Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV DAB1 1600 mdanderson.org 37 1 57480875 57480875 + Silent SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_021080 exon14 c.G1125A p.L375L AGCTGGCAAAGGC 49 3 0.06 78 0 0 1 0 0.00 RNPC3 55599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 104068861 104068861 + Missense_Mutation SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_017619 exon1 c.G169A p.V57I GTGCGGGTCCTGT 117 17 0.15 162 0 0 6 1 0.17 NHLH2 4808 broad.mit.edu 37 1 116383281 116383281 + Translation_Start_Site SNP C C A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . NHLH2 . . . . CCGCTCCTATCGT 88 4 0.05 80 1 0.0125 8 0 0 ZNF697 90874 broad.mit.edu;mdanderson.org 37 1 120165996 120165996 + Missense_Mutation SNP C C G novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . ZNF697 NM_001080470 exon3 c.G970C p.E324Q AGGCCTCGCCGCA 17 3 0.18 8 0 0 26 2 0 0.00 NUDT17 200035 hgsc.bcm.edu 37 1 145589328 145589328 + Missense_Mutation SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 NUDT17,NS,carcinoma,+2,1 NUDT17 NM_001012758 exon1 c.G100A p.G34R ACGTCCCGAGCCC 73 4 0.05 80 0 0 2 1 2 0 0.00 OR13A1 79290 mdanderson.org 37 10 45799291 45799291 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001004297 exon4 c.C580A p.H194N AGAAATGGATAAT 20 2 0.10 41 0 0 0 0 NOC3L 64318 bcgsc.ca 37 10 96094473 96094473 + Missense_Mutation SNP G G T rs201691751 alternate_allele TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . NOC3L NM_022451 exon20 c.C2192A p.S731Y GTAGCAGATCTAA 56 4 0.07 53 0 0 67 68 0 0.00 C10orf76 79591 mdanderson.org 37 10 103769735 103769735 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_024541 exon12 c.C877A p.Q293K CTTACTGTACTGA 50 3 0.06 66 1 0.0151515152 17 1 0.06 CDHR5 53841 broad.mit.edu 37 11 621227 621227 + Missense_Mutation SNP T T G novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . CDHR5 NM_021924 exon7 c.A642C p.E214D GCTGGGTTCCACA 87 11 0.13 100 9 0.09 77 7 0 0.00 RAB3IL1 5866 ucsc.edu;bcgsc.ca 37 11 61675532 61675532 + Silent SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 RAB3IL1,NS,carcinoma,-1,1 RAB3IL1 NM_001271686 exon2 c.G399A p.A133A CTTCTGCGCTCTG 30 4 0.13 38 0 0 39 1 24 0 0.00 ANKRD13D 338692 mdanderson.org 37 11 67066580 67066580 + Silent SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_207354 exon7 c.C783T p.S261S TGTTAGCGGCTAC 50 3 0.06 66 0 0 52 0 0.00 HEPHL1 341208 mdanderson.org 37 11 93836181 93836181 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 HEPHL1,NS,carcinoma,-1,1 HEPHL1 NM_001098672 exon15 c.G2677T p.V893L AACTTTGTGAAGG 53 3 0.06 77 0 0 -1 1 0 0 ATM 472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108139142 108139142 + Missense_Mutation SNP A A G novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_000051 exon18 c.A2644G p.I882V GGTGCCATTAATC 87 26 0.30 72 0 0 3 1 0.33 CHD4 1108 hgsc.bcm.edu 37 12 6711150 6711150 + Missense_Mutation SNP C C A rs150832622 bycluster;by1000genomes TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001273 exon4 c.G414T p.E138D ATCCTCCTCCTCC 95 4 0.04 33 0 0 0.002 104 0 0.00 . 0 broad.mit.edu 37 12 52493869 52493869 + RNA DEL C C - novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . TCCTCTCCCCCCC 6 3 0.50 4 0 0 0 0 KRT3 3850 hgsc.bcm.edu 37 12 53183951 53183951 + Missense_Mutation SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 KRT3,rectum,carcinoma,0,1 KRT3 NM_057088 exon9 c.G1762A p.G588S CAAAGCCGCTGCC 25 6 0.24 20 0 0 0 1 0 0 ITGB7 3695 mdanderson.org 37 12 53586314 53586314 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_000889 exon14 c.C1955A p.A652E CACTCTGCACAGT 40 3 0.08 47 0 0 57 0 0.00 TAOK3 51347 broad.mit.edu;mdanderson.org 37 12 118682740 118682740 + Missense_Mutation SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . TAOK3 NM_016281 exon4 c.G151A p.A51T TAATTGCCACCAC 62 4 0.06 59 0 0 151 13 0 0.00 EXOC3L4 91828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 103568544 103568544 + Nonsense_Mutation SNP G G T rs373034943 alternate_allele TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001077594 exon2 c.G484T p.E162X GTGGCCGAGAAGG 70 24 0.34 62 0 0 5 0 0.00 CYFIP1 23191 broad.mit.edu;mdanderson.org 37 15 22954288 22954288 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . CYFIP1 NM_014608 exon14 c.G1438T p.V480F CACACCGTCTATG 92 4 0.04 115 0 0 159 66 0 0.00 . 0 bcgsc.ca 37 15 23407031 23407031 + Missense_Mutation SNP T T C rs376343793 TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . TCCTGCTTCCACA 164 14 0.09 195 3 0.0153846154 0 0 FMN1 342184 mdanderson.org 37 15 33261197 33261197 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001103184 exon4 c.C2036A p.P679Q GGTAGCGGTGGCC 27 2 0.07 38 0 0 1 0 0.00 VPS13C 54832 mdanderson.org 37 15 62276086 62276086 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_020821 exon20 c.C1847A p.P616Q TCCTCCGGATTGG 59 3 0.05 84 0 0 2 0 0.00 SOX8 30812 mdanderson.org 37 16 1032207 1032207 + Silent SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_014587 exon1 c.G285A p.A95A CGGCGCGCTCAAA 13 2 0.15 9 0 0 4 0 0.00 PPL 5493 mdanderson.org 37 16 4945266 4945266 + Missense_Mutation SNP T T C novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_002705 exon11 c.A1238G p.E413G ACCTGCTCCCCCT 48 3 0.06 57 0 0 13 0 0.00 LOC653786 0 broad.mit.edu 37 16 22579566 22579569 + RNA DEL ATTC ATTC - novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 ATTC ATTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . GGGTTAATTCATC 88 11 0.13 99 6 0.0606060606 0 0 NOD2 64127 mdanderson.org 37 16 50741855 50741855 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_022162 exon3 c.G630T p.L210F CCCATTGGCCCTG 92 4 0.04 112 0 0 3 0 0.00 RRAD 6236 mdanderson.org 37 16 66958768 66958768 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_004165 exon2 c.C315A p.S105R CAGGGCGCTCTTG 14 2 0.14 15 0 0 140 0 0.00 CCDC43 124808 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 42759494 42759494 + Missense_Mutation SNP G G C novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001099225 exon3 c.C305G p.A102G GCAATGGCCTGTA 172 8 0.05 157 0 0 55 1 0.02 HEXIM1 0 broad.mit.edu 37 17 43229643 43229644 + RNA INS - - C rs146564091 bycluster;by1000genomes TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . HEXIM1 . . . . TTTCTTTATTTTT 7 2 0.29 6 0 0 25 0 0 TBC1D3P1-DHX40P1 653645 bcgsc.ca 37 17 58066651 58066651 + RNA SNP C C T rs376360537 TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . GTAAAGCTGTTTA 433 25 0.06 409 7 0.0171149144 1 1 1.00 ZFR2 23217 mdanderson.org 37 19 3831689 3831689 + Silent SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_015174 exon4 c.C567A p.P189P GTAGGAGGGCGGG 26 3 0.12 36 0 0 0 0 PRR22 163154 mdanderson.org 37 19 5783886 5783886 + Silent SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001134316 exon3 c.C372A p.A124A CCCCGGGGCCTTG 36 3 0.08 29 0 0 35 0 0.00 PRKCSH 5589 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 11558391 11558391 + Silent SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 PRKCSH,NS,carcinoma,0,1 PRKCSH NM_001001329 exon11 c.G987A p.E329E AGAAGAGGAGGAG 77 5 0.06 67 0 0 0 1 101 3 0.03 CCDC105 126402 mdanderson.org 37 19 15132449 15132449 + Nonsense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 CCDC105,NS,carcinoma,0,2 CCDC105 NM_173482 exon5 c.G1063T p.G355X ACGTTAGGACTGA 55 3 0.05 58 0 0 0 2 0 0 IFI30 10437 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 18288094 18288094 + Missense_Mutation SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . IFI30 NM_006332 exon5 c.G628A p.V210I GTCACCGTCAATG 113 6 0.05 136 0 0 12 1685 0 0.00 ZNF573 126231 hgsc.bcm.edu 37 19 38260728 38260728 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001172690 exon4 c.C212A p.S71Y GAAATGGAATGTC 98 4 0.04 111 0 0 0 0 OPA3 80207 mdanderson.org 37 19 46087973 46087973 + Missense_Mutation SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001017989 exon1 c.G50A p.R17Q ACCTGCCGGATGC 48 3 0.06 60 0 0 23 0 0.00 HSD17B14 51171 mdanderson.org 37 19 49318335 49318335 + Missense_Mutation SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_016246 exon6 c.G433A p.A145T CGATTGCCCCCAC 50 3 0.06 85 0 0 30 0 0.00 SYT3 84258 hgsc.bcm.edu;broad.mit.edu 37 19 51128793 51128793 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_032298 exon6 c.C1431A p.S477R CCCCTCGCTGATC 97 4 0.04 81 0 0 8 0 0.00 ZNF551 90233 broad.mit.edu 37 19 58198322 58198322 + Missense_Mutation SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . ZNF551 NM_138347 exon3 c.G679A p.E227K TGGGGTGAATACA 44 5 0.11 57 4 0.0701754386 65 10 0 0.00 EVA1A 84141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 75720472 75720472 + Nonsense_Mutation SNP C C A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_032181 exon4 c.G349T p.E117X CCAGCTCCTCCGC 154 34 0.22 170 0 0 5 1 0.20 CCNT2 905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 135694499 135694499 + Missense_Mutation SNP G G C novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_058241 exon3 c.G329C p.C110S ATGCTTGTCTTCA 112 10 0.09 90 0 0 26 7 0.27 LCT 3938 broad.mit.edu 37 2 136575423 136575423 + Missense_Mutation SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . LCT NM_002299 exon6 c.G1195A p.G399R AGCCTCCTTCCAC 72 3 0.04 72 0 0 309 0 0 SIGLEC1 6614 mdanderson.org 37 20 3673619 3673619 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_023068 exon14 c.C3668A p.T1223N CGCAGGGTGTTGG 41 3 0.07 48 0 0 36 0 0.00 MMP11 4320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 24124604 24124604 + Missense_Mutation SNP C C A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_005940 exon7 c.C1267A p.P423T CCCGTGCCCCGCA 81 14 0.17 86 0 0 94 21 0.22 SH3BP1 23616 mdanderson.org 37 22 38038946 38038946 + Missense_Mutation SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_018957 exon5 c.G329A p.R110H TGGCCCGCATCCT 30 3 0.10 49 0 0 82 1 0.01 CELSR1 9620 mdanderson.org 37 22 46931226 46931226 + Silent SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_014246 exon1 c.C1842T p.G614G GCTGCCGCCCCCC 22 3 0.14 35 0 0 5 0 0.00 GRAMD4 23151 broad.mit.edu;mdanderson.org 37 22 47022780 47022780 + Silent SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 GRAMD4,colon,carcinoma,+1,1 GRAMD4 NM_015124 exon1 c.G84T p.S28S TGCCTCGGACACC 77 4 0.05 107 0 0 53 1 10 0 0.00 NT5DC2 64943 mdanderson.org 37 3 52558490 52558490 + Missense_Mutation SNP C C T rs200568224 TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 NT5DC2,NS,carcinoma,-1,1 NT5DC2 NM_001134231 exon14 c.G1670A p.R557H CCTCAGCGGATGT 32 3 0.09 70 0 0 -1 1 430 0 0.00 ADCY5 111 mdanderson.org 37 3 123071367 123071367 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_183357 exon2 c.C1196A p.P399Q TCAGCCGGATAGT 44 3 0.07 42 0 0 3 0 0.00 FAM194A 131831 mdanderson.org 37 3 150421527 150421527 + Silent SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_152394 exon1 c.G159A p.E53E CACCTCCTCCTCC 133 9 0.07 117 0 0 0 0 CPN2 1370 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 194062671 194062671 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 CPN2,NS,carcinoma,0,1 CPN2 NM_001080513 exon2 c.C761A p.T254K AGGTGCGTGATGG 158 18 0.11 126 0 0 0 1 3 0 0.00 DOK7 285489 mdanderson.org 37 4 3494873 3494873 + Missense_Mutation SNP C C A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_173660 exon7 c.C1160A p.T387N TGTGCACCTGCCT 33 3 0.09 39 0 0 1 0 0.00 OTUD4 54726 bcgsc.ca 37 4 146059006 146059006 + Missense_Mutation SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 OTUD4,NS,carcinoma,0,5 OTUD4 NM_001102653 exon21 c.C2726T p.T909I GGCACAGTTTCTC 116 7 0.06 186 3 0.0161290323 120 5 48 0 0.00 BRD8 10902 mdanderson.org 37 5 137513290 137513290 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_139199 exon2 c.C86A p.S29Y ACAGAAGATGCTA 53 3 0.06 56 0 0 68 0 0.00 TNXB 7148 hgsc.bcm.edu 37 6 32024600 32024600 + Missense_Mutation SNP T T C rs369180703 TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 TNXB_ENST00000375247,NS,carcinoma,0,2 TNXB_ENST00000375247 NM_019105 exon23 c.A7906G p.M2636V CTGTCATGGTCAG 120 5 0.04 133 2 0.015037594 0 2 22 0 0.00 ETV7 51513 mdanderson.org 37 6 36343801 36343801 + Missense_Mutation SNP C C T rs145194281 bycluster;by1000genomes TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 ETV7,caecum,carcinoma,0,1 ETV7 NM_016135 exon3 c.G154A p.A52T ACAGTGCGGGCTG 19 2 0.11 15 0 0 0 1 4 0 0.00 REV3L 5980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 111714087 111714087 + Silent SNP T T C novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_002912 exon5 c.A654G p.E218E TGGTATTTCATCT 140 38 0.27 174 0 0 1 0 0.00 TXLNB 167838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 139569008 139569008 + Silent SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_153235 exon8 c.C1116T p.S372S TAGTGTGCTCTGG 143 31 0.22 197 0 0 0 0 UTRN 7402 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 144780096 144780096 + Silent SNP C C T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . UTRN NM_007124 exon19 c.C2475T p.S825S CACTTCCATTTCT 114 34 0.30 133 2 0.015037594 327 3 0 0.00 SYNE1 23345 broad.mit.edu;mdanderson.org 37 6 152631005 152631005 + Nonsense_Mutation SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . SYNE1 NM_182961 exon90 c.C17167T p.Q5723X TGTGCTGCAGCCG 46 4 0.09 49 0 0 3227 3 0 0.00 GRB10 2887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50671755 50671755 + Missense_Mutation SNP T T A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_005311 exon14 c.A1484T p.H495L CTCCCGTGAAACC 77 8 0.10 85 0 0 55 15 0.27 DPY19L2P2 0 broad.mit.edu 37 7 102883442 102883442 + RNA SNP A A G novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . CTCTCCATGGTTG 349 5 0.01 305 0 0 0 0 . 0 broad.mit.edu 37 8 11114186 11114186 + RNA DEL A A - novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . AGCCTTAAAAAAA 6 2 0.33 7 0 0 0 0 PHF20L1 51105 broad.mit.edu 37 8 133826909 133826909 + Frame_Shift_Del DEL A A - novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . PHF20L1 NM_016018 exon10 c.958delA p.K320fs AGTCAGAAAAAAA 243 7 0.03 230 0 0 129 29 0 0.00 PSIP1 11168 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 15472670 15472672 + In_Frame_Del DEL CTG CTG - novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 CTG CTG Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . PSIP1 NM_001128217 exon10 c.936_938del p.312_313del TTCGATCTGCTGC 201 43 0.21 170 0 0 93 403 0 0.00 AQP7 364 mdanderson.org 37 9 33385287 33385287 + Missense_Mutation SNP T T C rs74557595 bycluster TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001170 exon8 c.A745G p.N249D CCCCATTGCTGCA 15 2 0.13 13 0 0 2 0 0.00 RNR1 6052 hgsc.bcm.edu 37 MT 1024 1024 + RNA SNP G G A novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . . . . . GACTACGAAAGTG 33 27 0.82 126 0 0 0 0 SYTL4 94121 mdanderson.org 37 X 99956557 99956557 + Missense_Mutation SNP G G T novel TCGA-YU-A90Y-01A-11D-A435-10 TCGA-YU-A90Y-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32056480-ba82-46ee-bed1-c4ec50b3614c 68dac3a8-75ad-4877-bccf-f8e831ed8b21 . . NM_001129896 exon4 c.C223A p.P75T TTTTGGGACTCAA 45 3 0.07 78 0 0 1 0 0.00