Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
SRPK3	0	genome.wustl.edu	37	X	153050281	153050281	+	Missense_Mutation	SNP	C	C	A			TCGA-ZB-A96B-01A-11D-A428-09	TCGA-ZB-A96B-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c66b24b6-daa2-4b03-8f06-29d8f6f8192d	469f9bd0-3ee3-489f-8c3f-5c6da32e36a5	X	153050281	153050281	C	A	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	1	known	missense	c.1325	p.P442H	1	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	24	0	0	18	4	18.18	17	0	0.00	6	0	0.00
NKD2	0	genome.wustl.edu	37	5	1038422	1038422	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96B-01A-11D-A428-09	TCGA-ZB-A96B-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c66b24b6-daa2-4b03-8f06-29d8f6f8192d	469f9bd0-3ee3-489f-8c3f-5c6da32e36a5	5	1038422	1038422	G	A	SNP	NKD2	ENST00000382730	human	ensembl	74_37	1	known	missense	c.208	p.A70T	0.971	NULL	NULL	0	no_errors	0	0	0	10	0	0	14	4	22.22	31	0	0.00	10	0	0.00
NKX2-5	0	genome.wustl.edu	37	5	172659906	172659908	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-ZB-A96B-01A-11D-A428-09	TCGA-ZB-A96B-10A-01D-A42B-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c66b24b6-daa2-4b03-8f06-29d8f6f8192d	469f9bd0-3ee3-489f-8c3f-5c6da32e36a5	5	172659906	172659908	GGC	0	DEL	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	in_frame_del	c.641_639	p.P214in_frame_del	0.987:1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	0	no_errors	rs376340952	AGGC->A	0	23	0	0	25	2	7.41	12	0	0.00	9	0	0.00