Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
COLGALT2	0	genome.wustl.edu	37	1	183913443	183913443	+	Silent	SNP	C	C	T			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	1	183913443	183913443	C	T	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	silent	c.1284	p.E428	0.95	pfam_Glyco_trans_25	pfam_Glyco_trans_25	0	no_errors	rs200107460	C->T	0	36	0	0	36	10	21.74	192	0	0.00	185	35	15.91
PIK3C2B	0	genome.wustl.edu	37	1	204410672	204410672	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	1	204410672	204410672	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.3176	p.S1059F	1	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	0	no_errors	0	0	0	28	0	0	30	8	21.05	132	0	0.00	152	31	16.76
KIDINS220	0	genome.wustl.edu	37	2	8871364	8871364	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	2	8871364	8871364	T	C	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.4802	p.N1601S	1	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	29	0	0	17	11	39.29	137	0	0.00	163	32	16.41
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	315	0	0	331	61	15.56	93	0	0.00	97	29	23.02
PCLO	0	genome.wustl.edu	37	7	82791768	82791768	+	Missense_Mutation	SNP	C	C	G			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	7	82791768	82791768	C	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.141	p.Q47H	1	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	0	no_errors	0	0	0	49	0	0	41	11	21.15	46	0	0.00	38	8	17.39
MKI67	0	genome.wustl.edu	37	10	129905997	129905997	+	Silent	SNP	A	A	G			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	10	129905997	129905997	A	G	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.4107	p.T1369	0	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	0	no_errors	0	0	0	46	0	0	36	6	14.29	155	0	0.00	182	21	10.34
DAGLA	0	genome.wustl.edu	37	11	61488195	61488195	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	11	61488195	61488195	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	1	known	missense	c.140	p.P47L	1	NULL	pfam_Lipase_3	0	no_errors	0	0	0	24	0	0	19	4	17.39	102	0	0.00	102	21	17.07
DYRK2	0	genome.wustl.edu	37	12	68051696	68051696	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	12	68051696	68051696	G	T	SNP	DYRK2	ENST00000344096	human	ensembl	74_37	1	known	missense	c.1009	p.D337Y	1	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	41	0	0	26	5	15.62	193	0	0.00	158	40	20.20
FZD10	0	genome.wustl.edu	37	12	130649201	130649201	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	12	130649201	130649201	G	A	SNP	FZD10	ENST00000229030	human	ensembl	74_37	1	known	missense	c.1714	p.E572K	1	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	0	no_errors	0	0	0	13	0	0	21	7	25	99	0	0.00	130	15	10.34
DYNC1H1	0	genome.wustl.edu	37	14	102505407	102505407	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	14	102505407	102505407	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	1	known	missense	c.11276	p.R3759H	1	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	0	no_errors	0	0	0	24	0	0	33	5	13.16	147	2	1.34	183	36	16.44
GRIN2A	0	genome.wustl.edu	37	16	9857896	9857896	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	16	9857896	9857896	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.3505	p.R1169W	1	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	0	no_errors	rs369878342	G->A	0	48	0	0	51	4	7.27	188	0	0.00	204	15	6.82
ZNF776	0	genome.wustl.edu	37	19	58265229	58265229	+	Missense_Mutation	SNP	T	T	G			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	19	58265229	58265229	T	G	SNP	ZNF776	ENST00000317178	human	ensembl	74_37	1	known	missense	c.731	p.F244C	0.017	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	58	0	0	53	5	8.62	187	1	0.53	200	21	9.50
KDM2B	0	genome.wustl.edu	37	12	121880103	121880103	+	Frame_Shift_Del	DEL	G	G	-			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	12	121880103	121880103	G	0	DEL	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	frame_shift_del	c.3141	p.I1048fs	1	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	0	no_errors	0	0	0	26	0	0	36	3	7.69	17	0	0.00	17	2	10.53
ZNF649	0	genome.wustl.edu	37	19	52393919	52393920	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-ZB-A96M-01A-11D-A428-09	TCGA-ZB-A96M-10A-01D-A42B-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6c266472-a39e-41a5-b4e7-8ff54ffc2ffa	3bcd0489-0be5-459f-b0f6-c1d1431ff6b9	19	52393919	52393920	CA	0	DEL	ZNF649	ENST00000354957	human	ensembl	74_37	-1	known	frame_shift_del	c.1470_1469	p.V490fs	0.921:0.904	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	36	0	0	41	10	19.61	116	1	0.85	137	24	14.91