Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-CO1	0	genome.wustl.edu	37	MT	5947	5947	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	MT	5947	5947	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	1	known	missense	c.44	p.I15T	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	0	no_errors	0	0	0	12	0	0	31	29	48.33	0	0	0.00	1	6	85.71
MXRA5	0	genome.wustl.edu	37	X	3235593	3235593	+	Silent	SNP	C	C	G			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	X	3235593	3235593	C	G	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.6129	p.A2043	0.042	smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	0	no_errors	0	0	0	75	0	0	31	23	42.59	21	0	0.00	18	16	47.06
PHEX	0	genome.wustl.edu	37	X	22129592	22129592	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	X	22129592	22129592	G	A	SNP	PHEX	ENST00000379374	human	ensembl	74_37	1	known	missense	c.1087	p.A363T	1	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	0	no_errors	0	0	0	83	0	0	45	24	34.78	246	2	0.81	127	72	36.00
RPGR	0	genome.wustl.edu	37	X	38146390	38146390	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	X	38146390	38146390	T	C	SNP	RPGR	ENST00000378505	human	ensembl	74_37	-1	known	missense	c.1862	p.E621G	0.059	NULL	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	0	no_errors	0	0	0	20	0	0	11	7	38.89	244	0	0.00	113	90	44.33
GPR173	0	genome.wustl.edu	37	X	53106206	53106206	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	X	53106206	53106206	A	G	SNP	GPR173	ENST00000332582	human	ensembl	74_37	1	known	missense	c.403	p.M135V	1	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	16	0	0	5	10	66.67	28	0	0.00	19	7	26.92
TMEM185A	0	genome.wustl.edu	37	X	148692970	148692970	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	X	148692970	148692970	C	T	SNP	TMEM185A	ENST00000316916	human	ensembl	74_37	-1	known	missense	c.215	p.R72Q	1	pfam_TM_Fragile-X-F-assoc	pfam_TM_Fragile-X-F-assoc	0	no_errors	0	0	0	168	0	0	84	55	39.57	239	0	0.00	120	89	42.58
NECAP2	0	genome.wustl.edu	37	1	16785395	16785395	+	Silent	SNP	G	G	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	1	16785395	16785395	G	A	SNP	NECAP2	ENST00000443980	human	ensembl	74_37	1	known	silent	c.726	p.T242	0	NULL	pfam_NECAP-1	0	no_errors	0	0	0	64	0	0	43	7	14	136	0	0.00	128	9	6.52
PIN1P1	0	genome.wustl.edu	37	1	70385486	70385486	+	RNA	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	1	70385486	70385486	C	T	SNP	PIN1P1	ENST00000412108	human	ensembl	74_37	1	known	rna	NULL	NULL	0.971	0	0	0	no_errors	0	0	0	53	0	0	29	11	27.5	88	0	0.00	37	19	33.93
CCDC108	0	genome.wustl.edu	37	2	219870259	219870259	+	Silent	SNP	T	T	G			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	2	219870259	219870259	T	G	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.4948	p.R1650	0	NULL	superfamily_PapD-like,pfscan_MSP_dom	0	no_errors	0	0	0	72	0	0	49	25	33.78	147	0	0.00	76	46	37.40
PTPRN	0	genome.wustl.edu	37	2	220164896	220164896	+	Missense_Mutation	SNP	G	G	C			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	2	220164896	220164896	G	C	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	missense	c.1247	p.P416R	0.732	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	0	no_errors	0	0	0	20	0	0	9	11	55	83	0	0.00	55	30	35.29
IQCA1	0	genome.wustl.edu	37	2	237246856	237246856	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	2	237246856	237246856	G	T	SNP	IQCA1	ENST00000409907	human	ensembl	74_37	-1	known	missense	c.2126	p.S709Y	1	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	0	no_errors	0	0	0	44	0	0	26	16	38.1	242	0	0.00	109	59	35.12
HES1	0	genome.wustl.edu	37	3	193855974	193855974	+	Missense_Mutation	SNP	C	C	G			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	3	193855974	193855974	C	G	SNP	HES1	ENST00000232424	human	ensembl	74_37	1	known	missense	c.795	p.S265R	1	NULL	pfam_Orange,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	0	no_errors	0	0	0	55	0	0	27	20	42.55	56	0	0.00	59	39	39.80
ZSCAN16	0	genome.wustl.edu	37	6	28097443	28097443	+	Silent	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	6	28097443	28097443	C	T	SNP	ZSCAN16	ENST00000340487	human	ensembl	74_37	1	known	silent	c.762	p.H254	0.839	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	0	no_errors	0	0	0	73	0	0	28	32	53.33	245	0	0.00	130	70	35.00
FILIP1	0	genome.wustl.edu	37	6	76022744	76022744	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	6	76022744	76022744	A	G	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	missense	c.2804	p.F935S	0.998	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	0	no_errors	0	0	0	42	0	0	17	11	39.29	219	0	0.00	138	80	36.70
LFNG	0	genome.wustl.edu	37	7	2565349	2565349	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	7	2565349	2565349	G	A	SNP	LFNG	ENST00000222725	human	ensembl	74_37	1	known	missense	c.766	p.G256S	1	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	0	no_errors	0	0	0	38	0	0	37	7	15.91	97	0	0.00	71	3	4.05
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	415	1	0.24	205	136	39.88	143	0	0.00	53	39	41.94
MAMDC4	0	genome.wustl.edu	37	9	139750227	139750227	+	Silent	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	9	139750227	139750227	C	T	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	1	known	silent	c.1515	p.D505	0.908	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	0	no_errors	0	0	0	17	0	0	15	6	28.57	33	0	0.00	38	16	29.63
SLC22A6	0	genome.wustl.edu	37	11	62744854	62744854	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	11	62744854	62744854	G	T	SNP	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	missense	c.1367	p.T456K	0.96	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	0	no_errors	0	0	0	11	0	0	4	6	60	67	0	0.00	36	18	33.33
OR6M1	0	genome.wustl.edu	37	11	123676667	123676667	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	11	123676667	123676667	T	C	SNP	OR6M1	ENST00000309154	human	ensembl	74_37	-1	known	missense	c.391	p.T131A	0.03	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	51	0	0	27	15	35.71	104	0	0.00	49	41	45.56
BBS10	0	genome.wustl.edu	37	12	76741446	76741446	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	12	76741446	76741446	G	A	SNP	BBS10	ENST00000393262	human	ensembl	74_37	-1	known	missense	c.319	p.P107S	0.051	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	0	no_errors	0	0	0	27	0	0	11	5	31.25	188	0	0.00	86	48	35.82
SACS	0	genome.wustl.edu	37	13	23913409	23913409	+	Missense_Mutation	SNP	C	C	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	13	23913409	23913409	C	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.4606	p.V1536L	0.989	superfamily_HATPase_ATP-bd	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	0	no_errors	0	0	0	41	0	0	20	15	42.86	277	0	0.00	148	85	36.48
THAP11	0	genome.wustl.edu	37	16	67876808	67876808	+	Silent	SNP	G	G	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	16	67876808	67876808	G	A	SNP	THAP11	ENST00000303596	human	ensembl	74_37	1	known	silent	c.351	p.Q117	0.946	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	0	no_errors	0	0	0	9	0	0	17	4	19.05	11	0	0.00	11	2	15.38
SPIRE2	0	genome.wustl.edu	37	16	89936636	89936636	+	Nonsense_Mutation	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	16	89936636	89936636	C	T	SNP	SPIRE2	ENST00000378247	human	ensembl	74_37	1	known	nonsense	c.2101	p.Q701*	0.997	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	0	no_errors	0	0	0	39	0	0	22	19	46.34	185	0	0.00	90	61	40.40
IGFLR1	0	genome.wustl.edu	37	19	36230713	36230713	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	19	36230713	36230713	G	T	SNP	IGFLR1	ENST00000246532	human	ensembl	74_37	-1	known	missense	c.619	p.P207T	0	NULL	superfamily_DEATH-like_dom	0	no_errors	0	0	0	23	0	0	12	15	55.56	84	0	0.00	66	63	48.84
PTH2	0	genome.wustl.edu	37	19	49926534	49926534	+	Silent	SNP	C	C	A			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	19	49926534	49926534	C	A	SNP	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	silent	c.63	p.L21	0.057	NULL	NULL	0	no_errors	0	0	0	80	0	0	64	14	17.95	29	0	0.00	33	6	15.38
EBF4	0	genome.wustl.edu	37	20	2730141	2730141	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	20	2730141	2730141	C	T	SNP	EBF4	ENST00000380648	human	ensembl	74_37	1	known	missense	c.722	p.A241V	1	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	0	no_errors	0	0	0	39	0	0	22	20	47.62	45	0	0.00	22	21	48.84
ATP9A	0	genome.wustl.edu	37	20	50221408	50221408	+	Silent	SNP	C	C	G			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	20	50221408	50221408	C	G	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	silent	c.2955	p.L985	1	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	0	no_errors	0	0	0	41	0	0	26	14	35	72	0	0.00	43	20	31.75
CEP290	0	genome.wustl.edu	37	12	88512304	88512305	+	Frame_Shift_Ins	INS	-	-	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	12	88512304	88512305	0	T	INS	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_ins	c.1673_1672	p.I558fs	1.000:0.983	NULL	NULL	0	no_errors	0	0	0	83	0	0	69	6	8	174	2	1.14	110	5	4.35
BEGAIN	0	genome.wustl.edu	37	14	101005271	101005273	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	CCT	CCT	CCT	-	CCT	CCT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	14	101005271	101005273	CCT	0	DEL	BEGAIN	ENST00000355173	human	ensembl	74_37	-1	known	in_frame_del	c.817_815	p.E272in_frame_del	0.781:0.856:0.982	NULL	superfamily_Prefoldin	0	no_errors	0	0	0	12	0	0	10	2	16.67	35	0	0.00	29	2	6.45
PTH2	0	genome.wustl.edu	37	19	49926530	49926531	+	In_Frame_Ins	INS	-	-	CAGAAG			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	-	-	-	CAGAAG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	19	49926530	49926531	0	CAGAAG	INS	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	in_frame_ins	c.67_66	p.22in_frame_insLL	0.016:0.016	NULL	NULL	0	no_errors	0	0	0	77	0	0	60	16	21.05	29	0	0.00	34	6	15.00
WASH6P	0	genome.wustl.edu	37	X	155252167	155252167	+	RNA	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	X	155252167	155252167	C	T	SNP	WASH6P	ENST00000340131	human	ensembl	74_37	1	known	rna	NULL	NULL	0.96	0	0	0	no_errors	0	0	0	67	1	1.45	60	14	18.92	0	0	0.00	0	0	0.00
NPIPA2	0	genome.wustl.edu	37	16	14859247	14859247	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	16	14859247	14859247	C	T	SNP	NPIPA2	ENST00000529166	human	ensembl	74_37	1	novel	missense	c.1087	p.R363W	0.065	NULL	NULL	0	no_errors	0	0	0	50	1	1.96	38	7	15.56	0	0	0.00	0	0	0.00
DSC3	0	genome.wustl.edu	37	18	28622608	28622608	+	Silent	SNP	G	G	T			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	18	28622608	28622608	G	T	SNP	DSC3	ENST00000360428	human	ensembl	74_37	-1	known	silent	c.19	p.R7	0.02	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	0	no_errors	0	0	0	23	0	0	24	4	14.29	8	0	0.00	9	0	0.00
BHLHE22	0	genome.wustl.edu	37	8	65493948	65493950	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	8	65493948	65493950	GGC	0	DEL	BHLHE22	ENST00000321870	human	ensembl	74_37	1	known	in_frame_del	c.601_603	p.G204in_frame_del	0.956:0.962:0.959	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	0	no_errors	0	0	0	12	0	0	4	2	33.33	11	0	0.00	10	0	0.00
DHX33	0	genome.wustl.edu	37	17	5372037	5372039	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-ZB-A96C-01A-11D-A428-09	TCGA-ZB-A96C-10A-01D-A42B-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12bc7f4b-7163-4b87-93e5-69c4dc232c36	a391c3fe-3d7d-4a3d-bd29-b4ef22e6b929	17	5372037	5372039	CCT	0	DEL	DHX33	ENST00000225296	human	ensembl	74_37	-1	known	in_frame_del	c.143_141	p.G48in_frame_del	1.000:1.000:1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	0	no_errors	0	0	0	31	0	0	19	2	9.52	4	0	0.00	2	0	0.00