Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MTHFR 4524 mdanderson.org 37 1 11854012 11854012 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_005957 exon9 c.C1482A p.S494S GGGGTCGGAGGAC 34 3 0.09 46 0 0 21 0 0.00 TMEM53 79639 broad.mit.edu 37 1 45120704 45120704 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . TMEM53 NM_024587 exon3 c.C361A p.R121S CGTAGCGGTACAG 70 3 0.04 66 0 0 40 49 0 0.00 KCNN3 3782 hgsc.bcm.edu 37 1 154842235 154842236 + In_Frame_Ins INS - - GCTGCTGCTGCTGCT rs66925179 TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . KCNN3 NM_001204087 exon1 c.206_207insAGCAGCAGCAGCAGC p.Q69delinsQQQQQQ TGCTGCTGCTGCT 70 14 0.20 66 0 0 141 15 0 0.00 MIR548F1 100302192 hgsc.bcm.edu 37 1 186120944 186120944 + RNA SNP A A C novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . . . . . AGAAAAATACGTG 106 24 0.23 127 0 0 0 0 PM20D1 148811 mdanderson.org 37 1 205814017 205814017 + Silent SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_152491 exon4 c.G498A p.L166L GGCCTGCAGTAAT 35 3 0.09 37 0 0 0 0 OR13G1 441933 mdanderson.org 37 1 247835618 247835618 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 OR13G1,NS,malignant_melanoma,0,2 OR13G1 NM_001005487 exon1 c.C726A p.L242L CACTGTGAGATGA 68 4 0.06 105 0 0 0 2 0 0 VCL 7414 broad.mit.edu 37 10 75854211 75854211 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . VCL NM_003373 exon11 c.G1535A p.R512H ATGACCGTGGAGT 154 4 0.03 178 1 0.0056179775 77 49 0 0.00 KIF20B 9585 broad.mit.edu 37 10 91497687 91497687 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 KIF20B,colon,carcinoma,-1,1 KIF20B NM_016195 exon20 c.G2969T p.G990V TTTTAGGTAATGA 150 5 0.03 141 0 0 191 1 29 0 0.00 MUC5B 727897 mdanderson.org 37 11 1247926 1247926 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 MUC5B,colon,carcinoma,+1,2 MUC5B NM_002458 exon4 c.G281A p.R94H TCTTCCGCTTCCC 52 3 0.06 89 0 0 1 2 0 0 DUSP8 1850 mdanderson.org 37 11 1579076 1579076 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_004420 exon6 c.G769A p.A257T CGATGGCGATGGT 49 3 0.06 65 0 0 5 0 0.00 ART5 116969 mdanderson.org 37 11 3661510 3661510 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001079536 exon3 c.C149T p.A50V GGGGCTGCCTTCT 60 5 0.08 99 0 0 39 0 0.00 CCKBR 887 mdanderson.org 37 11 6290931 6290931 + Missense_Mutation SNP G G T rs141038981 bycluster;by1000genomes TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 CCKBR_ENST00000525462,NS,carcinoma,-1,4 CCKBR_ENST00000525462 NM_176875 exon2 c.G184T p.A62S CTTTACGCAGTGA 46 3 0.07 88 0 0 -1 4 2 0 0.00 STX5 6811 mdanderson.org 37 11 62594629 62594629 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_003164 exon5 c.C421A p.Q141K TCACCTGTTTGAT 32 3 0.09 61 0 0 27 0 0.00 NRXN2 9379 mdanderson.org 37 11 64428409 64428409 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015080 exon10 c.C2001A p.S667R GTCTCGGCTACGC 46 4 0.09 67 0 0 82 0 0.00 ATG2A 23130 mdanderson.org 37 11 64668089 64668089 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015104 exon31 c.C4341A p.G1447G TGAGAGGCCAGTT 23 3 0.13 28 0 0 228 0 0.00 SPTBN2 6712 mdanderson.org 37 11 66468434 66468434 + Missense_Mutation SNP C C A rs199703911 alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_006946 exon16 c.G3136T p.G1046C CCCAGCCGGTCTG 16 2 0.13 35 0 0 14 0 0.00 RHOD 29984 mdanderson.org 37 11 66837951 66837951 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_014578 exon4 c.G386T p.C129F TGGGCTGCAAGAC 50 3 0.06 72 0 0 15 0 0.00 ALG8 79053 bcgsc.ca;mdanderson.org 37 11 77825007 77825007 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . ALG8 NM_024079 exon7 c.C702A p.S234R AACAAAGCTGAAA 87 5 0.06 184 0 0 54 34 0 0.00 ALG9 79796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 111728380 111728380 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001077690 exon7 c.G646A p.V216M CCAGCACAGCAAT 37 14 0.38 75 0 0 28 21 0.75 CEP164 22897 bcgsc.ca 37 11 117263330 117263330 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . CEP164 NM_001271933 exon18 c.G2489T p.G830V TGGCTGGGTATGA 48 4 0.08 119 0 0 121 12 0 0.00 VSIG2 23584 mdanderson.org 37 11 124621416 124621416 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_014312 exon2 c.C122A p.A41D AGCTCGGCTGTCT 20 3 0.15 34 0 0 3 0 0.00 MAGOHB 55110 broad.mit.edu 37 12 10762454 10762454 + Silent SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . MAGOHB NM_018048 exon3 c.T240C p.P80P AGGGGGAGGCCAC 125 4 0.03 74 0 0 17 240 0 0.00 DDX11 1663 ucsc.edu 37 12 31244689 31244689 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . DDX11 NM_030653 exon10 c.G1126A p.A376T CATGCGGCCACTC 173 23 0.13 112 11 0.0982142857 188 138 36 0.26 ASIC1 41 broad.mit.edu;mdanderson.org 37 12 50471790 50471790 + Silent SNP G G T rs149521223 bycluster;byfrequency;alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 ACCN2,NS,carcinoma,0,1 . NM_001256830 exon3 c.G819T p.T273T CGAGACGTCCTTC 77 4 0.05 72 0 0 1 13 0 0.00 KRT82 3888 mdanderson.org 37 12 52790015 52790015 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_033033 exon7 c.G1070A p.R357H TTGCAGCGCTGTG 18 2 0.11 24 0 0 0 0 NTN4 59277 broad.mit.edu 37 12 96180865 96180865 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . NTN4 NM_021229 exon2 c.G437A p.R146H TGGGAGCGGTCCA 83 3 0.04 112 1 0.0089285714 67 3 0 0.00 SACS 26278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 23909357 23909357 + Missense_Mutation SNP G G C novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_014363 exon10 c.C8658G p.H2886Q TGCAAAGTGGCCA 82 27 0.33 100 0 0 19 9 0.47 KIF26A 26153 mdanderson.org 37 14 104643748 104643748 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015656 exon12 c.G4623T p.G1541G GGCCGGGCCCAGT 19 2 0.11 12 0 0 172 1 0.01 GOLGA8DP 0 broad.mit.edu 37 15 22714031 22714032 + RNA INS - - A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . . . . . TGGCTAGAAAAAA 10 6 0.60 6 0 0 0 0 GABRB3 2562 mdanderson.org 37 15 26812790 26812790 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 GABRB3_ENST00000541819,colon,carcinoma,+1,7 GABRB3_ENST00000541819 NM_021912 exon7 c.C773A p.T258K AGAATCGTTATCA 53 3 0.06 59 0 0 1 7 7 0 0.00 SPTBN5 51332 mdanderson.org 37 15 42177937 42177937 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_016642 exon7 c.C1411A p.R471S ACCTGCGGGCCAC 26 3 0.12 38 0 0 0 0 TTBK2 146057 mdanderson.org 37 15 43067340 43067340 + Missense_Mutation SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_173500 exon13 c.T1991C p.L664P GCTGTAAGGGGTC 22 3 0.14 32 0 0 3 0 0.00 ARID3B 10620 broad.mit.edu 37 15 74836313 74836313 + Silent SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 ARID3B,rectum,carcinoma,0,2 ARID3B NM_006465 exon2 c.G36A p.Q12Q GCAGCAGCAACAA 107 5 0.05 110 0 0 35 2 42 0 0.00 . 0 bcgsc.ca 37 15 90479942 90479942 + RNA SNP C C A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . . . . . CATAGGCCTGCAA 24 4 0.17 37 0 0 0 0 ZNF710 374655 mdanderson.org 37 15 90617483 90617483 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_198526 exon4 c.G1786T p.V596F ATGAAGGTCAAGC 46 3 0.07 62 0 0 61 0 0.00 SV2B 9899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 91810817 91810817 + Silent SNP G G T rs368688126 alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_014848 exon9 c.G1152T p.G384G GATGGGGCCCTAC 133 39 0.29 192 0 0 1 1 1.00 CACNA1H 8912 broad.mit.edu 37 16 1245464 1245464 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . CACNA1H NM_021098 exon4 c.G444T p.A148A TTTTGCGGTGGAG 63 3 0.05 156 0 0 317 4 0 0.00 SPSB3 90864 mdanderson.org 37 16 1828458 1828458 + Silent SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_080861 exon3 c.C282T p.C94C GCAGCGGCAGTCC 35 3 0.09 45 0 0 119 0 0.00 C16orf89 146556 hgsc.bcm.edu 37 16 5106086 5106086 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001098514 exon5 c.C731A p.A244D GGGTAGGCGTATC 88 4 0.05 123 0 0 0 0 SNX29P2 440352 hgsc.bcm.edu 37 16 29375983 29375983 + RNA SNP T T C novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . . . . . TTTTTTTTCTTTT 82 4 0.05 95 0 0 0 0 ADCY7 113 ucsc.edu 37 16 50327364 50327364 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . ADCY7 NM_001114 exon5 c.C787T p.P263S TGCATGCCTGACA 45 4 0.09 107 1 0.0093457944 90 15 0 0.00 DHX38 9785 mdanderson.org 37 16 72141698 72141698 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_014003 exon21 c.G2964T p.K988N GCCCAAGGTGGGG 44 3 0.07 39 0 0 113 0 0.00 GSG2 83903 mdanderson.org 37 17 3627691 3627691 + Silent SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_031965 exon1 c.C462T p.G154G GTGCGGCCAGCCC 45 3 0.07 56 0 0 20 0 0.00 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3999200 3999200 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015113 exon11 c.C1838T p.A613V TCTTCCGCACAAA 118 30 0.25 132 0 0 39 11 0.28 MRPL45P2 0 broad.mit.edu 37 17 45567245 45567246 + RNA INS - - A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . . . . . CCATCTCAAAAAA 6 3 0.50 6 0 0 0 0 CDK5RAP3 80279 mdanderson.org 37 17 46052882 46052882 + Silent SNP C C A rs369343510 alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 CDK5RAP3,NS,carcinoma,0,1 CDK5RAP3 NM_176096 exon7 c.C516A p.G172G CTAGGGCGAAAAT 13 3 0.23 17 0 0 0 1 313 0 0.00 CACNA1G 8913 mdanderson.org 37 17 48697094 48697094 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_198385 exon34 c.G5832T p.E1944D CCTGGAGTGGGAG 24 3 0.13 36 0 0 1 0 0.00 PGS1 9489 broad.mit.edu 37 17 76411043 76411043 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . PGS1 NM_024419 exon8 c.C1486T p.R496W GTTCACCGGGACC 85 4 0.05 105 0 0 30 99 0 0.00 RNF213 57674 broad.mit.edu 37 17 78313950 78313951 + In_Frame_Ins INS - - GGTCTGTGA novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . RNF213 NM_001256071 exon26 c.5783_5784insGGTCTGTGA p.M1928delinsMVCE TCGTCATGGTCTG 72 8 0.11 87 0 0 766 23 0 0.00 B3GNTL1 146712 broad.mit.edu 37 17 81006578 81006578 + Silent SNP G G T rs368812056 TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . B3GNTL1 NM_001009905 exon2 c.C144A p.T48T CTCCATGGTACCT 97 3 0.03 134 0 0 40 3 0 0.00 C19orf21 126353 mdanderson.org 37 19 758104 758104 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_173481 exon2 c.G1158T p.Q386H TCCCCAGCCCGGA 35 3 0.09 48 0 0 0 0 KDM4B 23030 mdanderson.org 37 19 5131404 5131404 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015015 exon12 c.G1633T p.V545L GAGCACGTGTCCT 41 3 0.07 76 0 0 33 0 0.00 AP1M1 8907 mdanderson.org 37 19 16337286 16337286 + Nonsense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001130524 exon7 c.C637T p.R213X AAGATGCGAGTCT 25 3 0.12 29 0 0 179 0 0.00 F2RL3 9002 mdanderson.org 37 19 17000758 17000758 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_003950 exon2 c.G484T p.G162C ATGTATGGCTCAG 21 3 0.14 30 0 0 0 0 SRRM5 100170229 mdanderson.org 37 19 44116881 44116881 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001145641 exon1 c.G608T p.G203V GCTCAGGTATAGG 35 3 0.09 43 0 0 6 0 0.00 ZNF233 353355 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 44778517 44778517 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001207005 exon5 c.G1704T p.V568V TGATGTGTGTGGG 96 19 0.20 94 0 0 14 2 0.14 PPP5D1 100506012 ucsc.edu;bcgsc.ca 37 19 47028997 47028997 + Missense_Mutation SNP C C A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001205281 exon3 c.G280T p.V94L TTGTCACTTTGTC 18 4 0.22 43 0 0 1 0 0.00 EPS8L1 54869 mdanderson.org 37 19 55593969 55593969 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 EPS8L1_ENST00000310075,colon,carcinoma,0,3 EPS8L1_ENST00000310075 NM_133180 exon12 c.G1213T p.G405W CGCCCCGGGTGAG 48 3 0.06 53 0 0 0 3 24 0 0.00 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32690161 32690161 + Missense_Mutation SNP C C T rs368963586 alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 BIRC6_ENST00000421745,NS,carcinoma,+2,2 BIRC6_ENST00000421745 NM_016252 exon26 c.C5285T p.A1762V CCCTTGCAATTTC 567 118 0.21 575 0 0 2 2 167 49 0.29 ABCG8 64241 mdanderson.org 37 2 44071743 44071743 + Missense_Mutation SNP A A T rs4148211 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_022437 exon2 c.A161T p.Y54F TCAACTACCAGGT 48 2 0.04 58 0 0 0 0 SMPD4 55627 ucsc.edu 37 2 130910188 130910188 + Silent SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . SMPD4 NM_017951 exon20 c.T2541C p.Y847Y GAGGACATAGCCC 107 2 0.02 86 0 0 67 393 42 0.11 rescued with RNA-seq ITGA4 3676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 182358131 182358131 + Silent SNP G G A rs368002151 TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_000885 exon11 c.G1233A p.S411S GATCTCGTCAACC 90 12 0.13 98 0 0 20 0 0.00 ADRA1D 146 mdanderson.org 37 20 4202383 4202383 + Silent SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_000678 exon2 c.G1506A p.P502P CCGGAACGGCCCC 22 2 0.09 30 0 0 0 0 JPH2 57158 mdanderson.org 37 20 42788659 42788659 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_020433 exon2 c.C768A p.G256G GCTGGCGCCCGAG 23 3 0.13 17 0 0 0 0 RBBP8NL 140893 mdanderson.org 37 20 60988512 60988512 + Silent SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_080833 exon11 c.T1620C p.P540P GTGGGGAGGTGGC 22 3 0.14 38 0 0 0 0 TRMT2A 27037 mdanderson.org 37 22 20102547 20102547 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001257994 exon5 c.C946A p.L316M CAGTCAGCTGCTT 36 3 0.08 46 0 0 69 0 0.00 TRMT2A 27037 mdanderson.org 37 22 20104077 20104077 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001257994 exon2 c.C83A p.T28N GAGACGGTAGGGC 33 3 0.09 42 0 0 34 0 0.00 DEPDC5 9681 mdanderson.org 37 22 32218702 32218702 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_014662 exon24 c.G2030T p.G677V AGCCTGGTGACGG 48 3 0.06 70 0 0 28 0 0.00 VILL 50853 mdanderson.org 37 3 38038598 38038598 + Missense_Mutation SNP G G T rs199511941 bycluster;by1000genomes;alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015873 exon5 c.G481T p.G161C AATAAGGGTGACA 39 3 0.08 81 0 0 1 0 0.00 NBEAL2 23218 mdanderson.org 37 3 47039154 47039154 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015175 exon20 c.G2928T p.G976G CCAGGGGCCTGCC 36 3 0.08 76 1 0.0131578947 37 0 0.00 DHX30 22907 bcgsc.ca 37 3 47887257 47887257 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . DHX30 NM_138615 exon10 c.G1007T p.R336L CTTTGCGTGAGCT 51 4 0.08 112 0 0 101 183 0 0.00 FAM194A 131831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 150396273 150396273 + Missense_Mutation SNP C C A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_152394 exon10 c.G1180T p.D394Y CAATGTCATCAAT 377 49 0.13 261 0 0 0 0 OTUD4 54726 broad.mit.edu 37 4 146059041 146059041 + Silent SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 OTUD4,bladder,carcinoma,0,2 OTUD4 NM_001102653 exon21 c.T2691C p.H897H GGGAGGATGAGCC 82 5 0.06 126 2 0.0158730159 120 2 112 0 0.00 ZNF827 152485 mdanderson.org 37 4 146823705 146823705 + Nonsense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 ZNF827,NS,carcinoma,+1,4 ZNF827 NM_178835 exon2 c.C706T p.R236X CAAATCGCATGGT 32 3 0.09 48 0 0 1 4 5 0 0.00 PPWD1 23398 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 64867809 64867809 + Missense_Mutation SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015342 exon5 c.A665G p.H222R AACTCCATACATC 195 68 0.35 186 0 0 133 79 0.59 SGTB 54557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 65004355 65004355 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 SGTB,trunk,malignant_melanoma,0,1 SGTB NM_019072 exon4 c.C235T p.P79S CTTCAGGCACTGA 72 30 0.42 100 0 0 0 1 39 20 0.51 C5orf56 441108 mdanderson.org 37 5 131811383 131811383 + RNA SNP G G C novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . . . . . ACAGCCGGGCCTT 40 3 0.08 67 0 0 25 0 0.00 FBXW11 23291 mdanderson.org 37 5 171303295 171303295 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_012300 exon8 c.C1152A p.T384T TTTGATGGTCCTG 42 3 0.07 55 0 0 95 0 0.00 PPT2 9374 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 32123529 32123533 + Frame_Shift_Del DEL CCTCT CCTCT - novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 CCTCT CCTCT Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . PPT2 NM_138717 exon4 c.419_423del p.140_141del CATCTCCCTCTCC 145 20 0.14 187 0 0 19 89 0 0.00 RNF8 9025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 37336599 37336599 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_003958 exon3 c.G580A p.E194K AAAGGTGAAGTGG 121 25 0.21 141 0 0 91 35 0.38 C6orf141 135398 broad.mit.edu 37 6 49519197 49519197 + Missense_Mutation SNP T T G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . C6orf141 NM_001145652 exon1 c.T692G p.V231G GGAGGGTTTCACC 97 14 0.14 84 8 0.0952380952 7 0 0 MCM3 4172 mdanderson.org 37 6 52141891 52141891 + Missense_Mutation SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_002388 exon8 c.C1274T p.A425V ACAGCAGCCGTCA 28 3 0.11 55 0 0 214 0 0.00 KIAA1586 57691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56919177 56919177 + Missense_Mutation SNP T T A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_020931 exon4 c.T1880A p.I627N AAGATATTTTTAA 202 37 0.18 237 0 0 17 5 0.29 EYS 346007 mdanderson.org 37 6 65016865 65016865 + Nonsense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001142800 exon30 c.C6189A p.C2063X TTACCTGCAATTG 39 3 0.08 58 0 0 0 0 HECA 51696 mdanderson.org 37 6 139487973 139487973 + Missense_Mutation SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_016217 exon2 c.C824T p.T275M CACCCACGGGCTA 29 3 0.10 57 0 0 40 0 0.00 RSPH10B 222967 broad.mit.edu 37 7 5983086 5983086 + Nonsense_Mutation SNP G G A rs142698648 bycluster;byfrequency TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . RSPH10B NM_173565 exon15 c.C1627T p.Q543X GCTGTTGCTCACG 1410 98 0.07 1154 2 0.0017331023 28 12 0 0.00 SLC12A9 56996 ucsc.edu;bcgsc.ca 37 7 100458762 100458762 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . SLC12A9 NM_001267812 exon10 c.G1221T p.L407L CCAGCTGGTGCTC 39 4 0.10 72 0 0 81 44 0 0.00 PLXNA4 91584 broad.mit.edu 37 7 131817901 131817901 + Nonsense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . PLXNA4 NM_020911 exon31 c.C5496A p.Y1832X AGCCAGGTATGCG 59 3 0.05 95 0 0 873 2 0 0.00 ABCF2 10061 mdanderson.org 37 7 150913107 150913107 + Silent SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 ABCF2,NS,carcinoma,-1,1 ABCF2 NM_007189 exon12 c.C1347A p.P449P ATCTGTGGGTAGT 44 3 0.07 64 0 0 -1 1 133 0 0.00 MNX1 3110 bcgsc.ca 37 7 156802391 156802391 + Silent SNP G G A novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . MNX1 NM_005515 exon1 c.C654T p.T218T GCCCGCGGTGGAC 29 4 0.14 43 0 0 17 49 0 0.00 SPAG1 6674 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 101232531 101232532 + Frame_Shift_Del DEL TA TA - novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 TA TA Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . SPAG1 NM_172218 exon13 c.1559_1560del p.520_520del ATTCTCTATGAAA 108 15 0.14 124 0 0 80 18 0 0.00 MYC 4609 mdanderson.org 37 8 128750607 128750607 + Missense_Mutation SNP G G C rs61752959 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 MYC,trunk,malignant_melanoma,0,1 MYC NM_002467 exon2 c.G144C p.Q48H CTACCAGCAGCAG 60 5 0.08 56 2 0.0357142857 0 1 64 0 0.00 FAM205A 259308 ucsc.edu 37 9 34726204 34726204 + Missense_Mutation SNP G G A rs521574 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . FAM205A NM_001141917 exon4 c.C1033T p.P345S CCTGAGGAGTATT 78 26 0.33 216 10 0.0462962963 45 0 0 LMX1B 4010 hgsc.bcm.edu;mdanderson.org 37 9 129455807 129455807 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 LMX1B_ENST00000355497,bladder,carcinoma,0,2 LMX1B_ENST00000355497 NM_001174146 exon5 c.G746T p.R249L AGGTCCGAGAGAC 64 4 0.06 51 0 0 0 2 1 0 0.00 FNBP1 23048 mdanderson.org 37 9 132678245 132678245 + Silent SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_015033 exon11 c.G1185A p.L395L GCTTACCAGCTTG 41 3 0.07 46 0 0 8 0 0.00 DNLZ 728489 mdanderson.org 37 9 139256497 139256497 + Silent SNP A A G novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_001080849 exon3 c.T504C p.G168G GGGGGGACCCTCA 42 3 0.07 59 0 0 162 3 0.02 ND5 4540 broad.mit.edu 37 MT 13947 13947 + Silent SNP C C T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . ENST00000361567 exon1 c.C1611T p.I537I CACAATCCCCTAT 4 3 0.75 17 0 0 0 0 RBM3 5935 mdanderson.org 37 X 48434941 48434941 + Missense_Mutation SNP G G T novel TCGA-WZ-A7V3-01A-11D-A435-10 TCGA-WZ-A7V3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e7dff85e-11f0-4bd7-b76d-49ac37ad49f1 8fe77e51-5995-4d50-8699-6641bb60ad64 . . NM_006743 exon5 c.G362T p.R121L ACAGTCGACCTGG 47 3 0.06 47 0 0 2391 2 0.00