Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
NUDCD2	0	genome.wustl.edu	37	5	162884088	162884089	+	Splice_Site	INS	-	-	A			TCGA-XU-AAXY-01A-11D-A428-09	TCGA-XU-AAXY-10A-01D-A42B-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2b99c573-4c13-45b8-bfc6-eac1400e57bd	a8e97066-ec44-4ffa-9346-6dd78d038388	5	162884088	162884089	0	A	INS	NUDCD2	ENST00000302764	human	ensembl	74_37	-1	known	splice_site_ins	c.239-3_239-2	e3-2	0.984:0.001	0	0	0	no_errors	0	0	0	37	0	0	18	3	14.29	115	1	0.86	99	5	4.81
HLA-V	0	genome.wustl.edu	37	6	29760077	29760077	+	RNA	SNP	G	G	T			TCGA-XU-AAXY-01A-11D-A428-09	TCGA-XU-AAXY-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2b99c573-4c13-45b8-bfc6-eac1400e57bd	a8e97066-ec44-4ffa-9346-6dd78d038388	6	29760077	29760077	G	T	SNP	HLA-V	ENST00000446817	human	ensembl	74_37	1	known	rna	NULL	NULL	0.919	0	0	0	no_errors	0	0	0	36	0	0	34	4	10.53	11	0	0.00	9	0	0.00
TMTC1	0	genome.wustl.edu	37	12	29936577	29936577	+	Silent	SNP	T	T	C			TCGA-XU-AAXY-01A-11D-A428-09	TCGA-XU-AAXY-10A-01D-A42B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2b99c573-4c13-45b8-bfc6-eac1400e57bd	a8e97066-ec44-4ffa-9346-6dd78d038388	12	29936577	29936577	T	C	SNP	TMTC1	ENST00000539277	human	ensembl	74_37	-1	putative	silent	c.108	p.A36	0.995	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	0	no_errors	0	0	0	25	0	0	17	4	19.05	1	0	0.00	2	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102300309	102300309	+	RNA	SNP	C	C	G			TCGA-XU-AAXY-01A-11D-A428-09	TCGA-XU-AAXY-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2b99c573-4c13-45b8-bfc6-eac1400e57bd	a8e97066-ec44-4ffa-9346-6dd78d038388	15	102300309	102300309	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	27	0	0	15	7	31.82	1	0	0.00	3	0	0.00
PLEKHM1P	0	genome.wustl.edu	37	17	62796799	62796799	+	RNA	SNP	G	G	A			TCGA-XU-AAXY-01A-11D-A428-09	TCGA-XU-AAXY-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2b99c573-4c13-45b8-bfc6-eac1400e57bd	a8e97066-ec44-4ffa-9346-6dd78d038388	17	62796799	62796799	G	A	SNP	PLEKHM1P	ENST00000578036	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	29	0	0	27	4	12.9	20	0	0.00	6	0	0.00