Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
ZNF645	0	genome.wustl.edu	37	X	22291397	22291397	+	Missense_Mutation	SNP	C	C	T			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	X	22291397	22291397	C	T	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	1	known	missense	c.289	p.R97C	0.051	pfscan_Znf_RING	pfscan_Znf_RING,pfscan_Znf_C2H2	0	no_errors	0	0	0	29	0	0	55	5	8.33	184	0	0.00	164	12	6.78
VWA5B1	0	genome.wustl.edu	37	1	20669080	20669080	+	Missense_Mutation	SNP	C	C	G			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	1	20669080	20669080	C	G	SNP	VWA5B1	ENST00000289815	human	ensembl	74_37	1	known	missense	c.2289	p.D763E	0.179	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	0	no_errors	0	0	0	51	0	0	53	4	7.02	93	0	0.00	87	10	10.10
MROH9	0	genome.wustl.edu	37	1	170985470	170985470	+	Missense_Mutation	SNP	T	T	C			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	1	170985470	170985470	T	C	SNP	MROH9	ENST00000367759	human	ensembl	74_37	1	known	missense	c.1901	p.M634T	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	0	no_errors	0	0	0	43	0	0	45	6	11.76	217	0	0.00	188	13	6.47
TPR	0	genome.wustl.edu	37	1	186313052	186313052	+	Silent	SNP	A	A	T			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	1	186313052	186313052	A	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	silent	c.3588	p.I1196	0.507	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	0	no_errors	0	0	0	67	0	0	78	10	11.24	232	0	0.00	267	20	6.97
NR1D2	0	genome.wustl.edu	37	3	24018736	24018736	+	Silent	SNP	C	C	A			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	3	24018736	24018736	C	A	SNP	NR1D2	ENST00000312521	human	ensembl	74_37	1	known	silent	c.1566	p.V522	1	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	0	no_errors	0	0	0	72	0	0	114	11	8.8	227	1	0.44	221	18	7.53
BFSP2	0	genome.wustl.edu	37	3	133191216	133191216	+	Missense_Mutation	SNP	G	G	A			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	3	133191216	133191216	G	A	SNP	BFSP2	ENST00000302334	human	ensembl	74_37	1	known	missense	c.1051	p.D351N	1	pfam_IF	pfam_IF,prints_Keratin_I	0	no_errors	0	0	0	47	0	0	61	5	7.58	89	0	0.00	76	10	11.49
MME	0	genome.wustl.edu	37	3	154832820	154832820	+	Silent	SNP	G	G	A			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	3	154832820	154832820	G	A	SNP	MME	ENST00000360490	human	ensembl	74_37	1	known	silent	c.234	p.E78	0.911	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	0	no_errors	rs201425951	G->A,C	0	48	0	0	75	11	12.79	175	0	0.00	133	9	6.34
LPAL2	0	genome.wustl.edu	37	6	160888623	160888623	+	RNA	SNP	C	C	G			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	6	160888623	160888623	C	G	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	34	0	0	69	9	11.54	27	0	0.00	26	4	12.90
STAT6	0	genome.wustl.edu	37	12	57499106	57499106	+	Missense_Mutation	SNP	T	T	G			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	12	57499106	57499106	T	G	SNP	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	missense	c.829	p.K277Q	1	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	0	no_errors	0	0	0	44	0	0	65	10	13.33	86	0	0.00	70	7	9.09
NF1	0	genome.wustl.edu	37	17	29683580	29683580	+	Missense_Mutation	SNP	C	C	G			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	17	29683580	29683580	C	G	SNP	NF1	ENST00000358273	human	ensembl	74_37	1	known	missense	c.7718	p.A2573G	1	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	0	no_errors	0	0	0	59	0	0	79	6	7.06	268	1	0.37	241	26	9.74
RPL23A	0	genome.wustl.edu	37	17	27049790	27049790	+	Missense_Mutation	SNP	A	A	G			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	17	27049790	27049790	A	G	SNP	RPL23A	ENST00000422514	human	ensembl	74_37	1	known	missense	c.259	p.M87V	1	pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23	pfam_Ribosomal_L23/L25_N,pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23	0	no_errors	0	0	0	46	0	0	50	4	7.41	0	0	0.00	0	0	0.00
ENSG00000216154	0	genome.wustl.edu	37	4	123928724	123928749	+	RNA	DEL	TGTGTGTGTGTGTGTGTGTGTGTGTG	TGTGTGTGTGTGTGTGTGTGTGTGTG	-			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	TGTGTGTGTGTGTGTGTGTGTGTGTG	TGTGTGTGTGTGTGTGTGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	4	123928724	123928749	TGTGTGTGTGTGTGTGTGTGTGTGTG	0	DEL	ENSG00000216154	ENST00000401335	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.008:0.004:0.004:0.003:0.003:0.003:0.005:0.006:0.007:0.007:0.007:0.006:0.005:0.003:0.004:0.003:0.005:0.006:0.012:0.017:0.021:0.026:0.029:0.032:0.035:0.037	0	0	0	no_errors	rs148702654	ATGTGTGTGTGTGTGTGTGTGTGTGTG->A	0	18	1	5.26	29	5	14.71	0	0	0.00	0	0	0.00
MAML2	0	genome.wustl.edu	37	11	95825372	95825374	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-ZT-A8OM-01A-11D-A428-09	TCGA-ZT-A8OM-10A-01D-A42B-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0679e9b5-d798-4515-b290-39f2800eb027	0fe4d4c7-74a4-4caa-81c4-434984fd134a	11	95825372	95825374	TGT	0	DEL	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	in_frame_del	c.1823_1821	p.Q611in_frame_del	0.003:0.003:0.003	NULL	pfam_Neuroggenic_mastermind-like_N	0	no_errors	0	0	0	35	1	2.78	27	5	15.62	2	0	0.00	8	0	0.00