Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val ITM2A 0 genome.wustl.edu 37 X 78618445 78618445 + Missense_Mutation SNP A A C TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad X 78618445 78618445 A C SNP ITM2A ENST00000373298 human ensembl 74_37 -1 known missense c.435 p.F145L 0.998 pfam_BRICHOS_dom,pfscan_BRICHOS_dom pfam_BRICHOS_dom,pfscan_BRICHOS_dom 0 no_errors 0 0 0 34 0 0 31 10 24.39 113 0 0.00 92 18 16.36 SCNN1D 0 genome.wustl.edu 37 1 1222276 1222276 + Missense_Mutation SNP C C T TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 1 1222276 1222276 C T SNP SCNN1D ENST00000379116 human ensembl 74_37 1 known missense c.1040 p.P347L 0 pfam_Na+channel_ASC,tigrfam_EnaC pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC 0 no_errors rs543238689 C->T 0.9998,0.0001997 43 0 0 28 9 24.32 132 0 0.00 96 14 12.73 SENP6 0 genome.wustl.edu 37 6 76343306 76343306 + Silent SNP C C A TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 6 76343306 76343306 C A SNP SENP6 ENST00000370014 human ensembl 74_37 1 known silent c.217 p.R73 0.996 NULL pfam_Peptidase_C48,pfscan_Peptidase_C48 0 no_errors 0 0 0 118 0 0 79 6 7.06 276 1 0.36 236 27 10.27 GTF2I 0 genome.wustl.edu 37 7 74146970 74146970 + Missense_Mutation SNP T T A TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 7 74146970 74146970 T A SNP GTF2I ENST00000324896 human ensembl 74_37 1 known missense c.1271 p.L424H 1 pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I 0 no_errors 0 0 0 390 0 0 272 31 10.23 164 0 0.00 129 19 12.84 SLC26A10 0 genome.wustl.edu 37 12 58019923 58019923 + RNA SNP C C T TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 12 58019923 58019923 C T SNP SLC26A10 ENST00000483647 human ensembl 74_37 1 known rna NULL NULL 0 0 0 0 no_errors 0 0 0 37 0 0 25 4 13.79 290 0 0.00 186 32 14.68 SETD1A 0 genome.wustl.edu 37 16 30972682 30972682 + Missense_Mutation SNP G G T TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 16 30972682 30972682 G T SNP SETD1A ENST00000262519 human ensembl 74_37 1 known missense c.341 p.C114F 1 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom 0 no_errors 0 0 0 45 0 0 41 4 8.89 176 1 0.56 154 12 7.23 ZNF177 0 genome.wustl.edu 37 19 9489731 9489731 + Missense_Mutation SNP A A G TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 19 9489731 9489731 A G SNP ZNF177 ENST00000434737 human ensembl 74_37 1 known missense c.127 p.M43V 1 pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box 0 no_errors 0 0 0 64 0 0 41 13 24.07 296 0 0.00 219 24 9.88 ZNF222 0 genome.wustl.edu 37 19 44529568 44529568 + RNA SNP C C G TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 19 44529568 44529568 C G SNP ZNF222 ENST00000590160 human ensembl 74_37 1 known rna NULL NULL 0 0 0 0 no_errors 0 0 0 36 0 0 39 4 9.3 175 0 0.00 126 13 9.35 SCO2 0 genome.wustl.edu 37 22 50962528 50962528 + Missense_Mutation SNP G G A TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 22 50962528 50962528 G A SNP SCO2 ENST00000252785 human ensembl 74_37 -1 known missense c.313 p.H105Y 0.903 pfam_SCO1/SenC,superfamily_Thioredoxin-like_fold,pirsf_Synth_of_cyt-c-oxidase_Sco1/2 pfam_SCO1/SenC,superfamily_Thioredoxin-like_fold,pirsf_Synth_of_cyt-c-oxidase_Sco1/2 0 no_errors 0 0 0 28 0 0 14 2 12.5 98 0 0.00 80 10 11.11 TYMP 0 genome.wustl.edu 37 22 50968040 50968040 + Silent SNP G G C TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 22 50968040 50968040 G C SNP TYMP ENST00000252029 human ensembl 74_37 -1 known silent c.99 p.P33 0 superfamily_Glycosyl_Trfase_fam3_N_dom,pirsf_Pyrmidine_PPase pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk 0 no_errors 0 0 0 93 0 0 45 4 8.16 91 1 1.09 71 8 10.00 ITM2A 0 genome.wustl.edu 37 X 78618440 78618440 + Frame_Shift_Del DEL T T - TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 T T T - T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad X 78618440 78618440 T 0 DEL ITM2A ENST00000373298 human ensembl 74_37 -1 known frame_shift_del c.440 p.K147fs 1 pfam_BRICHOS_dom,pfscan_BRICHOS_dom pfam_BRICHOS_dom,pfscan_BRICHOS_dom 0 no_errors rs36103089 CT->C 0 33 0 0 33 9 21.43 109 0 0.00 90 18 16.67 TRAK1 0 genome.wustl.edu 37 3 42251577 42251578 + In_Frame_Ins INS - - GGAGGA TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 - - - GGAGGA - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 3 42251577 42251578 0 GGAGGA INS TRAK1 ENST00000341421 human ensembl 74_37 1 known in_frame_ins c.1889_1890 p.634in_frame_insEE 0.010:0.044 NULL pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom 0 no_errors 0 0 0 14 0 0 12 2 14.29 6 0 0.00 3 2 40.00 MUC12 0 genome.wustl.edu 37 7 100641735 100641735 + Missense_Mutation SNP A A G TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 7 100641735 100641735 A G SNP MUC12 ENST00000536621 human ensembl 74_37 1 known missense c.7891 p.T2631A 0.006 NULL pfam_SEA_dom 0 no_errors 0 0 0 9 0 0 7 5 41.67 6 0 0.00 3 0 0.00 ZNF532 0 genome.wustl.edu 37 18 56651490 56651490 + Missense_Mutation SNP C C T TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 18 56651490 56651490 C T SNP ZNF532 ENST00000336078 human ensembl 74_37 1 known missense c.3698 p.P1233L 0.998 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 0 no_errors 0 0 0 63 0 0 53 4 7.02 0 0 0.00 0 0 0.00 FOXE3 0 genome.wustl.edu 37 1 47882166 47882168 + In_Frame_Del DEL GGC GGC - TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 GGC GGC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 1 47882166 47882168 GGC 0 DEL FOXE3 ENST00000335071 human ensembl 74_37 1 known in_frame_del c.179_181 p.R64in_frame_del 0.991:0.856:0.786 NULL pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head 0 no_errors 0 0 0 8 0 0 4 2 33.33 0 0 0.00 0 0 0.00 NKPD1 0 genome.wustl.edu 37 19 45655769 45655771 + In_Frame_Del DEL CTG CTG - TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 CTG CTG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 19 45655769 45655771 CTG 0 DEL NKPD1 ENST00000317951 human ensembl 74_37 -1 known in_frame_del c.1926_1924 p.Q642in_frame_del 0.910:0.925:0.950 NULL pfam_KAP_NTPase 0 no_errors 0 0 0 35 0 0 17 2 10.53 28 0 0.00 10 0 0.00 BMS1P20 0 genome.wustl.edu 37 22 22661172 22661173 + RNA INS - - C TCGA-ZB-A96A-01A-11D-A428-09 TCGA-ZB-A96A-10A-01D-A42B-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a646c617-55f7-49ec-9a1a-a5bd4f8d147a b7627666-1ce3-43b3-b2b7-42ae973cd6ad 22 22661172 22661173 0 C INS BMS1P20 ENST00000426066 human ensembl 74_37 1 known rna NULL NULL 0.640:0.833 0 0 0 no_errors 0 0 0 135 0 0 114 9 7.32 0 0 0.00 0 0 0.00