Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val NR0B1 0 genome.wustl.edu 37 X 30326468 30326468 + Missense_Mutation SNP G G A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 X 30326468 30326468 G A SNP NR0B1 ENST00000378970 human ensembl 74_37 -1 known missense c.1013 p.T338M 0 pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt 0 no_errors 0 0 0 74 0 0 27 19 41.3 75 0 0.00 37 18 32.14 AMER1 0 genome.wustl.edu 37 X 63411803 63411803 + Missense_Mutation SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 X 63411803 63411803 G T SNP AMER1 ENST00000330258 human ensembl 74_37 -1 known missense c.1364 p.T455N 1 pfam_Uncharacterised_FAM123 pfam_Uncharacterised_FAM123 0 no_errors 0 0 0 25 0 0 9 7 43.75 211 0 0.00 153 84 35.44 LRRC7 0 genome.wustl.edu 37 1 70488846 70488846 + Missense_Mutation SNP G G A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 1 70488846 70488846 G A SNP LRRC7 ENST00000035383 human ensembl 74_37 1 known missense c.1469 p.R490H 1 NULL pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ 0 no_errors 0 0 0 20 0 0 19 14 42.42 128 2 1.54 71 39 35.45 ADAM30 0 genome.wustl.edu 37 1 120437039 120437039 + Missense_Mutation SNP G G A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 1 120437039 120437039 G A SNP ADAM30 ENST00000369400 human ensembl 74_37 -1 known missense c.1921 p.R641W 0.119 pfscan_EG-like_dom pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin 0 no_errors 0 0 0 49 0 0 16 12 42.86 266 0 0.00 165 129 43.88 LOC440910 0 genome.wustl.edu 37 2 132046497 132046497 + RNA SNP G G A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 2 132046497 132046497 G A SNP LOC440910 ENST00000560285 human ensembl 74_37 1 known rna NULL NULL 0.012 0 0 0 no_errors 0 0 0 30 0 0 11 7 38.89 15 0 0.00 7 4 36.36 BRPF1 0 genome.wustl.edu 37 3 9786002 9786002 + Silent SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 3 9786002 9786002 G T SNP BRPF1 ENST00000383829 human ensembl 74_37 1 known silent c.2730 p.P910 1 NULL pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain 0 no_errors 0 0 0 142 0 0 52 41 44.09 107 0 0.00 65 56 46.28 CTNNB1 0 genome.wustl.edu 37 3 41280717 41280717 + Missense_Mutation SNP C C T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 3 41280717 41280717 C T SNP CTNNB1 ENST00000349496 human ensembl 74_37 1 known missense c.2230 p.P744S 1 NULL pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin 0 no_errors 0 0 0 50 0 0 8 13 61.9 116 0 0.00 58 51 46.79 PHOX2B 0 genome.wustl.edu 37 4 41747864 41747864 + Missense_Mutation SNP T T C TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 4 41747864 41747864 T C SNP PHOX2B ENST00000226382 human ensembl 74_37 -1 known missense c.905 p.N302S 1 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1 0 no_errors 0 0 0 24 0 0 14 10 41.67 137 0 0.00 72 44 37.93 METTL14 0 genome.wustl.edu 37 4 119626850 119626850 + Missense_Mutation SNP A A G TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 4 119626850 119626850 A G SNP METTL14 ENST00000388822 human ensembl 74_37 1 known missense c.940 p.I314V 1 pfam_MT-A70-like,pfscan_MT-A70-like pfam_MT-A70-like,pfscan_MT-A70-like 0 no_errors 0 0 0 95 0 0 52 10 16.13 269 1 0.37 229 40 14.87 SYNE1 0 genome.wustl.edu 37 6 152734623 152734623 + Missense_Mutation SNP C C G TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 6 152734623 152734623 C G SNP SYNE1 ENST00000265368 human ensembl 74_37 -1 known missense c.6094 p.E2032Q 1 superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH 0 no_errors 0 0 0 134 0 0 63 27 30 285 0 0.00 150 93 38.11 GTF2I 0 genome.wustl.edu 37 7 74146970 74146970 + Missense_Mutation SNP T T A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 7 74146970 74146970 T A SNP GTF2I ENST00000324896 human ensembl 74_37 1 known missense c.1271 p.L424H 1 pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I 0 no_errors 0 0 0 512 0 0 170 135 44.26 120 0 0.00 66 67 50.38 RP1L1 0 genome.wustl.edu 37 8 10466172 10466172 + Missense_Mutation SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 8 10466172 10466172 G T SNP RP1L1 ENST00000382483 human ensembl 74_37 -1 known missense c.5436 p.D1812E 0 NULL pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom 0 no_errors 0 0 0 35 1 2.78 26 3 10.34 201 0 0.00 204 17 7.66 PLIN2 0 genome.wustl.edu 37 9 19120930 19120930 + Silent SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 9 19120930 19120930 G T SNP PLIN2 ENST00000276914 human ensembl 74_37 -1 known silent c.543 p.T181 0.998 pfam_Perilipin,pirsf_Perilipin pfam_Perilipin,pirsf_Perilipin 0 no_errors 0 0 0 31 0 0 14 8 36.36 162 0 0.00 116 73 38.22 HRAS 0 genome.wustl.edu 37 11 534285 534285 + Missense_Mutation SNP C C A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 11 534285 534285 C A SNP HRAS ENST00000311189 human ensembl 74_37 -1 known missense c.38 p.G13V 1 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors rs104894226 C->A,G,T 0 45 0 0 9 16 64 88 0 0.00 51 44 46.32 DYNC2H1 0 genome.wustl.edu 37 11 103019260 103019260 + Nonsense_Mutation SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 11 103019260 103019260 G T SNP DYNC2H1 ENST00000398093 human ensembl 74_37 1 known nonsense c.2860 p.E954* 1 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase 0 no_errors 0 0 0 105 0 0 33 17 34 257 0 0.00 156 95 37.70 CD3E 0 genome.wustl.edu 37 11 118184528 118184528 + Missense_Mutation SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 11 118184528 118184528 G T SNP CD3E ENST00000361763 human ensembl 74_37 1 known missense c.459 p.K153N 0.987 NULL pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM 0 no_errors 0 0 0 28 0 0 10 15 60 84 0 0.00 72 53 42.40 NFATC4 0 genome.wustl.edu 37 14 24839464 24839464 + Missense_Mutation SNP G G A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 14 24839464 24839464 G A SNP NFATC4 ENST00000413692 human ensembl 74_37 1 known missense c.1049 p.R350H 0.934 NULL pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT 0 no_errors 0 0 0 64 0 0 39 20 33.9 80 0 0.00 33 30 47.62 SOS2 0 genome.wustl.edu 37 14 50697942 50697942 + Silent SNP C C G TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 14 50697942 50697942 C G SNP SOS2 ENST00000216373 human ensembl 74_37 -1 known silent c.60 p.R20 1 superfamily_Histone-fold pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N 0 no_errors 0 0 0 10 0 0 5 10 66.67 81 0 0.00 58 28 32.56 ADAM21P1 0 genome.wustl.edu 37 14 70712650 70712650 + RNA SNP A A C TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 14 70712650 70712650 A C SNP ADAM21P1 ENST00000530196 human ensembl 74_37 -1 known rna NULL NULL 0.004 0 0 0 no_errors 0 0 0 115 0 0 49 26 34.67 100 0 0.00 85 43 33.59 ARHGAP23 0 genome.wustl.edu 37 17 36622966 36622966 + Nonsense_Mutation SNP C C T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 17 36622966 36622966 C T SNP ARHGAP23 ENST00000431231 human ensembl 74_37 1 known nonsense c.1042 p.R348* 1 NULL pfam_RhoGAP_dom,pfam_PDZ,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom 0 no_errors 0 0 0 27 0 0 14 9 39.13 32 0 0.00 43 5 10.42 SCN4A 0 genome.wustl.edu 37 17 62043590 62043590 + Missense_Mutation SNP C C T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 17 62043590 62043590 C T SNP SCN4A ENST00000435607 human ensembl 74_37 -1 known missense c.1114 p.G372S 1 pfam_Ion_trans_dom pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2 0 no_errors 0 0 0 96 0 0 34 18 34.62 173 0 0.00 103 43 29.45 MUC16 0 genome.wustl.edu 37 19 9063747 9063747 + Nonsense_Mutation SNP G G C TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 19 9063747 9063747 G C SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known nonsense c.23699 p.S7900* 0 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom 0 no_errors 0 0 0 51 0 0 17 15 46.88 255 0 0.00 137 125 47.71 SEPW1 0 genome.wustl.edu 37 19 48282004 48282004 + RNA SNP C C T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 19 48282004 48282004 C T SNP SEPW1 ENST00000599302 human ensembl 74_37 1 known rna NULL NULL 0 0 0 0 no_errors rs368032623 C->T 0.9998,0.0001997 29 0 0 9 14 60.87 47 0 0.00 21 13 38.24 PAX1 0 genome.wustl.edu 37 20 21690063 21690063 + Silent SNP C C T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 20 21690063 21690063 C T SNP PAX1 ENST00000398485 human ensembl 74_37 1 known silent c.1263 p.F421 1 NULL pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom 0 no_errors 0 0 0 11 0 0 5 3 37.5 54 0 0.00 37 34 47.89 CDH22 0 genome.wustl.edu 37 20 44869801 44869801 + Silent SNP G G A TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 20 44869801 44869801 G A SNP CDH22 ENST00000372262 human ensembl 74_37 -1 known silent c.351 p.G117 0.024 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin 0 no_errors 0 0 0 39 0 0 8 16 66.67 93 0 0.00 37 31 45.59 LZTR1 0 genome.wustl.edu 37 22 21337374 21337374 + Missense_Mutation SNP A A G TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 22 21337374 21337374 A G SNP LZTR1 ENST00000215739 human ensembl 74_37 1 known missense c.259 p.N87D 1 pfam_Kelch_1,smart_Kelch_1 pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like 0 no_errors 0 0 0 71 0 0 29 19 39.58 195 0 0.00 119 60 33.33 TCF20 0 genome.wustl.edu 37 22 42608141 42608141 + Missense_Mutation SNP T T G TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 T T T G T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 22 42608141 42608141 T G SNP TCF20 ENST00000359486 human ensembl 74_37 -1 known missense c.3171 p.E1057D 0.995 NULL smart_Znf_PHD 0 no_errors 0 0 0 53 0 0 30 20 40 239 0 0.00 164 115 41.07 GET4 0 genome.wustl.edu 37 7 935032 935034 + In_Frame_Del DEL CGA CGA - TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 CGA CGA CGA - CGA CGA Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 7 935032 935034 CGA 0 DEL GET4 ENST00000265857 human ensembl 74_37 1 known in_frame_del c.957_959 p.D320in_frame_del 1.000:1.000:1.000 NULL pfam_UPF0363 0 no_errors 0 0 0 55 0 0 33 6 15.38 53 0 0.00 29 19 39.58 RHOBTB1 0 genome.wustl.edu 37 10 62648684 62648690 + Frame_Shift_Del DEL ACTCTGG ACTCTGG - TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 ACTCTGG ACTCTGG ACTCTGG - ACTCTGG ACTCTGG Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 10 62648684 62648690 ACTCTGG 0 DEL RHOBTB1 ENST00000337910 human ensembl 74_37 -1 known frame_shift_del c.742_736 p.P246fs 1.000:0.927:0.995:0.995:0.936:1.000:1.000 superfamily_BTB/POZ_fold pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase 0 no_errors 0 0 0 74 0 0 38 12 24 234 0 0.00 154 21 12.00 GOLGA8T 0 genome.wustl.edu 37 15 30433056 30433056 + Silent SNP C C T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 15 30433056 30433056 C T SNP GOLGA8T ENST00000569052 human ensembl 74_37 1 novel silent c.603 p.R201 0 NULL NULL 0 no_errors 0 0 0 141 0 0 50 36 41.86 0 0 0.00 0 0 0.00 DNM1P47 0 genome.wustl.edu 37 15 102294648 102294648 + RNA SNP T T C TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 15 102294648 102294648 T C SNP DNM1P47 ENST00000561463 human ensembl 74_37 1 known rna NULL NULL 0.999 0 0 0 no_errors 0 0 0 56 0 0 57 9 13.64 12 0 0.00 8 0 0.00 DNM1P47 0 genome.wustl.edu 37 15 102294651 102294651 + RNA SNP T T G TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 15 102294651 102294651 T G SNP DNM1P47 ENST00000561463 human ensembl 74_37 1 known rna NULL NULL 0.999 0 0 0 no_errors 0 0 0 54 0 0 57 9 13.64 12 0 0.00 8 0 0.00 ZNF91 0 genome.wustl.edu 37 19 23544831 23544831 + Missense_Mutation SNP G G T TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 19 23544831 23544831 G T SNP ZNF91 ENST00000300619 human ensembl 74_37 -1 known missense c.950 p.T317N 0.952 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box 0 no_errors 0 0 0 88 0 0 47 4 7.84 4 0 0.00 4 0 0.00 DSPP 0 genome.wustl.edu 37 4 88537109 88537117 + In_Frame_Del DEL AGCAGCGAC AGCAGCGAC - TCGA-ZB-A965-01A-11D-A428-09 TCGA-ZB-A965-10A-01D-A42B-09 AGCAGCGAC AGCAGCGAC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq a2bbec71-ac68-4c79-ae2f-53e3ed39bffb 9a8ab89f-dab5-469c-8a2f-b039eaa0aa10 4 88537109 88537117 AGCAGCGAC 0 DEL DSPP ENST00000282478 human ensembl 74_37 1 known in_frame_del c.3295_3303 p.SSD1102in_frame_del 0.865:0.905:0.920:0.917:0.890:0.802:0.835:0.850:0.862 NULL NULL 0 no_errors 0 0 0 12 0 0 9 4 30.77 1 0 0.00 1 0 0.00