writing sdrf to TGCT.merger.sdrf.txt ------------------------------------------------------------------ 2016-02-12 17:35:51.902696 . ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/TGCT/22224896/infile3.input.tsv'] Make a softlink...... Flag: False. Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/TGCT/22224896/infile3.input.tsv Make a softlink is done.