Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AGRN 375790 mdanderson.org 37 1 955749 955749 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_198576 exon1 c.G197T p.C66F ACTCCTGCAAGGT 25 3 0.12 47 0 0 4 0 0.00 KIF1B 23095 broad.mit.edu;mdanderson.org 37 1 10355744 10355744 + Missense_Mutation SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . KIF1B NM_183416 exon17 c.G1559A p.R520H AGCGGCGCCAGGA 66 4 0.06 105 0 0 242 2 0 0.00 NBPF1 55672 broad.mit.edu 37 1 16918653 16918653 + Splice_Site SNP C C T rs75226570 TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . AACTTACTGTTGT 26 3 0.12 42 1 0.0238095238 2 0 0.00 CROCCP2 0 broad.mit.edu 37 1 16945182 16945184 + RNA DEL AAT AAT - novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 AAT AAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . GATGAAAATAATA 6 2 0.33 6 0 0 7 0 0.00 PADI3 51702 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17607185 17607185 + Missense_Mutation SNP G G A rs146338253 byfrequency;alternate_allele TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b PADI3,NS,carcinoma,+1,1 PADI3 NM_016233 exon15 c.G1655A p.R552H GGAACCGTGAGGT 92 9 0.10 124 0 0 1 1 0 0 PUM1 9698 mdanderson.org 37 1 31426815 31426815 + Missense_Mutation SNP A A T rs2275741 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_014676 exon15 c.T2337A p.N779K ACTGCCATTCGTG 51 2 0.04 75 0 0 14 0 0.00 MACF1 23499 broad.mit.edu 37 1 39801335 39801335 + Silent SNP A A G novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b MACF1,NS,carcinoma,0,1 MACF1 . . . . TGAAAAAGGGAAA 211 6 0.03 284 0 0 909 1 0 0 COL9A2 1298 mdanderson.org 37 1 40775830 40775830 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001852 exon15 c.C745A p.H249N ATCCATGAGGGCC 28 3 0.11 52 0 0 3 0 0.00 NRD1 4898 bcgsc.ca 37 1 52255291 52255291 + Silent SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . NRD1 NM_002525 exon32 c.C3411A p.V1137V CCAGTTGACCAGG 47 4 0.09 81 0 0 89 215 0 0.00 DOCK7 85440 mdanderson.org 37 1 62970399 62970399 + Missense_Mutation SNP T T C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001271999 exon37 c.A4639G p.R1547G GAAGCCTGAGGCA 45 3 0.07 76 1 0.0131578947 14 0 0.00 STRIP1 85369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110596376 110596376 + Missense_Mutation SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_033088 exon21 c.G2356A p.A786T GACCGGGCCCACA 101 32 0.32 106 0 0 69 18 0.26 PTGFRN 5738 mdanderson.org 37 1 117487338 117487338 + Silent SNP G G C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_020440 exon3 c.G456C p.R152R CGCGCGGCCCCCG 28 9 0.32 44 6 0.1363636364 2 0 0.00 ADAMTSL4 54507 mdanderson.org 37 1 150530476 150530476 + Missense_Mutation SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_019032 exon14 c.C2233T p.H745Y ACCCAGCACCGCC 43 3 0.07 47 0 0 13 0 0.00 ZNF503 84858 mdanderson.org 37 10 77159069 77159069 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_032772 exon2 c.C1379A p.A460E AGCGCCGCAGCCG 26 3 0.12 24 0 0 1 0 0.00 DLG5 9231 mdanderson.org 37 10 79579175 79579175 + Missense_Mutation SNP A A G rs142466775 bycluster;byfrequency TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_004747 exon17 c.T3575C p.L1192P TTCCGCAGGATGG 38 3 0.08 57 0 0 0 36 0 0.00 MUC2 4583 mdanderson.org 37 11 1093210 1093210 + Missense_Mutation SNP G G C rs56396523 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_002457 exon30 c.G5029C p.A1677P CCAACAGCCATCA 16 5 0.31 22 5 0.2272727273 0 0 MUC2 4583 hgsc.bcm.edu 37 11 1093420 1093420 + Missense_Mutation SNP A A G novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b MUC2_ENST00000441003,NS,carcinoma,-2,2 MUC2_ENST00000441003 NM_002457 exon30 c.A5239G p.I1747V ACACCCATCACCA 35 2 0.06 51 2 0.0392156863 -2 2 0 0 FAR1 84188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 13743357 13743357 + Missense_Mutation SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_032228 exon10 c.C1208T p.T403I GGAATACTGAGAA 105 35 0.33 185 0 0 2 1 0.50 . 0 bcgsc.ca 37 11 50227517 50227517 + RNA SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . CACCGGCATTAGG 62 26 0.42 81 0 0 0 0 C11orf95 65998 mdanderson.org 37 11 63533331 63533331 + Silent SNP T T C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001144936 exon2 c.A585G p.E195E CTCCTCTTCTTCC 18 2 0.11 25 1 0.04 0 0 C11orf95 65998 broad.mit.edu;mdanderson.org 37 11 63533337 63533337 + RNA SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001144936 exon2 c.G579A p.E193E TTCTTCCTCCTCC 23 3 0.13 30 0 0 0 0 RNF169 254225 mdanderson.org 37 11 74521243 74521243 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001098638 exon3 c.G591T p.K197N AGAAAAGTTACAA 53 3 0.06 69 0 0 0 0 CEP164 22897 mdanderson.org 37 11 117263830 117263830 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001271933 exon19 c.G2613T p.Q871H AGAGCAGTATGAA 34 3 0.09 54 0 0 15 0 0.00 C11orf44 283171 mdanderson.org 37 11 130583145 130583145 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001271983 exon2 c.G267T p.Q89H GAGCCAGTGTGGG 29 3 0.10 39 0 0 0 0 . 0 broad.mit.edu 37 12 8363889 8363890 + RNA DEL AA AA - novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 AA AA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . TATATTAAGTTAC 17 5 0.29 9 0 0 0 0 . 0 broad.mit.edu 37 12 8363896 8363896 + RNA DEL A A - novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . AGTTACAATTAAT 16 5 0.31 7 0 0 0 0 TUBA1A 7846 bcgsc.ca 37 12 49580192 49580192 + Missense_Mutation SNP A A G rs16918521 byfrequency TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . TUBA1A NM_001270399 exon3 c.T276C p.L92L TGTGATAAGTTGC 140 12 0.09 185 6 0.0324324324 32 756 5 0.01 LRP1 4035 mdanderson.org 37 12 57588470 57588470 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_002332 exon50 c.G8179T p.E2727X GAGGACGAGACCC 34 3 0.09 40 0 0 19 0 0.00 P2RX7 5027 bcgsc.ca;mdanderson.org 37 12 121605293 121605293 + Silent SNP C C T rs147505804 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . P2RX7 NM_002562 exon8 c.C747T p.G249G TCAGGGCGGAATA 82 5 0.06 90 0 0 53 0 0 LATS2 26524 mdanderson.org 37 13 21562308 21562308 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_014572 exon4 c.C1611A p.C537X GCCTGCGCACAGG 41 3 0.07 55 0 0 4 0 0.00 ABCC4 10257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 95858899 95858899 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_005845 exon8 c.C1048A p.R350S ACACGCGGCTGGC 94 30 0.32 106 0 0 11 5 0.45 UPF3A 65110 mdanderson.org 37 13 115051797 115051797 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_023011 exon4 c.G442T p.V148L GCAGTGGTAGAGT 75 4 0.05 119 0 0 17 0 0.00 NPAS3 64067 mdanderson.org 37 14 34269689 34269689 + Missense_Mutation SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001164749 exon12 c.G2176A p.A726T GCGGCCGCCCGCA 39 3 0.08 32 0 0 0 0 GPR135 64582 mdanderson.org 37 14 59930940 59930940 + Silent SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_022571 exon1 c.C1005A p.I335I GATCATGATGAGG 32 3 0.09 28 0 0 0 0 UBR1 197131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43335557 43335557 + Missense_Mutation SNP T T C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_174916 exon15 c.A1705G p.K569E CAGCTTTGTGACA 170 33 0.19 155 0 0 6 1 0.17 MYH11 4629 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 16 15869978 15869978 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001040114 exon9 c.C867A p.H289Q AAAGATGTGGAAT 96 5 0.05 146 0 0 14 0 0.00 TCF25 22980 mdanderson.org 37 16 89965261 89965261 + Missense_Mutation SNP G G A rs139981645 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_014972 exon11 c.G1202A p.R401H TGATCCGCCTCTT 39 3 0.08 41 0 0 0 105 0 0.00 . 0 broad.mit.edu 37 17 21731270 21731270 + Missense_Mutation SNP T T C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b UBBP4_ENST00000584755,bladder,carcinoma,0,6 . . . . . CCCCGATCAGCAG 124 3 0.02 125 1 0.008 6 0 0 FLJ36000 0 broad.mit.edu 37 17 21906899 21906899 + RNA DEL C C - novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . ACCGGTCTTTGGT 12 2 0.17 29 0 0 0 0 SPAG5 10615 mdanderson.org 37 17 26905514 26905514 + Silent SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_006461 exon21 c.C3231A p.R1077R AAGTGAGCGGGTA 42 3 0.07 47 0 0 142 1 0.01 ZPBP2 124626 mdanderson.org 37 17 38028693 38028693 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b ZPBP2,NS,carcinoma,0,1 ZPBP2 NM_199321 exon5 c.G577T p.E193X TCTGTTGAAATTC 91 5 0.05 102 0 0 0 1 0 0 CASC3 22794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38318013 38318013 + Missense_Mutation SNP A A G novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b CASC3,NS,carcinoma,+1,1 CASC3 NM_007359 exon4 c.A305G p.E102G GTGAAGAAGGTGA 141 27 0.19 164 0 0 1 1 56 19 0.34 LRRC37A4P 0 broad.mit.edu 37 17 43591984 43591985 + RNA INS - - G rs368999726 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . GTCATGCGGAGCG 40 3 0.08 41 1 0.0243902439 3 0 0.00 KCNH6 81033 hgsc.bcm.edu 37 17 61622539 61622539 + Missense_Mutation SNP T T C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_030779 exon13 c.T2605C p.S869P CCTGCCTCCAATG 99 5 0.05 67 0 0 9 0 0.00 TMEM259 91304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1014364 1014364 + Missense_Mutation SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_033420 exon2 c.C334T p.R112C CCACACGCAGGAT 216 51 0.24 308 0 0 146 30 0.21 PRKCSH 5589 mdanderson.org 37 19 11546995 11546995 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001001329 exon2 c.G57T p.R19S CAAGAGGCCCCGG 43 3 0.07 33 0 0 382 1 0.00 CAPNS1 826 bcgsc.ca 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . CAPNS1 NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 118 8 0.07 150 4 0.0266666667 19 0 0 DMRTC2 63946 mdanderson.org 37 19 42352958 42352958 + Nonsense_Mutation SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001040283 exon5 c.G543A p.W181X ACACTGGCTGCCT 47 3 0.06 63 0 0 0 0 MEGF8 1954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42874860 42874860 + Missense_Mutation SNP A A T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001271938 exon40 c.A7013T p.N2338I TTGAAAACTGGGT 84 21 0.25 97 0 0 9 3 0.33 DHX34 9704 mdanderson.org 37 19 47876120 47876120 + Silent SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_014681 exon8 c.G1902A p.P634P GCGGCCGCTGGAG 42 3 0.07 50 0 0 23 0 0.00 GLTSCR2 29997 mdanderson.org 37 19 48258024 48258024 + Missense_Mutation SNP A A G novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_015710 exon8 c.A929G p.E310G AGGGGGAGCCAGG 23 3 0.13 35 0 0 1334 1 0.00 SHANK1 50944 mdanderson.org 37 19 51171612 51171612 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_016148 exon22 c.C3605A p.P1202Q ATGGCCGGGGCGG 13 2 0.15 13 0 0 0 0 SIGLECL1 284369 mdanderson.org 37 19 51768757 51768757 + Missense_Mutation SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_173635 exon3 c.G158A p.G53D TGGATGGCAGCCT 101 5 0.05 146 0 0 0 0 NBAS 51594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 15557681 15557681 + Silent SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_015909 exon24 c.C2733T p.D911D TTCAATGTCTTTC 260 59 0.23 262 0 0 15 2 0.13 RRBP1 6238 broad.mit.edu 37 20 17617269 17617269 + Missense_Mutation SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . RRBP1 NM_004587 exon6 c.G991A p.A331T AGCTGGCCTGCAT 52 4 0.08 42 0 0 157 143 0 0.00 BMP7 655 mdanderson.org 37 20 55841035 55841035 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001719 exon1 c.C144A p.S48R CTCCTGGCTGCGG 33 3 0.09 34 0 0 1 0 0.00 LAMA5 3911 mdanderson.org 37 20 60898602 60898602 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_005560 exon45 c.C5974A p.R1992S AGCCACGGCAGGC 45 3 0.07 54 0 0 13 0 0.00 TNFRSF6B 8771 mdanderson.org 37 20 62328205 62328205 + Missense_Mutation SNP G G A rs61760055 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_003823 exon1 c.G85A p.G29R GTACGCGGAGTGG 71 5 0.07 49 0 0 10 0 0.00 BAGE 85319 broad.mit.edu 37 21 11062214 11062214 + RNA DEL C C - novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . AAGAAACCCCCCA 7 3 0.43 4 0 0 0 0 SNAP29 9342 bcgsc.ca 37 22 21242096 21242096 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . SNAP29 NM_004782 exon5 c.G749T p.S250I TAAAAAGCACAGA 49 4 0.08 70 0 0 22 73 0 0.00 GGT5 2687 mdanderson.org 37 22 24628058 24628058 + Missense_Mutation SNP T T C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001099781 exon5 c.A715G p.R239G CCAGCCTCCCCGT 39 3 0.08 88 1 0.0113636364 18 0 0.00 RNF215 200312 mdanderson.org 37 22 30775729 30775729 + Missense_Mutation SNP G G T rs149275092 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001017981 exon8 c.C1082A p.T361N GGGCAGGTCTGCT 53 3 0.06 72 0 0 26 0 0.00 CMTM8 152189 broad.mit.edu 37 3 32280541 32280541 + Missense_Mutation SNP G G C novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . CMTM8 NM_178868 exon1 c.G77C p.S26T CCACCAGCAGCAG 178 4 0.02 260 0 0 9 2 0 0.00 SH3BP2 6452 mdanderson.org 37 4 2826352 2826352 + Silent SNP G G T rs149515000 alternate_allele TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001145856 exon4 c.G423T p.A141A GCGGGCGGCTGAG 42 3 0.07 48 0 0 5 0 0.00 MFSD10 10227 mdanderson.org 37 4 2933865 2933865 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001146069 exon7 c.C709A p.L237M ACCCCAGGGCGAT 10 2 0.20 31 0 0 27 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599321 55599321 + Missense_Mutation SNP A A T rs121913507 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b KIT,colon,carcinoma,+1,932 KIT NM_000222 exon17 c.A2447T p.D816V CCAGAGACATCAA 61 36 0.59 96 0 0 1 932 50 50 1.00 DMP1 1758 mdanderson.org 37 4 88583550 88583550 + Missense_Mutation SNP G G A rs200520896 by1000genomes TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_004407 exon6 c.G620A p.G207D GAGACGGCTCCGA 33 3 0.09 60 0 0 0 0 0 . 0 broad.mit.edu 37 4 118496039 118496040 + RNA INS - - A rs375830371 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . TTTTTTTAATGGG 7 4 0.57 8 0 0 5 0 0.00 SPCS3 60559 broad.mit.edu 37 4 177248366 177248366 + Silent SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . SPCS3 NM_021928 exon4 c.G348A p.P116P TAATCCGAAGCTG 298 6 0.02 474 0 0 15 18 0 0.00 GRIA1 2890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 153149891 153149891 + Missense_Mutation SNP G G A rs370642711 TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b GRIA1_ENST00000544403,NS,carcinoma,0,3 GRIA1_ENST00000544403 NM_001258021 exon13 c.G2216A p.R739Q AGCAGCGGAAACC 147 36 0.24 198 1 0.0050505051 0 3 0 0 PANK3 79646 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 167995711 167995711 + Silent SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . PANK3 NM_024594 exon2 c.G321A p.L107L CGTCTGCAATGTT 75 5 0.07 88 0 0 39 8 0 0.00 DNAH8 1769 mdanderson.org 37 6 38881682 38881682 + Missense_Mutation SNP C C T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001206927 exon67 c.C9917T p.A3306V ATCTTGCAGTCAA 116 5 0.04 150 1 0.0066666667 0 0 . 378108 broad.mit.edu 37 7 72436666 72436666 + Missense_Mutation SNP A A G rs73702636 TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b TRIM74,NS,carcinoma,0,1 . . . . . AGCTCCAGCAGGC 120 6 0.05 115 2 0.0173913043 1 0 0 GPR22 2845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107115390 107115390 + Silent SNP G G A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_005295 exon3 c.G885A p.R295R CCTCCGGCGAGCT 303 59 0.19 215 0 0 0 0 C7orf60 154743 broad.mit.edu 37 7 112462251 112462251 + Silent SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b C7orf60,NS,carcinoma,0,1 C7orf60 NM_152556 exon5 c.C766A p.R256R TCCATCGCTGGTA 115 3 0.03 91 0 0 55 1 14 0 0.00 AGO2 27161 broad.mit.edu;mdanderson.org 37 8 141561493 141561493 + Silent SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b EIF2C2,NS,carcinoma,0,1 . NM_012154 exon11 c.C1312A p.R438R TGTTCCGCATGTC 76 4 0.05 94 0 0 1 4 0 0.00 AQP7 364 bcgsc.ca 37 9 33385733 33385733 + Missense_Mutation SNP C C T rs201117022 bycluster TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b AQP7,head_neck,carcinoma,0,1 AQP7 NM_001170 exon7 c.G657A p.M219I TGTGTTCATGCCA 42 10 0.24 38 1 0.0263157895 58 1 2 0 0.00 . 0 bcgsc.ca 37 9 77550214 77550214 + RNA SNP C C A novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . . . . . CACATGCAGCACA 26 4 0.15 35 0 0 0 0 SLC34A3 142680 mdanderson.org 37 9 140128577 140128577 + Silent SNP G G T rs34664302 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_080877 exon10 c.G942T p.A314A GTTTGCGGGCACG 17 2 0.12 16 0 0 0 0 GPM6B 2824 mdanderson.org 37 X 13825789 13825789 + Missense_Mutation SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . . NM_001001996 exon2 c.C161A p.A54D GGGCTAGCCCTGT 117 5 0.04 107 0 0 0 0 DLG3 1741 broad.mit.edu 37 X 69713237 69713237 + Silent SNP G G T novel TCGA-XE-AANR-01A-11D-A435-10 TCGA-XE-AANR-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13cd0963-4be6-4087-b13b-50df1732c263 b4cb7d5c-2f34-456b-a858-320fde2a5f2b . DLG3 NM_020730 exon7 c.G774T p.T258T CAAAACGAAACGT 290 4 0.01 252 0 0 100 76 0 0.00