37 21 45877191 45877191 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030891.3 +1 validated p.V222I 0.016 45 0% 73 21.9% 2 0% benign(0.073) deleterious(0.01) neutral(0.411) NULL KRTAP10-8 386681 genome.wustl.edu 37 21 46032530 46032530 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198695.2 +1 validated p.C171 0.118 416 0% 406 20% 0 - - - - NULL KRTAP10-11 386678 genome.wustl.edu 37 21 46067045 46067045 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198692.2 +1 validated p.A224T 0.000 371 0% 291 24.4% 0 - possibly_damaging(0.515) tolerated(1) neutral(0.173) NULL KRTAP10-12 386685 genome.wustl.edu 37 21 46117177 46117177 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198699.1 +1 provisional p.D21N 0.012 160 0% 145 20.7% 0 - probably_damaging(0.995) tolerated(0.19) deleterious(0.507) NULL KRTAP10-12 386685 genome.wustl.edu 37 21 46117416 46117416 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198699.1 +1 provisional p.C100 0.999 156 0% 166 18.7% 0 - - - - HMMPfam_Keratin_B2 PTTG1IP 754 genome.wustl.edu 37 21 46271410 46271410 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000445724 -1 known p.G101S 0.000 163 0% 141 11.3% 116 11.2% possibly_damaging(0.948) deleterious(0) deleterious(0.836) NULL ITGB2 3689 genome.wustl.edu 37 21 46306769 46306769 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000211.3 -1 reviewed p.A710V 0.127 30 0% 33 27.3% 220 0.9% benign(0.008) deleterious(0.04) neutral(0.349) NULL ITGB2 3689 genome.wustl.edu 37 21 46309923 46309923 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000211.3 -1 reviewed p.R543C 1.000 51 0% 46 17.4% 128 0.7% probably_damaging(0.988) deleterious(0) deleterious(0.882) superfamily_SSF57196 ITGB2 3689 genome.wustl.edu 37 21 46310004 46310004 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000211.3 -1 reviewed p.Q516* 1.000 57 0% 65 21.5% 172 0% - - - PatternScan_INTEGRIN_BETA SLC19A1 6573 genome.wustl.edu 37 21 46935724 46935724 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194255.1 -1 validated p.T542A 0.000 76 0% 90 13.3% 22 22.7% benign(0.01) deleterious(0) neutral(0.445) NULL SLC19A1 6573 genome.wustl.edu 37 21 46951668 46951668 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194255.1 -1 validated p.F195S 1.000 43 0% 46 15.2% 21 38% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter COL6A1 1291 genome.wustl.edu 37 21 47402565 47402565 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001848.2 +1 reviewed p.F39V 1.000 93 0% 127 28.3% 57 22.8% probably_damaging(0.994) tolerated(0.21) deleterious(0.496) HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 COL6A2 1292 genome.wustl.edu 37 21 47545214 47545214 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001849.3 +1 reviewed p.C602Y 1.000 29 0% 47 31.9% 159 2.5% possibly_damaging(0.922) deleterious(0) deleterious(0.816) NULL COL6A2 1292 genome.wustl.edu 37 21 47546420 47546420 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001849.3 +1 reviewed p.P809H 1.000 77 0% 75 21.3% 313 1.2% probably_damaging(1) - - superfamily_vWA-like FTCD 10841 genome.wustl.edu 37 21 47570400 47570400 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006657.2 -1 reviewed p.L226 1.000 136 0% 110 23.6% 0 - - - - superfamily_Formiminotransferase domain of formiminotransferase-cyclodeaminase.,HMMPfam_FTCD LSS 4047 genome.wustl.edu 37 21 47616169 47616169 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001438.2 -1 reviewed p.T561 0.124 134 0% 100 22% 9 44.4% - - - HMMPfam_Prenyltrans,superfamily_Terp_cyc_toroid LSS 4047 genome.wustl.edu 37 21 47641853 47641853 + Silent SNP C C T rs182615882 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001438.2 -1 reviewed p.A155 0.019 230 0% 276 19.6% 10 40% - - - HMMPfam_Prenyltrans,superfamily_Terp_cyc_toroid MCM3AP 8888 genome.wustl.edu 37 21 47697611 47697611 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003906.3 -1 reviewed p.S563N 0.000 179 0% 141 12.1% 12 8.3% benign(0.141) deleterious(0.02) neutral(0.395) NULL PCNT 5116 genome.wustl.edu 37 21 47808754 47808754 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006031.5 +1 reviewed p.G1188R 0.999 40 0% 29 31% 4 50% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL PCNT 5116 genome.wustl.edu 37 21 47811279 47811279 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006031.5 +1 reviewed p.A1402S 0.023 12 0% 12 41.7% 1 100% benign(0.138) tolerated(0.61) neutral(0.015) NULL PCNT 5116 genome.wustl.edu 37 21 47850052 47850052 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006031.5 +1 reviewed p.R2607* 0.001 212 0% 186 30.6% 7 0% - - - NULL PCNT 5116 genome.wustl.edu 37 21 47863790 47863790 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006031.5 +1 reviewed p.P3256 0.000 35 0% 45 31.1% 22 36.3% - - - NULL PCNT 5116 genome.wustl.edu 37 21 47863852 47863852 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006031.5 +1 reviewed p.S3277I 0.000 39 0% 35 31.4% 19 31.5% possibly_damaging(0.936) deleterious(0.03) deleterious(0.746) NULL DIP2A 23181 genome.wustl.edu 37 21 47916979 47916979 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015151.3 +1 reviewed p.S121F 1.000 504 0% 341 19.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DMAP_binding DIP2A 23181 genome.wustl.edu 37 21 47970482 47970482 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015151.3 +1 reviewed p.G888 0.894 114 0% 137 21.9% 4 25% - - - superfamily_Acetyl-CoA synthetase-like PRMT2 3275 genome.wustl.edu 37 21 48068477 48068477 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379844 +1 known p.A30D 1.000 294 0% 318 21.7% 83 30.1% benign(0.005) tolerated(1) - NULL ENSG00000215575 0 genome.wustl.edu 37 22 17063544 17063544 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000400600 -1 known p.D2 0.951 107 0% 93 22.6% 0 - - - - HMMPfam_CaKB GAB4 128954 genome.wustl.edu 37 22 17443698 17443698 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037814.1 -1 provisional p.Q550 1.000 141 0% 133 11.3% 0 - - - - NULL CECR2 27443 genome.wustl.edu 37 22 18020332 18020332 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000400573 +1 known p.S554L 0.421 67 0% 55 23.6% 1 0% benign(0) deleterious(0.01) neutral(0.406) NULL LOC100288065 100288065 genome.wustl.edu 37 22 18063934 18063934 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344192.1 -1 model p.Q287R 0.000 108 0% 100 26% 0 - - - - NULL SLC25A18 83733 genome.wustl.edu 37 22 18070790 18070790 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031481.1 +1 provisional p.F225 0.010 490 0.2% 287 18.1% 1 0% - - - superfamily_Mitoch_carrier,HMMPfam_Mito_carr BID 637 genome.wustl.edu 37 22 18232941 18232941 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_197966.1 -1 reviewed e2-1 0.228 14 0% 17 29.4% 0 - - - - - MICAL3 57553 genome.wustl.edu 37 22 18300668 18300668 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015241.2 -1 provisional p.A1587T 0.059 23 4.3% 24 20.8% 8 37.5% benign(0.005) deleterious(0.01) neutral(0.406) NULL MICAL3 57553 genome.wustl.edu 37 22 18379530 18379530 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015241.2 -1 provisional p.H389P 1.000 108 0.9% 35 17.1% 3 66.6% probably_damaging(0.971) tolerated(0.14) deleterious(0.662) superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain PRODH 5625 genome.wustl.edu 37 22 18904488 18904488 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016335.3 -1 reviewed p.V481M 0.997 122 0% 128 20.3% 20 0% benign(0.001) tolerated(0.26) neutral(0.034) HMMPfam_Pro_dh,superfamily_FAD-linked oxidoreductase DGCR14 8220 genome.wustl.edu 37 22 19127526 19127526 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022719.2 -1 reviewed p.E138* 0.986 57 0% 63 17.5% 17 5.8% - - - HMMPfam_Es2 LOC100288309 100288309 genome.wustl.edu 37 22 19163745 19163745 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002344193.1 +1 model p.A106T 0.785 78 0% 135 25.2% 253 34.3% - - - NULL CLTCL1 8218 genome.wustl.edu 37 22 19175547 19175547 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007098.3 -1 reviewed p.N1460 1.000 258 0% 271 21.4% 9 77.7% - - - HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat CLTCL1 8218 genome.wustl.edu 37 22 19184098 19184098 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007098.3 -1 reviewed p.G1315S 1.000 76 0% 75 17.3% 17 41.1% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat CDC45 8318 genome.wustl.edu 37 22 19470333 19470333 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003504.3 +1 reviewed p.V109I 1.000 403 0% 369 19.8% 17 5.8% benign(0.099) tolerated(1) neutral(0.007) HMMPfam_CDC45 CDC45 8318 genome.wustl.edu 37 22 19502480 19502480 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000444382 +1 known p.L471I 0.000 168 0% 160 25% 0 - - - - HMMPfam_CDC45 SEPT5 5413 genome.wustl.edu 37 22 19709395 19709395 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002688.4 +1 reviewed p.R289C 1.000 60 0% 58 19% 9 11.1% benign(0.006) deleterious(0.03) neutral(0.364) HMMPfam_Septin TBX1 6899 genome.wustl.edu 37 22 19750825 19750825 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080647.1 +1 reviewed p.L158M 1.000 195 0% 235 25.5% 0 - possibly_damaging(0.555) tolerated(0.09) deleterious(0.486) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd C22orf29 79680 genome.wustl.edu 37 22 19838830 19838830 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024627.5 -1 validated p.P319T 0.000 138 0% 280 23.6% 10 40% benign(0.004) deleterious(0) neutral(0.445) NULL C22orf29 79680 genome.wustl.edu 37 22 19839605 19839605 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024627.5 -1 validated p.T60 0.000 65 0% 66 22.7% 3 66.6% - - - NULL COMT 1312 genome.wustl.edu 37 22 19956170 19956170 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000754.3 +1 reviewed p.H243Y 0.173 108 0% 86 18.6% 199 30.6% benign(0) tolerated(1) - superfamily_S-adenosyl-L-methionine-dependent methyltransferases ARVCF 421 genome.wustl.edu 37 22 19967492 19967492 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001670.1 -1 reviewed p.E390 0.999 17 0.000 9 0.444 0 - - - - HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat ARVCF 421 genome.wustl.edu 37 22 19978222 19978222 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001670.1 -1 reviewed p.Q32H 0.998 32 0% 35 20% 0 - possibly_damaging(0.852) deleterious(0) deleterious(0.772) NULL C22orf25 128989 genome.wustl.edu 37 22 20049205 20049205 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000485715 +1 known NULL 1.000 53 0% 48 20.8% 18 22.2% - - - - TRMT2A 27037 genome.wustl.edu 37 22 20101085 20101085 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439169 -1 known e9-1 0.000 24 0% 61 32.8% 1 100% - - - - TRMT2A 27037 genome.wustl.edu 37 22 20103287 20103287 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022727.4 -1 validated p.N206D 1.000 31 0% 41 29.3% 33 36.3% benign(0.104) tolerated(0.1) neutral(0.294) superfamily_S-adenosyl-L-methionine-dependent methyltransferases ZDHHC8 29801 genome.wustl.edu 37 22 20131150 20131150 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013373.3 +1 reviewed p.R666M 0.985 10 0.000 5 0.800 13 53.8% possibly_damaging(0.92) deleterious(0) deleterious(0.816) NULL DGCR6L 85359 genome.wustl.edu 37 22 20302896 20302896 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033257.2 -1 reviewed p.A159V 1.000 91 0% 128 18.8% 117 35.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DGCR6 RIMBP3 85376 genome.wustl.edu 37 22 20457006 20457006 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015672.1 -1 validated p.S1432 0.000 197 0% 230 13.5% 1 0% - - - NULL KLHL22 84861 genome.wustl.edu 37 22 20812148 20812148 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032775.2 -1 validated p.R418S 1.000 74 0% 60 16.7% 33 9% probably_damaging(0.992) tolerated(0.16) deleterious(0.507) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain KLHL22 84861 genome.wustl.edu 37 22 20843381 20843381 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032775.2 -1 validated p.L40M 1.000 117 0% 140 24.3% 9 33.3% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) superfamily_POZ domain,HMMPfam_BTB FAM108A5P 729495 genome.wustl.edu 37 22 21022397 21022397 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343784.1 -1 model p.P307 0.997 50 0% 39 28.2% 44 0% - - - superfamily_alpha/beta-Hydrolases PI4KA 5297 genome.wustl.edu 37 22 21083604 21083604 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_058004.2 -1 reviewed p.A1502V 1.000 172 0% 98 29.6% 32 21.8% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat SERPIND1 3053 genome.wustl.edu 37 22 21141224 21141224 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000185.3 +1 reviewed p.T457M 0.821 171 0% 73 21.9% 0 - possibly_damaging(0.642) tolerated(0.13) deleterious(0.478) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins SNAP29 9342 genome.wustl.edu 37 22 21237844 21237844 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004782.3 +1 reviewed p.I202 0.694 266 0% 159 23.3% 82 47.5% - - - HMMPfam_SNARE,HMMSmart_t_SNARE CRKL 1399 genome.wustl.edu 37 22 21288128 21288128 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005207.3 +1 reviewed p.L125M 1.000 342 0% 133 23.3% 10 80% benign(0.049) tolerated(0.14) neutral(0.253) superfamily_SH3-domain,superfamily_SH2 domain LZTR1 8216 genome.wustl.edu 37 22 21341853 21341853 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006767.3 +1 reviewed p.G127 0.995 77 0% 105 23.8% 7 57.1% - - - HMMSmart_SM00612,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2 P2RX6 9127 genome.wustl.edu 37 22 21377819 21377819 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005446.3 +1 reviewed p.V268I 0.000 170 0% 180 27.2% 0 - benign(0.002) tolerated(1) - HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR HIC2 23119 genome.wustl.edu 37 22 21800178 21800178 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015094.2 +1 validated p.H332Y 1.000 9 0.000 9 0.444 1 0% possibly_damaging(0.891) tolerated(0.1) deleterious(0.637) NULL PPIL2 23759 genome.wustl.edu 37 22 22036729 22036729 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148176.2 +1 reviewed p.V131L 1.000 130 0% 117 21.4% 28 46.4% probably_damaging(0.99) tolerated(0.07) deleterious(0.760) NULL TOP3B 8940 genome.wustl.edu 37 22 22318370 22318370 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003935.3 -1 reviewed p.R377C 1.000 158 0% 148 22.3% 11 36.3% probably_damaging(0.997) deleterious(0.02) deleterious(0.849) superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac TOP3B 8940 genome.wustl.edu 37 22 22328814 22328814 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003935.3 -1 reviewed p.H39 0.331 104 0% 98 18.4% 4 25% - - - superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00493,HMMPfam_Toprim ZNF280A 129025 genome.wustl.edu 37 22 22868685 22868685 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080740.3 -1 reviewed p.L424F 1.000 288 0.3% 252 25.4% 1 100% benign(0.418) deleterious(0.02) deleterious(0.518) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PRAME 23532 genome.wustl.edu 37 22 22890622 22890622 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006115.3 -1 reviewed p.R466M 0.001 148 0% 88 15.9% 237 32% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL IGLV2-33 28811 genome.wustl.edu 37 22 22930946 22930946 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390302 +1 known p.D47 0.180 256 0% 124 11.3% 0 - - - - HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin GGTLC2 91227 genome.wustl.edu 37 22 22989573 22989573 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000215938 +1 known p.V142A 0.981 194 0% 141 27.7% 0 - - - - NULL IGLV2-23 28813 genome.wustl.edu 37 22 23040852 23040852 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390306 +1 known p.Q100H 0.950 221 0% 130 23.1% 2527 0% benign(0.042) deleterious(0) neutral(0.447) HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin IGLV2-11 28816 genome.wustl.edu 37 22 23135373 23135373 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390314 +1 known p.V79I 0.184 335 0% 247 11.3% 355 0% benign(0.005) tolerated(1) - HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin IGLV3-1 28809 genome.wustl.edu 37 22 23223413 23223413 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000390319 +1 known p.S61 1.000 183 0% 101 29.7% 706 0% - - - HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin RTDR1 27156 genome.wustl.edu 37 22 23401708 23401708 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014433.2 -1 reviewed p.P327S 0.026 145 0% 109 21.1% 14 14.2% possibly_damaging(0.771) tolerated(0.7) neutral(0.288) NULL BCR 613 genome.wustl.edu 37 22 23603586 23603586 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004327.3 +1 reviewed p.V537 1.000 152 0% 166 25.9% 56 62.5% - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) LOC649264 649264 genome.wustl.edu 37 22 23715872 23715872 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_001131286.2 -1 model p.W79C 1.000 73 0% 42 33.3% 0 - - - - HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases ZNF70 7621 genome.wustl.edu 37 22 24086615 24086615 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021916.2 -1 provisional p.S238I 0.131 131 0% 130 13.1% 1 0% probably_damaging(0.981) tolerated(0.5) neutral(0.435) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MMP11 4320 genome.wustl.edu 37 22 24124566 24124566 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005940.3 +1 reviewed p.R410H 1.000 34 0% 67 19.4% 538 0.7% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120 SMARCB1 6598 genome.wustl.edu 37 22 24135750 24135750 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003073.3 +1 reviewed p.H79 0.746 134 1.5% 107 22.4% 145 33.7% - - - NULL SMARCB1 6598 genome.wustl.edu 37 22 24159083 24159083 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003073.3 +1 reviewed p.S252I 1.000 194 0% 110 20.9% 161 37.8% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_SNF5 SLC2A11 66035 genome.wustl.edu 37 22 24226001 24226001 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030807.3 +1 validated p.G350S 0.988 497 0.4% 384 21.1% 4 25% possibly_damaging(0.932) tolerated(0.44) neutral(0.391) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter SLC2A11 66035 genome.wustl.edu 37 22 24226219 24226219 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000407566 +1 known p.W132* 0.393 84 0% 60 23.3% 0 - - - - NULL CABIN1 23523 genome.wustl.edu 37 22 24452798 24452798 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012295.2 +1 reviewed p.L413I 1.000 159 0% 98 23.5% 4 50% probably_damaging(1) tolerated(0.26) deleterious(0.534) NULL CABIN1 23523 genome.wustl.edu 37 22 24455824 24455824 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012295.2 +1 reviewed p.S466Y 1.000 196 0% 140 25.7% 16 50% possibly_damaging(0.951) deleterious(0.04) deleterious(0.743) NULL CABIN1 23523 genome.wustl.edu 37 22 24458436 24458436 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012295.2 +1 reviewed p.C548 1.000 195 0% 180 23.9% 13 69.2% - - - NULL CABIN1 23523 genome.wustl.edu 37 22 24487598 24487598 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012295.2 +1 reviewed p.R1196H 0.987 61 0% 33 12.1% 27 44.4% benign(0.161) tolerated(0.09) neutral(0.311) superfamily_SSF48452 SUSD2 56241 genome.wustl.edu 37 22 24579113 24579113 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019601.3 +1 validated p.C55* 0.192 212 0% 202 14.9% 3 0% - - - HMMPfam_Somatomedin_B,HMMSmart_SO,PatternScan_SMB_1,superfamily_SSF90188 SUSD2 56241 genome.wustl.edu 37 22 24579517 24579517 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019601.3 +1 validated p.H114 1.000 70 0% 117 20.5% 3 0% - - - NULL SUSD2 56241 genome.wustl.edu 37 22 24581503 24581503 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019601.3 +1 validated p.P345H 0.996 29 0% 40 17.5% 0 - probably_damaging(1) tolerated(0.21) deleterious(0.544) HMMPfam_AMOP,HMMSmart_AMOP SUSD2 56241 genome.wustl.edu 37 22 24582229 24582229 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019601.3 +1 validated p.T496 0.000 39 0% 46 13% 3 33.3% - - - HMMPfam_VWD,HMMSmart_VWD SUSD2 56241 genome.wustl.edu 37 22 24584205 24584205 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019601.3 +1 validated p.A785V 0.002 74 0% 75 26.7% 1 0% benign(0) tolerated(0.26) neutral(0.034) NULL SPECC1L 23384 genome.wustl.edu 37 22 24717484 24717484 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145468.1 +1 validated p.A179V 1.000 119 0% 154 18.8% 6 66.6% benign(0.002) tolerated(0.18) neutral(0.056) NULL ADORA2A 135 genome.wustl.edu 37 22 24836861 24836861 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000675.4 +1 reviewed p.P215S 0.988 98 0% 68 27.9% 8 0% benign(0) tolerated(0.82) neutral(0.001) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ADORA2A 135 genome.wustl.edu 37 22 24837106 24837106 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000675.4 +1 reviewed p.R296 0.992 64 0% 62 24.2% 16 0% - - - superfamily_Family A G protein-coupled receptor-like UPB1 51733 genome.wustl.edu 37 22 24891463 24891463 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000413389 +1 known p.W20* 1.000 50 0% 78 14.1% 0 - - - - NULL UPB1 51733 genome.wustl.edu 37 22 24896230 24896230 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016327.2 +1 reviewed p.A87V 0.982 137 0% 144 13.2% 0 - possibly_damaging(0.83) deleterious(0.02) deleterious(0.699) HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase SNRPD3 6634 genome.wustl.edu 37 22 24967908 24967908 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004175.3 +1 reviewed p.G115V 1.000 356 0% 209 13.9% 283 26.8% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) superfamily_Sm-like ribonucleoproteins GGT1 2678 genome.wustl.edu 37 22 25023537 25023537 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032364.2 +1 reviewed p.V387I 0.999 115 0% 117 13.7% 2 0% benign(0) tolerated(0.37) neutral(0.019) HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE PIWIL3 440822 genome.wustl.edu 37 22 25131759 25131759 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008496.2 -1 validated p.S517I 0.000 402 0% 209 25.4% 0 - benign(0.072) deleterious(0) neutral(0.450) NULL SGSM1 129049 genome.wustl.edu 37 22 25282587 25282587 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039948.2 +1 validated p.L609 1.000 92 0% 76 15.8% 0 - - - - superfamily_Ypt/Rab-GAP domain of gyp1p LRP5L 91355 genome.wustl.edu 37 22 25755985 25755985 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135772.1 -1 validated p.A25 0.995 175 0% 161 13% 14 35.7% - - - HMMPfam_Ldl_recept_b,superfamily_YWTD domain MYO18B 84700 genome.wustl.edu 37 22 26164494 26164494 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032608.5 +1 reviewed p.A204V 0.009 61 0% 43 18.6% 0 - possibly_damaging(0.888) deleterious(0.01) deleterious(0.753) NULL MYO18B 84700 genome.wustl.edu 37 22 26166100 26166100 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032608.5 +1 reviewed p.E512D 1.000 684 0% 415 20.7% 0 - probably_damaging(0.998) deleterious(0.04) deleterious(0.823) NULL SEZ6L 23544 genome.wustl.edu 37 22 26736442 26736442 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021115.4 +1 validated p.G686S 0.999 167 0% 63 28.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain HPS4 89781 genome.wustl.edu 37 22 26849245 26849245 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022081.4 -1 reviewed p.G694D 0.996 180 0% 144 27.8% 23 21.7% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) NULL HPS4 89781 genome.wustl.edu 37 22 26861484 26861484 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022081.4 -1 reviewed p.P247H 0.998 253 0% 164 12.2% 15 6.6% probably_damaging(0.97) deleterious(0.04) deleterious(0.761) NULL TFIP11 24144 genome.wustl.edu 37 22 26890122 26890122 + Missense_Mutation SNP G G A rs190854539 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008697.1 -1 validated p.A714V 0.999 177 0% 134 27.6% 73 13.6% possibly_damaging(0.943) deleterious(0.01) deleterious(0.793) NULL TFIP11 24144 genome.wustl.edu 37 22 26892761 26892761 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008697.1 -1 validated p.W511R 1.000 251 0% 156 21.8% 24 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TFP11 TFIP11 24144 genome.wustl.edu 37 22 26892856 26892856 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008697.1 -1 validated e8-1 1.000 215 0% 145 20.7% 2 50% - - - - TFIP11 24144 genome.wustl.edu 37 22 26895166 26895166 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008697.1 -1 validated p.Y411 1.000 110 0% 72 15.3% 17 58.8% - - - HMMPfam_TFP11 TPST2 8459 genome.wustl.edu 37 22 26928662 26928662 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008566.1 -1 reviewed p.Q364R 1.000 448 0% 356 17.4% 51 27.4% benign(0.003) deleterious(0.05) neutral(0.345) NULL MN1 4330 genome.wustl.edu 37 22 28147072 28147072 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002430.2 -1 reviewed p.P1265H 0.993 119 0% 66 16.7% 0 - probably_damaging(0.964) deleterious(0.01) deleterious(0.812) NULL TTC28 23331 genome.wustl.edu 37 22 28379665 28379665 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145418.1 -1 validated p.S1997Y 1.000 131 0% 154 22.7% 8 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL TTC28 23331 genome.wustl.edu 37 22 28397408 28397408 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145418.1 -1 validated p.G1451D 1.000 75 0% 92 17.4% 5 60% benign(0.005) tolerated(0.07) neutral(0.319) NULL HSCB 150274 genome.wustl.edu 37 22 29153152 29153152 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172002.3 +1 validated p.L235I 0.783 151 0% 108 25% 23 8.6% benign(0.011) deleterious(0) neutral(0.445) NULL C22orf31 25770 genome.wustl.edu 37 22 29455015 29455015 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015370.1 -1 predicted p.Q196H 0.024 150 0% 135 27.4% 0 - benign(0.156) - - NULL KREMEN1 83999 genome.wustl.edu 37 22 29536317 29536317 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032045.4 +1 reviewed p.A408S 1.000 406 0% 240 27.1% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL EWSR1 2130 genome.wustl.edu 37 22 29669838 29669838 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005243.3 +1 reviewed p.G71* 1.000 299 0% 242 24% 127 1.5% - - - NULL EWSR1 2130 genome.wustl.edu 37 22 29678459 29678459 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005243.3 +1 reviewed p.Y165F 1.000 175 0% 120 23.3% 138 1.4% unknown(0) tolerated(0.07) - NULL AP1B1 162 genome.wustl.edu 37 22 29752486 29752486 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127.3 -1 reviewed p.T215 0.186 163 0% 98 15.3% 40 25% - - - HMMPfam_Adaptin_N,superfamily_ARM repeat THOC5 8563 genome.wustl.edu 37 22 29927952 29927952 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002877.1 -1 validated p.A239T 1.000 165 0% 89 14.6% 29 27.5% possibly_damaging(0.843) deleterious(0.02) deleterious(0.706) HMMPfam_FimP NF2 4771 genome.wustl.edu 37 22 30061014 30061014 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000268.3 +1 reviewed p.V282 0.997 541 0% 325 24.6% 10 70% - - - HMMPfam_FERM_C,superfamily_PH domain-like GATSL3 652968 genome.wustl.edu 37 22 30682296 30682296 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037666.2 -1 validated p.I233 0.976 306 0% 244 22.1% 5 40% - - - NULL GATSL3 652968 genome.wustl.edu 37 22 30683474 30683474 + Missense_Mutation SNP G G A rs189381704 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037666.2 -1 validated p.A87V 0.000 18 0% 35 25.7% 11 45.4% benign(0.017) deleterious(0.02) neutral(0.384) NULL RNF215 200312 genome.wustl.edu 37 22 30776178 30776178 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017981.1 -1 validated p.R294H 0.982 40 0% 44 29.5% 8 12.5% probably_damaging(0.998) tolerated(0.24) deleterious(0.512) NULL SEC14L4 284904 genome.wustl.edu 37 22 30886113 30886113 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174977.3 -1 reviewed p.R401I 0.000 337 0% 165 20.6% 2 50% possibly_damaging(0.928) tolerated(0.24) neutral(0.413) NULL SEC14L4 284904 genome.wustl.edu 37 22 30888467 30888467 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174977.3 -1 reviewed p.L220M 0.999 210 0% 144 22.9% 0 - benign(0.085) tolerated(0.06) neutral(0.329) HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain SEC14L4 284904 genome.wustl.edu 37 22 30890140 30890140 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174977.3 -1 reviewed p.R193* 0.941 352 0% 216 17.1% 1 0% - - - HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain GAL3ST1 9514 genome.wustl.edu 37 22 30951412 30951412 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004861.1 -1 reviewed p.C267Y 1.000 37 0% 32 21.9% 34 52.9% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Gal-3-0_sulfotr DUSP18 150290 genome.wustl.edu 37 22 31059698 31059698 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152511.3 -1 validated p.G98D 1.000 248 0% 152 25.7% 11 27.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II OSBP2 23762 genome.wustl.edu 37 22 31283464 31283464 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030758.3 +1 reviewed p.R387W 0.982 52 0% 53 20.8% 8 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL OSBP2 23762 genome.wustl.edu 37 22 31289487 31289487 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030758.3 +1 reviewed p.H676Q 1.000 72 0% 53 32.1% 10 60% probably_damaging(0.961) deleterious(0.04) deleterious(0.753) HMMPfam_Oxysterol_BP MORC2 22880 genome.wustl.edu 37 22 31334182 31334182 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014941.1 -1 provisional p.E300* 1.000 333 0% 164 10.4% 22 0% - - - NULL SMTN 6525 genome.wustl.edu 37 22 31491378 31491378 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134270.1 +1 reviewed p.G574 0.000 134 0% 143 25.2% 28 3.5% - - - NULL SMTN 6525 genome.wustl.edu 37 22 31493042 31493042 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134270.1 +1 reviewed p.S695 0.960 96 0% 137 23.4% 25 8% - - - NULL SMTN 6525 genome.wustl.edu 37 22 31494748 31494748 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134270.1 +1 reviewed p.A752E 1.000 22 0% 15 26.7% 27 7.4% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL SMTN 6525 genome.wustl.edu 37 22 31495849 31495849 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_134270.1 +1 reviewed p.R857H 1.000 203 0% 249 11.6% 60 8.3% probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain INPP5J 27124 genome.wustl.edu 37 22 31529190 31529190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002837.1 +1 validated p.R399H 1.000 157 0.6% 133 15.8% 9 77.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LIMK2 3985 genome.wustl.edu 37 22 31644600 31644600 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000438187 +1 known p.E18D 1.000 116 0% 61 24.6% 0 - unknown(0) - - NULL LIMK2 3985 genome.wustl.edu 37 22 31658167 31658167 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031801.1 +1 reviewed p.P179H 1.000 242 0% 161 21.7% 17 47% possibly_damaging(0.653) deleterious(0.01) deleterious(0.635) HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ EIF4ENIF1 56478 genome.wustl.edu 37 22 31843546 31843546 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000445424 -1 known p.A41V 1.000 143 0% 58 31% 25 36% - - - NULL EIF4ENIF1 56478 genome.wustl.edu 37 22 31854487 31854487 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019843.3 -1 reviewed p.L313I 1.000 129 0% 64 28.1% 12 33.3% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_EIF4E-T SFI1 9814 genome.wustl.edu 37 22 31953014 31953014 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007467.1 +1 validated p.A211S 0.916 207 0% 47 21.3% 19 31.5% possibly_damaging(0.88) deleterious(0) deleterious(0.788) NULL PRR14L 253143 genome.wustl.edu 37 22 32109646 32109646 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173566.2 -1 validated p.E1393D 0.000 286 0% 147 19.7% 4 25% possibly_damaging(0.93) tolerated(0.28) neutral(0.408) NULL PRR14L 253143 genome.wustl.edu 37 22 32112989 32112989 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173566.2 -1 validated p.P279H 0.997 622 0% 276 22.1% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRR14L 253143 genome.wustl.edu 37 22 32113139 32113139 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173566.2 -1 validated p.G229D 0.000 809 0% 340 20% 3 66.6% benign(0.002) tolerated(0.54) neutral(0.007) NULL DEPDC5 9681 genome.wustl.edu 37 22 32211030 32211030 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014662.2 +1 validated p.V500I 0.999 156 0% 59 22% 5 60% benign(0.06) tolerated(0.39) neutral(0.020) NULL DEPDC5 9681 genome.wustl.edu 37 22 32229913 32229913 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014662.2 +1 validated p.R706M 1.000 485 0% 211 18.5% 2 100% possibly_damaging(0.843) deleterious(0.03) deleterious(0.688) NULL SLC5A4 6527 genome.wustl.edu 37 22 32621755 32621755 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014227.2 -1 validated p.V446F 0.002 301 0.3% 158 14.6% 2 0% benign(0.133) deleterious(0.01) neutral(0.417) HMMPfam_SSF RFPL3-AS1 10737 genome.wustl.edu 37 22 32756051 32756051 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_001450.2 -1 provisional NULL 0.000 39 0% 39 20.5% 0 - - - - - C22orf28 51493 genome.wustl.edu 37 22 32788315 32788315 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014306.4 -1 validated p.R441H 1.000 224 0% 185 25.9% 185 40% benign(0.07) deleterious(0.03) neutral(0.369) HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602 C22orf28 51493 genome.wustl.edu 37 22 32789880 32789880 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014306.4 -1 validated p.A430V 1.000 256 0% 200 21% 173 39.3% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602 C22orf28 51493 genome.wustl.edu 37 22 32802747 32802747 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014306.4 -1 validated p.R81Q 1.000 212 0% 147 18.4% 52 53.8% benign(0.03) tolerated(0.23) neutral(0.043) HMMPfam_UPF0027,PatternScan_UPF0027,superfamily_Hypothetical protein PH1602 SYN3 8224 genome.wustl.edu 37 22 33327439 33327439 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003490.3 -1 reviewed p.A133T 0.945 309 0% 121 22.3% 0 - unknown(0) deleterious(0.01) - HMMPfam_Synapsin,superfamily_PreATP-grasp domain LARGE 9215 genome.wustl.edu 37 22 33700306 33700306 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004737.4 -1 reviewed p.R547C 1.000 106 0% 65 24.6% 15 73.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TOM1 10043 genome.wustl.edu 37 22 35713945 35713945 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135732.1 +1 reviewed p.T43M 1.000 135 0% 79 21.5% 22 31.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS TOM1 10043 genome.wustl.edu 37 22 35743315 35743315 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NR_024194.1 +1 reviewed NULL 0.005 55 0% 57 19.3% 53 30.1% - - - - MCM5 4174 genome.wustl.edu 37 22 35808621 35808621 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006739.3 +1 reviewed p.G346 0.681 35 0% 48 16.7% 95 35.7% - - - HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases RASD2 23551 genome.wustl.edu 37 22 35947819 35947819 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014310.3 +1 reviewed p.E181K 1.000 57 0% 45 31.1% 2 0% benign(0.001) tolerated(0.1) neutral(0.286) HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540 APOL5 80831 genome.wustl.edu 37 22 36124810 36124810 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_030642.1 +1 reviewed p.Q389H 0.015 100 0% 52 26.9% 0 - possibly_damaging(0.539) - - NULL APOL4 80832 genome.wustl.edu 37 22 36587766 36587766 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000352371 -1 known p.R137I 0.002 159 0% 65 20% 18 27.7% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_ApoL MYH9 4627 genome.wustl.edu 37 22 36745263 36745263 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002473.4 -1 reviewed p.D7N 1.000 243 0% 217 22.6% 45 31.1% benign(0.003) tolerated(0.08) neutral(0.300) NULL TXN2 25828 genome.wustl.edu 37 22 36863944 36863944 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012473.3 -1 reviewed p.V136 1.000 162 0% 121 27.3% 243 40.7% - - - superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin EIF3D 8664 genome.wustl.edu 37 22 36919229 36919229 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000412520 -1 known p.A164 0.000 362 0% 240 11.3% 0 - - - - NULL TEX33 339669 genome.wustl.edu 37 22 37396018 37396018 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178552.3 -1 validated p.K81R 0.002 253 0% 189 29.6% 0 - benign(0) tolerated(0.75) neutral(0.002) NULL C1QTNF6 114904 genome.wustl.edu 37 22 37578506 37578506 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031910.3 -1 validated p.L187 0.001 90 0% 65 18.5% 72 34.7% - - - HMMPfam_C1q,superfamily_TNF_like C1QTNF6 114904 genome.wustl.edu 37 22 37581308 37581308 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031910.3 -1 validated p.P80H 0.557 88 0% 57 24.6% 39 41% benign(0.032) tolerated(0.08) neutral(0.301) NULL MFNG 4242 genome.wustl.edu 37 22 37875474 37875474 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002405.3 -1 reviewed p.R157K 0.001 95 0% 91 24.2% 12 8.3% benign(0) tolerated(0.54) neutral(0.007) HMMPfam_Fringe CARD10 29775 genome.wustl.edu 37 22 37903887 37903887 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014550.3 -1 reviewed p.R380 1.000 202 0% 201 24.4% 20 80% - - - NULL CARD10 29775 genome.wustl.edu 37 22 37912213 37912213 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014550.3 -1 reviewed p.Q156* 1.000 25 0% 22 31.8% 2 0% - - - NULL LGALS1 3956 genome.wustl.edu 37 22 38074528 38074528 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002305.3 +1 reviewed p.C43Y 1.000 45 0% 37 13.5% 1210 15.5% possibly_damaging(0.665) tolerated(0.19) neutral(0.285) HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases TRIOBP 11078 genome.wustl.edu 37 22 38097397 38097397 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039141.2 +1 reviewed p.L9M 0.006 275 0% 219 22.8% 1 0% benign(0.073) tolerated(0.25) neutral(0.042) NULL TRIOBP 11078 genome.wustl.edu 37 22 38121176 38121176 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039141.2 +1 reviewed p.C871 0.977 219 0.5% 186 23.7% 0 - - - - NULL TRIOBP 11078 genome.wustl.edu 37 22 38122112 38122112 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039141.2 +1 reviewed p.E1183D 1.000 105 0% 133 21.1% 1 0% probably_damaging(0.995) tolerated(0.06) deleterious(0.780) NULL H1F0 3005 genome.wustl.edu 37 22 38201758 38201758 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005318.3 +1 reviewed p.K69 1.000 80 0% 175 26.3% 191 42.9% - - - "HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain" GCAT 23464 genome.wustl.edu 37 22 38211144 38211144 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014291.3 +1 reviewed p.L196 1.000 68 0% 88 33% 49 36.7% - - - HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major GALR3 8484 genome.wustl.edu 37 22 38219661 38219661 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003614.1 +1 reviewed p.Y83C 1.000 124 0% 142 19% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MICALL1 85377 genome.wustl.edu 37 22 38321878 38321878 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000454685 +1 known p.G9* 0.221 60 0% 42 19% 17 35.2% benign(0.071) tolerated(0.51) neutral(0.014) NULL BAIAP2L2 80115 genome.wustl.edu 37 22 38503865 38503865 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025045.4 -1 validated p.E90D 1.000 205 0% 190 15.3% 101 19.8% benign(0.32) tolerated(0.29) neutral(0.129) HMMPfam_IMD PLA2G6 8398 genome.wustl.edu 37 22 38519198 38519198 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003560.2 -1 reviewed p.A499T 1.000 115 0% 92 22.8% 8 50% possibly_damaging(0.555) tolerated(0.11) neutral(0.461) HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like KCNJ4 3761 genome.wustl.edu 37 22 38823383 38823383 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004981.1 -1 reviewed p.R252H 1.000 109 0% 134 25.4% 1 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_IRK,superfamily_Ig_E-set KDELR3 11015 genome.wustl.edu 37 22 38877359 38877359 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016657.1 +1 reviewed p.N165S 1.000 398 0% 251 11.2% 16 18.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ER_lumen_recept DDX17 10521 genome.wustl.edu 37 22 38881962 38881962 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098504.1 -1 reviewed p.P725H 0.997 284 0% 161 27.3% 75 41.3% unknown(0) deleterious(0) - NULL ENSG00000184949 0 genome.wustl.edu 37 22 38993317 38993317 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000355830 -1 known p.C475Y 0.000 339 0% 126 16.7% 0 - benign(0.284) tolerated(0.09) neutral(0.383) NULL CBY1 25776 genome.wustl.edu 37 22 39069225 39069225 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002880.1 +1 reviewed p.S122N 0.004 330 0% 240 24.2% 59 33.8% benign(0.002) tolerated(0.54) neutral(0.007) NULL SUN2 25777 genome.wustl.edu 37 22 39132275 39132275 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015374.1 -1 validated p.H717 0.853 98 0% 92 22.8% 67 26.8% - - - NULL APOBEC3C 27350 genome.wustl.edu 37 22 39414043 39414043 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014508.2 +1 reviewed p.D149E 0.000 249 0.4% 214 24.3% 47 25.5% benign(0) deleterious(0.03) neutral(0.364) HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like APOBEC3D 140564 genome.wustl.edu 37 22 39427762 39427762 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152426.3 +1 reviewed p.L276 0.004 298 0% 264 12.1% 18 16.6% - - - HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine deaminase-like SYNGR1 9145 genome.wustl.edu 37 22 39770532 39770532 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004711.4 +1 reviewed p.A104V 0.995 28 0% 21 28.6% 26 38.4% benign(0.054) tolerated(1) neutral(0.004) HMMPfam_MARVEL TAB1 10454 genome.wustl.edu 37 22 39813853 39813853 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006116.2 +1 reviewed p.V183 0.006 83 0% 68 30.9% 24 50% - - - HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C SMCR7L 54471 genome.wustl.edu 37 22 39907423 39907423 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019008.4 +1 validated p.A42T 1.000 81 0% 56 25% 15 20% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ENTHD1 150350 genome.wustl.edu 37 22 40161568 40161568 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152512.3 -1 provisional p.D293E 0.122 145 0% 41 19.5% 0 - benign(0.073) deleterious(0) neutral(0.450) NULL TNRC6B 23112 genome.wustl.edu 37 22 40642025 40642025 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015088.2 +1 validated p.K4 1.000 583 0% 159 22.6% 3 33.3% - - - NULL TNRC6B 23112 genome.wustl.edu 37 22 40661668 40661668 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000446273 +1 known p.G221D 1.000 125 0% 144 22.9% 1 0% - - - NULL TNRC6B 23112 genome.wustl.edu 37 22 40666285 40666285 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001024843.1 +1 validated e6+1 1.000 74 0% 58 25.9% 0 - - - - - TNRC6B 23112 genome.wustl.edu 37 22 40719092 40719092 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015088.2 +1 validated p.S1673 0.994 58 0% 50 24% 10 50% - - - NULL ADSL 158 genome.wustl.edu 37 22 40746038 40746038 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000026.2 +1 reviewed p.T119N 1.000 249 0% 240 27.9% 66 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Lyase_1,superfamily_L-aspartase-like SGSM3 27352 genome.wustl.edu 37 22 40801816 40801816 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015705.4 +1 validated p.R261H 0.951 22 0% 22 31.8% 71 38% benign(0.028) tolerated(0.06) neutral(0.324) HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p MKL1 57591 genome.wustl.edu 37 22 40807616 40807616 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020831.3 -1 validated p.P858 0.869 111 0% 93 23.7% 55 23.6% - - - NULL MKL1 57591 genome.wustl.edu 37 22 40814817 40814817 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020831.3 -1 validated p.R542Q 1.000 16 0% 13 38.5% 6 50% benign(0.017) tolerated(0.62) neutral(0.005) NULL MCHR1 2847 genome.wustl.edu 37 22 41076992 41076992 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005297.3 +1 reviewed p.I110T 1.000 179 0% 128 32% 1 0% unknown(0) deleterious(0) - superfamily_Family A G protein-coupled receptor-like XPNPEP3 63929 genome.wustl.edu 37 22 41320407 41320407 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022098.2 +1 validated p.L426 0.597 355 0% 165 20.6% 7 42.8% - - - HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase L3MBTL2 83746 genome.wustl.edu 37 22 41613172 41613172 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031488.4 +1 validated p.S189I 1.000 151 0% 127 26.8% 13 30.7% possibly_damaging(0.722) deleterious(0.01) deleterious(0.667) HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT L3MBTL2 83746 genome.wustl.edu 37 22 41615452 41615452 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000449635 +1 known p.D158Y 0.999 294 0% 200 20% 13 30.7% - - - HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT L3MBTL2 83746 genome.wustl.edu 37 22 41626196 41626196 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031488.4 +1 validated p.A687T 0.004 53 0% 68 16.2% 64 37.5% benign(0.002) tolerated(0.15) neutral(0.241) NULL TOB2 10766 genome.wustl.edu 37 22 41833192 41833192 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016272.3 -1 validated p.S53Y 1.000 103 0% 89 18% 9 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_BTG,HMMSmart_btg1,PatternScan_BTG_1 ACO2 50 genome.wustl.edu 37 22 41903960 41903960 + Silent SNP C C T rs138373868 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098.2 +1 reviewed p.S113 0.196 37 0% 26 19.2% 59 33.8% - - - HMMPfam_Aconitase,superfamily_Aconitase_N ACO2 50 genome.wustl.edu 37 22 41907953 41907953 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098.2 +1 reviewed p.G169E 1.000 158 0% 128 28.1% 63 46% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aconitase,superfamily_Aconitase_N ACO2 50 genome.wustl.edu 37 22 41919217 41919217 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098.2 +1 reviewed p.I435 1.000 256 0% 222 27.9% 108 30.5% - - - HMMPfam_Aconitase,superfamily_Aconitase_N ACO2 50 genome.wustl.edu 37 22 41922402 41922402 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098.2 +1 reviewed p.R633H 1.000 77 0% 58 10.3% 269 18.2% benign(0.009) tolerated(0.33) neutral(0.025) HMMPfam_Aconitase_C,superfamily_Aconitase/3IPM_dehydase_swvl POLR3H 171568 genome.wustl.edu 37 22 41925341 41925341 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018050.2 -1 validated e6-1 1.000 139 0% 102 24.5% 7 42.8% - - - - POLR3H 171568 genome.wustl.edu 37 22 41928741 41928741 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018050.2 -1 validated p.R73C 1.000 131 0% 128 14.1% 62 11.2% probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_IG_MHC,HMMPfam_RNA_pol_Rpb7_N,superfamily_N-terminal heterodimerisation domain of RBP4 (RpoE) CSDC2 27254 genome.wustl.edu 37 22 41969730 41969730 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014460.3 +1 validated p.G83D 1.000 193 0% 170 22.4% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CSD,HMMSmart_CSP,superfamily_Nucleic_acid_OB,PatternScan_COLD_SHOCK XRCC6 2547 genome.wustl.edu 37 22 42059625 42059625 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001469.3 +1 reviewed e12-1 0.992 129 0% 117 20.5% 0 - - - - - MEI1 150365 genome.wustl.edu 37 22 42180644 42180644 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152513.3 +1 validated p.R1068* 0.980 86 0% 61 24.6% 8 0% - - - NULL CCDC134 79879 genome.wustl.edu 37 22 42209354 42209354 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024821.2 +1 validated p.N133D 1.000 167 0% 108 15.7% 2 50% probably_damaging(0.998) tolerated(0.28) deleterious(0.506) NULL CENPM 79019 genome.wustl.edu 37 22 42342501 42342501 + Splice_Site SNP C C A rs62240990 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024053.3 -1 validated e2-1 1.000 35 0% 23 26.1% 10 70% - - - - WBP2NL 164684 genome.wustl.edu 37 22 42418278 42418278 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152613.2 +1 validated p.T144 0.000 591 0% 421 24.9% 1 100% - - - HMMPfam_WWbp WBP2NL 164684 genome.wustl.edu 37 22 42422927 42422927 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152613.2 +1 validated p.Y224 0.000 175 0.6% 177 26% 2 50% - - - NULL FAM109B 150368 genome.wustl.edu 37 22 42473729 42473729 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002034.2 +1 validated p.L144 0.008 55 0% 58 13.8% 7 14.2% - - - NULL C22orf32 91689 genome.wustl.edu 37 22 42477948 42477948 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033318.3 +1 predicted p.R69H 1.000 455 0.2% 485 21.2% 118 23.7% benign(0.386) - - HMMPfam_DDDD CYP2D6 1565 genome.wustl.edu 37 22 42523476 42523476 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000106.4 -1 reviewed p.I382 0.458 176 0% 166 13.9% 4 0% - - - HMMPfam_p450,superfamily_Cytochrome_P450 TCF20 6942 genome.wustl.edu 37 22 42605940 42605940 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005650.1 -1 reviewed p.R1791H 1.000 90 0% 71 18.3% 34 50% possibly_damaging(0.911) deleterious(0.01) deleterious(0.768) NULL TCF20 6942 genome.wustl.edu 37 22 42607583 42607583 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005650.1 -1 reviewed p.E1243D 0.994 411 0.5% 187 21.9% 22 63.6% probably_damaging(0.988) tolerated(0.14) deleterious(0.687) NULL RRP7A 27341 genome.wustl.edu 37 22 42914037 42914037 + Missense_Mutation SNP G G T rs645556 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015703.4 -1 validated p.L64I 1.000 217 0% 237 11.8% 131 18.3% benign(0.188) tolerated(0.25) neutral(0.054) HMMSmart_RRM,superfamily_SSF54928 SERHL2 253190 genome.wustl.edu 37 22 42967167 42967167 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014509.3 +1 provisional p.A230V 0.000 242 0% 259 22.4% 4 25% benign(0.001) tolerated(0.05) neutral(0.345) superfamily_alpha/beta-Hydrolases SERHL2 253190 genome.wustl.edu 37 22 42967168 42967168 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000340239 +1 known p.R192H 0.000 244 0% 261 26.1% 4 0% benign(0.002) tolerated(0.18) neutral(0.056) NULL POLDIP3 84271 genome.wustl.edu 37 22 42991586 42991586 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032311.3 -1 reviewed p.T283I 1.000 306 0% 242 20.2% 41 43.9% probably_damaging(0.995) tolerated(0.33) deleterious(0.482) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD CYB5R3 1727 genome.wustl.edu 37 22 43024216 43024216 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000398.6 -1 reviewed p.Q135H 0.920 142 0% 154 25.3% 162 19.1% unknown(0) - - HMMPfam_FAD_binding_6,superfamily_Riboflavin synthase domain-like ARFGAP3 26286 genome.wustl.edu 37 22 43218333 43218333 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014570.4 -1 reviewed p.A252V 0.034 640 0% 303 17.2% 15 46.6% benign(0) tolerated(0.97) - NULL TTLL1 25809 genome.wustl.edu 37 22 43442572 43442572 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012263.4 -1 validated p.A329V 0.996 471 0% 298 21.5% 41 48.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like TTLL1 25809 genome.wustl.edu 37 22 43455464 43455464 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012263.4 -1 validated p.R273C 0.998 85 0% 64 12.5% 33 21.2% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like MCAT 27349 genome.wustl.edu 37 22 43529112 43529112 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173467.4 -1 reviewed p.S370 0.000 106 0% 112 24.1% 116 57.7% - - - HMMPfam_Acyl_transf_1 TTLL12 23170 genome.wustl.edu 37 22 43579012 43579012 + Missense_Mutation SNP G G T rs75721440 byCluster;byFrequency;by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015140.3 -1 validated p.S107R 0.304 131 0.8% 143 33.6% 36 47.2% possibly_damaging(0.929) tolerated(0.38) neutral(0.394) NULL SCUBE1 80274 genome.wustl.edu 37 22 43610139 43610139 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173050.2 -1 validated p.D670 0.948 21 0% 33 18.2% 4 0% - - - superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3 MPPED1 758 genome.wustl.edu 37 22 43831047 43831047 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001044370.1 +1 validated p.Q106H 1.000 84 0% 89 27% 0 - probably_damaging(0.967) tolerated(0.07) deleterious(0.728) HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases SULT4A1 25830 genome.wustl.edu 37 22 44234874 44234874 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014351.3 -1 reviewed e4-1 1.000 105 0% 118 25.4% 0 - - - - - PNPLA5 150379 genome.wustl.edu 37 22 44285222 44285222 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138814.3 -1 reviewed p.P230L 0.925 145 0% 165 19.4% 0 - possibly_damaging(0.808) deleterious(0) deleterious(0.748) NULL PNPLA5 150379 genome.wustl.edu 37 22 44285368 44285368 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138814.3 -1 reviewed p.P181 0.000 277 0.7% 300 13.3% 0 - - - - HMMPfam_Patatin PARVG 64098 genome.wustl.edu 37 22 44589691 44589691 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001137605.1 +1 validated p.D191N 0.116 469 0% 402 28.4% 45 22.2% benign(0.249) tolerated(0.48) neutral(0.036) superfamily_Calponin-homology domain CH-domain KIAA1644 85352 genome.wustl.edu 37 22 44681523 44681523 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000266255 -1 known p.Q35* 1.000 264 0% 179 25.1% 2 0% - - - NULL LDOC1L 84247 genome.wustl.edu 37 22 44893054 44893054 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032287.2 -1 validated p.S128Y 0.999 93 0% 94 19.1% 5 40% probably_damaging(0.964) deleterious(0.02) deleterious(0.789) NULL ENSG00000187012 0 genome.wustl.edu 37 22 44967981 44967981 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000334566 +1 known p.A102D 0.000 211 0% 112 22.3% 0 - unknown(0) - - NULL PRR5-ARHGAP8 553158 genome.wustl.edu 37 22 45218317 45218317 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000515632 +1 known p.T205M 0.006 306 0% 323 19.8% 28 57.1% - - - HMMSmart_SM00516,superfamily_CRAL/TRIO domain PRR5-ARHGAP8 553158 genome.wustl.edu 37 22 45243898 45243898 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181334.4 +1 reviewed p.T275N 0.391 41 0% 38 28.9% 41 41.4% possibly_damaging(0.459) tolerated(0.4) neutral(0.166) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP SMC1B 27127 genome.wustl.edu 37 22 45758796 45758796 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_148674.3 -1 validated p.K844T 0.996 713 0% 307 24.4% 0 - possibly_damaging(0.813) tolerated(0.2) neutral(0.356) HMMPfam_SMC_N,superfamily_SSF52540 FBLN1 2192 genome.wustl.edu 37 22 45960820 45960820 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006485.3 +1 reviewed p.C585Y 0.000 179 0.6% 199 24.1% 0 - benign(0.003) deleterious(0.04) neutral(0.349) NULL ATXN10 25814 genome.wustl.edu 37 22 46085606 46085606 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013236.3 +1 reviewed p.R44M 0.677 364 0% 247 11.7% 56 19.6% probably_damaging(0.964) deleterious(0.01) deleterious(0.812) superfamily_ARM-type_fold PKDREJ 10343 genome.wustl.edu 37 22 46652659 46652659 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006071.1 -1 reviewed p.S2187 0.000 167 0.6% 193 20.2% 0 - - - - NULL PKDREJ 10343 genome.wustl.edu 37 22 46653595 46653595 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006071.1 -1 reviewed p.T1875 0.942 343 0.3% 431 22% 0 - - - - HMMPfam_PKD_channel PKDREJ 10343 genome.wustl.edu 37 22 46656943 46656943 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006071.1 -1 reviewed p.I759 0.000 113 0% 219 24.2% 0 - - - - HMMPfam_REJ TTC38 55020 genome.wustl.edu 37 22 46669895 46669895 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422713 +1 known p.R49K 0.610 59 0% 59 23.7% 24 41.6% - - - superfamily_TPR-like TTC38 55020 genome.wustl.edu 37 22 46684356 46684356 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017931.2 +1 validated p.P318H 0.805 48 0% 59 18.6% 47 31.9% benign(0.003) tolerated(0.29) neutral(0.029) NULL GTSE1 51512 genome.wustl.edu 37 22 46722347 46722347 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016426.6 +1 reviewed p.S507I 0.998 106 0% 70 28.6% 16 43.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CELSR1 9620 genome.wustl.edu 37 22 46773009 46773009 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014246.1 -1 reviewed p.L2511 0.920 120 0% 112 25.9% 46 36.9% - - - HMMPfam_7tm_2 CELSR1 9620 genome.wustl.edu 37 22 46776689 46776689 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014246.1 -1 reviewed p.L2418M 0.944 65 0% 65 26.2% 21 47.6% possibly_damaging(0.609) tolerated(0.12) deleterious(0.472) HMMPfam_GPS,HMMSmart_SM00303,superfamily_Concanavalin A-like lectins/glucanases CELSR1 9620 genome.wustl.edu 37 22 46792522 46792522 + Silent SNP G G A rs144990969 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014246.1 -1 reviewed p.Y1941 0.995 40 0% 39 25.6% 41 48.7% - - - HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,superfamily_EGF/Laminin GRAMD4 23151 genome.wustl.edu 37 22 47022754 47022754 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015124.2 +1 validated p.D20N 1.000 181 0% 197 25.4% 9 22.2% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL GRAMD4 23151 genome.wustl.edu 37 22 47061592 47061592 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000456069 +1 known p.P89S 1.000 159 0% 184 28.8% 22 31.8% - - - NULL CERK 64781 genome.wustl.edu 37 22 47108066 47108066 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022766.5 -1 validated p.I168 0.959 740 0% 405 26.2% 15 33.3% - - - HMMPfam_DAGK_cat,HMMSmart_DAGKc TBC1D22A 25771 genome.wustl.edu 37 22 47370194 47370194 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014346.1 +1 provisional p.E342K 1.000 43 0% 39 30.8% 34 41.1% benign(0) tolerated(0.07) neutral(0.319) HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p BRD1 23774 genome.wustl.edu 37 22 50187700 50187700 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014577.1 -1 reviewed p.P781S 0.004 36 0% 52 19.2% 19 21% probably_damaging(0.988) tolerated(0.38) neutral(0.455) NULL BRD1 23774 genome.wustl.edu 37 22 50191478 50191478 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014577.1 -1 reviewed p.P691 0.199 26 0% 32 40.6% 17 41.1% - - - NULL ALG12 79087 genome.wustl.edu 37 22 50297715 50297715 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024105.3 -1 reviewed e9-1 1.000 113 0% 96 21.9% 8 87.5% - - - - ALG12 79087 genome.wustl.edu 37 22 50303694 50303694 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024105.3 -1 reviewed p.R171H 0.879 49 0% 32 31.2% 35 45.7% benign(0.272) tolerated(0.13) neutral(0.282) HMMPfam_Glyco_transf_22 TUBGCP6 85378 genome.wustl.edu 37 22 50656361 50656361 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020461.3 -1 reviewed p.H1785R 1.000 41 0% 37 21.6% 18 44.4% benign(0.023) tolerated(0.66) neutral(0.004) NULL TUBGCP6 85378 genome.wustl.edu 37 22 50656463 50656463 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020461.3 -1 reviewed p.L1751H 1.000 45 0% 47 31.9% 21 23.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TUBGCP6 85378 genome.wustl.edu 37 22 50657050 50657050 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020461.3 -1 reviewed e22-1 1.000 50 0% 38 21.1% 9 100% - - - - TUBGCP6 85378 genome.wustl.edu 37 22 50662602 50662602 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020461.3 -1 reviewed p.K746N 0.996 93 0% 172 22.7% 13 15.3% probably_damaging(0.968) deleterious(0.01) deleterious(0.816) HMMPfam_Spc97_Spc98 TUBGCP6 85378 genome.wustl.edu 37 22 50666409 50666409 + Missense_Mutation SNP C C T rs182347943 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020461.3 -1 reviewed p.V447I 0.996 89 0% 103 11.7% 15 6.6% probably_damaging(0.975) tolerated(0.14) deleterious(0.666) HMMPfam_Spc97_Spc98 MAPK12 6300 genome.wustl.edu 37 22 50694561 50694561 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002969.3 -1 reviewed p.Y191C 1.000 48 0% 76 26.3% 17 41.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase MAPK11 5600 genome.wustl.edu 37 22 50704717 50704717 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002751.5 -1 reviewed p.R234C 0.992 125 0% 209 17.7% 11 9% probably_damaging(1) tolerated(0.15) deleterious(0.741) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PLXNB2 23654 genome.wustl.edu 37 22 50726405 50726405 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012401.2 -1 validated p.S481F 0.070 12 0% 10 50% 21 76.1% possibly_damaging(0.924) deleterious(0.04) deleterious(0.722) HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold PLXNB2 23654 genome.wustl.edu 37 22 50728216 50728216 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012401.2 -1 validated p.C266* 0.211 86 0% 80 28.7% 43 11.6% - - - HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema FAM116B 414918 genome.wustl.edu 37 22 50752273 50752273 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001794.3 -1 validated p.R391 0.897 103 0% 128 22.7% 38 34.2% - - - HMMPfam_DUF1630 FAM116B 414918 genome.wustl.edu 37 22 50754517 50754517 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001794.3 -1 validated e8-1 1.000 68 0% 131 26.7% 0 - - - - - PPP6R2 9701 genome.wustl.edu 37 22 50832419 50832419 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014678.3 +1 validated p.M28V 0.998 149 0% 71 15.5% 27 18.5% possibly_damaging(0.858) deleterious(0.01) deleterious(0.737) NULL PPP6R2 9701 genome.wustl.edu 37 22 50879288 50879288 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014678.3 +1 validated p.V777 0.002 82 0% 111 14.4% 46 23.9% - - - NULL MIOX 55586 genome.wustl.edu 37 22 50926445 50926445 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017584.5 +1 validated p.A103V 0.976 74 0% 79 20.3% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF706 MIOX 55586 genome.wustl.edu 37 22 50926760 50926760 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017584.5 +1 validated p.G133R 0.976 231 0% 274 13.1% 2 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_DUF706 LMF2 91289 genome.wustl.edu 37 22 50943489 50943489 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033200.2 -1 validated p.S392R 1.000 43 0% 63 11.1% 50 12% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1222 LMF2 91289 genome.wustl.edu 37 22 50945333 50945333 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033200.2 -1 validated p.Q51K 0.998 17 0% 25 20% 43 30.2% possibly_damaging(0.442) tolerated(0.41) neutral(0.159) NULL NCAPH2 29781 genome.wustl.edu 37 22 50960444 50960444 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152299.3 +1 reviewed p.R380W 0.159 160 0% 190 26.3% 108 48.1% possibly_damaging(0.683) tolerated(0.1) deleterious(0.530) HMMPfam_DUF1032 NCAPH2 29781 genome.wustl.edu 37 22 50960445 50960445 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152299.3 +1 reviewed p.R380Q 0.188 156 0% 192 19.8% 107 39.2% probably_damaging(0.999) tolerated(0.41) deleterious(0.505) HMMPfam_DUF1032 SCO2 9997 genome.wustl.edu 37 22 50962321 50962321 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005138.2 -1 reviewed p.V174I 0.032 62 0% 82 9.8% 190 13.6% benign(0.115) tolerated(0.32) neutral(0.033) HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd TYMP 1890 genome.wustl.edu 37 22 50965822 50965822 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000419305 -1 known p.D281Y 0.000 33 0% 56 30.4% 16 6.2% - - - HMMPfam_Glycos_transf_3 TYMP 1890 genome.wustl.edu 37 22 50966943 50966943 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113755.1 -1 reviewed p.Q172* 1.000 177 0% 249 11.6% 513 2.1% - - - HMMPfam_Glycos_transf_3,superfamily_Glyco_trans_3 TYMP 1890 genome.wustl.edu 37 22 50967759 50967759 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000426603 -1 known p.A127V 1.000 44 0% 50 10% 405 7.4% - - - NULL SYCE3 644186 genome.wustl.edu 37 22 50989713 50989713 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123225.1 -1 predicted p.N76K 1.000 91 0% 121 22.3% 17 41.1% benign(0.081) deleterious(0) neutral(0.451) NULL SYCE3 644186 genome.wustl.edu 37 22 50994758 50994758 + Missense_Mutation SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123225.1 -1 predicted p.E26V 1.000 706 0% 798 25.2% 9 22.2% benign(0.201) deleterious(0) neutral(0.464) NULL CPT1B 1375 genome.wustl.edu 37 22 51008773 51008773 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145135.1 -1 reviewed p.F697 0.875 94 0% 115 26.1% 41 36.5% - - - HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases CPT1B 1375 genome.wustl.edu 37 22 51012828 51012828 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145135.1 -1 reviewed p.V302 1.000 193 0% 264 23.5% 34 23.5% - - - HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases CPT1B 1375 genome.wustl.edu 37 22 51015795 51015795 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145135.1 -1 reviewed p.S80Y 1.000 142 0% 164 17.1% 9 66.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CHKB 1120 genome.wustl.edu 37 22 51018831 51018831 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005198.4 -1 reviewed p.S231Y 0.105 486 0% 566 23% 40 17.5% benign(0.001) tolerated(0.1) neutral(0.286) HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like) MAPK8IP2 23542 genome.wustl.edu 37 22 51044080 51044080 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012324.3 +1 reviewed p.A644D 1.000 44 0% 73 15.1% 16 25% - - - NULL KIR2DL5B 553128 genome.wustl.edu 37 GL000209.1 18663 18663 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000400875 +1 known p.T321 NULL 780 0% 381 39.4% 0 - - - - NULL KIR2DL5B 553128 genome.wustl.edu 37 GL000209.1 88481 88481 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000400846 +1 known p.L81F NULL 162 0% 108 50% 0 - benign(0.007) tolerated(0.31) neutral(0.027) HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 ENSG00000211459 0 genome.wustl.edu 37 MT 653 654 + RNA INS - - T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000389680 +1 known NULL NULL - - - - - - - - - - PLCXD1 55344 genome.wustl.edu 37 X 207318 207318 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018390.3 +1 reviewed p.L90 0.004 221 0% 208 22.1% 18 33.3% - - - superfamily_PLC-like_Pdiesterase_TIM-brl GTPBP6 8225 genome.wustl.edu 37 X 224093 224093 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000429643 -1 known p.A248V 0.004 84 0% 102 15.7% 106 23.5% benign(0.008) tolerated(0.3) neutral(0.029) superfamily_P-loop containing nucleoside triphosphate hydrolases GTPBP6 8225 genome.wustl.edu 37 X 228170 228170 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000400701 -1 known p.R118C 1.000 101 0% 57 17.5% 166 25.9% - - - HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases PPP2R3B 28227 genome.wustl.edu 37 X 308378 308378 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013239.4 -1 reviewed p.G187 0.977 60 0% 38 21.1% 25 24% - - - superfamily_EF-hand CSF2RA 1438 genome.wustl.edu 37 X 1409307 1409307 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006140.4 +1 reviewed p.S184L 0.001 606 0% 402 23.9% 7 85.7% probably_damaging(0.993) tolerated(0.07) deleterious(0.769) superfamily_Fibronectin type III CSF2RA 1438 genome.wustl.edu 37 X 1424366 1424366 + Missense_Mutation SNP G G A rs56960778 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_172247.2 +1 reviewed p.R325H 0.012 466 0% 292 24% 18 11.1% possibly_damaging(0.535) tolerated(0.18) neutral(0.237) NULL IL3RA 3563 genome.wustl.edu 37 X 1464255 1464255 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002183.2 +1 reviewed p.Q37 0.001 917 0% 550 21.8% 12 16.6% - - - NULL SLC25A6 293 genome.wustl.edu 37 X 1505572 1505572 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001636.3 -1 reviewed p.A274T 1.000 423 0.2% 426 22.3% 345 3.1% possibly_damaging(0.82) deleterious(0.01) deleterious(0.716) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr ASMTL 8623 genome.wustl.edu 37 X 1536959 1536959 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004192.3 -1 reviewed p.Q477* 0.145 271 0% 237 24.5% 66 0% - - - HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases P2RY8 286530 genome.wustl.edu 37 X 1584800 1584800 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178129.4 -1 reviewed p.L218I 0.998 41 0% 18 33.3% 0 - benign(0.018) tolerated(0.46) neutral(0.013) HMMPfam_7tm_1,superfamily_SSF81321 P2RY8 286530 genome.wustl.edu 37 X 1584906 1584906 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178129.4 -1 reviewed p.T182 0.433 51 0% 46 23.9% 2 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 P2RY8 286530 genome.wustl.edu 37 X 1585419 1585419 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178129.4 -1 reviewed p.N11 1.000 30 0% 22 31.8% 1 0% - - - superfamily_SSF81321 AKAP17A 8227 genome.wustl.edu 37 X 1714399 1714399 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005088.2 +1 validated p.A295 0.566 787 0% 653 23.3% 13 46.1% - - - NULL AKAP17A 8227 genome.wustl.edu 37 X 1718176 1718176 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005088.2 +1 validated p.R335C 0.313 244 0% 227 15% 41 34.1% unknown(0) deleterious(0) - NULL ASMT 438 genome.wustl.edu 37 X 1755375 1755375 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004043.2 +1 reviewed p.L278 0.995 605 0.2% 362 20.4% 0 - - - - HMMPfam_Methyltransf_2,superfamily_SSF53335 DHRSX 207063 genome.wustl.edu 37 X 2161132 2161132 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145177.2 -1 validated p.D246N 1.000 270 0% 97 16.5% 80 37.5% benign(0.001) tolerated(0.57) neutral(0.006) superfamily_NAD(P)-bd ARSH 347527 genome.wustl.edu 37 X 2933329 2933329 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011719.1 +1 validated p.R220H 0.000 551 0% 270 22.2% 0 - benign(0.011) tolerated(0.6) neutral(0.005) HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core ARSF 416 genome.wustl.edu 37 X 3021810 3021810 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004042.3 +1 reviewed p.K370 1.000 253 0% 78 23.1% 0 - - - - HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like MXRA5 25878 genome.wustl.edu 37 X 3239465 3239465 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015419.3 -1 reviewed p.E1421K 0.000 147 0% 141 25.5% 4 50% benign(0.001) tolerated(0.42) neutral(0.014) NULL MXRA5 25878 genome.wustl.edu 37 X 3241610 3241610 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015419.3 -1 reviewed p.D706Y 0.070 173 0% 198 23.2% 0 - possibly_damaging(0.922) deleterious(0) deleterious(0.816) NULL MXRA5 25878 genome.wustl.edu 37 X 3242312 3242312 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015419.3 -1 reviewed p.R472W 0.025 139 0% 96 26% 3 66.6% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL LOC100128355 100128355 genome.wustl.edu 37 X 3635254 3635254 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343797.1 +1 model p.A90V 1.000 43 0% 28 32.1% 0 - - - - HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like NLGN4X 57502 genome.wustl.edu 37 X 5821436 5821436 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020742.2 -1 reviewed p.A428V 1.000 90 0% 89 18% 9 44.4% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases STS 412 genome.wustl.edu 37 X 7175395 7175395 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000351.4 +1 reviewed p.V89I 0.028 89 0% 49 10.2% 3 0% benign(0) tolerated(1) - HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core PNPLA4 8228 genome.wustl.edu 37 X 7880131 7880131 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142389.1 -1 reviewed p.L139I 0.604 239 0% 107 15.9% 80 32.5% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like FAM9A 171482 genome.wustl.edu 37 X 8763242 8763242 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174951.3 -1 validated p.E236D 0.016 218 0% 273 20.1% 0 - unknown(0) - - NULL SHROOM2 357 genome.wustl.edu 37 X 9862775 9862775 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001649.2 +1 reviewed p.S276N 0.000 68 0% 42 26.2% 4 0% possibly_damaging(0.722) tolerated(0.06) deleterious(0.585) NULL SHROOM2 357 genome.wustl.edu 37 X 9863180 9863180 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001649.2 +1 reviewed p.S411Y 0.679 57 0% 52 23.1% 2 0% probably_damaging(0.996) tolerated(0.06) deleterious(0.784) NULL SHROOM2 357 genome.wustl.edu 37 X 9905373 9905373 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001649.2 +1 reviewed p.Y1263H 0.995 52 0% 38 23.7% 1 100% possibly_damaging(0.733) deleterious(0) deleterious(0.713) NULL WWC3 55841 genome.wustl.edu 37 X 10102499 10102499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015691.3 +1 validated p.L876F 0.381 218 0% 183 15.3% 12 0% possibly_damaging(0.864) tolerated(0.07) deleterious(0.653) NULL CLCN4 1183 genome.wustl.edu 37 X 10176084 10176084 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001830.3 +1 reviewed e7-1 1.000 120 0% 82 20.7% 0 - - - - - CLCN4 1183 genome.wustl.edu 37 X 10181783 10181783 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001830.3 +1 reviewed p.E547K 1.000 194 0% 168 25% 0 - possibly_damaging(0.494) tolerated(0.38) neutral(0.182) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel HCCS 3052 genome.wustl.edu 37 X 11135417 11135417 + Missense_Mutation SNP G G C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001122608.2 +1 reviewed p.D95H 0.998 467 0% 468 13.7% 36 50% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) HMMPfam_Cyto_heme_lyase ARHGAP6 395 genome.wustl.edu 37 X 11174698 11174698 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013427.2 -1 reviewed p.D620N 0.999 364 0% 117 19.7% 0 - probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL AMELX 265 genome.wustl.edu 37 X 11316788 11316788 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182680.1 +1 reviewed p.P103S 0.998 352 0.3% 273 10.3% 0 - unknown(0) tolerated(0.12) - HMMPfam_Amelogenin,HMMSmart_SM00818 ARHGAP6 395 genome.wustl.edu 37 X 11682471 11682471 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013427.2 -1 reviewed p.G160R 0.152 61 0% 75 18.7% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL FRMPD4 9758 genome.wustl.edu 37 X 12734466 12734466 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014728.3 +1 reviewed p.L630I 0.004 151 0% 97 13.4% 0 - benign(0.003) deleterious(0.03) neutral(0.364) NULL FRMPD4 9758 genome.wustl.edu 37 X 12734679 12734679 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014728.3 +1 reviewed p.L701I 0.334 105 0% 57 19.3% 0 - probably_damaging(0.981) deleterious(0.03) deleterious(0.790) NULL TLR8 51311 genome.wustl.edu 37 X 12939357 12939357 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138636.4 +1 reviewed p.S733Y 0.003 352 0% 105 16.2% 4 25% possibly_damaging(0.86) deleterious(0.03) deleterious(0.697) HMMPfam_LRR_1,superfamily_SSF52058 ATXN3L 92552 genome.wustl.edu 37 X 13337985 13337985 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135995.1 -1 validated p.L23 0.919 292 0% 88 11.4% 0 - - - - HMMPfam_Josephin RAB9A 9367 genome.wustl.edu 37 X 13726992 13726992 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004251.3 +1 provisional p.E43* 1.000 199 0% 92 13% 41 48.7% - - - HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases GLRA2 2742 genome.wustl.edu 37 X 14627285 14627285 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001118885.1 +1 reviewed p.T296 0.693 185 0% 43 23.3% 0 - - - - HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore FANCB 2187 genome.wustl.edu 37 X 14861762 14861762 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018113.1 -1 reviewed p.R836I 0.382 346 0% 223 21.1% 2 0% probably_damaging(0.962) tolerated(0.16) neutral(0.465) NULL FANCB 2187 genome.wustl.edu 37 X 14861991 14861991 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018113.1 -1 reviewed p.A760T 0.486 306 0% 147 19.7% 0 - benign(0.002) tolerated(0.09) neutral(0.296) NULL FANCB 2187 genome.wustl.edu 37 X 14883518 14883518 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018113.1 -1 reviewed p.K39Q 0.000 176 0% 229 10.9% 1 100% benign(0.418) tolerated(0.35) neutral(0.156) NULL MOSPD2 158747 genome.wustl.edu 37 X 14936834 14936834 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152581.3 +1 validated p.P450L 1.000 320 0% 36 19.4% 4 0% probably_damaging(0.989) tolerated(0.11) deleterious(0.711) NULL PIR 8544 genome.wustl.edu 37 X 15444029 15444029 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001018109.1 -1 reviewed p.G189W 1.000 489 0% 204 27% 13 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Pirin_C,superfamily_RmlC_like_cupin BMX 660 genome.wustl.edu 37 X 15540509 15540509 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001721.6 +1 reviewed p.A184V 0.042 327 0% 114 16.7% 0 - benign(0) tolerated(0.26) neutral(0.034) NULL ACE2 59272 genome.wustl.edu 37 X 15605982 15605982 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021804.2 -1 reviewed e6-1 1.000 310 0% 96 13.5% 0 - - - - - ACE2 59272 genome.wustl.edu 37 X 15607506 15607506 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021804.2 -1 reviewed p.R219 0.001 482 0% 282 29.8% 0 - - - - "HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain" ACE2 59272 genome.wustl.edu 37 X 15607552 15607552 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021804.2 -1 reviewed p.R204I 1.000 454 0% 272 15.4% 0 - probably_damaging(1) tolerated(0.05) deleterious(0.845) "HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain" CA5B 11238 genome.wustl.edu 37 X 15782843 15782843 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000478341 +1 known p.S42Y 1.000 353 0% 146 8.9% 3 0% - - - HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase ZRSR2 8233 genome.wustl.edu 37 X 15836765 15836765 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005089.3 +1 reviewed p.S276L 1.000 880 0% 990 22.3% 23 26% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) HMMSmart_RRM,superfamily_SSF54928 GRPR 2925 genome.wustl.edu 37 X 16142219 16142219 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005314.2 +1 reviewed p.G48E 0.998 367 0% 73 19.2% 0 - probably_damaging(0.985) tolerated(0.11) deleterious(0.704) superfamily_Family A G protein-coupled receptor-like RBBP7 5931 genome.wustl.edu 37 X 16871954 16871954 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002893.3 -1 reviewed p.L203 0.995 366 0% 167 10.8% 353 32.2% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 NHS 4810 genome.wustl.edu 37 X 17750368 17750368 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198270.2 +1 reviewed p.S1559 0.986 185 0% 217 23.5% 11 45.4% - - - NULL RAI2 10742 genome.wustl.edu 37 X 17819983 17819983 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021785.4 -1 reviewed p.L50M 0.976 131 0% 98 34.7% 26 3.8% unknown(0) tolerated(0.11) - NULL SCML2 10389 genome.wustl.edu 37 X 18264905 18264905 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006089.2 -1 validated p.E538D 0.000 113 0% 61 16.4% 0 - possibly_damaging(0.741) tolerated(0.17) neutral(0.331) NULL SCML2 10389 genome.wustl.edu 37 X 18278380 18278380 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006089.2 -1 validated p.S327Y 0.881 233 0% 136 11% 0 - possibly_damaging(0.78) deleterious(0.01) deleterious(0.697) NULL CDKL5 6792 genome.wustl.edu 37 X 18593569 18593569 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037343.1 +1 reviewed p.R81W 0.994 477 0.2% 116 18.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CDKL5 6792 genome.wustl.edu 37 X 18606144 18606144 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037343.1 +1 reviewed p.P209S 1.000 421 0% 100 27% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CDKL5 6792 genome.wustl.edu 37 X 18613526 18613526 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037343.1 +1 reviewed p.S268N 1.000 620 0% 178 18.5% 0 - benign(0.055) tolerated(0.12) neutral(0.264) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CDKL5 6792 genome.wustl.edu 37 X 18622913 18622913 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037343.1 +1 reviewed p.K623N 1.000 223 0% 103 26.2% 0 - possibly_damaging(0.923) tolerated(0.13) deleterious(0.625) NULL CDKL5 6792 genome.wustl.edu 37 X 18627680 18627680 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037343.1 +1 reviewed p.S714 1.000 220 0% 124 23.4% 0 - - - - NULL RS1 6247 genome.wustl.edu 37 X 18665380 18665380 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000330.3 -1 reviewed p.P86L 0.332 263 0.4% 268 22% 0 - benign(0.025) tolerated(0.67) neutral(0.004) HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like PPEF1 5475 genome.wustl.edu 37 X 18775775 18775775 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006240.2 +1 reviewed p.L143I 0.960 472 0% 181 16.6% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_SM00156,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases PPEF1 5475 genome.wustl.edu 37 X 18836165 18836165 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006240.2 +1 reviewed p.T468N 0.000 183 3.3% 62 11.3% 0 - - - - superfamily_Metallo-dependent phosphatases ENSG00000250774 0 genome.wustl.edu 37 X 18918859 18918859 + RNA SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502927 +1 known NULL 0.000 349 0% 215 19.1% 0 - - - - - PDHA1 5160 genome.wustl.edu 37 X 19372610 19372610 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000284.3 +1 reviewed p.V171A 1.000 567 0% 268 17.2% 18 0% benign(0.027) deleterious(0) neutral(0.446) HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding) MAP3K15 389840 genome.wustl.edu 37 X 19428090 19428090 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001671.3 -1 validated p.E9D 1.000 487 0% 178 18.5% 0 - possibly_damaging(0.95) deleterious(0.05) deleterious(0.739) NULL MAP3K15 389840 genome.wustl.edu 37 X 19444456 19444456 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000338883 -1 known p.R391H 1.000 267 0% 99 28.3% 0 - possibly_damaging(0.665) deleterious(0) deleterious(0.680) NULL MAP3K15 389840 genome.wustl.edu 37 X 19475045 19475045 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000338883 -1 known p.A327 0.074 499 0% 195 21% 0 - - - - NULL MAP7D2 256714 genome.wustl.edu 37 X 20028938 20028938 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152780.3 -1 validated p.L728F 1.000 327 0% 152 19.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RPS6KA3 6197 genome.wustl.edu 37 X 20185715 20185715 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004586.2 -1 reviewed p.A532T 0.116 442 0% 140 30.7% 12 0% benign(0) tolerated(0.17) neutral(0.059) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase RPS6KA3 6197 genome.wustl.edu 37 X 20213226 20213226 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004586.2 -1 reviewed p.I121 1.000 456 0% 123 16.3% 6 0% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CNKSR2 22866 genome.wustl.edu 37 X 21609257 21609257 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014927.3 +1 reviewed p.K592T 1.000 320 0% 82 19.5% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like MBTPS2 51360 genome.wustl.edu 37 X 21900747 21900747 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015884.3 +1 reviewed p.G512* 1.000 429 0% 288 20.1% 2 0% - - - HMMPfam_Peptidase_M50 PHEX 5251 genome.wustl.edu 37 X 22115085 22115085 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000444.4 +1 reviewed p.H288Y 0.994 410 0% 128 23.4% 0 - benign(0) tolerated(0.15) neutral(0.241) HMMPfam_Peptidase_M13_N,superfamily_SSF55486 PHEX 5251 genome.wustl.edu 37 X 22129664 22129664 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000444.4 +1 reviewed p.L387M 1.000 426 0% 196 17.3% 0 - probably_damaging(0.989) tolerated(0.08) deleterious(0.740) HMMPfam_Peptidase_M13_N,superfamily_SSF55486 ZNF645 158506 genome.wustl.edu 37 X 22291568 22291568 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152577.2 +1 provisional p.R154C 0.000 143 0% 59 23.7% 0 - probably_damaging(0.965) deleterious(0.02) deleterious(0.790) NULL PTCHD1 139411 genome.wustl.edu 37 X 23398344 23398344 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173495.2 +1 validated p.L330M 1.000 162 0% 156 23.7% 0 - probably_damaging(0.972) deleterious(0.04) deleterious(0.763) HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain SAT1 6303 genome.wustl.edu 37 X 23802062 23802062 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000379251 +1 known p.G118 0.002 137 0% 133 21.1% 16 0% - - - NULL FAM48B2 170067 genome.wustl.edu 37 X 24329482 24329482 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136233.1 -1 provisional p.L651I 0.000 123 0% 139 27.3% 0 - - - - NULL FAM48B1 100130302 genome.wustl.edu 37 X 24381586 24381586 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136234.1 +1 inferred p.R237W 0.071 291 0% 303 26.1% 0 - - - - NULL PDK3 5165 genome.wustl.edu 37 X 24544314 24544314 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142386.2 +1 reviewed e7-1 1.000 544 0% 228 20.2% 0 - - - - - POLA1 5422 genome.wustl.edu 37 X 24906160 24906160 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016937.3 +1 reviewed p.R1356Q 1.000 352 0% 95 25.3% 15 0% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_zf-DNA_Pol,superfamily_SSF90234 MAGEB6 158809 genome.wustl.edu 37 X 26212154 26212154 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173523.2 +1 reviewed p.S64F 0.001 288 0% 184 27.2% 0 - possibly_damaging(0.922) deleterious(0.05) deleterious(0.717) NULL MAGEB6 158809 genome.wustl.edu 37 X 26212352 26212352 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173523.2 +1 reviewed p.G130D 0.000 206 0% 153 17.6% 0 - probably_damaging(0.995) tolerated(0.55) neutral(0.465) NULL MAGEB6 158809 genome.wustl.edu 37 X 26212935 26212935 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173523.2 +1 reviewed p.I324 0.003 676 0% 397 23.4% 0 - - - - HMMPfam_MAGE DCAF8L2 347442 genome.wustl.edu 37 X 27765613 27765613 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136533.1 +1 provisional p.R201C 0.003 52 0% 48 33.3% 0 - - - - superfamily_WD40 repeat-like DCAF8L2 347442 genome.wustl.edu 37 X 27766230 27766230 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136533.1 +1 provisional p.G406 0.008 482 0% 282 12.1% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like DCAF8L2 347442 genome.wustl.edu 37 X 27766783 27766783 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136533.1 +1 provisional p.G591S 0.000 149 0% 79 17.7% 0 - - - - NULL DCAF8L1 139425 genome.wustl.edu 37 X 27997858 27997858 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001017930.1 -1 reviewed p.R532* 0.007 258 0.4% 81 27.2% 0 - - - - NULL IL1RAPL1 11141 genome.wustl.edu 37 X 29301121 29301121 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014271.3 +1 reviewed p.R50Q 1.000 566 0% 201 21.9% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin IL1RAPL1 11141 genome.wustl.edu 37 X 29959861 29959861 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014271.3 +1 reviewed p.E384G 1.000 681 0% 248 14.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL IL1RAPL1 11141 genome.wustl.edu 37 X 29959905 29959905 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014271.3 +1 reviewed p.D399N 0.998 525 0% 196 20.4% 0 - benign(0.04) tolerated(0.38) neutral(0.020) NULL IL1RAPL1 11141 genome.wustl.edu 37 X 29973499 29973499 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014271.3 +1 reviewed p.F551L 1.000 246 0% 84 16.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain MAGEB3 4114 genome.wustl.edu 37 X 30254401 30254401 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002365.4 +1 reviewed p.Q120 0.000 295 0% 215 18.1% 0 - - - - HMMPfam_MAGE MAGEB1 4112 genome.wustl.edu 37 X 30268791 30268791 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002363.4 +1 reviewed p.P61S 0.000 83 0% 54 11.1% 0 - benign(0.022) tolerated(0.33) neutral(0.025) NULL NR0B1 190 genome.wustl.edu 37 X 30326485 30326485 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000475.4 -1 reviewed p.E332D 0.030 36 0% 30 26.7% 0 - benign(0.002) deleterious(0.05) neutral(0.345) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain CXorf21 80231 genome.wustl.edu 37 X 30577668 30577668 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025159.2 -1 validated p.D269Y 0.999 239 0.8% 94 26.6% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GK 2710 genome.wustl.edu 37 X 30686157 30686157 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128127.1 +1 reviewed p.L61I 1.000 410 0.2% 291 20.6% 0 - possibly_damaging(0.514) tolerated(0.19) neutral(0.222) HMMPfam_FGGY_N,superfamily_SSF53067 GK 2710 genome.wustl.edu 37 X 30686164 30686164 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128127.1 +1 reviewed p.S63Y 1.000 414 0% 295 21.4% 0 - probably_damaging(0.984) deleterious(0.01) deleterious(0.836) HMMPfam_FGGY_N,superfamily_SSF53067 TAB3 257397 genome.wustl.edu 37 X 30872926 30872926 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152787.3 -1 reviewed p.Q286* 1.000 515 0% 251 21.1% 0 - - - - NULL TAB3 257397 genome.wustl.edu 37 X 30873225 30873225 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152787.3 -1 reviewed p.H186R 1.000 566 0.2% 235 13.6% 2 0% possibly_damaging(0.922) tolerated(0.6) neutral(0.376) NULL FTHL17 53940 genome.wustl.edu 37 X 31089581 31089581 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031894.2 -1 reviewed p.A164S 0.000 125 0% 133 21.8% 0 - benign(0.006) tolerated(0.87) neutral(0.001) superfamily_Ferritin/RR_like DMD 1756 genome.wustl.edu 37 X 31164408 31164408 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004006.2 -1 reviewed p.G3641C 1.000 181 0% 52 17.3% 2 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL DMD 1756 genome.wustl.edu 37 X 31164500 31164500 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004006.2 -1 reviewed p.T3610M 0.997 141 0% 51 23.5% 0 - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL DMD 1756 genome.wustl.edu 37 X 31697498 31697498 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000465285 -1 known p.N351D 0.999 456 0% 183 21.9% 0 - - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat DMD 1756 genome.wustl.edu 37 X 31747751 31747751 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004006.2 -1 reviewed p.R2553* 0.996 646 0% 540 20.2% 0 - - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat FAM47A 158724 genome.wustl.edu 37 X 34148491 34148491 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203408.3 -1 validated p.Y635 0.001 487 0% 455 21.8% 0 - - - - NULL FAM47A 158724 genome.wustl.edu 37 X 34148784 34148784 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203408.3 -1 validated p.R538C 0.002 124 0% 127 10.2% 0 - possibly_damaging(0.936) deleterious(0.04) deleterious(0.730) NULL FAM47A 158724 genome.wustl.edu 37 X 34148786 34148786 + Missense_Mutation SNP G G T rs45574734 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203408.3 -1 validated p.T537N 0.002 123 0% 123 18.7% 0 - possibly_damaging(0.45) tolerated(0.08) neutral(0.448) NULL FAM47A 158724 genome.wustl.edu 37 X 34149916 34149916 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203408.3 -1 validated p.E160D 0.785 267 0% 215 21.4% 0 - probably_damaging(0.988) deleterious(0.03) deleterious(0.802) NULL FAM47B 170062 genome.wustl.edu 37 X 34961772 34961772 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152631.2 +1 validated p.P275H 0.975 134 0% 155 18.1% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL FAM47B 170062 genome.wustl.edu 37 X 34962204 34962204 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152631.2 +1 validated p.R419Q 0.001 169 0% 149 24.2% 0 - possibly_damaging(0.94) tolerated(0.36) neutral(0.405) NULL MAGEB16 139604 genome.wustl.edu 37 X 35820594 35820594 + Missense_Mutation SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099921.1 +1 provisional p.D94V 0.000 222 0% 109 11% 0 - possibly_damaging(0.95) tolerated(0.08) deleterious(0.694) NULL MAGEB16 139604 genome.wustl.edu 37 X 35820753 35820753 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099921.1 +1 provisional p.D147G 0.001 209 0% 91 18.7% 0 - benign(0.297) tolerated(0.19) neutral(0.142) HMMPfam_MAGE MAGEB16 139604 genome.wustl.edu 37 X 35820972 35820972 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099921.1 +1 provisional p.A220V 0.887 376 0% 182 20.3% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_MAGE CXorf30 645090 genome.wustl.edu 37 X 36371670 36371670 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098843.3 +1 validated p.R355W 0.000 350 0.3% 123 16.3% 2 0% benign(0.253) deleterious(0) deleterious(0.471) NULL CXorf30 645090 genome.wustl.edu 37 X 36397503 36397503 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001098843.3 +1 validated p.S521N 1.000 304 0% 140 10.7% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM47C 442444 genome.wustl.edu 37 X 37027160 37027160 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013736.2 +1 validated p.P226H 0.030 94 0% 126 20.6% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL RPGR 6103 genome.wustl.edu 37 X 38128998 38128998 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000328.2 -1 reviewed p.D777Y 0.877 482 0% 388 19.3% 4 0% probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL OTC 5009 genome.wustl.edu 37 X 38268216 38268216 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000531.5 +1 reviewed p.G269* 1.000 283 0% 83 21.7% 0 - - - - superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace BCOR 54880 genome.wustl.edu 37 X 39921468 39921468 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123385.1 -1 reviewed p.P1451L 0.998 226 0% 178 20.8% 16 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Ankyrin repeat BCOR 54880 genome.wustl.edu 37 X 39930372 39930372 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123385.1 -1 reviewed p.R1031I 1.000 416 0% 434 26.5% 7 0% probably_damaging(0.986) deleterious(0) deleterious(0.879) NULL BCOR 54880 genome.wustl.edu 37 X 39933945 39933945 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001123385.1 -1 reviewed p.Y218 1.000 149 0% 147 25.9% 7 14.2% - - - NULL CXorf38 159013 genome.wustl.edu 37 X 40496359 40496359 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144970.2 -1 validated p.S174F 0.998 227 0% 222 13.5% 27 33.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL USP9X 8239 genome.wustl.edu 37 X 41012294 41012294 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039590.2 +1 reviewed p.N619 0.999 652 0% 210 21% 7 0% - - - NULL USP9X 8239 genome.wustl.edu 37 X 41077839 41077839 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039590.2 +1 reviewed p.P2142S 1.000 636 0% 483 22.2% 62 64.5% benign(0) tolerated(0.38) neutral(0.018) NULL USP9X 8239 genome.wustl.edu 37 X 41084093 41084093 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039590.2 +1 reviewed p.S2284R 1.000 417 0% 299 22.1% 85 16.4% benign(0.016) tolerated(0.62) neutral(0.005) NULL DDX3X 1654 genome.wustl.edu 37 X 41203316 41203316 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001356.3 +1 reviewed p.P267S 1.000 225 0% 191 19.9% 64 40.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases DDX3X 1654 genome.wustl.edu 37 X 41204683 41204683 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001356.3 +1 reviewed p.E399D 0.999 227 0% 281 26.7% 65 33.8% benign(0) tolerated(1) - HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases CASK 8573 genome.wustl.edu 37 X 41379834 41379834 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003688.3 -1 reviewed p.R869C 1.000 282 0% 216 19.4% 31 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Guanylate_kin,HMMSmart_GuKc,superfamily_SSF52540 CASK 8573 genome.wustl.edu 37 X 41437689 41437689 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003688.3 -1 reviewed p.N469 0.985 407 0% 155 17.4% 17 0% - - - NULL CASK 8573 genome.wustl.edu 37 X 41485942 41485942 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003688.3 -1 reviewed p.A310 0.658 300 0% 252 15.5% 6 83.3% - - - NULL GPR34 2857 genome.wustl.edu 37 X 41555100 41555100 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001097579.1 +1 validated p.N72D 1.000 294 0% 147 29.9% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MAOB 4129 genome.wustl.edu 37 X 43652824 43652824 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000898.4 -1 reviewed p.A257V 1.000 255 0% 98 17.3% 51 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain MAOB 4129 genome.wustl.edu 37 X 43741525 43741525 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000898.4 -1 reviewed p.V7 1.000 28 0% 46 21.7% 12 0% - - - superfamily_FAD/NAD(P)-binding domain EFHC2 80258 genome.wustl.edu 37 X 44037636 44037636 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_025184.3 -1 validated p.P642H 0.001 263 0% 96 13.5% 4 0% - - - NULL EFHC2 80258 genome.wustl.edu 37 X 44202888 44202889 + Frame_Shift_Ins INS - - A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000420999 -1 known p.A10fs 0.002:0.000 - - - - - - - - - NULL KDM6A 7403 genome.wustl.edu 37 X 44937723 44937723 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021140.2 +1 reviewed p.R971C 1.000 397 0% 198 16.2% 6 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MIR221 407006 genome.wustl.edu 37 X 45605617 45605617 + RNA SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000385135 -1 known NULL 1.000 149 0% 94 31.9% 0 - - - - - ZNF674 641339 genome.wustl.edu 37 X 46388270 46388270 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039891.2 -1 validated p.K30N 0.976 308 0% 124 18.5% 5 0% probably_damaging(0.958) deleterious(0.01) deleterious(0.807) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box UBA1 7317 genome.wustl.edu 37 X 47060332 47060332 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003334.3 +1 reviewed p.R174* 0.984 169 0% 164 20.7% 112 0% - - - HMMPfam_ThiF,superfamily_MoeB UBA1 7317 genome.wustl.edu 37 X 47074323 47074323 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003334.3 +1 reviewed p.R1058S 1.000 76 0% 79 24.1% 999 0.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL USP11 8237 genome.wustl.edu 37 X 47098766 47098766 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004651.3 +1 reviewed p.R144 0.537 141 0% 120 25% 25 0% - - - HMMSmart_DUSP,HMMPfam_DUF1055 USP11 8237 genome.wustl.edu 37 X 47099747 47099747 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004651.3 +1 reviewed p.P236 0.000 221 0% 213 25.4% 23 78.2% - - - HMMPfam_DUF1055 ARAF 369 genome.wustl.edu 37 X 47426821 47426821 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001654.3 +1 reviewed p.Q356* 1.000 238 0% 230 26.5% 14 14.2% - - - superfamily_Kinase_like,HMMPfam_Pkinase ARAF 369 genome.wustl.edu 37 X 47430282 47430282 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001654.3 +1 reviewed p.I519 1.000 146 0% 235 23.4% 23 0% - - - superfamily_Kinase_like,HMMPfam_Pkinase ARAF 369 genome.wustl.edu 37 X 47430355 47430355 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001654.3 +1 reviewed p.R544C 0.999 91 0% 146 11% 40 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Kinase_like,HMMPfam_Pkinase CFP 5199 genome.wustl.edu 37 X 47485529 47485529 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145252.1 -1 reviewed p.C391Y 0.945 92 0% 99 14.1% 14 7.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_TSP1,superfamily_TSP1 SPACA5 389852 genome.wustl.edu 37 X 47867812 47867812 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_205856.2 +1 validated p.A62T 0.006 677 0% 509 11.8% 0 - benign(0) tolerated(0.62) neutral(0.004) HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955 ZNF630 57232 genome.wustl.edu 37 X 47919232 47919232 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001037735.2 -1 validated p.R200I 0.505 144 0.7% 59 10.2% 0 - probably_damaging(1) tolerated(0.1) deleterious(0.786) NULL SSX5 6758 genome.wustl.edu 37 X 48054566 48054566 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021015.3 -1 reviewed e2-1 0.000 297 0% 229 20.5% 0 - - - - - SSX9 280660 genome.wustl.edu 37 X 48159131 48159131 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000376909 -1 known p.N134 0.000 984 0.1% 338 13.6% 0 - - - - NULL FTSJ1 24140 genome.wustl.edu 37 X 48341096 48341096 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012280.2 +1 reviewed p.R291C 0.002 76 0% 78 17.9% 97 0% benign(0.008) tolerated(0.08) neutral(0.300) NULL WDR13 64743 genome.wustl.edu 37 X 48457832 48457832 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017883.4 +1 reviewed p.R125H 1.000 73 0% 59 22% 80 81.2% probably_damaging(0.997) tolerated(0.26) deleterious(0.500) NULL WDR13 64743 genome.wustl.edu 37 X 48458064 48458064 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017883.4 +1 reviewed p.A161V 0.997 100 0% 96 18.8% 112 0.8% benign(0.008) tolerated(0.83) neutral(0.001) HMMSmart_SM00320 SUV39H1 6839 genome.wustl.edu 37 X 48557294 48557294 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003173.2 +1 reviewed p.G7 0.994 136 0% 262 25.6% 5 100% - - - NULL SUV39H1 6839 genome.wustl.edu 37 X 48557432 48557432 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003173.2 +1 reviewed p.K53N 0.993 189 0% 333 23.7% 6 0% benign(0.389) tolerated(0.45) neutral(0.137) HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like SUV39H1 6839 genome.wustl.edu 37 X 48558487 48558487 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000337852 +1 known p.G37* 0.997 12 0% 33 30.3% 7 100% - - - NULL SUV39H1 6839 genome.wustl.edu 37 X 48558589 48558589 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000453214 +1 known p.G29R 1.000 41 0% 61 29.5% 6 100% unknown(0) - - NULL HDAC6 10013 genome.wustl.edu 37 X 48673823 48673823 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006044.2 +1 reviewed p.G394 0.001 169 0% 181 26% 15 0% - - - HMMPfam_Hist_deacetyl,superfamily_SSF52768 HDAC6 10013 genome.wustl.edu 37 X 48673835 48673835 + Silent SNP G G A rs57333741 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006044.2 +1 reviewed p.S398 0.101 184 0% 179 25.1% 12 58.3% - - - HMMPfam_Hist_deacetyl,superfamily_SSF52768 HDAC6 10013 genome.wustl.edu 37 X 48681638 48681638 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006044.2 +1 reviewed p.V943 0.000 61 0% 67 28.4% 11 0% - - - NULL ERAS 3266 genome.wustl.edu 37 X 48687842 48687842 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181532.2 +1 provisional p.R103 0.001 49 0% 51 15.7% 0 - - - - HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540 PQBP1 10084 genome.wustl.edu 37 X 48759863 48759863 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000376548 +1 known p.P216T 0.000 71 0% 97 32% 8 0% - - - NULL SLC35A2 7355 genome.wustl.edu 37 X 48762204 48762204 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005660.1 -1 provisional p.A328T 1.000 110 0% 84 29.8% 25 0% benign(0.097) tolerated(0.35) neutral(0.028) HMMPfam_Nuc_sug_transp,superfamily_Multidrug resistance efflux transporter EmrE SLC35A2 7355 genome.wustl.edu 37 X 48768816 48768816 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000376519 -1 known p.T33I 0.112 9 0.000 11 0.364 0 - - - - NULL OTUD5 55593 genome.wustl.edu 37 X 48814375 48814375 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017602.3 -1 reviewed p.R153H 0.997 10 0% 15 26.7% 12 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL KCND1 3750 genome.wustl.edu 37 X 48823447 48823447 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004979.4 -1 reviewed p.G396 0.518 258 0% 238 22.7% 6 100% - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels GPKOW 27238 genome.wustl.edu 37 X 48972134 48972134 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015698.4 -1 validated p.V386I 1.000 402 0% 215 20.5% 94 0% probably_damaging(0.961) deleterious(0) deleterious(0.849) NULL GPKOW 27238 genome.wustl.edu 37 X 48978819 48978819 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015698.4 -1 validated p.A129T 0.559 121 0% 101 19.8% 37 0% benign(0.007) tolerated(1) - NULL PLP2 5355 genome.wustl.edu 37 X 49028440 49028440 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002668.2 +1 reviewed p.E31D 1.000 61 0% 86 26.7% 236 0% possibly_damaging(0.948) deleterious(0) deleterious(0.836) HMMPfam_MARVEL SYP 6855 genome.wustl.edu 37 X 49049907 49049907 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003179.2 -1 reviewed p.T146M 1.000 161 0% 190 26.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MARVEL CACNA1F 778 genome.wustl.edu 37 X 49068760 49068760 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005183.2 -1 reviewed p.P1328 1.000 146 0% 71 25.4% 3 100% - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1F 778 genome.wustl.edu 37 X 49072885 49072885 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005183.2 -1 reviewed p.M1076V 1.000 186 0% 156 14.1% 1 100% probably_damaging(0.98) deleterious(0) deleterious(0.869) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1F 778 genome.wustl.edu 37 X 49079033 49079033 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005183.2 -1 reviewed p.A757T 1.000 313 0% 261 20.3% 1 0% benign(0.15) deleterious(0) neutral(0.458) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CACNA1F 778 genome.wustl.edu 37 X 49086730 49086730 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005183.2 -1 reviewed p.E257K 1.000 112 0% 126 23% 0 - possibly_damaging(0.484) deleterious(0) deleterious(0.605) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CCDC22 28952 genome.wustl.edu 37 X 49099433 49099433 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014008.3 +1 validated p.R148H 0.249 126 0% 122 15.6% 34 88.2% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_DUF812 GAGE4 2576 genome.wustl.edu 37 X 49105310 49105310 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001474.1 +1 reviewed p.C44Y 1.000 145 0% 140 18.6% 51 1.9% - - - NULL FOXP3 50943 genome.wustl.edu 37 X 49111949 49111949 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014009.3 -1 reviewed p.L253M 1.000 60 0% 73 17.8% 3 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL FOXP3 50943 genome.wustl.edu 37 X 49114020 49114020 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014009.3 -1 reviewed p.L106 1.000 213 0% 127 18.9% 3 0% - - - NULL PPP1R3F 89801 genome.wustl.edu 37 X 49142862 49142862 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033215.4 +1 reviewed p.T570 0.000 38 0% 31 35.5% 0 - - - - NULL PAGE4 9506 genome.wustl.edu 37 X 49595048 49595048 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007003.2 +1 reviewed p.R6I 0.004 683 0% 520 25.2% 2 0% unknown(0) - - HMMPfam_GAGE PAGE4 9506 genome.wustl.edu 37 X 49595652 49595652 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007003.2 +1 reviewed p.P44L 0.000 423 0% 391 20.2% 11 0% probably_damaging(0.988) - - HMMPfam_GAGE USP27X 389856 genome.wustl.edu 37 X 49645374 49645374 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145073.1 +1 provisional p.R155H 0.954 318 0.3% 333 23.7% 2 50% - - - HMMPfam_UCH,superfamily_SSF54001 USP27X 389856 genome.wustl.edu 37 X 49645894 49645894 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145073.1 +1 provisional p.S328 1.000 310 0.3% 359 20.6% 5 0% - - - HMMPfam_UCH,superfamily_SSF54001 CLCN5 1184 genome.wustl.edu 37 X 49846418 49846418 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127898.1 +1 reviewed p.P283S 1.000 445 0% 178 22.5% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel CCNB3 85417 genome.wustl.edu 37 X 50052120 50052120 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033031.2 +1 reviewed p.K317N 0.000 156 0% 38 21.1% 0 - possibly_damaging(0.85) deleterious(0) deleterious(0.772) NULL CCNB3 85417 genome.wustl.edu 37 X 50053647 50053647 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033031.2 +1 reviewed p.H826Q 0.000 120 0% 25 28% 0 - possibly_damaging(0.767) tolerated(0.21) neutral(0.328) NULL CCNB3 85417 genome.wustl.edu 37 X 50053683 50053683 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033031.2 +1 reviewed p.S838 0.000 116 0% 36 27.8% 0 - - - - NULL SHROOM4 57477 genome.wustl.edu 37 X 50341445 50341445 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020717.3 -1 reviewed p.L1345I 1.000 127 0% 85 18.8% 0 - probably_damaging(0.971) deleterious(0.01) deleterious(0.819) HMMPfam_ASD2 SHROOM4 57477 genome.wustl.edu 37 X 50350950 50350950 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020717.3 -1 reviewed p.S1064R 1.000 137 0% 60 31.7% 0 - benign(0.268) deleterious(0) deleterious(0.473) NULL SHROOM4 57477 genome.wustl.edu 37 X 50376239 50376239 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020717.3 -1 reviewed p.A945V 0.000 238 0% 120 20.8% 0 - benign(0.006) deleterious(0.01) neutral(0.406) NULL SHROOM4 57477 genome.wustl.edu 37 X 50376736 50376736 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020717.3 -1 reviewed p.E779D 0.997 172 0% 98 20.4% 2 0% possibly_damaging(0.882) tolerated(0.07) deleterious(0.663) HMMPfam_ASD1 NUDT10 170685 genome.wustl.edu 37 X 51075876 51075876 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000356450 +1 known p.A20V 1.000 87 0% 107 22.4% 0 - possibly_damaging(0.906) deleterious(0) deleterious(0.804) HMMPfam_NUDIX,superfamily_Nudix NUDT11 55190 genome.wustl.edu 37 X 51238838 51238838 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000375992 -1 known p.N153K 0.978 285 0% 390 20.8% 0 - possibly_damaging(0.515) deleterious(0.02) deleterious(0.556) NULL GSPT2 23708 genome.wustl.edu 37 X 51487366 51487366 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018094.4 +1 reviewed p.G215D 1.000 156 0% 172 19.8% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GTP_EFTU,superfamily_SSF52540 GSPT2 23708 genome.wustl.edu 37 X 51487543 51487543 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018094.4 +1 reviewed p.A274V 1.000 533 0% 560 18.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GTP_EFTU,superfamily_SSF52540 GSPT2 23708 genome.wustl.edu 37 X 51487831 51487831 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018094.4 +1 reviewed p.L370R 1.000 349 0% 353 24.1% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_GTP_EFTU,superfamily_SSF52540 ENSG00000245461 0 genome.wustl.edu 37 X 51488656 51488656 + RNA SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000502175 -1 novel NULL 0.739 158 0% 172 26.7% 0 - - - - - MAGED1 9500 genome.wustl.edu 37 X 51639775 51639775 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005333.1 +1 reviewed p.V398M 0.679 97 0% 86 26.7% 100 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL MAGED1 9500 genome.wustl.edu 37 X 51640956 51640956 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001005333.1 +1 reviewed p.P600 0.875 298 0% 267 24.7% 220 0% - - - HMMPfam_MAGE SSX7 280658 genome.wustl.edu 37 X 52674555 52674555 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173358.2 -1 reviewed p.R169C 0.005 740 0.1% 247 15.8% 0 - benign(0.303) deleterious(0) deleterious(0.538) HMMPfam_SSXRD GPR173 54328 genome.wustl.edu 37 X 53106118 53106118 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018969.5 +1 reviewed p.L105 1.000 83 0% 76 26.3% 1 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TSPYL2 64061 genome.wustl.edu 37 X 53112016 53112016 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022117.3 +1 reviewed p.T112 0.002 47 0% 86 25.6% 2 0% - - - NULL TSPYL2 64061 genome.wustl.edu 37 X 53112404 53112404 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022117.3 +1 reviewed p.R242C 1.000 105 0% 119 18.5% 13 0% benign(0.07) deleterious(0) neutral(0.450) HMMPfam_NAP TSPYL2 64061 genome.wustl.edu 37 X 53115127 53115127 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022117.3 +1 reviewed p.P518H 0.192 1172 0.1% 750 24.9% 12 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL KDM5C 8242 genome.wustl.edu 37 X 53222681 53222681 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004187.3 -1 reviewed p.I1419V 1.000 153 0% 174 18.4% 55 7.2% probably_damaging(0.97) deleterious(0.03) deleterious(0.777) NULL KDM5C 8242 genome.wustl.edu 37 X 53223813 53223813 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004187.3 -1 reviewed p.S1182 0.005 358 0% 327 21.7% 50 10% - - - superfamily_FYVE/PHD zinc finger KDM5C 8242 genome.wustl.edu 37 X 53243994 53243994 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004187.3 -1 reviewed p.G333 0.988 312 0% 155 20.6% 20 65% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD IQSEC2 23096 genome.wustl.edu 37 X 53264030 53264030 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111125.1 -1 validated p.P1280S 1.000 28 0% 19 31.6% 3 33.3% unknown(0) deleterious(0) - NULL IQSEC2 23096 genome.wustl.edu 37 X 53279765 53279765 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001111125.1 -1 validated p.A665S 1.000 57 0% 43 25.6% 2 50% benign(0.042) tolerated(0.67) neutral(0.005) NULL SMC1A 8243 genome.wustl.edu 37 X 53407561 53407561 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006306.2 -1 reviewed p.L1200I 1.000 224 0% 105 27.6% 58 50% probably_damaging(0.986) tolerated(0.1) deleterious(0.721) HMMPfam_SMC_N,superfamily_SSF52540 HUWE1 10075 genome.wustl.edu 37 X 53573707 53573707 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000427052 -1 known p.V2606I 0.654 284 0% 164 22% 41 0% - - - NULL HUWE1 10075 genome.wustl.edu 37 X 53577915 53577915 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031407.4 -1 reviewed p.R3111H 1.000 113 0% 65 36.9% 24 0% probably_damaging(0.973) deleterious(0) deleterious(0.859) NULL HUWE1 10075 genome.wustl.edu 37 X 53591641 53591641 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031407.4 -1 reviewed p.V2308A 1.000 373 0% 175 13.1% 20 0% benign(0.002) tolerated(0.15) neutral(0.241) superfamily_ARM repeat HUWE1 10075 genome.wustl.edu 37 X 53630408 53630408 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_031407.4 -1 reviewed p.V933I 1.000 241 0% 94 17% 4 0% probably_damaging(0.995) tolerated(0.2) deleterious(0.507) NULL PHF8 23133 genome.wustl.edu 37 X 53966899 53966899 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015107.2 -1 reviewed p.L900 0.887 382 0% 141 21.3% 17 82.3% - - - NULL FAM120C 54954 genome.wustl.edu 37 X 54159256 54159256 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017848.4 -1 validated p.N644S 1.000 189 0% 171 27.5% 1 0% benign(0.307) tolerated(0.18) neutral(0.151) NULL FAM120C 54954 genome.wustl.edu 37 X 54185906 54185906 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017848.4 -1 validated p.S281R 1.000 296 0% 107 19.6% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL WNK3 65267 genome.wustl.edu 37 X 54263453 54263453 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020922.4 -1 reviewed p.P1516S 0.995 494 0% 193 13.5% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL WNK3 65267 genome.wustl.edu 37 X 54337567 54337567 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020922.4 -1 reviewed p.S232F 1.000 405 0% 193 19.7% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase WNK3 65267 genome.wustl.edu 37 X 54359626 54359626 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020922.4 -1 reviewed p.V161L 1.000 501 0% 212 21.2% 0 - possibly_damaging(0.889) deleterious(0) deleterious(0.794) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase FGD1 2245 genome.wustl.edu 37 X 54475305 54475305 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004463.2 -1 reviewed p.H790 0.982 59 0% 58 24.1% 38 92.1% - - - HMMPfam_FYVE,HMMSmart_FYVE FGD1 2245 genome.wustl.edu 37 X 54494300 54494300 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004463.2 -1 reviewed p.H419 0.475 129 0% 74 32.4% 20 0% - - - HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain FGD1 2245 genome.wustl.edu 37 X 54496615 54496615 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004463.2 -1 reviewed p.P312H 1.000 59 1.7% 51 11.8% 8 37.5% unknown(0) deleterious(0.02) - NULL FGD1 2245 genome.wustl.edu 37 X 54521576 54521576 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004463.2 -1 reviewed p.G97D 1.000 26 0% 28 17.9% 10 0% unknown(0) deleterious(0) - NULL GNL3L 54552 genome.wustl.edu 37 X 54578159 54578159 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019067.5 +1 reviewed p.R341H 1.000 106 0% 69 21.7% 4 0% possibly_damaging(0.926) deleterious(0) deleterious(0.819) HMMPfam_MMR_HSR1 GNL3L 54552 genome.wustl.edu 37 X 54584945 54584945 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019067.5 +1 reviewed p.R508H 0.000 206 0% 62 17.7% 9 0% benign(0) tolerated(0.49) neutral(0.011) NULL ITIH6 347365 genome.wustl.edu 37 X 54776442 54776442 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198510.2 -1 reviewed p.K1276N 0.998 79 0% 83 15.7% 0 - probably_damaging(0.975) tolerated(0.08) deleterious(0.717) NULL ITIH6 347365 genome.wustl.edu 37 X 54780096 54780096 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198510.2 -1 reviewed p.D1114N 0.986 492 0% 420 17.1% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL ITIH6 347365 genome.wustl.edu 37 X 54783527 54783527 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198510.2 -1 reviewed p.P994S 0.649 315 0% 227 16.3% 0 - probably_damaging(0.991) - - NULL ITIH6 347365 genome.wustl.edu 37 X 54783942 54783942 + Silent SNP A A T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198510.2 -1 reviewed p.S855 0.000 279 0% 239 24.7% 0 - - - - NULL TRO 7216 genome.wustl.edu 37 X 54955317 54955317 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039705.1 +1 reviewed p.N720 0.000 201 0% 110 18.2% 0 - - - - NULL TRO 7216 genome.wustl.edu 37 X 54956158 54956158 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039705.1 +1 reviewed p.G1001S 0.000 115 0% 76 23.7% 3 33.3% probably_damaging(1) tolerated(0.22) deleterious(0.542) NULL TRO 7216 genome.wustl.edu 37 X 54956841 54956841 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039705.1 +1 reviewed p.G1228 0.000 204 0.5% 139 22.3% 5 0% - - - NULL APEX2 27301 genome.wustl.edu 37 X 55028813 55028813 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014481.2 +1 reviewed p.L124R 1.000 263 0% 252 26.6% 28 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos ALAS2 212 genome.wustl.edu 37 X 55040039 55040039 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000032.4 -1 reviewed p.L494F 1.000 127 0% 79 17.7% 2 100% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases ALAS2 212 genome.wustl.edu 37 X 55041310 55041310 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000032.4 -1 reviewed p.R436Q 0.994 120 0.8% 74 13.5% 0 - possibly_damaging(0.478) tolerated(0.16) neutral(0.217) HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases ALAS2 212 genome.wustl.edu 37 X 55052395 55052395 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000032.4 -1 reviewed p.V13 0.424 181 0% 65 21.5% 0 - - - - HMMPfam_Preseq_ALAS MAGEH1 28986 genome.wustl.edu 37 X 55478866 55478866 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014061.3 +1 reviewed p.R20H 1.000 24 0% 42 28.6% 3 0% unknown(0) deleterious(0) - NULL MAGEH1 28986 genome.wustl.edu 37 X 55479281 55479281 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014061.3 +1 reviewed p.E158D 0.180 227 0% 172 27.3% 10 0% possibly_damaging(0.77) tolerated(0.15) deleterious(0.527) HMMPfam_MAGE USP51 158880 genome.wustl.edu 37 X 55513273 55513273 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201286.3 -1 validated p.L700 1.000 182 0.5% 194 19.6% 2 0% - - - HMMPfam_UCH,superfamily_SSF54001 USP51 158880 genome.wustl.edu 37 X 55514860 55514860 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_201286.3 -1 validated p.D171 0.000 50 0% 91 19.8% 0 - - - - NULL UBQLN2 29978 genome.wustl.edu 37 X 56591329 56591329 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013444.3 +1 reviewed p.G341 0.165 103 0% 101 20.8% 14 0% - - - NULL SPIN3 169981 genome.wustl.edu 37 X 57021324 57021324 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001010862.2 -1 validated p.G19 0.000 146 0% 159 28.9% 1 0% - - - NULL FAAH2 158584 genome.wustl.edu 37 X 57405176 57405176 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_174912.3 +1 reviewed p.L279M 0.892 406 0% 246 19.5% 18 0% probably_damaging(0.968) deleterious(0.05) deleterious(0.755) HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes ZXDB 158586 genome.wustl.edu 37 X 57620065 57620065 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007157.3 +1 validated p.R528 0.997 205 0% 317 19.2% 0 - - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZXDB 158586 genome.wustl.edu 37 X 57620131 57620131 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007157.3 +1 validated p.P550 0.320 525 0.2% 790 18.1% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZXDB 158586 genome.wustl.edu 37 X 57620268 57620268 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007157.3 +1 validated p.S596I 0.999 508 0% 697 22% 2 100% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) NULL ZXDA 7789 genome.wustl.edu 37 X 57935706 57935706 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007156.4 -1 reviewed p.F383 0.996 329 0% 472 12.9% 5 0% - - - superfamily_SSF57667 ZXDA 7789 genome.wustl.edu 37 X 57935805 57935805 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007156.4 -1 reviewed p.H350 1.000 148 0% 220 12.7% 3 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 SPIN4 139886 genome.wustl.edu 37 X 62570169 62570169 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012968.2 -1 validated p.R177H 1.000 240 0% 249 12% 3 0% benign(0.362) tolerated(0.4) neutral(0.131) NULL SPIN4 139886 genome.wustl.edu 37 X 62570623 62570623 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012968.2 -1 validated p.R26G 1.000 150 0% 201 22.9% 6 0% benign(0.017) deleterious(0) neutral(0.445) NULL FAM123B 139285 genome.wustl.edu 37 X 63412030 63412030 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152424.3 -1 reviewed p.D379 0.066 574 0.2% 330 25.8% 0 - - - - HMMPfam_WTX FAM123B 139285 genome.wustl.edu 37 X 63412464 63412464 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152424.3 -1 reviewed p.P235T 0.000 219 0% 142 23.9% 1 0% probably_damaging(0.995) deleterious(0.04) deleterious(0.806) HMMPfam_WTX FAM123B 139285 genome.wustl.edu 37 X 63412793 63412793 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152424.3 -1 reviewed p.C125Y 0.003 195 0% 97 16.5% 1 100% benign(0.284) tolerated(0.1) neutral(0.373) HMMPfam_WTX MTMR8 55613 genome.wustl.edu 37 X 63576215 63576215 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017677.3 -1 reviewed p.A51T 0.977 174 0% 33 24.2% 1 0% unknown(0) tolerated(0.43) - superfamily_PH domain-like MSN 4478 genome.wustl.edu 37 X 64950981 64950981 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002444.2 +1 reviewed p.Q160H 1.000 320 0% 90 23.3% 115 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 MSN 4478 genome.wustl.edu 37 X 64951768 64951768 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002444.2 +1 reviewed p.S207N 0.999 446 0.4% 166 16.9% 120 0% benign(0) tolerated(0.22) neutral(0.042) superfamily_SSF50729 HEPH 9843 genome.wustl.edu 37 X 65390509 65390509 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138737.3 +1 reviewed p.R36W 0.795 182 0% 68 16.2% 2 0% possibly_damaging(0.862) deleterious(0.02) deleterious(0.716) superfamily_Cupredoxins HEPH 9843 genome.wustl.edu 37 X 65413465 65413465 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138737.3 +1 reviewed p.H455Y 0.999 88 0% 61 18% 1 0% probably_damaging(1) tolerated(0.09) deleterious(0.796) superfamily_Cupredoxins OPHN1 4983 genome.wustl.edu 37 X 67421496 67421496 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002547.2 -1 reviewed p.D330 1.000 341 0% 120 19.2% 0 - - - - HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 OPHN1 4983 genome.wustl.edu 37 X 67421498 67421498 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002547.2 -1 reviewed p.D330N 0.992 335 0% 119 26.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 YIPF6 286451 genome.wustl.edu 37 X 67731771 67731771 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173834.2 +1 provisional p.I46 0.014 549 0% 372 20.2% 9 0% - - - NULL STARD8 9754 genome.wustl.edu 37 X 67940187 67940187 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142503.2 +1 reviewed p.H657 0.756 34 0% 29 31% 3 0% - - - NULL FAM155B 27112 genome.wustl.edu 37 X 68725610 68725610 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015686.2 +1 validated p.P162L 0.194 38 0% 75 28% 2 0% probably_damaging(0.996) tolerated(0.37) deleterious(0.481) NULL AWAT2 158835 genome.wustl.edu 37 X 69264268 69264268 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002254.1 -1 reviewed p.P44S 0.000 236 0% 85 27.1% 0 - benign(0) tolerated(0.79) neutral(0.001) HMMPfam_DAGAT IGBP1 3476 genome.wustl.edu 37 X 69370137 69370137 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001551.2 +1 reviewed p.A279V 0.148 397 0% 210 23.3% 179 0% benign(0) tolerated(0.62) neutral(0.004) HMMPfam_TAP42 DGAT2L6 347516 genome.wustl.edu 37 X 69397511 69397511 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198512.1 +1 provisional p.F27L 0.000 334 0% 185 13% 0 - benign(0) tolerated(0.71) neutral(0.002) NULL DGAT2L6 347516 genome.wustl.edu 37 X 69424365 69424365 + Silent SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198512.1 +1 provisional p.V286 1.000 293 0% 103 23.3% 0 - - - - HMMPfam_DAGAT AWAT1 158833 genome.wustl.edu 37 X 69457032 69457032 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013579.2 +1 reviewed p.P132T 1.000 132 0% 107 9.3% 0 - possibly_damaging(0.87) tolerated(0.06) deleterious(0.661) HMMPfam_DAGAT AWAT1 158833 genome.wustl.edu 37 X 69459689 69459689 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013579.2 +1 reviewed p.R246H 0.000 448 0.2% 210 27.1% 0 - possibly_damaging(0.812) tolerated(0.11) deleterious(0.577) HMMPfam_DAGAT KIF4A 24137 genome.wustl.edu 37 X 69573542 69573542 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012310.4 +1 reviewed p.A520V 1.000 187 0% 167 24.6% 14 0% probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL KIF4A 24137 genome.wustl.edu 37 X 69607079 69607079 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012310.4 +1 reviewed p.R722W 0.473 257 0.4% 116 19% 18 88.8% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL KIF4A 24137 genome.wustl.edu 37 X 69623781 69623781 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012310.4 +1 reviewed p.A896D 0.986 306 0% 67 25.4% 29 100% benign(0.174) tolerated(0.63) neutral(0.019) NULL KIF4A 24137 genome.wustl.edu 37 X 69639612 69639612 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012310.4 +1 reviewed p.V1158 0.993 221 0% 133 21.1% 24 0% - - - NULL DLG3 1741 genome.wustl.edu 37 X 69673642 69673642 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021120.3 +1 reviewed p.S434L 1.000 137 0% 202 25.7% 3 0% possibly_damaging(0.927) deleterious(0) deleterious(0.820) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like TEX11 56159 genome.wustl.edu 37 X 69902670 69902670 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003811.1 -1 reviewed p.S352F 0.638 241 0% 237 26.6% 0 - possibly_damaging(0.716) tolerated(0.05) deleterious(0.605) HMMPfam_SPO22,superfamily_TPR-like TEX11 56159 genome.wustl.edu 37 X 69945140 69945140 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003811.1 -1 reviewed p.G314 0.000 285 0% 166 22.9% 0 - - - - HMMPfam_SPO22,superfamily_TPR-like TEX11 56159 genome.wustl.edu 37 X 70099865 70099865 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001003811.1 -1 reviewed p.E59 0.008 576 0% 203 15.3% 0 - - - - NULL SLC7A3 84889 genome.wustl.edu 37 X 70146728 70146728 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048164.2 -1 reviewed p.L484F 0.101 397 0% 270 22.6% 2 0% benign(0.041) tolerated(0.32) neutral(0.026) NULL IL2RG 3561 genome.wustl.edu 37 X 70329221 70329221 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000206.2 -1 reviewed p.R205I 0.001 285 0% 145 17.2% 155 0% - - - HMMSmart_FN3,superfamily_FN_III-like MED12 9968 genome.wustl.edu 37 X 70346837 70346837 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005120.2 +1 reviewed p.V902I 1.000 380 0% 183 19.7% 9 0% benign(0.183) deleterious(0.04) neutral(0.366) NULL MED12 9968 genome.wustl.edu 37 X 70347846 70347846 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005120.2 +1 reviewed p.P1029S 1.000 297 0% 131 10.7% 19 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL NLGN3 54413 genome.wustl.edu 37 X 70367754 70367754 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018977.3 +1 reviewed p.R52M 1.000 59 0% 79 22.8% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_COesterase,superfamily_SSF53474 NLGN3 54413 genome.wustl.edu 37 X 70368723 70368723 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000358741 +1 known p.R162Q 1.000 222 0% 315 24.8% 0 - benign(0.025) tolerated(0.06) neutral(0.324) HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases NLGN3 54413 genome.wustl.edu 37 X 70375210 70375210 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018977.3 +1 reviewed p.L222I 1.000 357 0% 232 16.8% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_COesterase,superfamily_SSF53474 NLGN3 54413 genome.wustl.edu 37 X 70389537 70389537 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018977.3 +1 reviewed p.A693T 1.000 51 0% 42 19% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GJB1 2705 genome.wustl.edu 37 X 70443570 70443570 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000166.5 +1 reviewed p.G5C 0.953 168 0% 136 21.3% 32 0% possibly_damaging(0.455) deleterious(0.02) deleterious(0.532) HMMPfam_Connexin ZMYM3 9203 genome.wustl.edu 37 X 70464151 70464151 + Splice_Site SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005096.3 -1 reviewed e19+1 1.000 297 0% 253 20.6% 0 - - - - - ZMYM3 9203 genome.wustl.edu 37 X 70464740 70464740 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005096.3 -1 reviewed p.P1004H 1.000 169 0% 137 29.2% 9 77.7% possibly_damaging(0.943) deleterious(0.01) deleterious(0.793) NULL ZMYM3 9203 genome.wustl.edu 37 X 70471420 70471420 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005096.3 -1 reviewed p.K233 1.000 140 0% 111 9.9% 9 22.2% - - - NULL NONO 4841 genome.wustl.edu 37 X 70514379 70514379 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145408.1 +1 reviewed e3+1 1.000 266 0% 95 12.6% 2 100% - - - - TAF1 6872 genome.wustl.edu 37 X 70597630 70597630 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004606.3 +1 reviewed p.A318T 1.000 336 0% 140 25.7% 2 100% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) NULL TAF1 6872 genome.wustl.edu 37 X 70603864 70603864 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004606.3 +1 reviewed p.R687H 1.000 787 0% 241 21.2% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TAF1 6872 genome.wustl.edu 37 X 70608626 70608626 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004606.3 +1 reviewed p.R890C 1.000 658 0% 317 22.1% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TAF1 6872 genome.wustl.edu 37 X 70618454 70618454 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004606.3 +1 reviewed p.R1238Q 0.999 652 0% 289 20.8% 3 0% probably_damaging(0.988) deleterious(0.01) deleterious(0.843) NULL OGT 8473 genome.wustl.edu 37 X 70775087 70775087 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181672.2 +1 reviewed p.A259V 1.000 183 0.5% 106 11.3% 10 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like OGT 8473 genome.wustl.edu 37 X 70781697 70781697 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_181672.2 +1 reviewed p.Y642H 1.000 238 0% 107 15.9% 9 0% probably_damaging(0.985) deleterious(0) deleterious(0.877) NULL ACRC 93953 genome.wustl.edu 37 X 70832293 70832293 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_052957.4 +1 validated p.W613* 1.000 215 0% 182 20.3% 3 0% - - - HMMSmart_SM00731,HMMPfam_SprT-like CXCR3 2833 genome.wustl.edu 37 X 70836420 70836420 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001504.1 -1 reviewed p.S301L 0.521 55 0% 60 26.7% 40 0% benign(0.004) tolerated(0.15) neutral(0.241) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NHSL2 340527 genome.wustl.edu 37 X 71354388 71354388 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000510661 +1 known p.E11D 1.000 64 0% 85 23.5% 0 - possibly_damaging(0.945) tolerated(0.32) neutral(0.414) NULL ERCC6L 54821 genome.wustl.edu 37 X 71426404 71426404 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017669.2 -1 validated p.S738Y 0.131 288 0% 131 16.8% 2 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL RPS4X 6191 genome.wustl.edu 37 X 71493732 71493732 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001007.4 -1 reviewed p.D151N 1.000 364 0.3% 205 14.1% 5027 17.3% benign(0.224) tolerated(0.1) neutral(0.308) HMMPfam_Ribosomal_S4e HDAC8 55869 genome.wustl.edu 37 X 71571647 71571647 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018486.2 -1 reviewed p.T349 0.998 696 0% 178 23% 34 91.1% - - - superfamily_Arginase/deacetylase PHKA1 5255 genome.wustl.edu 37 X 71802442 71802442 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002637.3 -1 reviewed p.P1102S 1.000 168 0% 63 23.8% 11 0% benign(0.011) tolerated(0.23) neutral(0.042) HMMPfam_PHK_AB PHKA1 5255 genome.wustl.edu 37 X 71856149 71856149 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002637.3 -1 reviewed p.T516I 1.000 474 0% 225 20.9% 3 0% possibly_damaging(0.786) tolerated(0.18) neutral(0.350) HMMPfam_PHK_AB ZCCHC13 389874 genome.wustl.edu 37 X 73524565 73524565 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_203303.2 +1 reviewed p.R155Q 1.000 45 0% 51 11.8% 0 - benign(0.005) - - NULL SLC16A2 6567 genome.wustl.edu 37 X 73744370 73744370 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006517.3 +1 reviewed p.R325I 1.000 369 0% 159 13.8% 0 - benign(0.257) tolerated(0.05) neutral(0.372) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter KIAA2022 340533 genome.wustl.edu 37 X 73959252 73959252 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000424929 -1 known p.E115* 1.000 386 0% 149 18.8% 0 - possibly_damaging(0.528) deleterious(0) deleterious(0.623) NULL KIAA2022 340533 genome.wustl.edu 37 X 73959988 73959988 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008537.2 -1 validated p.E1468D 1.000 557 0% 197 18.8% 0 - possibly_damaging(0.945) deleterious(0) deleterious(0.834) NULL KIAA2022 340533 genome.wustl.edu 37 X 73961740 73961740 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001008537.2 -1 validated p.N884K 0.999 202 0% 90 18.9% 0 - benign(0.052) deleterious(0.01) neutral(0.409) NULL ABCB7 22 genome.wustl.edu 37 X 74284923 74284923 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004299.3 -1 reviewed p.R606* 1.000 176 0% 50 20% 38 0% - - - HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,superfamily_SSF52540 ABCB7 22 genome.wustl.edu 37 X 74293702 74293702 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004299.3 -1 reviewed e7+1 1.000 396 0% 86 16.3% 0 - - - - - UPRT 139596 genome.wustl.edu 37 X 74519606 74519606 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145052.3 +1 reviewed p.R200Q 1.000 338 0% 76 17.1% 10 70% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_PRTase-like MAGEE2 139599 genome.wustl.edu 37 X 75004125 75004125 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138703.4 -1 validated p.G254 0.025 148 0% 48 16.7% 0 - - - - HMMPfam_MAGE MAGEE2 139599 genome.wustl.edu 37 X 75004486 75004486 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138703.4 -1 validated p.A134V 0.002 71 0% 29 31% 0 - benign(0.018) tolerated(0.5) neutral(0.011) HMMPfam_MAGE ATRX 546 genome.wustl.edu 37 X 76814285 76814285 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000489.3 -1 reviewed p.G2120E 1.000 179 0% 125 18.4% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases ATRX 546 genome.wustl.edu 37 X 76829806 76829806 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000489.3 -1 reviewed p.R2079* 1.000 297 0.3% 102 24.5% 6 0% - - - HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases ATRX 546 genome.wustl.edu 37 X 76918944 76918944 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000489.3 -1 reviewed p.D1349 1.000 745 0% 345 22% 3 0% - - - NULL ATRX 546 genome.wustl.edu 37 X 76939402 76939402 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000489.3 -1 reviewed p.P449L 0.000 370 0% 201 22.9% 4 0% benign(0.035) tolerated(0.71) neutral(0.004) NULL ATRX 546 genome.wustl.edu 37 X 76939496 76939496 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000489.3 -1 reviewed p.R418* 0.192 301 0.7% 120 20% 1 0% - - - NULL PGAM4 441531 genome.wustl.edu 37 X 77224402 77224402 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029891.2 -1 reviewed p.A245D 1.000 150 0% 145 17.2% 1 0% probably_damaging(0.994) deleterious(0.02) deleterious(0.835) superfamily_SSF53254 PGAM4 441531 genome.wustl.edu 37 X 77224826 77224826 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001029891.2 -1 reviewed p.A104T 1.000 168 0% 227 15.4% 95 0% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_PGAM,superfamily_SSF53254 ATP7A 538 genome.wustl.edu 37 X 77243988 77243988 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.T124N 0.384 267 0% 139 21.6% 0 - benign(0.177) tolerated(0.16) neutral(0.076) superfamily_HMA heavy metal-associated domain ATP7A 538 genome.wustl.edu 37 X 77244766 77244766 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.Q216 1.000 94 0% 34 14.7% 0 - - - - HMMPfam_HMA,superfamily_HMA heavy metal-associated domain ATP7A 538 genome.wustl.edu 37 X 77245142 77245142 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.L342 0.995 349 0% 131 22.9% 0 - - - - HMMPfam_HMA,superfamily_HMA heavy metal-associated domain ATP7A 538 genome.wustl.edu 37 X 77268457 77268457 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.L752M 1.000 546 0% 271 12.5% 4 0% probably_damaging(0.998) tolerated(0.47) deleterious(0.485) NULL ATP7A 538 genome.wustl.edu 37 X 77286914 77286914 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.F1043S 1.000 415 0% 155 17.4% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M ATP7A 538 genome.wustl.edu 37 X 77289293 77289293 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.S1162Y 1.000 384 0% 123 24.4% 1 100% possibly_damaging(0.78) deleterious(0.04) deleterious(0.640) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M ATP7A 538 genome.wustl.edu 37 X 77298097 77298097 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000052.4 +1 reviewed p.K1272N 0.999 557 0% 188 18.6% 2 0% possibly_damaging(0.929) deleterious(0.02) deleterious(0.759) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M PGK1 5230 genome.wustl.edu 37 X 77372821 77372821 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000291.3 +1 reviewed p.P144S 0.756 184 0% 131 28.2% 313 86.9% benign(0) deleterious(0.03) neutral(0.364) HMMPfam_PGK,superfamily_Phosphoglycerate kinase PGK1 5230 genome.wustl.edu 37 X 77378737 77378737 + Missense_Mutation SNP G G T rs137852528 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000291.3 +1 reviewed p.D268Y 1.000 421 0.5% 192 20.8% 535 0% benign(0.048) deleterious(0) neutral(0.448) HMMPfam_PGK,superfamily_Phosphoglycerate kinase TAF9B 51616 genome.wustl.edu 37 X 77393509 77393509 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015975.4 -1 reviewed p.A74T 1.000 361 0% 317 19.2% 8 75% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_TFIID-31kDa,superfamily_Histone-fold ZCCHC5 203430 genome.wustl.edu 37 X 77913642 77913642 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152694.2 -1 reviewed p.Q92H 0.293 98 0% 87 29.9% 0 - probably_damaging(0.981) deleterious(0.02) deleterious(0.808) NULL P2RY10 27334 genome.wustl.edu 37 X 78216598 78216598 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014499.2 +1 reviewed p.A194V 0.000 385 0.3% 77 20.8% 7 0% benign(0) tolerated(0.52) neutral(0.009) HMMPfam_7tm_1,superfamily_SSF81321 TBX22 50945 genome.wustl.edu 37 X 79278684 79278684 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109878.1 +1 reviewed p.L101M 1.000 208 0% 89 23.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_1 TBX22 50945 genome.wustl.edu 37 X 79286169 79286169 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109878.1 +1 reviewed p.K374N 0.995 499 0% 244 27% 0 - possibly_damaging(0.946) tolerated(0.41) neutral(0.405) NULL TBX22 50945 genome.wustl.edu 37 X 79286500 79286500 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001109878.1 +1 reviewed p.L485M 0.997 284 0% 106 14.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL BRWD3 254065 genome.wustl.edu 37 X 79938120 79938120 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153252.4 -1 reviewed p.S1414I 1.000 422 0% 106 20.8% 2 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain BRWD3 254065 genome.wustl.edu 37 X 79945584 79945584 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153252.4 -1 reviewed p.S1204P 1.000 437 0% 186 19.4% 5 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain BRWD3 254065 genome.wustl.edu 37 X 79947444 79947444 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153252.4 -1 reviewed p.P1120H 1.000 188 0% 134 24.6% 6 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL BRWD3 254065 genome.wustl.edu 37 X 80047448 80047448 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153252.4 -1 reviewed p.C112Y 1.000 115 0% 125 20% 1 0% possibly_damaging(0.922) tolerated(0.05) deleterious(0.717) NULL POU3F4 5456 genome.wustl.edu 37 X 82763924 82763924 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000307.3 +1 reviewed p.A198T 1.000 63 0% 55 23.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA POU3F4 5456 genome.wustl.edu 37 X 82764063 82764063 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000307.3 +1 reviewed p.N244T 1.000 64 0% 71 21.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA POU3F4 5456 genome.wustl.edu 37 X 82764160 82764160 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000307.3 +1 reviewed p.G276 1.000 68 0% 81 23.5% 0 - - - - superfamily_Homeodomain_like HDX 139324 genome.wustl.edu 37 X 83730383 83730383 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_144657.4 -1 validated p.T8N 1.000 191 0% 92 25% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMSmart_SM00389,superfamily_Homeodomain-like ZNF711 7552 genome.wustl.edu 37 X 84510354 84510354 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021998.4 +1 reviewed p.D57Y 1.000 612 0% 560 24.3% 0 - probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL ZNF711 7552 genome.wustl.edu 37 X 84519343 84519343 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021998.4 +1 reviewed p.G229C 0.991 406 0% 267 22.8% 1 0% possibly_damaging(0.604) tolerated(0.09) deleterious(0.506) HMMPfam_Zfx_Zfy_act ZNF711 7552 genome.wustl.edu 37 X 84526683 84526683 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021998.4 +1 reviewed p.S712I 1.000 291 0% 61 16.4% 3 0% possibly_damaging(0.924) deleterious(0) deleterious(0.818) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers POF1B 79983 genome.wustl.edu 37 X 84537313 84537313 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024921.3 -1 reviewed p.Q554* 1.000 535 0% 113 23.9% 2 0% - - - NULL POF1B 79983 genome.wustl.edu 37 X 84634301 84634301 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024921.3 -1 reviewed p.R53 1.000 321 0% 119 14.3% 1 0% - - - NULL DACH2 117154 genome.wustl.edu 37 X 85906095 85906095 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053281.3 +1 reviewed p.A233T 1.000 298 0% 56 21.4% 0 - possibly_damaging(0.454) tolerated(0.25) neutral(0.185) NULL DACH2 117154 genome.wustl.edu 37 X 85950160 85950160 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053281.3 +1 reviewed p.Q303H 1.000 166 0% 50 20% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL DACH2 117154 genome.wustl.edu 37 X 85950179 85950179 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_053281.3 +1 reviewed p.N310D 1.000 172 0% 48 29.2% 0 - probably_damaging(0.984) deleterious(0.03) deleterious(0.795) NULL DACH2 117154 genome.wustl.edu 37 X 86068034 86068034 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000484479 +1 known p.I127M 0.998 119 0% 65 12.3% 0 - probably_damaging(0.976) tolerated(0.21) neutral(0.462) NULL KLHL4 56062 genome.wustl.edu 37 X 86869013 86869013 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057162.2 +1 reviewed p.L186 0.992 238 0% 68 17.6% 0 - - - - HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB KLHL4 56062 genome.wustl.edu 37 X 86887399 86887399 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057162.2 +1 reviewed p.V505A 0.068 355 0% 103 19.4% 1 0% benign(0.327) tolerated(0.84) neutral(0.103) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain KLHL4 56062 genome.wustl.edu 37 X 86888855 86888855 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057162.2 +1 reviewed p.Y552 0.973 237 0% 78 29.5% 0 - - - - HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain KLHL4 56062 genome.wustl.edu 37 X 86919895 86919895 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_057162.2 +1 reviewed p.T686I 0.981 410 0% 156 23.1% 0 - benign(0.004) tolerated(0.12) neutral(0.261) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain TGIF2LX 90316 genome.wustl.edu 37 X 89177195 89177195 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138960.3 +1 reviewed p.N37 0.001 252 0% 232 26.7% 0 - - - - NULL TGIF2LX 90316 genome.wustl.edu 37 X 89177283 89177283 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138960.3 +1 reviewed p.D67N 0.010 288 0% 238 17.6% 0 - benign(0.002) tolerated(0.09) neutral(0.296) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like PABPC5 140886 genome.wustl.edu 37 X 90691437 90691437 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080832.2 +1 reviewed p.R287S 1.000 98 0% 139 14.4% 1 0% possibly_damaging(0.457) tolerated(0.09) neutral(0.447) NULL PCDH11X 27328 genome.wustl.edu 37 X 91090755 91090755 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032968.3 +1 reviewed p.I84 1.000 737 0.3% 403 21.1% 0 - - - - HMMPfam_Cadherin_2 PCDH11X 27328 genome.wustl.edu 37 X 91133217 91133217 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032968.3 +1 reviewed p.T660A 1.000 401 0% 230 21.7% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH11X 27328 genome.wustl.edu 37 X 91137925 91137925 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032967.2 +1 reviewed p.T1018I 0.998 635 0% 581 22% 0 - possibly_damaging(0.707) deleterious(0.01) deleterious(0.661) NULL NAP1L3 4675 genome.wustl.edu 37 X 92928063 92928063 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004538.4 -1 reviewed p.P81S 0.999 31 0% 47 31.9% 0 - benign(0.101) tolerated(0.9) neutral(0.007) NULL NAP1L3 4675 genome.wustl.edu 37 X 92928237 92928237 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004538.4 -1 reviewed p.A23T 0.989 43 0% 70 21.4% 1 0% possibly_damaging(0.888) deleterious(0) deleterious(0.792) NULL PCDH19 57526 genome.wustl.edu 37 X 99662469 99662469 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105243.1 -1 reviewed p.R376H 0.993 78 0% 93 26.9% 0 - possibly_damaging(0.925) deleterious(0) deleterious(0.818) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDH19 57526 genome.wustl.edu 37 X 99663085 99663085 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001105243.1 -1 reviewed p.N171D 1.000 72 0% 70 22.9% 0 - benign(0.001) tolerated(0.26) neutral(0.034) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin TSPAN6 7105 genome.wustl.edu 37 X 99891680 99891680 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003270.2 -1 reviewed p.P4 0.218 127 0% 165 13.3% 36 36.1% - - - NULL SYTL4 94121 genome.wustl.edu 37 X 99946190 99946190 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129896.2 -1 reviewed p.P186S 0.041 371 0% 142 18.3% 3 66.6% benign(0.001) tolerated(0.56) neutral(0.006) HMMPfam_RPH3A_effector CSTF2 1478 genome.wustl.edu 37 X 100087826 100087826 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001325.2 +1 reviewed p.E379K 0.999 84 0% 50 24% 26 96.1% possibly_damaging(0.46) deleterious(0.01) deleterious(0.556) NULL NOX1 27035 genome.wustl.edu 37 X 100105257 100105257 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007052.4 -1 reviewed p.P339H 1.000 280 0% 127 25.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like XKRX 402415 genome.wustl.edu 37 X 100169636 100169636 + Silent SNP T T A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212559.2 -1 reviewed p.G360 0.994 124 0% 40 15% 0 - - - - NULL XKRX 402415 genome.wustl.edu 37 X 100183119 100183119 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212559.2 -1 reviewed p.R72* 1.000 397 0% 285 23.2% 0 - - - - NULL XKRX 402415 genome.wustl.edu 37 X 100183197 100183197 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_212559.2 -1 reviewed p.F46V 0.998 353 0% 264 25% 0 - probably_damaging(0.99) deleterious(0.04) deleterious(0.790) NULL ARL13A 392509 genome.wustl.edu 37 X 100228733 100228733 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012990.3 +1 validated p.R19* 0.249 278 0% 415 21.9% 0 - - - - superfamily_SSF52540 TRMT2B 79979 genome.wustl.edu 37 X 100297036 100297036 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024917.5 -1 reviewed p.Q81H 0.999 360 0% 216 18.5% 4 0% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL TAF7L 54457 genome.wustl.edu 37 X 100547799 100547799 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024885.3 -1 reviewed p.E79K 0.004 149 0% 193 22.8% 1 100% benign(0.147) tolerated(0.42) neutral(0.027) NULL BTK 695 genome.wustl.edu 37 X 100614295 100614295 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000061.2 -1 reviewed p.L294M 1.000 273 0.4% 109 22.9% 6 0% unknown(0) deleterious(0) - HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550 HNRNPH2 3188 genome.wustl.edu 37 X 100667107 100667107 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032393.1 +1 reviewed p.R44H 1.000 531 0.2% 313 16.9% 65 30.7% benign(0.004) tolerated(1) - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD HNRNPH2 3188 genome.wustl.edu 37 X 100667373 100667373 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001032393.1 +1 reviewed p.G133R 1.000 427 0% 244 25% 42 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD ARMCX1 51309 genome.wustl.edu 37 X 100808481 100808481 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016608.1 +1 reviewed p.G190C 0.049 68 0% 78 15.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ARMCX6 54470 genome.wustl.edu 37 X 100871304 100871304 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009584.1 -1 validated p.R103W 0.734 127 0.8% 110 18.2% 9 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ARMCX3 51566 genome.wustl.edu 37 X 100880046 100880046 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016607.3 +1 reviewed p.R26I 0.971 250 0% 195 23.1% 14 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL ARMCX2 9823 genome.wustl.edu 37 X 100911059 100911059 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014782.5 -1 reviewed p.L506F 1.000 215 0% 240 17.5% 15 0% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_DUF634,superfamily_ARM-type_fold ARMCX2 9823 genome.wustl.edu 37 X 100912323 100912323 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014782.5 -1 reviewed p.Q84H 0.031 92 0% 69 34.8% 7 57.1% possibly_damaging(0.791) deleterious(0) deleterious(0.741) NULL ZMAT1 84460 genome.wustl.edu 37 X 101138558 101138558 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011657.2 -1 reviewed p.R614M 0.880 372 0% 201 12.4% 2 0% possibly_damaging(0.509) deleterious(0.01) deleterious(0.576) NULL ZMAT1 84460 genome.wustl.edu 37 X 101139687 101139687 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011657.2 -1 reviewed p.A238S 0.001 503 0% 194 17.5% 1 0% benign(0) tolerated(0.18) neutral(0.056) NULL ZMAT1 84460 genome.wustl.edu 37 X 101141683 101141683 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011657.2 -1 reviewed p.V176I 0.009 433 0% 105 18.1% 3 66.6% benign(0.004) tolerated(0.06) neutral(0.323) HMMSmart_SM00451,HMMPfam_zf-C2H2,HMMSmart_SM00355 ZMAT1 84460 genome.wustl.edu 37 X 101153186 101153186 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011657.2 -1 reviewed p.K79R 0.989 342 0% 158 16.5% 0 - possibly_damaging(0.948) tolerated(0.55) neutral(0.398) HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-U1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers NXF2B 728343 genome.wustl.edu 37 X 101615540 101615540 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099686.1 -1 provisional p.A621 0.989 1179 0% 601 11.5% 0 - - - - HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like NXF2B 728343 genome.wustl.edu 37 X 101619978 101619978 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099686.1 -1 provisional p.L450I 0.022 857 0.1% 429 10.3% 0 - benign(0.01) tolerated(0.35) neutral(0.021) HMMPfam_NTF2,superfamily_SSF54427 GPRASP1 9737 genome.wustl.edu 37 X 101910742 101910742 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001099410.1 +1 reviewed p.S634N 0.007 250 0% 203 13.8% 0 - benign(0.022) deleterious(0) neutral(0.446) NULL BHLHB9 80823 genome.wustl.edu 37 X 102005425 102005425 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142524.1 +1 validated p.A501D 1.000 258 0% 221 24% 2 100% probably_damaging(0.962) tolerated(0.52) neutral(0.414) HMMPfam_DUF634,superfamily_ARM-type_fold NXF3 56000 genome.wustl.edu 37 X 102335507 102335507 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022052.1 -1 reviewed p.C308* 0.963 408 0% 226 11.1% 0 - - - - NULL TCEAL7 56849 genome.wustl.edu 37 X 102586470 102586470 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152278.2 +1 provisional p.E47K 0.960 156 0% 181 26% 2 0% benign(0.224) tolerated(0.31) neutral(0.049) HMMPfam_TFA RAB40A 142684 genome.wustl.edu 37 X 102755472 102755472 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080879.2 -1 reviewed p.S71 1.000 364 0% 392 14.8% 0 - - - - HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 PLP1 5354 genome.wustl.edu 37 X 103045491 103045491 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000533.3 +1 reviewed p.V267I 1.000 458 0% 221 10.4% 0 - possibly_damaging(0.892) tolerated(0.51) neutral(0.360) HMMPfam_Myelin_PLP H2BFWT 158983 genome.wustl.edu 37 X 103267759 103267759 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001002916.3 -1 reviewed p.G158 1.000 26 0% 24 20.8% 0 - - - - HMMSmart_H2B,superfamily_Histone-fold MCART6 401612 genome.wustl.edu 37 X 103349182 103349182 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012755.3 -1 validated p.A253 0.992 79 0% 78 21.8% 1 0% - - - superfamily_Mitochondrial carrier,HMMPfam_Mito_carr TEX13A 56157 genome.wustl.edu 37 X 104464816 104464816 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000413579 -1 known p.R89M 0.774 72 0% 55 14.5% 1 100% possibly_damaging(0.909) tolerated(0.06) deleterious(0.684) NULL NRK 203447 genome.wustl.edu 37 X 105144610 105144610 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198465.2 +1 validated e9-1 1.000 680 0% 157 27.4% 0 - - - - - NRK 203447 genome.wustl.edu 37 X 105153158 105153158 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198465.2 +1 validated p.E509K 0.000 98 0% 34 20.6% 0 - possibly_damaging(0.442) deleterious(0.02) deleterious(0.527) NULL NRK 203447 genome.wustl.edu 37 X 105161581 105161581 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198465.2 +1 validated p.R810Q 0.000 445 0% 111 15.3% 0 - benign(0.001) tolerated(0.41) neutral(0.015) NULL CXorf57 55086 genome.wustl.edu 37 X 105855622 105855622 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018015.5 +1 validated p.Y104 0.995 118 0% 113 19.5% 0 - - - - NULL CXorf57 55086 genome.wustl.edu 37 X 105905498 105905498 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018015.5 +1 validated p.S744 0.525 261 0% 82 22% 0 - - - - NULL CXorf57 55086 genome.wustl.edu 37 X 105905513 105905513 + Silent SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018015.5 +1 validated p.G749 0.994 235 0% 78 19.2% 0 - - - - NULL TBC1D8B 54885 genome.wustl.edu 37 X 106091522 106091522 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017752.2 +1 validated p.R609H 0.993 466 0% 225 12.9% 0 - probably_damaging(1) tolerated(0.25) deleterious(0.537) HMMPfam_TBC,HMMSmart_SM00164 MORC4 79710 genome.wustl.edu 37 X 106185367 106185367 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024657.4 -1 reviewed p.E821K 1.000 569 0% 228 19.3% 31 90.3% benign(0.277) deleterious(0) deleterious(0.474) NULL MORC4 79710 genome.wustl.edu 37 X 106229368 106229368 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024657.4 -1 reviewed p.G124D 1.000 286 0% 146 22.6% 7 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase MORC4 79710 genome.wustl.edu 37 X 106229374 106229374 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024657.4 -1 reviewed p.G122D 1.000 281 0% 149 18.1% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase TSC22D3 1831 genome.wustl.edu 37 X 106957755 106957755 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_198057.2 -1 reviewed p.A199 0.984 112 0% 166 28.9% 49 87.7% - - - NULL MID2 11043 genome.wustl.edu 37 X 107084163 107084163 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012216.3 +1 reviewed p.L90M 1.000 188 0% 126 22.2% 1 0% probably_damaging(0.994) deleterious(0.02) deleterious(0.835) superfamily_RING/U-box MID2 11043 genome.wustl.edu 37 X 107160967 107160967 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012216.3 +1 reviewed p.R478Q 1.000 237 0.8% 75 22.7% 0 - possibly_damaging(0.85) tolerated(0.42) neutral(0.341) HMMSmart_SM00060,superfamily_Fibronectin type III MID2 11043 genome.wustl.edu 37 X 107167642 107167642 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012216.3 +1 reviewed p.G502V 1.000 198 0% 103 27.2% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MID2 11043 genome.wustl.edu 37 X 107169460 107169460 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012216.3 +1 reviewed p.Y578 1.000 121 0% 96 19.8% 2 0% - - - NULL VSIG1 340547 genome.wustl.edu 37 X 107320556 107320556 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182607.4 +1 reviewed p.P370H 0.369 256 0% 125 22.4% 0 - unknown(0) deleterious(0.05) - NULL COL4A6 1288 genome.wustl.edu 37 X 107408265 107408265 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001847.2 -1 reviewed p.R1272H 0.937 17 5.9% 11 36.4% 0 - probably_damaging(0.994) tolerated(0.39) neutral(0.468) HMMPfam_Collagen GUCY2F 2986 genome.wustl.edu 37 X 108641882 108641882 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001522.2 -1 reviewed p.S724I 0.501 221 0% 53 18.9% 0 - benign(0) tolerated(0.2) neutral(0.049) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ACSL4 2182 genome.wustl.edu 37 X 108887277 108887277 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022977.2 -1 reviewed p.R706Q 1.000 556 0% 623 20.9% 10 50% possibly_damaging(0.947) tolerated(0.13) deleterious(0.643) superfamily_Acetyl-CoA synthetase-like ACSL4 2182 genome.wustl.edu 37 X 108921595 108921595 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_022977.2 -1 reviewed p.M276I 1.000 274 0% 221 19.5% 9 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like RGAG1 57529 genome.wustl.edu 37 X 109695499 109695499 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020769.2 +1 validated p.P552S 0.041 228 0% 202 14.4% 0 - benign(0.001) tolerated(0.73) neutral(0.002) NULL CHRDL1 91851 genome.wustl.edu 37 X 110005970 110005970 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001143981.1 -1 reviewed p.L54M 1.000 435 0.2% 110 19.1% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_VWC,HMMSmart_SM00214,superfamily_Fibronectin type I module PAK3 5063 genome.wustl.edu 37 X 110406191 110406191 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128168.1 +1 reviewed p.E209* 1.000 496 0% 110 15.5% 0 - - - - NULL PAK3 5063 genome.wustl.edu 37 X 110406257 110406257 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001128168.1 +1 reviewed p.P231S 1.000 521 0% 127 20.5% 0 - possibly_damaging(0.523) tolerated(0.1) neutral(0.463) NULL CAPN6 827 genome.wustl.edu 37 X 110489922 110489922 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014289.3 -1 reviewed p.S603 0.077 279 0% 127 24.4% 9 100% - - - HMMSmart_C2,superfamily_C2_CaLB CAPN6 827 genome.wustl.edu 37 X 110490641 110490641 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014289.3 -1 reviewed p.Q566H 1.000 360 0% 203 19.7% 5 0% probably_damaging(0.964) deleterious(0.04) deleterious(0.755) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB ALG13 79868 genome.wustl.edu 37 X 110925441 110925441 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018466.4 +1 reviewed p.S55P 0.001 281 0% 334 26% 10 40% benign(0.181) tolerated(0.21) neutral(0.060) HMMPfam_Glyco_tran_28_C,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase ALG13 79868 genome.wustl.edu 37 X 110964896 110964896 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000394780 +1 known p.I464 1.000 373 0% 141 13.5% 3 0% - - - NULL ALG13 79868 genome.wustl.edu 37 X 110970114 110970114 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000394780 +1 known p.A603T 1.000 277 0% 52 17.3% 5 0% probably_damaging(0.98) deleterious(0.04) deleterious(0.773) NULL ZCCHC16 340595 genome.wustl.edu 37 X 111698206 111698206 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001004308.2 +1 validated p.A84S 0.000 257 0% 73 26% 0 - benign(0) tolerated(0.84) neutral(0.001) NULL LHFPL1 340596 genome.wustl.edu 37 X 111874661 111874661 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178175.3 -1 reviewed p.C217Y 0.998 269 0% 94 16% 0 - possibly_damaging(0.8) deleterious(0) deleterious(0.746) NULL LHFPL1 340596 genome.wustl.edu 37 X 111914390 111914390 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178175.3 -1 reviewed p.P77S 1.000 141 0% 102 23.5% 1 0% probably_damaging(0.98) deleterious(0.02) deleterious(0.807) HMMPfam_L_HGMIC_fpl AMOT 154796 genome.wustl.edu 37 X 112022627 112022627 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001113490.1 -1 reviewed p.A919T 0.120 57 0% 38 31.6% 2 100% unknown(0) tolerated(0.31) - NULL HTR2C 3358 genome.wustl.edu 37 X 113965995 113965995 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000868.2 +1 reviewed p.S110P 0.930 320 0% 276 21.4% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_7tm_1,superfamily_SSF81321 LRCH2 57631 genome.wustl.edu 37 X 114419017 114419017 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020871.3 -1 validated p.S193Y 1.000 315 0% 294 22.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_LRR_1,superfamily_SSF52058 RBMXL3 139804 genome.wustl.edu 37 X 114424868 114424868 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145346.1 +1 validated p.D288 0.009 31 0% 53 24.5% 0 - - - - NULL RBMXL3 139804 genome.wustl.edu 37 X 114424898 114424898 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145346.1 +1 validated p.G298 0.995 34 0% 50 12% 0 - - - - NULL RBMXL3 139804 genome.wustl.edu 37 X 114425771 114425771 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145346.1 +1 validated p.G589 0.746 72 0% 87 23% 0 - - - - NULL RBMXL3 139804 genome.wustl.edu 37 X 114426273 114426273 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145346.1 +1 validated p.P757S 0.934 65 0% 74 27% 0 - possibly_damaging(0.863) deleterious(0) deleterious(0.778) NULL RBMXL3 139804 genome.wustl.edu 37 X 114426988 114426988 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145346.1 +1 validated p.S995N 0.317 58 0% 68 29.4% 0 - possibly_damaging(0.873) deleterious(0) deleterious(0.784) NULL LUZP4 51213 genome.wustl.edu 37 X 114524338 114524338 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016383.3 +1 validated p.R5W 0.000 194 0.5% 84 21.4% 0 - unknown(0) - - NULL PLS3 5358 genome.wustl.edu 37 X 114869321 114869321 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136025.3 +1 reviewed p.I237 1.000 697 0% 316 19% 98 0% - - - HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain PLS3 5358 genome.wustl.edu 37 X 114871167 114871167 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001136025.3 +1 reviewed p.R256 0.991 206 0% 94 20.2% 67 62.6% - - - superfamily_Calponin-homology domain CH-domain LOC642357 642357 genome.wustl.edu 37 X 114937331 114937331 + RNA SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XR_016681.3 +1 model NULL 0.995 133 0% 66 22.7% 0 - - - - - LOC653155 653155 genome.wustl.edu 37 X 115882620 115882620 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_926254.3 -1 model p.D72Y 1.000 198 0% 43 16.3% 9 0% - - - NULL WDR44 54521 genome.wustl.edu 37 X 117526732 117526732 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000371848 +1 known p.R8W 0.948 134 0% 56 23.2% 3 0% - - - NULL WDR44 54521 genome.wustl.edu 37 X 117575510 117575510 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019045.4 +1 reviewed p.F718L 1.000 257 0% 99 23.2% 7 0% possibly_damaging(0.896) tolerated(0.14) deleterious(0.603) HMMSmart_SM00320,superfamily_WD40 repeat-like WDR44 54521 genome.wustl.edu 37 X 117576289 117576289 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019045.4 +1 reviewed p.P750H 1.000 452 0% 157 14% 3 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00320,superfamily_WD40 repeat-like WDR44 54521 genome.wustl.edu 37 X 117577650 117577650 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_019045.4 +1 reviewed p.A838S 1.000 448 0% 150 10.7% 10 20% possibly_damaging(0.929) deleterious(0.03) deleterious(0.740) superfamily_WD40 repeat-like IL13RA1 3597 genome.wustl.edu 37 X 117900825 117900825 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001560.2 +1 reviewed p.V299F 0.000 175 0% 163 17.8% 29 0% possibly_damaging(0.796) deleterious(0.03) deleterious(0.663) superfamily_Fibronectin type III ZCCHC12 170261 genome.wustl.edu 37 X 117959857 117959857 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173798.2 +1 provisional p.R217M 0.990 66 0% 61 16.4% 14 0% probably_damaging(0.988) deleterious(0) deleterious(0.882) NULL ZCCHC12 170261 genome.wustl.edu 37 X 117960245 117960245 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173798.2 +1 provisional p.R346 0.024 266 0% 162 22.2% 9 11.1% - - - NULL LONRF3 79836 genome.wustl.edu 37 X 118112308 118112308 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031855.1 +1 reviewed p.A273V 1.000 435 0% 527 24.5% 0 - benign(0.418) tolerated(0.24) neutral(0.173) HMMSmart_SM00028,superfamily_TPR-like LONRF3 79836 genome.wustl.edu 37 X 118116815 118116815 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001031855.1 +1 reviewed p.T323I 0.995 470 0% 289 23.9% 0 - possibly_damaging(0.62) deleterious(0.03) deleterious(0.581) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like LONRF3 79836 genome.wustl.edu 37 X 118147053 118147053 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439603 +1 known p.*387R 0.002 183 0% 87 17.2% 3 100% - - - HMMPfam_LON,HMMSmart_SM00464 LONRF3 79836 genome.wustl.edu 37 X 118148283 118148283 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000439603 +1 known p.L462F 1.000 516 0% 233 18.9% 2 0% - - - HMMPfam_LON,HMMSmart_SM00464 LOC727838 727838 genome.wustl.edu 37 X 118208978 118208978 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343842.1 +1 model p.G273 0.000 1361 0% 1484 14.1% 0 - - - - NULL ENSG00000248857 0 genome.wustl.edu 37 X 118221200 118221200 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440399 -1 known p.T738A 0.000 158 0% 92 22.8% 0 - - - - NULL ENSG00000248857 0 genome.wustl.edu 37 X 118221788 118221788 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000440399 -1 known p.V542I 0.000 177 0% 73 19.2% 0 - - - - NULL SLC25A43 203427 genome.wustl.edu 37 X 118586920 118586920 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_145305.2 +1 reviewed p.S306 1.000 362 0% 197 24.9% 12 83.3% - - - NULL SEPT6 23157 genome.wustl.edu 37 X 118786967 118786967 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_015129.5 -1 reviewed p.F126 0.985 430 0% 181 26.5% 42 0% - - - HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases RPL39 6170 genome.wustl.edu 37 X 118923906 118923906 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000422326 -1 known p.P72T 0.729 425 0% 327 18% 1162 49.4% - - - HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e UPF3B 65109 genome.wustl.edu 37 X 118974640 118974640 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080632.1 -1 reviewed p.R272M 1.000 352 0% 202 13.9% 0 - possibly_damaging(0.894) tolerated(0.05) deleterious(0.698) NULL UPF3B 65109 genome.wustl.edu 37 X 118977174 118977174 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_080632.1 -1 reviewed p.A187V 1.000 1286 0% 706 19.3% 8 0% possibly_damaging(0.9) tolerated(0.5) neutral(0.366) HMMPfam_Smg4_UPF3 RHOXF2 84528 genome.wustl.edu 37 X 119293186 119293186 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032498.1 +1 provisional p.G115 0.000 128 0% 126 15.1% 0 - - - - NULL ZBTB33 10009 genome.wustl.edu 37 X 119387312 119387312 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006777.3 +1 reviewed p.Y14* 1.000 187 0% 244 16.4% 1 100% - - - superfamily_POZ domain ZBTB33 10009 genome.wustl.edu 37 X 119388839 119388839 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006777.3 +1 reviewed p.P523 0.761 163 0% 170 23.5% 9 0% - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ATP1B4 23439 genome.wustl.edu 37 X 119512555 119512555 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001142447.2 +1 reviewed p.R280Q 1.000 332 0% 89 19.1% 0 - possibly_damaging(0.666) tolerated(0.68) neutral(0.238) HMMPfam_Na_K-ATPase CT47B1 643311 genome.wustl.edu 37 X 120008973 120008973 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001145718.1 -1 validated p.G184 0.000 135 0% 143 26.6% 0 - - - - NULL GLUD2 2747 genome.wustl.edu 37 X 120181874 120181874 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012084.3 +1 reviewed p.C112 1.000 89 0% 102 19.6% 28 3.5% - - - HMMPfam_ELFV_dehydrog_N,superfamily_SSF53223 GRIA3 2892 genome.wustl.edu 37 X 122551432 122551432 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000828.4 +1 reviewed p.S560Y 1.000 739 0% 221 18.1% 0 - - - - NULL GRIA3 2892 genome.wustl.edu 37 X 122616686 122616686 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000264357 +1 known p.G826S 1.000 413 0% 175 20% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Lig_chan THOC2 57187 genome.wustl.edu 37 X 122754801 122754801 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081550.1 -1 validated p.K1411T 1.000 396 0% 136 27.2% 28 75% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) NULL THOC2 57187 genome.wustl.edu 37 X 122757100 122757100 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081550.1 -1 validated p.M1180V 1.000 416 0% 133 22.6% 23 0% benign(0.007) deleterious(0.02) neutral(0.383) NULL THOC2 57187 genome.wustl.edu 37 X 122772816 122772816 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081550.1 -1 validated p.Y603 1.000 478 0.2% 193 18.1% 11 0% - - - NULL XIAP 331 genome.wustl.edu 37 X 123034364 123034364 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001167.2 +1 reviewed p.P374H 0.989 279 0% 137 21.9% 9 100% probably_damaging(0.97) deleterious(0) deleterious(0.857) superfamily_SSF57924 STAG2 10735 genome.wustl.edu 37 X 123227989 123227989 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042749.1 +1 validated p.D1234N 1.000 516 0% 185 15.7% 55 1.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SH2D1A 4068 genome.wustl.edu 37 X 123499649 123499649 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002351.4 +1 reviewed p.T59I 1.000 756 0% 336 22% 6 0% possibly_damaging(0.912) deleterious(0.04) deleterious(0.712) HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain ODZ1 10178 genome.wustl.edu 37 X 123514498 123514498 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014253.3 -1 reviewed p.R2689Q 1.000 470 0% 150 24% 0 - benign(0.288) tolerated(0.24) neutral(0.126) NULL ODZ1 10178 genome.wustl.edu 37 X 123654547 123654547 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014253.3 -1 reviewed p.R1041W 0.108 291 0% 84 17.9% 0 - benign(0.015) deleterious(0) neutral(0.445) NULL ODZ1 10178 genome.wustl.edu 37 X 124097421 124097421 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014253.3 -1 reviewed p.S61I 0.998 680 0% 547 19.4% 0 - benign(0.01) tolerated(0.33) neutral(0.025) HMMPfam_Ten_N DCAF12L2 340578 genome.wustl.edu 37 X 125299013 125299013 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013628.2 -1 reviewed p.L299 0.991 33 0% 75 24% 0 - - - - superfamily_WD40_like ACTRT1 139741 genome.wustl.edu 37 X 127186018 127186018 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138289.3 -1 reviewed p.F56 0.002 196 0.5% 50 22% 0 - - - - HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 SMARCA1 6594 genome.wustl.edu 37 X 128602775 128602775 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003069.3 -1 reviewed p.S891 0.625 368 0% 151 20.5% 58 0% - - - HMMSmart_SM00717,superfamily_Homeodomain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases OCRL 4952 genome.wustl.edu 37 X 128709144 128709144 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000276.3 +1 reviewed p.R544W 1.000 624 0% 317 19.9% 11 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_DNase I-like OCRL 4952 genome.wustl.edu 37 X 128724122 128724122 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000276.3 +1 reviewed e24-1 1.000 522 0% 191 17.8% 0 - - - - - XPNPEP2 7512 genome.wustl.edu 37 X 128880223 128880223 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003399.5 +1 reviewed p.V104M 1.000 92 0% 83 26.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Creatinase_N,superfamily_SSF53092 XPNPEP2 7512 genome.wustl.edu 37 X 128896671 128896671 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003399.5 +1 reviewed p.E555D 1.000 291 0% 140 22.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core XPNPEP2 7512 genome.wustl.edu 37 X 128902332 128902332 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003399.5 +1 reviewed p.R632 0.043 85 0% 39 15.4% 0 - - - - NULL UTP14A 10813 genome.wustl.edu 37 X 129053155 129053155 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006649.3 +1 reviewed p.R181I 1.000 326 0% 202 23.3% 15 0% probably_damaging(0.98) deleterious(0.03) deleterious(0.788) HMMPfam_Utp14 UTP14A 10813 genome.wustl.edu 37 X 129063352 129063352 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006649.3 +1 reviewed p.F695S 1.000 414 0% 433 23.1% 52 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Utp14 BCORL1 63035 genome.wustl.edu 37 X 129148182 129148182 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021946.3 +1 reviewed p.L478 0.929 81 0% 46 28.3% 0 - - - - NULL BCORL1 63035 genome.wustl.edu 37 X 129150142 129150142 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021946.3 +1 reviewed p.L1132I 0.002 22 0% 21 23.8% 3 0% benign(0.026) tolerated(0.13) neutral(0.254) NULL BCORL1 63035 genome.wustl.edu 37 X 129154987 129154987 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021946.3 +1 reviewed p.E1157K 1.000 127 0% 94 11.7% 3 0% probably_damaging(0.991) deleterious(0.03) deleterious(0.808) NULL BCORL1 63035 genome.wustl.edu 37 X 129159112 129159112 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021946.3 +1 reviewed p.S1279I 1.000 108 0% 92 20.7% 0 - probably_damaging(0.996) tolerated(0.08) deleterious(0.762) NULL BCORL1 63035 genome.wustl.edu 37 X 129162819 129162819 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021946.3 +1 reviewed p.V1430I 0.164 145 0% 108 21.3% 7 0% benign(0.001) tolerated(0.13) neutral(0.253) superfamily_Ankyrin repeat BCORL1 63035 genome.wustl.edu 37 X 129173212 129173212 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021946.3 +1 reviewed p.A1525S 0.988 73 0% 56 26.8% 6 0% possibly_damaging(0.947) deleterious(0.03) deleterious(0.755) superfamily_Ankyrin repeat ELF4 2000 genome.wustl.edu 37 X 129201262 129201262 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127197.1 -1 reviewed p.A476S 0.996 66 0% 65 20% 9 77.7% benign(0.028) tolerated(0.71) neutral(0.003) NULL ELF4 2000 genome.wustl.edu 37 X 129208638 129208638 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001127197.1 -1 reviewed p.D55 0.218 260 0.8% 160 26.9% 5 20% - - - NULL RAB33A 9363 genome.wustl.edu 37 X 129318525 129318525 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004794.2 +1 reviewed p.M175I 1.000 177 0% 105 23.8% 1 0% benign(0.022) tolerated(0.92) neutral(0.001) HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 ZNF280C 55609 genome.wustl.edu 37 X 129361712 129361712 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017666.4 -1 validated p.L398I 1.000 632 0% 162 17.3% 1 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355 ZNF280C 55609 genome.wustl.edu 37 X 129370484 129370484 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017666.4 -1 validated p.G208D 0.000 543 0% 208 24.5% 2 0% benign(0) tolerated(0.29) neutral(0.029) NULL GPR119 139760 genome.wustl.edu 37 X 129518824 129518824 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_178471.2 -1 reviewed p.R200* 0.831 166 0% 64 28.1% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 RBMX2 51634 genome.wustl.edu 37 X 129546568 129546568 + Nonsense_Mutation SNP G G T rs6654608 TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016024.2 +1 validated p.E239* 0.016 241 0.4% 135 20.7% 37 0% - - - NULL ENOX2 10495 genome.wustl.edu 37 X 129771326 129771326 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182314.1 -1 reviewed p.L425 0.311 673 0.1% 417 26.4% 5 60% - - - NULL IGSF1 3547 genome.wustl.edu 37 X 130407783 130407783 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001555.4 -1 reviewed p.P1333L 0.024 380 0% 288 21.2% 3 0% benign(0.079) tolerated(0.08) neutral(0.305) NULL IGSF1 3547 genome.wustl.edu 37 X 130412502 130412502 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001555.4 -1 reviewed p.Y658 1.000 77 0% 94 23.4% 0 - - - - superfamily_Immunoglobulin IGSF1 3547 genome.wustl.edu 37 X 130416510 130416510 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001555.4 -1 reviewed p.S385N 0.317 217 0% 156 21.8% 0 - benign(0.028) tolerated(0.47) neutral(0.012) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin IGSF1 3547 genome.wustl.edu 37 X 130419945 130419945 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001555.4 -1 reviewed p.R59* 0.996 207 0.5% 147 20.4% 0 - - - - HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin FRMD7 90167 genome.wustl.edu 37 X 131231311 131231311 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194277.2 -1 reviewed p.L89 0.995 239 0% 80 13.8% 0 - - - - HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 FRMD7 90167 genome.wustl.edu 37 X 131234650 131234650 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_194277.2 -1 reviewed p.S51Y 1.000 410 0% 104 15.4% 0 - possibly_damaging(0.68) deleterious(0.04) deleterious(0.591) HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236 RAP2C 57826 genome.wustl.edu 37 X 131348311 131348311 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021183.3 -1 provisional p.S146L 1.000 291 0% 345 12.8% 15 60% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases HS6ST2 90161 genome.wustl.edu 37 X 131762592 131762592 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077188.1 -1 reviewed p.D533Y 1.000 377 0% 95 21.1% 9 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_HS6ST HS6ST2 90161 genome.wustl.edu 37 X 131803196 131803196 + Missense_Mutation SNP C C T rs187567949 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001077188.1 -1 reviewed p.A338T 0.964 408 0% 123 10.6% 0 - benign(0.016) tolerated(0.06) neutral(0.323) HMMPfam_HS6ST TFDP3 51270 genome.wustl.edu 37 X 132351308 132351308 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016521.2 -1 reviewed p.P327L 1.000 233 0% 228 20.6% 0 - probably_damaging(0.995) tolerated(0.17) deleterious(0.516) HMMPfam_DP TFDP3 51270 genome.wustl.edu 37 X 132352096 132352096 + Silent SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016521.2 -1 reviewed p.R64 0.964 467 0% 465 22.8% 0 - - - - NULL GPC4 2239 genome.wustl.edu 37 X 132458477 132458477 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001448.2 -1 reviewed p.S136Y 0.997 127 0% 35 17.1% 11 0% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_Glypican GPC4 2239 genome.wustl.edu 37 X 132458553 132458553 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001448.2 -1 reviewed p.E111* 1.000 57 0% 20 30% 2 0% - - - HMMPfam_Glypican GPC3 2719 genome.wustl.edu 37 X 132670183 132670183 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004484.3 -1 reviewed p.S571L 0.000 403 0% 109 22% 0 - benign(0.055) tolerated(0.37) neutral(0.022) HMMPfam_Glypican PHF6 84295 genome.wustl.edu 37 X 133551318 133551318 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001015877.1 +1 reviewed p.S318 1.000 470 0% 120 19.2% 6 100% - - - HMMSmart_SM00249 PLAC1 10761 genome.wustl.edu 37 X 133700567 133700567 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_021796.3 -1 provisional p.C49Y 0.004 292 0% 107 17.8% 0 - benign(0) tolerated(1) - NULL FAM122C 159091 genome.wustl.edu 37 X 133988148 133988148 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000370784 +1 known p.T157M 0.244 614 0.2% 265 20.4% 3 0% unknown(0) - - NULL ZNF75D 7626 genome.wustl.edu 37 X 134426231 134426231 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007131.3 -1 reviewed p.E194* 0.020 402 0% 270 22.2% 2 0% - - - NULL ZNF75D 7626 genome.wustl.edu 37 X 134427985 134427985 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_007131.3 -1 reviewed p.E28* 0.000 99 0% 71 23.9% 3 0% - - - NULL ZNF449 203523 genome.wustl.edu 37 X 134494753 134494753 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152695.5 +1 reviewed p.C437R 0.977 184 0.5% 97 19.6% 4 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DDX26B 203522 genome.wustl.edu 37 X 134680349 134680349 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182540.4 +1 validated p.I128 1.000 253 0% 131 19.8% 1 0% - - - superfamily_vWA-like DDX26B 203522 genome.wustl.edu 37 X 134681172 134681172 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182540.4 +1 validated p.P242S 1.000 326 0% 122 16.4% 2 0% possibly_damaging(0.767) deleterious(0.02) deleterious(0.667) NULL DDX26B 203522 genome.wustl.edu 37 X 134683578 134683578 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_182540.4 +1 validated p.D252Y 0.998 290 0.3% 112 25.9% 2 0% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) NULL LOC644717 644717 genome.wustl.edu 37 X 134812043 134812043 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 XM_002343850.1 -1 model p.P132T 0.000 306 1% 127 22% 0 - - - - NULL SAGE1 55511 genome.wustl.edu 37 X 134994956 134994956 + Splice_Site SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018666.2 +1 reviewed e19-1 0.986 251 0.4% 97 22.7% 0 - - - - - SLC9A6 10479 genome.wustl.edu 37 X 135095153 135095153 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042537.1 +1 reviewed p.G363C 0.993 380 0% 177 21.5% 4 100% probably_damaging(0.979) tolerated(0.2) deleterious(0.471) HMMPfam_Na_H_Exchanger SLC9A6 10479 genome.wustl.edu 37 X 135095159 135095159 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001042537.1 +1 reviewed p.F365L 1.000 373 0% 183 24.6% 3 0% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) HMMPfam_Na_H_Exchanger FHL1 2273 genome.wustl.edu 37 X 135290086 135290086 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001449.4 +1 reviewed p.T156I 1.000 176 0% 85 21.2% 15 6.6% benign(0.001) tolerated(0.08) neutral(0.300) HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain) MAP7D3 79649 genome.wustl.edu 37 X 135310845 135310845 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024597.3 -1 reviewed p.R608H 0.012 441 0% 213 23% 7 85.7% possibly_damaging(0.484) tolerated(0.62) neutral(0.165) HMMPfam_MAP7 MAP7D3 79649 genome.wustl.edu 37 X 135313780 135313780 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024597.3 -1 reviewed p.V446M 0.000 253 0% 142 22.5% 5 0% benign(0.358) tolerated(0.11) neutral(0.385) NULL MAP7D3 79649 genome.wustl.edu 37 X 135326844 135326844 + Nonsense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024597.3 -1 reviewed p.Q122* 0.090 1038 0% 1028 19.6% 1 0% - - - NULL MAP7D3 79649 genome.wustl.edu 37 X 135328444 135328444 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024597.3 -1 reviewed p.V43I 0.000 501 0% 515 21.9% 7 0% benign(0.046) tolerated(0.89) neutral(0.003) NULL GPR112 139378 genome.wustl.edu 37 X 135426787 135426787 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153834.3 +1 reviewed p.D308N 0.000 409 0% 131 10.7% 0 - benign(0.005) tolerated(0.24) neutral(0.037) NULL GPR112 139378 genome.wustl.edu 37 X 135427224 135427224 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153834.3 +1 reviewed p.K453N 0.008 127 0.8% 52 26.9% 0 - benign(0.017) deleterious(0) neutral(0.445) NULL GPR112 139378 genome.wustl.edu 37 X 135429114 135429114 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153834.3 +1 reviewed p.D1083E 0.006 234 0% 33 15.2% 0 - possibly_damaging(0.615) deleterious(0) deleterious(0.658) NULL GPR112 139378 genome.wustl.edu 37 X 135455169 135455169 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153834.3 +1 reviewed p.T2574 0.000 287 0% 83 19.3% 0 - - - - NULL GPR112 139378 genome.wustl.edu 37 X 135498631 135498631 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_153834.3 +1 reviewed p.P3075L 0.124 311 0% 155 21.9% 0 - benign(0.079) - - NULL BRS3 680 genome.wustl.edu 37 X 135574407 135574407 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001727.1 +1 validated p.A358D 0.000 192 0% 161 26.1% 0 - benign(0.017) tolerated(0.27) neutral(0.034) NULL VGLL1 51442 genome.wustl.edu 37 X 135631084 135631084 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016267.3 +1 reviewed p.S184Y 0.008 70 0% 31 29% 0 - probably_damaging(0.99) deleterious(0.04) deleterious(0.790) NULL ARHGEF6 9459 genome.wustl.edu 37 X 135767874 135767874 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004840.2 -1 reviewed p.F452L 0.997 479 0% 237 23.2% 2 0% benign(0.001) tolerated(0.16) neutral(0.059) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ARHGEF6 9459 genome.wustl.edu 37 X 135827433 135827433 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004840.2 -1 reviewed p.Q136H 0.362 439 0% 259 18.1% 5 0% benign(0.009) deleterious(0.02) neutral(0.384) NULL RBMX 27316 genome.wustl.edu 37 X 135957424 135957424 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002139.3 -1 reviewed p.G259R 1.000 678 0% 304 15.8% 214 89.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RBMX 27316 genome.wustl.edu 37 X 135961237 135961237 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002139.3 -1 reviewed p.A52D 1.000 427 0% 332 20.8% 91 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD ZIC3 7547 genome.wustl.edu 37 X 136649636 136649636 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003413.3 +1 reviewed p.S262 1.000 23 0% 47 14.9% 0 - - - - HMMSmart_ZnF_C2H2 ZIC3 7547 genome.wustl.edu 37 X 136649639 136649639 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003413.3 +1 reviewed p.R263 1.000 26 0% 51 29.4% 0 - - - - HMMSmart_ZnF_C2H2 ZIC3 7547 genome.wustl.edu 37 X 136652125 136652125 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003413.3 +1 reviewed p.A434S 1.000 244 0% 305 12.5% 0 - benign(0) tolerated(0.95) - NULL FGF13 2258 genome.wustl.edu 37 X 137821414 137821414 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_033642.2 -1 reviewed p.K6 1.000 461 0% 106 24.5% 0 - - - - NULL CXorf66 347487 genome.wustl.edu 37 X 139038644 139038644 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001013403.2 -1 validated p.K166T 0.000 995 0% 465 24.7% 0 - benign(0.009) tolerated(0.4) neutral(0.017) NULL SOX3 6658 genome.wustl.edu 37 X 139586541 139586541 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005634.2 -1 reviewed p.L229I 1.000 18 0% 19 26.3% 3 0% possibly_damaging(0.643) tolerated(0.12) deleterious(0.486) NULL ENSG00000207041 0 genome.wustl.edu 37 X 140212218 140212218 + RNA SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000384314 -1 known NULL 0.000 285 0% 263 19.8% 0 - - - - - MAGEC3 139081 genome.wustl.edu 37 X 140969522 140969522 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_138702.1 +1 reviewed p.I283 0.001 328 0% 103 17.5% 0 - - - - HMMPfam_MAGE MAGEC1 9947 genome.wustl.edu 37 X 140995273 140995273 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005462.4 +1 reviewed p.P695S 0.001 103 0% 81 21% 0 - unknown(0) tolerated(0.22) - NULL MAGEC2 51438 genome.wustl.edu 37 X 141291041 141291041 + Missense_Mutation SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_016249.3 -1 reviewed p.S245P 0.002 271 0% 241 23.2% 0 - benign(0.021) tolerated(0.56) neutral(0.007) HMMPfam_MAGE SLITRK4 139065 genome.wustl.edu 37 X 142716851 142716851 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173078.3 -1 reviewed p.E692* 1.000 151 0% 140 25% 2 0% - - - NULL SLITRK4 139065 genome.wustl.edu 37 X 142718719 142718719 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173078.3 -1 reviewed p.N69S 1.000 57 0% 93 25.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_L domain-like SPANXN2 494119 genome.wustl.edu 37 X 142795281 142795281 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009615.1 -1 provisional p.G133R 0.000 801 0% 295 12.2% 0 - unknown(0) tolerated(0.74) - NULL SPANXN2 494119 genome.wustl.edu 37 X 142795303 142795303 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009615.1 -1 provisional p.D125 0.000 830 0.2% 299 14.7% 0 - - - - NULL UBE2NL 389898 genome.wustl.edu 37 X 142967263 142967263 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001012989.1 +1 reviewed p.P21T 1.000 106 0% 78 14.1% 0 - benign(0) tolerated(0.22) neutral(0.042) HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like SPANXN1 494118 genome.wustl.edu 37 X 144337274 144337274 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009614.2 +1 reviewed p.A53 0.000 906 0% 389 17.7% 0 - - - - HMMPfam_SPAN-X SLITRK2 84631 genome.wustl.edu 37 X 144903965 144903965 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144003.2 +1 reviewed p.L8I 1.000 178 0% 244 25% 0 - benign(0.034) tolerated(0.42) neutral(0.016) NULL SLITRK2 84631 genome.wustl.edu 37 X 144905975 144905975 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001144003.2 +1 reviewed p.D678N 0.998 132 0% 150 22% 0 - benign(0.097) tolerated(0.5) neutral(0.018) NULL FMR1 2332 genome.wustl.edu 37 X 147014233 147014233 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002024.5 +1 reviewed p.S277R 1.000 314 0.3% 166 17.5% 16 0% benign(0.327) tolerated(0.25) neutral(0.139) HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) FMR1 2332 genome.wustl.edu 37 X 147024799 147024799 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002024.5 +1 reviewed p.P475L 1.000 331 0% 206 21.4% 23 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL FMR1 2332 genome.wustl.edu 37 X 147027130 147027130 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002024.5 +1 reviewed p.S577 0.984 360 0% 210 17.6% 36 86.1% possibly_damaging(0.877) deleterious(0) deleterious(0.786) NULL FMR1 2332 genome.wustl.edu 37 X 147030348 147030348 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002024.5 +1 reviewed p.V628A 1.000 252 0% 133 17.3% 55 92.7% - - - NULL FMR1NB 158521 genome.wustl.edu 37 X 147084741 147084741 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152578.2 +1 validated p.A100T 0.000 405 0% 322 14.3% 0 - benign(0.223) tolerated(0.16) neutral(0.081) NULL AFF2 2334 genome.wustl.edu 37 X 147733641 147733641 + Splice_Site SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000342251 +1 known e2+1 1.000 605 0% 371 18.1% 0 - - - - - AFF2 2334 genome.wustl.edu 37 X 148044367 148044367 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002025.3 +1 reviewed p.G938V 0.655 287 0% 125 11.2% 2 0% benign(0.155) tolerated(0.09) neutral(0.310) HMMPfam_AF-4 AFF2 2334 genome.wustl.edu 37 X 148068930 148068930 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002025.3 +1 reviewed p.V1219 0.988 334 0% 133 24.8% 2 0% - - - HMMPfam_AF-4 IDS 3423 genome.wustl.edu 37 X 148564676 148564676 + Silent SNP A A G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000202.5 -1 reviewed p.V418 0.011 147 0% 59 23.7% 27 0% - - - superfamily_Alkaline phosphatase-like MAGEA8 4107 genome.wustl.edu 37 X 149013422 149013422 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005364.4 +1 reviewed p.K126Q 0.016 203 0% 254 20.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_MAGE MAGEA8 4107 genome.wustl.edu 37 X 149013493 149013493 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005364.4 +1 reviewed p.H149Q 0.014 298 0.7% 322 22% 0 - benign(0.001) tolerated(0.19) neutral(0.050) HMMPfam_MAGE MAGEA8 4107 genome.wustl.edu 37 X 149013919 149013919 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005364.4 +1 reviewed p.E291D 0.002 128 0% 133 15.8% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL MTM1 4534 genome.wustl.edu 37 X 149826443 149826443 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000252.2 +1 reviewed p.E401D 0.005 406 0% 117 23.1% 4 0% benign(0) tolerated(0.39) neutral(0.016) superfamily_SSF52799 MTM1 4534 genome.wustl.edu 37 X 149828138 149828138 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000252.2 +1 reviewed p.R421Q 1.000 569 0% 183 22.4% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52799 MTMR1 8776 genome.wustl.edu 37 X 149901025 149901025 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003828.2 +1 reviewed p.W293C 1.000 184 0% 35 20% 6 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II MTMR1 8776 genome.wustl.edu 37 X 149905164 149905164 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003828.2 +1 reviewed p.R385H 0.946 313 0% 84 17.9% 19 78.9% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) superfamily_(Phosphotyrosine protein) phosphatases II MTMR1 8776 genome.wustl.edu 37 X 149919523 149919523 + Nonsense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000451863 +1 known p.R385* 0.000 39 0% 12 41.7% 2 100% - - - NULL HMGB3 3149 genome.wustl.edu 37 X 150156269 150156269 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005342.2 +1 validated p.S162L 0.997 436 0% 448 13.6% 102 0% benign(0.005) deleterious(0.03) neutral(0.364) HMMSmart_HMG,superfamily_HMG-box GPR50 9248 genome.wustl.edu 37 X 150348307 150348307 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004224.3 +1 reviewed p.L84 1.000 387 0% 396 21.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like GPR50 9248 genome.wustl.edu 37 X 150349723 150349723 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004224.3 +1 reviewed p.D556 0.030 86 0% 102 26.5% 0 - - - - NULL PASD1 139135 genome.wustl.edu 37 X 150840826 150840826 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173493.2 +1 reviewed p.R537W 0.000 387 0.3% 124 16.1% 0 - unknown(0) deleterious(0) - NULL PASD1 139135 genome.wustl.edu 37 X 150840894 150840894 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173493.2 +1 reviewed p.E559D 0.001 140 0% 66 18.2% 0 - unknown(0) deleterious(0.02) - NULL PASD1 139135 genome.wustl.edu 37 X 150842606 150842606 + Missense_Mutation SNP C C A rs182668710 by1000genomes TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_173493.2 +1 reviewed p.T708N 0.000 145 0% 89 15.7% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL PRRG3 79057 genome.wustl.edu 37 X 150869312 150869312 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_024082.3 +1 validated p.T168I 0.006 37 0% 50 32% 0 - benign(0.323) tolerated(0.4) neutral(0.117) NULL PRRG3 79057 genome.wustl.edu 37 X 150873776 150873776 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000448324 +1 known p.F60 0.000 165 0% 105 28.6% 0 - - - - NULL MAGEA4 4103 genome.wustl.edu 37 X 151092445 151092445 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011548.1 +1 reviewed p.E103 0.000 189 0% 87 11.5% 0 - - - - NULL MAGEA4 4103 genome.wustl.edu 37 X 151092622 151092622 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001011548.1 +1 reviewed p.I162 0.082 282 0% 142 28.9% 0 - - - - HMMPfam_MAGE GABRA3 2556 genome.wustl.edu 37 X 151358315 151358315 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000808.3 -1 reviewed p.V344I 1.000 142 0% 49 10.2% 0 - probably_damaging(0.974) tolerated(0.18) deleterious(0.472) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM GABRA3 2556 genome.wustl.edu 37 X 151514097 151514097 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000808.3 -1 reviewed p.R73H 1.000 307 0% 77 22.1% 0 - probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD GABRQ 55879 genome.wustl.edu 37 X 151821202 151821202 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018558.2 +1 reviewed p.L453I 0.000 80 0% 74 31.1% 0 - possibly_damaging(0.653) deleterious(0.01) deleterious(0.635) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM GABRQ 55879 genome.wustl.edu 37 X 151821314 151821314 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_018558.2 +1 reviewed p.G490D 0.000 84 0% 41 26.8% 0 - probably_damaging(0.994) tolerated(0.52) neutral(0.461) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM NSDHL 50814 genome.wustl.edu 37 X 152018953 152018953 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129765.1 +1 reviewed p.L85I 1.000 358 0.3% 154 24% 31 0% probably_damaging(0.966) tolerated(0.24) neutral(0.445) HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd NSDHL 50814 genome.wustl.edu 37 X 152037624 152037624 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001129765.1 +1 reviewed p.T362 0.013 89 0% 68 26.5% 56 89.2% - - - superfamily_NAD(P)-bd PNMA5 114824 genome.wustl.edu 37 X 152159137 152159137 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103150.1 -1 validated p.A336T 0.000 73 0% 64 12.5% 0 - benign(0.221) tolerated(0.56) neutral(0.028) NULL PNMA5 114824 genome.wustl.edu 37 X 152159242 152159242 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001103150.1 -1 validated p.A301S 0.000 32 0% 41 14.6% 0 - benign(0) tolerated(0.75) neutral(0.002) NULL PNMA3 29944 genome.wustl.edu 37 X 152225699 152225699 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_013364.4 +1 reviewed p.R96H 0.000 139 0% 197 20.3% 0 - probably_damaging(0.995) tolerated(0.1) deleterious(0.744) NULL MAGEA1 4100 genome.wustl.edu 37 X 152482582 152482582 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004988.4 -1 reviewed p.I143 0.053 352 0% 273 16.1% 0 - - - - HMMPfam_MAGE ZNF275 10838 genome.wustl.edu 37 X 152608917 152608917 + Missense_Mutation SNP A A C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000095634 +1 known p.I18L 0.001 421 0% 532 22.6% 0 - - - - NULL HAUS7 55559 genome.wustl.edu 37 X 152722674 152722674 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017518.6 -1 reviewed p.A133T 0.000 126 0% 119 25.2% 48 87.5% benign(0.184) tolerated(0.16) neutral(0.076) NULL ATP2B3 492 genome.wustl.edu 37 X 152815521 152815521 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001001344.2 +1 reviewed p.A534T 0.888 56 0% 61 31.1% 0 - benign(0.148) tolerated(0.16) neutral(0.072) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M FAM58A 92002 genome.wustl.edu 37 X 152853870 152853870 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000276345 -1 known p.V232M 1.000 527 0% 384 16.4% 25 44% benign(0.067) tolerated(0.59) neutral(0.009) HMMSmart_CYCLIN,superfamily_Cyclin_like FAM58A 92002 genome.wustl.edu 37 X 152857994 152857994 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_152274.3 -1 reviewed p.R209* 0.024 53 0% 53 32.1% 44 0% - - - NULL DUSP9 1852 genome.wustl.edu 37 X 152915045 152915045 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000433144 +1 known p.S215L 0.201 144 0% 136 16.9% 0 - - - - HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II PNCK 139728 genome.wustl.edu 37 X 152936435 152936435 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001039582.3 -1 validated p.R331 0.993 104 0% 139 20.9% 2 50% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PNCK 139728 genome.wustl.edu 37 X 152938717 152938717 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001135740.1 -1 validated p.R3 0.000 123 0% 112 22.3% 0 - - - - NULL SLC6A8 6535 genome.wustl.edu 37 X 152957459 152957459 + Missense_Mutation SNP T T C novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005629.3 +1 reviewed p.L225P 0.999 271 0% 364 12.4% 20 85% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_SNF PLXNB3 5365 genome.wustl.edu 37 X 153032394 153032394 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005393.2 +1 reviewed p.P38T 0.014 114 0% 158 22.2% 0 - benign(0.223) tolerated(0.25) neutral(0.059) NULL PLXNB3 5365 genome.wustl.edu 37 X 153035824 153035824 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005393.2 +1 reviewed p.F606 0.262 161 0% 170 23.5% 0 - - - - NULL PLXNB3 5365 genome.wustl.edu 37 X 153040370 153040370 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005393.2 +1 reviewed p.L1323M 0.999 27 0% 30 26.7% 0 - unknown(0) - - NULL SSR4 6748 genome.wustl.edu 37 X 153061903 153061903 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_006280.1 +1 reviewed p.E28* 1.000 192 0% 233 27.9% 956 0% - - - HMMPfam_TRAP-delta PDZD4 57595 genome.wustl.edu 37 X 153070251 153070251 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_032512.2 -1 provisional p.N289 0.989 37 0% 52 21.2% 0 - - - - NULL L1CAM 3897 genome.wustl.edu 37 X 153130077 153130077 + Nonsense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000425.3 -1 reviewed p.C1043* 0.738 189 0% 168 11.3% 1 0% - - - superfamily_Fibronectin type III ENSG00000196987 0 genome.wustl.edu 37 X 153153970 153153970 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000357566 +1 known p.D137E 0.000 115 0% 152 24.3% 0 - unknown(0) - - NULL HCFC1 3054 genome.wustl.edu 37 X 153220144 153220144 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005334.2 -1 reviewed p.A1236S 0.102 64 0% 26 42.3% 21 4.7% benign(0) tolerated(0.56) neutral(0.006) NULL HCFC1 3054 genome.wustl.edu 37 X 153220617 153220617 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_005334.2 -1 reviewed p.P1078L 0.998 252 0% 191 24.6% 14 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TMEM187 8269 genome.wustl.edu 37 X 153247540 153247540 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_003492.2 +1 reviewed p.F9 0.000 35 0% 43 39.5% 19 5.2% - - - NULL MECP2 4204 genome.wustl.edu 37 X 153296852 153296852 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001110792.1 -1 reviewed p.E155K 1.000 235 0% 262 20.2% 34 0% benign(0.253) tolerated(0.09) neutral(0.323) HMMPfam_MBD,HMMSmart_MBD,superfamily_DNA-binding_integrase-type OPN1LW 5956 genome.wustl.edu 37 X 153416321 153416321 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_020061.4 +1 reviewed p.E102D 1.000 170 0% 177 27.7% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_7tm_1,superfamily_SSF81321 OPN1MW2 728458 genome.wustl.edu 37 X 153490491 153490491 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001048181.2 +1 reviewed p.A76V 0.968 151 0% 141 13.5% 0 - benign(0) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 TKTL1 8277 genome.wustl.edu 37 X 153555945 153555945 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_012253.3 +1 validated p.R470 0.290 332 0% 251 22.3% 0 - - - - HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like FLNA 2316 genome.wustl.edu 37 X 153581291 153581291 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001110556.1 -1 reviewed p.G2076 0.979 132 0% 142 25.4% 161 0% - - - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin FLNA 2316 genome.wustl.edu 37 X 153581376 153581376 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001110556.1 -1 reviewed p.R2073 0.772 149 0% 135 18.5% 183 0% - - - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin EMD 2010 genome.wustl.edu 37 X 153608311 153608311 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000117.2 +1 reviewed p.S66L 0.149 227 0% 243 21% 103 0% possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL EMD 2010 genome.wustl.edu 37 X 153609522 153609522 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000117.2 +1 reviewed p.H244N 0.519 230 0% 224 25.9% 148 77.7% benign(0.006) deleterious(0.02) neutral(0.383) NULL DNASE1L1 1774 genome.wustl.edu 37 X 153633335 153633335 + Splice_Site SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001009932.1 -1 reviewed e2+1 1.000 91 0% 113 19.5% 0 - - - - - FAM50A 9130 genome.wustl.edu 37 X 153678255 153678255 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004699.2 +1 reviewed p.V269I 1.000 83 0% 104 26.9% 292 0% benign(0.335) tolerated(0.11) neutral(0.377) HMMPfam_XAP5 FAM50A 9130 genome.wustl.edu 37 X 153678605 153678605 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_004699.2 +1 reviewed p.H317Y 1.000 71 0% 99 21.2% 273 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_XAP5 PLXNA3 55558 genome.wustl.edu 37 X 153689079 153689079 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017514.3 +1 reviewed p.L186I 1.000 23 0% 33 24.2% 3 0% possibly_damaging(0.539) deleterious(0) deleterious(0.627) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema PLXNA3 55558 genome.wustl.edu 37 X 153694178 153694178 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017514.3 +1 reviewed p.P840 0.087 35 0% 51 29.4% 6 0% - - - HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set PLXNA3 55558 genome.wustl.edu 37 X 153695444 153695444 + Missense_Mutation SNP T T G novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017514.3 +1 reviewed p.V1051G 0.998 41 0% 54 13% 10 40% possibly_damaging(0.949) deleterious(0) deleterious(0.838) HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set PLXNA3 55558 genome.wustl.edu 37 X 153695712 153695712 + Silent SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017514.3 +1 reviewed p.S1113 1.000 22 0% 29 17.2% 7 0% - - - HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set PLXNA3 55558 genome.wustl.edu 37 X 153698802 153698802 + Silent SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_017514.3 +1 reviewed p.F1668 0.984 92 0% 89 13.5% 23 4.3% - - - superfamily_Rho_GAP,HMMPfam_Plexin_cytopl UBL4A 8266 genome.wustl.edu 37 X 153714218 153714218 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_014235.3 -1 provisional p.Q85H 0.000 128 0% 180 23.3% 19 0% benign(0) tolerated(0.13) neutral(0.253) NULL GAB3 139716 genome.wustl.edu 37 X 153940975 153940975 + Silent SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081573.1 -1 reviewed p.L200 0.099 114 0% 49 10.2% 0 - - - - NULL GAB3 139716 genome.wustl.edu 37 X 153941671 153941671 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081573.1 -1 reviewed p.P136H 0.924 204 0% 103 22.3% 0 - probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL GAB3 139716 genome.wustl.edu 37 X 153944311 153944311 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_001081573.1 -1 reviewed p.E122D 0.253 73 0% 71 26.8% 1 0% benign(0.008) tolerated(0.26) neutral(0.034) NULL MPP1 4354 genome.wustl.edu 37 X 154009541 154009541 + Missense_Mutation SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002436.3 -1 reviewed p.F399L 1.000 366 0% 320 21.6% 29 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases MPP1 4354 genome.wustl.edu 37 X 154011765 154011765 + Missense_Mutation SNP G G A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_002436.3 -1 reviewed p.R295C 1.000 145 0% 130 20% 14 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases ENSG00000157576 0 genome.wustl.edu 37 X 154045472 154045472 + Nonsense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 ENST00000378969 -1 known p.E69* 1.000 46 0% 99 14.1% 0 - - - - HMMPfam_HMG14_17,HMMSmart_SM00527 F8 2157 genome.wustl.edu 37 X 154134840 154134840 + Missense_Mutation SNP C C A novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000132.3 -1 reviewed p.S1743I 0.049 271 0.4% 135 20% 0 - probably_damaging(0.976) tolerated(0.22) neutral(0.460) superfamily_Cupredoxins F8 2157 genome.wustl.edu 37 X 154182234 154182234 + Silent SNP G G T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000132.3 -1 reviewed p.R612 0.991 359 0% 197 17.8% 0 - - - - superfamily_Cupredoxins F8 2157 genome.wustl.edu 37 X 154250778 154250778 + Missense_Mutation SNP C C T novel TCGA-AP-A059-01A-21D-A122-09 TCGA-AP-A059-10A-01D-A122-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f7462212-0185-434f-8774-86b41d757dd9 ed777919-93d9-483a-a5e8-364f89f19353 NM_000132.3 -1 reviewed p.C17Y 0.056 472 0% 433 22.4% 0 - possibly_damaging(0.46) deleterious(0) deleterious(0.596) superfamily_Cupredoxins