Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
HTATSF1	0	genome.wustl.edu	37	X	135582344	135582344	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	X	135582344	135582344	A	G	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	1	known	missense	c.395	p.N132S	1	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	0	no_errors	0	0	0	340	0	0	199	17	7.87	205	0	0.00	258	39	13.09
CROCCP3	0	genome.wustl.edu	37	1	16812131	16812131	+	RNA	SNP	C	C	T			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	1	16812131	16812131	C	T	SNP	CROCCP3	ENST00000263511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	0	0	0	no_errors	rs551275495	C->T	0.9996,0.0003994	81	0	0	31	6	16.22	22	0	0.00	36	5	12.20
NRXN1	0	genome.wustl.edu	37	2	50850457	50850457	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	2	50850457	50850457	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.1129	p.R377C	1	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	0	no_errors	0	0	0	57	0	0	37	9	19.57	221	0	0.00	196	30	13.27
ENSG00000223200	0	genome.wustl.edu	37	5	60853118	60853118	+	RNA	SNP	G	G	C			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	5	60853118	60853118	G	C	SNP	ENSG00000223200	ENST00000411268	human	ensembl	74_37	1	novel	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	41	0	0	25	8	24.24	86	0	0.00	104	25	19.38
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	383	0	0	213	25	10.46	113	0	0.00	107	18	14.40
NDRG1	0	genome.wustl.edu	37	8	134271450	134271450	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	8	134271450	134271450	T	A	SNP	NDRG1	ENST00000323851	human	ensembl	74_37	-1	known	missense	c.350	p.Q117L	1	pfam_Ndr	pfam_Ndr	0	no_errors	0	0	0	33	0	0	32	4	11.11	139	0	0.00	169	11	6.11
KIAA1462	0	genome.wustl.edu	37	10	30317392	30317392	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	10	30317392	30317392	T	C	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.1685	p.Q562R	1	NULL	NULL	0	no_errors	0	0	0	41	0	0	27	5	15.62	245	0	0.00	258	28	9.79
ZNF487	0	genome.wustl.edu	37	10	43977042	43977042	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	10	43977042	43977042	G	T	SNP	ZNF487	ENST00000431662	human	ensembl	74_37	1	known	missense	c.491	p.R164L	0.001	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	145	0	0	102	11	9.73	198	0	0.00	308	16	4.94
TCAM1P	0	genome.wustl.edu	37	17	61939720	61939720	+	RNA	SNP	G	G	A			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	17	61939720	61939720	G	A	SNP	TCAM1P	ENST00000478379	human	ensembl	74_37	1	known	rna	NULL	NULL	0.146	0	0	0	no_errors	0	0	0	45	0	0	23	3	11.54	107	1	0.93	133	7	5.00
ENSG00000260415	0	genome.wustl.edu	37	12	52204038	52204039	+	Frame_Shift_Ins	INS	-	-	A			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	12	52204038	52204039	0	A	INS	ENSG00000260415	ENST00000599343	human	ensembl	74_37	1	known	frame_shift_ins	c.80_81	p.K31fs	0.000:0.001	NULL	NULL	0	no_errors	0	0	0	28	0	0	7	2	22.22	75	1	1.32	78	6	7.14
ARL6IP5	0	genome.wustl.edu	37	3	69149138	69149138	+	Silent	SNP	C	C	T			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	3	69149138	69149138	C	T	SNP	ARL6IP5	ENST00000484921	human	ensembl	74_37	1	known	silent	c.192	p.G64	0.002	NULL	pfam_Prenylated_rab_accept_PRA1	0	no_errors	0	0	0	32	0	0	14	3	17.65	0	0	0.00	2	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102295710	102295710	+	RNA	SNP	C	C	A			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	15	102295710	102295710	C	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	rs200118705	C->A	0	34	0	0	17	5	22.73	4	0	0.00	5	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102295714	102295714	+	RNA	SNP	T	T	C			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	15	102295714	102295714	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.998	0	0	0	no_errors	rs201074749	T->C	0	33	0	0	16	6	27.27	4	0	0.00	5	0	0.00
C6orf132	0	genome.wustl.edu	37	6	42074969	42074970	+	Frame_Shift_Ins	INS	-	-	G			TCGA-XU-AAY0-01A-11D-A428-09	TCGA-XU-AAY0-10A-01D-A42B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1bd31f65-a32e-4d78-ba3f-4b9788ceb252	4f346292-ef69-4ac9-b212-0c01f61f4039	6	42074969	42074970	0	G	INS	C6orf132	ENST00000341865	human	ensembl	74_37	-1	putative	frame_shift_ins	c.681_680	p.P228fs	0.001:0.050	NULL	NULL	0	no_errors	0	0	0	9	0	0	4	2	33.33	6	0	0.00	5	0	0.00