Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
REG1A	0	genome.wustl.edu	37	2	79349973	79349973	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	2	79349973	79349973	C	T	SNP	REG1A	ENST00000233735	human	ensembl	74_37	1	known	missense	c.328	p.R110C	0.88	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	0	no_errors	rs374824380	C->T	0	37	0	0	53	4	7.02	197	0	0.00	144	27	15.79
FMNL2	0	genome.wustl.edu	37	2	153493018	153493018	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	2	153493018	153493018	C	T	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	1	known	missense	c.2758	p.H920Y	1	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	0	no_errors	0	0	0	36	0	0	48	6	11.11	173	0	0.00	142	11	7.19
DNAH7	0	genome.wustl.edu	37	2	196912090	196912090	+	Silent	SNP	A	A	G			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	2	196912090	196912090	A	G	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.384	p.L128	0.966	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	0	no_errors	0	0	0	48	0	0	80	8	8.99	277	0	0.00	309	18	5.50
FAM105A	0	genome.wustl.edu	37	5	14608872	14608872	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	5	14608872	14608872	G	T	SNP	FAM105A	ENST00000274217	human	ensembl	74_37	1	known	missense	c.643	p.G215C	0.719	prints_FAM105,prints_FAM105A	prints_FAM105,prints_FAM105A	0	no_errors	0	0	0	24	0	0	35	4	10.26	292	0	0.00	253	35	12.07
ARHGEF28	0	genome.wustl.edu	37	5	73183500	73183500	+	Missense_Mutation	SNP	C	C	G			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	5	73183500	73183500	C	G	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	1	known	missense	c.3383	p.A1128G	1	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	0	no_errors	0	0	0	58	0	0	74	9	10.84	289	0	0.00	333	27	7.48
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	243	0	0	355	33	8.48	140	0	0.00	133	18	11.84
UBN2	0	genome.wustl.edu	37	7	138968003	138968003	+	Silent	SNP	T	T	A			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	7	138968003	138968003	T	A	SNP	UBN2	ENST00000473989	human	ensembl	74_37	1	known	silent	c.2352	p.P784	0.866	NULL	NULL	0	no_errors	0	0	0	38	0	0	44	5	10.2	208	0	0.00	182	12	6.19
GPR158	0	genome.wustl.edu	37	10	25891104	25891104	+	RNA	SNP	G	G	T			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	10	25891104	25891104	G	T	SNP	GPR158	ENST00000490549	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	65	0	0	76	7	8.43	267	0	0.00	308	16	4.94
MUC6	0	genome.wustl.edu	37	11	1018111	1018111	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	11	1018111	1018111	C	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.4690	p.A1564S	0	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	0	no_errors	0	0	0	54	0	0	67	6	8.22	119	0	0.00	124	6	4.58
NCAPD3	0	genome.wustl.edu	37	11	134028286	134028286	+	Silent	SNP	A	A	G			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	11	134028286	134028286	A	G	SNP	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	silent	c.3972	p.H1324	0	pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	0	no_errors	0	0	0	43	0	0	40	7	14.89	68	0	0.00	64	6	8.57
CDH11	0	genome.wustl.edu	37	16	65038702	65038702	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	16	65038702	65038702	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.71	p.A24V	0.001	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	0	no_errors	0	0	0	35	0	0	16	3	15.79	46	0	0.00	42	5	10.64
HP	0	genome.wustl.edu	37	16	72094699	72094699	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	16	72094699	72094699	T	A	SNP	HP	ENST00000355906	human	ensembl	74_37	1	known	missense	c.1131	p.F377L	0.999	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	0	no_errors	0	0	0	87	0	0	71	6	7.79	98	0	0.00	77	7	8.33
FAM187A	0	genome.wustl.edu	37	17	42982079	42982079	+	Silent	SNP	A	A	G			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	17	42982079	42982079	A	G	SNP	FAM187A	ENST00000331733	human	ensembl	74_37	1	known	silent	c.882	p.P294	0.015	pfscan_Ig-like_dom	pfam_Ig_V-set,pfscan_Ig-like_dom	0	no_errors	0	0	0	35	0	0	24	4	14.29	167	0	0.00	146	21	12.50
KPNB1	0	genome.wustl.edu	37	17	45747113	45747113	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	17	45747113	45747113	G	A	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	1	known	missense	c.1294	p.V432I	0.998	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_HEAT_type_2	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	0	no_errors	0	0	0	69	0	0	73	8	9.88	157	0	0.00	135	11	7.53
ARMCX4	0	genome.wustl.edu	37	X	100748785	100748785	+	Frame_Shift_Del	DEL	C	C	-			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	X	100748785	100748785	C	0	DEL	ARMCX4	ENST00000423738	human	ensembl	74_37	1	putative	frame_shift_del	c.5209	p.P1737fs	0.003	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	0	no_errors	0	0	0	37	0	0	25	11	30.56	113	0	0.00	94	15	13.76
MT-ND5	0	genome.wustl.edu	37	MT	12430	12430	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	MT	12430	12430	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	1	known	missense	c.94	p.Y32H	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	0	no_errors	0	0	0	20	0	0	11	6	35.29	0	0	0.00	0	0	0.00
CROCCP3	0	genome.wustl.edu	37	1	16802417	16802417	+	RNA	SNP	C	C	T			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	1	16802417	16802417	C	T	SNP	CROCCP3	ENST00000263511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	0	0	0	no_errors	0	0	0	14	0	0	14	4	22.22	9	0	0.00	7	0	0.00
PTPRG	0	genome.wustl.edu	37	3	61547552	61547552	+	RNA	DEL	C	C	-			TCGA-XU-A92U-01A-11D-A423-09	TCGA-XU-A92U-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31558b0b-c02e-4e5c-8a8e-cae0e043b498	c159aac6-084e-4688-a28e-694a2f6b54b7	3	61547552	61547552	C	0	DEL	PTPRG	ENST00000475527	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	11	0	0	4	2	33.33	11	0	0.00	10	0	0.00