Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
UTP11L	0	genome.wustl.edu	37	1	38488445	38488445	+	Silent	SNP	T	T	G			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	1	38488445	38488445	T	G	SNP	UTP11L	ENST00000373014	human	ensembl	74_37	1	known	silent	c.642	p.V214	0.991	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	0	no_errors	0	0	0	56	0	0	52	6	10.34	182	2	1.09	164	13	7.34
FMN2	0	genome.wustl.edu	37	1	240421266	240421266	+	Missense_Mutation	SNP	A	A	G			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	1	240421266	240421266	A	G	SNP	FMN2	ENST00000319653	human	ensembl	74_37	1	known	missense	c.4087	p.K1363E	1	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	0	no_errors	0	0	0	74	0	0	79	8	9.2	280	2	0.71	246	17	6.46
NCKAP5	0	genome.wustl.edu	37	2	133721327	133721327	+	Missense_Mutation	SNP	G	G	A			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	2	133721327	133721327	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.545	p.T182I	1	NULL	NULL	0	no_errors	rs371738627	G->A	0	77	0	0	49	4	7.55	289	0	0.00	253	18	6.62
STK10	0	genome.wustl.edu	37	5	171520785	171520785	+	Silent	SNP	G	G	A			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	5	171520785	171520785	G	A	SNP	STK10	ENST00000176763	human	ensembl	74_37	-1	known	silent	c.1185	p.V395	0	NULL	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	87	0	0	50	5	9.09	104	0	0.00	113	6	5.04
MIR548U	0	genome.wustl.edu	37	6	57255004	57255004	+	RNA	SNP	A	A	T			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	6	57255004	57255004	A	T	SNP	MIR548U	ENST00000390728	human	ensembl	74_37	1	known	rna	NULL	NULL	0.016	0	0	0	no_errors	0	0	0	76	0	0	54	8	12.7	244	1	0.41	141	10	6.58
ZAN	0	genome.wustl.edu	37	7	100355891	100355891	+	Missense_Mutation	SNP	G	G	A			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	7	100355891	100355891	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	1	known	missense	c.3376	p.E1126K	0.005	smart_VWC_out	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	0	no_errors	0	0	0	46	0	0	35	4	10.26	70	0	0.00	58	7	10.77
ANAPC5	0	genome.wustl.edu	37	12	121756196	121756196	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	12	121756196	121756196	G	A	SNP	ANAPC5	ENST00000261819	human	ensembl	74_37	-1	known	nonsense	c.1777	p.R593*	0.994	smart_TPR_repeat	smart_TPR_repeat	0	no_errors	0	0	0	60	1	1.64	40	5	11.11	96	0	0.00	89	8	8.25
TNFAIP8L1	0	genome.wustl.edu	37	19	4652152	4652152	+	Missense_Mutation	SNP	C	C	T			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	19	4652152	4652152	C	T	SNP	TNFAIP8L1	ENST00000327473	human	ensembl	74_37	1	known	missense	c.271	p.R91C	0.993	pfam_DUF758	pfam_DUF758	0	no_errors	0	0	0	69	0	0	43	5	10.42	25	0	0.00	22	3	12.00
TPSD1	0	genome.wustl.edu	37	16	1306554	1306554	+	Silent	SNP	G	G	A			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	16	1306554	1306554	G	A	SNP	TPSD1	ENST00000211076	human	ensembl	74_37	1	known	silent	c.120	p.G40	0.035	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	0	no_errors	0	0	0	128	0	0	68	8	10.53	6	0	0.00	1	0	0.00
FAM230C	0	genome.wustl.edu	37	22	21663653	21663653	+	RNA	SNP	G	G	T			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	22	21663653	21663653	G	T	SNP	FAM230C	ENST00000436681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.747	0	0	0	no_errors	0	0	0	43	1	2.27	32	9	21.95	3	0	0.00	1	0	0.00
TTC13	0	genome.wustl.edu	37	1	231114527	231114527	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	1	231114527	231114527	A	0	DEL	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	frame_shift_del	c.50	p.V17fs	0.958	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	0	no_errors	0	0	0	22	0	0	4	2	33.33	0	0	0.00	0	0	0.00
ENSG00000221474	0	genome.wustl.edu	37	3	122000728	122000729	+	RNA	DEL	TG	TG	-			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	3	122000728	122000729	TG	0	DEL	ENSG00000221474	ENST00000408547	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.000:0.001	0	0	0	no_errors	0	0	0	23	0	0	16	4	20	0	0	0.00	0	0	0.00
MAP7	0	genome.wustl.edu	37	6	136682169	136682169	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	6	136682169	136682169	C	0	DEL	MAP7	ENST00000454590	human	ensembl	74_37	-1	known	frame_shift_del	c.1741	p.E581fs	1	pfam_MAP7	pfam_MAP7	0	no_errors	0	0	0	23	0	0	8	2	20	8	0	0.00	8	0	0.00
SIX4	0	genome.wustl.edu	37	14	61190488	61190490	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-3G-AB0T-01A-11D-A423-09	TCGA-3G-AB0T-11A-11D-A426-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ba0511a7-debd-4491-b064-6973b32d5ccf	a2625641-0a2c-4c32-9c4b-cf1c9be835b5	14	61190488	61190490	GCG	0	DEL	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	in_frame_del	c.305_303	p.A102in_frame_del	1.000:0.999:0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	0	no_errors	0	0	0	9	0	0	4	2	33.33	15	0	0.00	8	0	0.00