Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MUC4	0	genome.wustl.edu	37	3	195506606	195506606	+	Missense_Mutation	SNP	C	C	G			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	3	195506606	195506606	C	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.11845	p.D3949H	0.777	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	0	no_errors	rs374077908	C->G	0	29	1	3.33	38	9	19.15	20	0	0.00	13	2	13.33
GFPT2	0	genome.wustl.edu	37	5	179731776	179731776	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	5	179731776	179731776	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	74_37	-1	known	missense	c.1838	p.R613H	1	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	0	no_errors	0	0	0	28	0	0	36	4	10	132	0	0.00	93	8	7.92
LRRC27	0	genome.wustl.edu	37	10	134169314	134169314	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	10	134169314	134169314	A	G	SNP	LRRC27	ENST00000368613	human	ensembl	74_37	1	known	missense	c.1094	p.E365G	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	0	no_errors	0	0	0	17	0	0	30	5	14.29	86	0	0.00	75	5	6.25
NOP9	0	genome.wustl.edu	37	14	24769880	24769880	+	Missense_Mutation	SNP	A	A	G			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	14	24769880	24769880	A	G	SNP	NOP9	ENST00000267425	human	ensembl	74_37	1	known	missense	c.514	p.K172E	0.014	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	0	no_errors	0	0	0	28	0	0	49	5	9.26	76	1	1.30	73	5	6.41
OR4F17	0	genome.wustl.edu	37	19	111016	111016	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	19	111016	111016	T	G	SNP	OR4F17	ENST00000318050	human	ensembl	74_37	1	known	missense	c.338	p.F113C	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	0	no_errors	rs200336441	T->G	0	11	0	0	10	9	47.37	1	0	0.00	0	4	100.00
LOC101927209	0	genome.wustl.edu	37	1	142690865	142690865	+	RNA	SNP	C	C	G			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	1	142690865	142690865	C	G	SNP	LOC101927209	ENST00000446205	human	ensembl	74_37	1	known	rna	NULL	NULL	0.037	0	0	0	no_errors	rs375934109	C->A,G	0	9	0	0	13	10	43.48	0	0	0.00	0	0	0.00
MUC20	0	genome.wustl.edu	37	3	195452575	195452575	+	Silent	SNP	C	C	T			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	3	195452575	195452575	C	T	SNP	MUC20	ENST00000447234	human	ensembl	74_37	1	known	silent	c.1101	p.S367	0.019	NULL	NULL	0	no_errors	rs371281295	C->T	0	52	1	1.89	38	8	17.39	0	0	0.00	0	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102304383	102304383	+	RNA	SNP	C	C	A			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	15	102304383	102304383	C	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.995	0	0	0	no_errors	0	0	0	41	1	2.38	24	5	17.24	8	0	0.00	8	0	0.00
ENSG00000221734	0	genome.wustl.edu	37	9	117554505	117554514	+	RNA	DEL	ACACACACAC	ACACACACAC	-			TCGA-XM-A8RH-01A-11D-A423-09	TCGA-XM-A8RH-10A-01D-A426-09	ACACACACAC	ACACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e29715d2-4b6c-4ca0-8609-2331f99ac1e2	a7fbac9e-570d-4ef4-b2d4-c282c3973c97	9	117554505	117554514	ACACACACAC	0	DEL	ENSG00000221734	ENST00000408807	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.007:0.007:0.010:0.012:0.014:0.015:0.016:0.016:0.016:0.014	0	0	0	no_errors	rs142936750	TACACACACAC->T	0	12	0	0	13	4	23.53	0	0	0.00	0	0	0.00