Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV . 339457 ucsc.edu 37 1 1855319 1855319 + Missense_Mutation SNP C C T rs2295362 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GACGCCCTTGACG 116 14 0.12 115 3 0.0260869565 0 0 . 339457 bcgsc.ca 37 1 1859176 1859176 + Missense_Mutation SNP T T C rs45489198 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCATATTCTTTCG 39 5 0.13 57 0 0 0 0 . 284498 bcgsc.ca 37 1 11835556 11835556 + Missense_Mutation SNP C C T rs41275456 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTGACCGCCGGA 137 8 0.06 166 0 0 0 0 . 284498 bcgsc.ca 37 1 11836628 11836628 + Missense_Mutation SNP T T C rs6699881 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCCTGCTGGACAC 104 5 0.05 180 0 0 0 0 . 284498 bcgsc.ca;mdanderson.org 37 1 11836670 11836670 + Silent SNP C C A rs41275458 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AAGATGCGGCTTT 172 17 0.10 248 0 0 0 0 . 284498 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11838762 11838762 + Silent SNP G G A rs72640211 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGCCTGAGATGG 138 13 0.09 189 0 0 0 0 . 284498 bcgsc.ca;mdanderson.org 37 1 11838841 11838841 + Missense_Mutation SNP A A G rs56001051 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCACTGAGCAGCA 227 15 0.07 310 0 0 1 0 0.00 . 284498 bcgsc.ca 37 1 11839009 11839009 + Silent SNP C C T rs55685198 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCCGGACACTCTC 139 7 0.05 201 0 0 0 0 . 0 bcgsc.ca 37 1 12898045 12898045 + RNA SNP G G A rs10158988 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGGACCGAAGAAG 72 15 0.21 108 0 0 0 0 . 0 bcgsc.ca 37 1 12898378 12898378 + RNA SNP C C G rs57957396 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCAGCCCTAATTG 167 10 0.06 233 0 0 0 0 . 0 bcgsc.ca 37 1 12898445 12898445 + RNA SNP C C A rs11121996 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGGATCCATGTC 184 20 0.11 276 0 0 0 0 PRAMEF8 441871 bcgsc.ca;mdanderson.org 37 1 12980150 12980150 + Missense_Mutation SNP A A G rs141480481 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001012276 exon4 c.A1342G p.I448V CCCAAGATCATTG 318 24 0.08 366 0 0 0 0 LOC440563 0 bcgsc.ca 37 1 13183615 13183615 + RNA SNP T T C rs200176197 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001136561 exon2 c.A258G p.A86A TGGCTCTGCAGCC 174 16 0.09 201 9 0.0447761194 1 0 0.00 . 0 bcgsc.ca 37 1 45457681 45457681 + RNA SNP G G A rs12126314 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTCGCGGAACAG 57 4 0.07 54 0 0 5 0 0.00 . 729779 bcgsc.ca 37 1 79520923 79520923 + RNA SNP T T C rs17131734 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGATTTGATGGA 36 6 0.17 55 0 0 1 0 0.00 LOC100129138 0 bcgsc.ca 37 1 104615959 104615959 + RNA SNP A A G rs3811506 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACAAGCAGCCATC 105 13 0.12 111 0 0 7 0 0.00 . 0 bcgsc.ca 37 1 111391513 111391513 + RNA SNP C C T rs12750061 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTGCTCGTCTGC 24 4 0.17 35 0 0 0 0 . 100132332 bcgsc.ca 37 1 116107337 116107337 + RNA SNP T T A rs55771787 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTATGGTCACCGA 51 5 0.10 58 0 0 1 1 1.00 . 0 bcgsc.ca 37 1 146522606 146522606 + RNA SNP T T C rs521687 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTCTCTAAAAAG 158 22 0.14 168 1 0.005952381 8 0 0.00 . 0 bcgsc.ca 37 1 146522686 146522686 + RNA SNP C C T rs522558 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTTTGGCTCAATA 109 18 0.17 93 1 0.0107526882 27 0 0.00 . 0 bcgsc.ca 37 1 146523670 146523670 + RNA SNP T T C rs594716 byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGATGGTCATCAT 61 9 0.15 45 0 0 0 0 . 0 bcgsc.ca 37 1 147313509 147313509 + RNA SNP C C T rs146788179 by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GACTGTCCAAGGA 156 11 0.07 153 0 0 0 0 . 0 bcgsc.ca 37 1 148193730 148193730 + RNA SNP G G A rs61811779 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGTCGGGAATTCC 261 17 0.07 226 0 0 110 0 0.00 . 0 bcgsc.ca 37 1 157029199 157029199 + RNA SNP A A G rs11264607 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGATCCATTCACC 146 17 0.12 119 0 0 41 0 0.00 . 0 bcgsc.ca 37 1 158424637 158424637 + RNA SNP A A C rs1844787 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTTGTAGGTCAG 60 11 0.18 82 0 0 0 0 . 0 bcgsc.ca 37 1 158493554 158493554 + RNA SNP A A G rs6656837 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GATGTCACTGATC 49 4 0.08 60 0 0 1 0 0.00 . 0 bcgsc.ca 37 1 158493726 158493726 + RNA SNP C C T rs7548349 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAAACCCTCACTA 36 7 0.19 41 0 0 0 0 . 0 bcgsc.ca 37 1 158493852 158493852 + RNA SNP A A T rs7514968 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTATGATTGGCC 73 10 0.14 70 0 0 0 0 . 0 bcgsc.ca 37 1 158493890 158493890 + RNA SNP G G C rs7525362 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTATTTGGTTGCC 67 8 0.12 61 0 0 0 0 . 0 bcgsc.ca 37 1 158494110 158494110 + RNA SNP A A G rs7515245 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TATCCCATTACTC 44 5 0.11 51 0 0 36 1 0.03 . 0 bcgsc.ca 37 1 158494693 158494693 + RNA SNP A A G rs12145401 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGGAAAAATTTG 68 13 0.19 41 0 0 0 0 . 0 bcgsc.ca 37 1 158495209 158495209 + RNA SNP C C T rs6699473 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTGTGCCAAACT 69 10 0.14 62 0 0 29 29 1.00 . 0 bcgsc.ca 37 1 158495431 158495431 + RNA SNP G G A rs6674656 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGGTCGTCTTGC 57 6 0.11 59 0 0 0 0 OR10X1 128367 bcgsc.ca 37 1 158549420 158549421 + Missense_Mutation DNP CG CG TA novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CG CG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a OR10X1,face,carcinoma,-1,1 OR10X1 NM_001004477 exon1 c.C269T p.T90I GGTCAGCGTATAG 151 7 0.05 126 1 0.0079365079 96 1 0 0 UAP1 6675 ucsc.edu 37 1 162549362 162549362 + Missense_Mutation SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . UAP1 NM_003115 exon4 c.G630T p.L210F TATTTTGGAAGAG 43 4 0.09 51 0 0 47 98 0 0.00 . 677790 broad.mit.edu;bcgsc.ca 37 1 229385670 229385671 + Frame_Shift_Del DEL TC TC - rs140311590 bycluster;alternate_allele TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 TC TC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTCTTTCTCTCT 12 6 0.50 29 0 0 0 0 . 0 bcgsc.ca 37 1 236274147 236274147 + RNA SNP G G A rs7516388 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTGGCGTAGACT 42 5 0.12 38 0 0 1 0 0.00 . 0 bcgsc.ca 37 1 240136252 240136252 + RNA SNP C C T rs72762530 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACTGGCCGACTGG 50 6 0.12 34 0 0 0 0 . 388761 bcgsc.ca;mdanderson.org 37 1 247886493 247886493 + Missense_Mutation SNP G G A rs62619787 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTACAGGGTTAAA 171 12 0.07 220 0 0 0 0 . 388761 bcgsc.ca 37 1 247886949 247886949 + Missense_Mutation SNP T T C rs36075193 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCATGATTACCTC 122 8 0.07 134 0 0 0 0 . 148818 bcgsc.ca 37 1 247991516 247991516 + RNA SNP C C G rs6698863 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGCCACTAATAT 58 5 0.09 72 0 0 0 0 . 0 bcgsc.ca 37 10 8203302 8203302 + RNA SNP T T C rs2664906 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTCGAATGCGAAT 40 4 0.10 55 0 0 0 0 MYO3A 53904 ucsc.edu;bcgsc.ca 37 10 26357747 26357748 + Missense_Mutation DNP CG CG TA novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CG CG Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . MYO3A NM_017433 exon12 c.G1105A p.V369I GATCTACGTCTAT 86 9 0.10 84 0 0 371 6 0 0.00 . 0 bcgsc.ca 37 10 37284272 37284272 + RNA SNP A A G rs10764117 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGGTTGATGGAAA 50 9 0.18 61 0 0 1 1 1.00 . 653365 bcgsc.ca;mdanderson.org 37 10 48003992 48003992 + Missense_Mutation SNP C C T rs3739968 bycluster;byfrequency;byhapmap TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCATTACACACTA 936 57 0.06 1430 2 0.0013986014 12 0 0.00 . 653045 bcgsc.ca;mdanderson.org 37 10 49313245 49313245 + Missense_Mutation SNP C C T rs71242628 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a PTPN20C_ENST00000455582,bladder,carcinoma,0,9 . . . . . CCTCCTCATCCTC 264 27 0.10 347 0 0 9 0 0 . 0 bcgsc.ca 37 10 52443585 52443585 + RNA SNP T T C rs11006622 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACTGGATGCCCCC 144 9 0.06 179 0 0 0 0 . 0 bcgsc.ca 37 10 69510905 69510905 + RNA SNP C C T rs10997795 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAACCACACTCAG 40 5 0.13 64 0 0 0 0 ZSWIM8 23053 bcgsc.ca 37 10 75551642 75551642 + Missense_Mutation SNP C C T rs201390871 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_015037 exon10 c.C1345T p.R449W CAGCTGCGGCAGT 74 5 0.07 96 0 0 28 0 0.00 LOC653486 147199 bcgsc.ca 37 11 194441 194441 + Silent SNP C C T rs61997072 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001097610 exon3 c.C279T p.D93D TCAGGACGGTGCC 86 6 0.07 124 0 0 1 0 0.00 . 387745 bcgsc.ca 37 11 3437850 3437850 + RNA SNP G G A novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCAAAAGCTCTGT 76 5 0.07 99 0 0 2 0 0.00 . 387745 bcgsc.ca 37 11 3439455 3439455 + RNA SNP A A C rs12421377 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAAAGCACCGGGC 71 5 0.07 75 0 0 0 0 . 340990 bcgsc.ca 37 11 17579783 17579783 + Missense_Mutation SNP C C A rs61611064 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGCAGGCCCCTAA 96 8 0.08 100 0 0 0 0 . 340990 bcgsc.ca;mdanderson.org 37 11 17593709 17593709 + Missense_Mutation SNP T T C rs7106548 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGGTCTCTGGCT 129 9 0.07 205 0 0 0 0 . 340990 bcgsc.ca;mdanderson.org 37 11 17596313 17596313 + Silent SNP G G A rs4757548 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGCCCCGTGTGGA 55 8 0.15 61 0 0 0 0 . 340990 ucsc.edu;mdanderson.org 37 11 17600033 17600033 + Missense_Mutation SNP G G A rs2355466 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTGTCAGCCCGTG 21 6 0.29 17 0 0 0 0 . 340990 bcgsc.ca 37 11 17656686 17656686 + Silent SNP C C T rs11024350 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGATCCTGATCA 62 5 0.08 63 0 0 2 0 0.00 FIBP 9158 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65651461 65651461 + Missense_Mutation SNP C C T rs140853801 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a FIBP,colon,carcinoma,0,1 FIBP NM_198897 exon10 c.G1079A p.R360H TACAGGCGCAGGA 75 10 0.13 89 0 0 0 0 1 219 42 0.19 PIWIL4 143689 bcgsc.ca 37 11 94322352 94322353 + Missense_Mutation DNP AG AG TA novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 AG AG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . PIWIL4 NM_152431 exon8 c.G981A p.Q327L CCTTTCAGAAGCG 47 5 0.11 88 0 0 70 15 0 0.00 . 401708 bcgsc.ca 37 11 122484722 122484722 + RNA SNP C C T rs61910452 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGCTTACAAGCAG 54 10 0.19 111 0 0 0 0 SLC6A13 6540 ucsc.edu 37 12 351879 351879 + Missense_Mutation SNP C C A novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a SLC6A13,caecum,carcinoma,0,2 SLC6A13 NM_016615 exon4 c.G379T p.V127F AGTAGACGTTGAG 159 22 0.14 98 2 0.0204081633 62 2 0 0 . 0 bcgsc.ca 37 12 6588445 6588445 + RNA SNP A A G rs2008134 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCCCTGATAGGAG 70 6 0.09 34 0 0 3 0 0.00 PEX5 5830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 7354887 7354887 + Silent SNP C C T rs140332077 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001131023 exon8 c.C738T p.S246S GGAGTCCGGTGCA 218 33 0.15 122 0 0 0 311 18 0.06 . 0 bcgsc.ca 37 12 10659228 10659228 + Missense_Mutation SNP A A T rs61738398 byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a Q5I0X0_HUMAN,NS,carcinoma,-1,2 . . . . . AAGAAAATTCCAG 893 42 0.05 541 0 0 2 239 0 0.00 TAS2R19 259294 ucsc.edu 37 12 11174765 11174765 + Missense_Mutation SNP G G A rs199722277 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . TAS2R19 NM_176888 exon1 c.C406T p.P136S CCAAGGGCCCCAA 169 1 0.01 99 0 0 30 30 13 0.43 HTR7P1 0 broad.mit.edu 37 12 13154583 13154583 + RNA DEL G G - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGAGCGGGGGCC 10 5 0.50 4 0 0 0 0 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25378562 25378562 + Missense_Mutation SNP C C T rs121913527 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a KRAS_ENST00000256078,colon,carcinoma,+1,137 KRAS_ENST00000256078 NM_004985 exon4 c.G436A p.A146T TCTTTGCTGATGT 134 26 0.19 74 1 0.0135135135 1 137 262 49 0.19 . 0 bcgsc.ca 37 12 27292934 27292934 + RNA SNP G G C rs41512649 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCAGAAGTTGGAT 240 13 0.05 143 0 0 10 0 0.00 . 283463 bcgsc.ca;mdanderson.org 37 12 40823354 40823354 + Missense_Mutation SNP G G C rs11564245 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGCCAAGATGCAA 93 7 0.08 91 0 0 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40826514 40826514 + Silent SNP T T C rs10506162 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGTTCCTGTGATG 168 20 0.12 149 0 0 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40834918 40834918 + Missense_Mutation SNP C C T rs4768261 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAAATTCTAAAGG 179 29 0.16 142 0 0 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40837898 40837898 + Missense_Mutation SNP G G A rs11564109 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTCTTTGTGGAAA 112 11 0.10 83 0 0 0 0 . 283463 ucsc.edu 37 12 40921902 40921902 + Silent SNP C C T rs4768287 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGAAGCTTCAGC 35 6 0.17 17 0 0 0 0 . 0 bcgsc.ca 37 12 43964281 43964281 + RNA SNP T T G rs11831774 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTGAGTGAATGC 112 5 0.04 94 0 0 0 0 . 0 bcgsc.ca 37 12 43965011 43965011 + RNA SNP A A T rs66501365 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCACCAACACAGG 131 11 0.08 94 0 0 0 0 PLEKHA8P1 0 broad.mit.edu;bcgsc.ca 37 12 45566862 45566867 + RNA DEL TTTATT TTTATT - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 TTTATT TTTATT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . PLEKHA8P1 . . . . TATTTATTTATTT 45 13 0.29 43 0 0 38 0 0 . 85349 bcgsc.ca 37 12 52646139 52646139 + RNA SNP G G A rs146544749 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGATCAGGCAGGC 104 8 0.08 94 0 0 0 0 . 0 bcgsc.ca 37 12 55197244 55197244 + RNA SNP C C T rs11171086 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTGAGCTTGTAA 42 7 0.17 29 0 0 2 0 0.00 . 653441 bcgsc.ca 37 12 55805647 55805647 + RNA SNP A A G rs12825123 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTCTGCAATCTCT 369 14 0.04 335 1 0.0029850746 3798 1 0.00 . 0 bcgsc.ca 37 12 64118558 64118558 + Splice_Site SNP A A G rs3864455 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCAGTTAATTCTG 128 10 0.08 94 0 0 1 0 0.00 SLC5A8 160728 hgsc.bcm.edu 37 12 101603313 101603313 + Missense_Mutation SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a SLC5A8,colon,carcinoma,0,1 SLC5A8 NM_145913 exon1 c.C314A p.P105Q AACACCGGGAGGA 95 5 0.05 79 1 0.0126582278 0 1 0 0 . 0 bcgsc.ca 37 12 106566174 106566174 + RNA SNP A A C rs3853777 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTGACAACAGCG 85 5 0.06 79 0 0 0 0 . 171222 bcgsc.ca 37 13 31002373 31002373 + RNA SNP G G A rs2892546 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CGAAAAGGGGCAG 127 6 0.05 190 0 0 0 0 . 100128626 bcgsc.ca 37 13 64385632 64385632 + RNA SNP C C T rs78786519 byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTCCTCGACACT 51 6 0.12 65 0 0 12 0 0.00 . 122199 bcgsc.ca 37 13 65532930 65532930 + RNA SNP A A G rs9598891 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCAGGCAGGTGGT 33 6 0.18 61 0 0 1 0 0.00 . 100288130 bcgsc.ca 37 13 71498338 71498338 + RNA SNP C C T rs7335663 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CATTGGCGTGGGC 74 6 0.08 78 0 0 0 0 . 100288130 bcgsc.ca 37 13 71498360 71498360 + RNA SNP G G C rs7336024 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGCAGGGAGGAAG 72 4 0.06 81 0 0 0 0 . 150928 bcgsc.ca;mdanderson.org 37 13 82264343 82264343 + RNA SNP A A G rs7326041 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCAGGAAGCTGAC 108 13 0.12 136 0 0 38 34 0.89 . 150928 bcgsc.ca 37 13 82264468 82264468 + RNA SNP G G A rs9574945 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCAAGCGGGCAGC 35 4 0.11 56 0 0 605 0 0.00 . 121727 bcgsc.ca 37 13 90644911 90644911 + RNA SNP G G A rs9588829 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CGCCCCGCCTACT 60 5 0.08 87 0 0 0 0 MYO16 23026 broad.mit.edu 37 13 109793111 109793111 + Frame_Shift_Del DEL C C - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . MYO16 NM_001198950 exon32 c.4551delC p.F1517fs GGTGTTCCCCCCG 2242 13 0.01 101 0 0 285 7 0 0.00 POTEG 404785 bcgsc.ca;mdanderson.org 37 14 19566036 19566036 + Silent SNP C C T rs8142076 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . POTEG NM_001005356 exon6 c.C1080T p.Y360Y TGACTACAAAGAA 227 23 0.10 360 0 0 118 0 0 . 440153 bcgsc.ca 37 14 19806717 19806717 + RNA SNP A A C rs1575832 bycluster;byfrequency;byhapmap TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AATAGTATAGGAT 379 40 0.11 476 2 0.0042016807 0 0 . 0 bcgsc.ca 37 14 22070355 22070355 + RNA SNP T T C rs199637760 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCCCGATGTCCAC 128 11 0.09 154 0 0 0 0 . 319089 bcgsc.ca;mdanderson.org 37 14 38277999 38277999 + Missense_Mutation SNP C C T rs4901284 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTATACAGCATT 388 18 0.05 503 0 0 0 0 . 0 bcgsc.ca 37 14 69335445 69335445 + RNA SNP G G A rs75789840 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACATACGTTCTGT 16 4 0.25 19 0 0 0 0 . 0 broad.mit.edu 37 14 92040590 92040590 + Frame_Shift_Del DEL C C - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCGCCTCCGCCCC 40 7 0.18 57 0 0 0 0 . 3503 bcgsc.ca 37 14 106091329 106091329 + RNA SNP G G C rs8015545 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGTGCAGGACGGT 172 9 0.05 252 0 0 1483 1 0.00 . 3503 bcgsc.ca 37 14 106092152 106092152 + RNA SNP G G A rs41493549 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCTACGTTGCAG 92 6 0.07 137 0 0 592 0 0.00 . 3501 bcgsc.ca 37 14 106110137 106110137 + RNA SNP C C T rs8009156 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTCCACGCCGTC 150 10 0.07 259 0 0 11907 9 0.00 . 3505 bcgsc.ca 37 14 106134806 106134806 + RNA SNP G G A rs10144746 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCGCTGGGGTAGA 266 11 0.04 359 0 0 6195 2 0.00 . 28388 bcgsc.ca;mdanderson.org 37 14 107035142 107035142 + RNA SNP G G A rs61732461 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGGGCGAGGATG 91 8 0.09 103 0 0 1397 0 0.00 . 28461 bcgsc.ca;mdanderson.org 37 14 107170207 107170207 + RNA SNP C C T rs11845287 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCCAGACTGCACC 86 7 0.08 116 0 0 1341 8 0.01 . 28454 bcgsc.ca 37 14 107178941 107178941 + RNA SNP T T A rs10133751 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGTAGTATTTAT 261 12 0.05 334 2 0.005988024 393 5 0.01 . 28454 bcgsc.ca 37 14 107179013 107179013 + RNA SNP A A G rs61732216 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGCTCACACACA 200 10 0.05 251 0 0 440 0 0.00 . 28454 bcgsc.ca 37 14 107179017 107179017 + RNA SNP A A G rs61732209 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCACACACATTCC 196 8 0.04 248 0 0 468 0 0.00 . 28454 bcgsc.ca 37 14 107179106 107179106 + RNA SNP C C T rs10144703 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GACTCCCTCAAGG 134 7 0.05 175 0 0 385 0 0.00 . 0 bcgsc.ca 37 15 20445987 20445987 + RNA SNP C C T rs4931804 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a ENSG00000215407,NS,carcinoma,0,1 . . . . . CCTCAACGGGGGC 227 8 0.04 202 1 0.004950495 1 2 0 0.00 . 0 bcgsc.ca 37 15 20453913 20453913 + RNA SNP C C T rs2601516 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGGACACACACCC 169 10 0.06 166 1 0.0060240964 0 0 . 606 bcgsc.ca 37 15 20867370 20867370 + RNA SNP T T C rs7402675 bycluster;byfrequency;by2hit2allele TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGCACATCATGAA 121 15 0.12 142 0 0 2 0 0.00 . 606 bcgsc.ca 37 15 20868281 20868281 + RNA SNP T T C rs11248797 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTGTTTCAGAAA 638 46 0.07 627 1 0.0015948963 0 0 LOC727924 0 bcgsc.ca 37 15 22298230 22298230 + RNA SNP A A T rs8036276 bycluster;byfrequency;by2hit2allele TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCTCTAAAAAGG 207 9 0.04 192 0 0 0 0 LOC727924 0 bcgsc.ca 37 15 22298333 22298333 + RNA SNP A A T rs1816290 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTGCATATGTTGT 167 18 0.11 172 0 0 0 0 . 0 bcgsc.ca 37 15 23500403 23500403 + RNA SNP G G A rs199579714 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGCACGGAAGTG 146 10 0.07 155 0 0 0 0 . 0 bcgsc.ca 37 15 30297821 30297821 + RNA SNP G G C rs1004818 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGAGATGAGATGC 59 5 0.08 70 0 0 0 0 C15orf55 256646 hgsc.bcm.edu 37 15 34640735 34640735 + Silent SNP T T C novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_175741 exon2 c.T582C p.T194T GGCCACTCTATCC 64 4 0.06 72 0 0 15 0 0.00 . 0 bcgsc.ca 37 15 35385338 35385338 + RNA SNP T T C rs12901760 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGCGGTGGCCCA 49 7 0.14 47 0 0 4 0 0.00 . 0 bcgsc.ca 37 15 62654429 62654429 + RNA SNP C C T rs2089322 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGCTGCGCTTCC 221 14 0.06 211 0 0 2 0 0.00 CCDC33 80125 ucsc.edu;bcgsc.ca 37 15 74623054 74623054 + Missense_Mutation SNP A A G novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . CCDC33 NM_025055 exon13 c.A1507G p.R503G AAACTGAGGGACA 33 4 0.12 28 0 0 160 0 0 . 0 bcgsc.ca 37 15 78187053 78187053 + RNA SNP G G C rs144204249 by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CACCTGGTCGGTC 159 13 0.08 187 0 0 0 0 . 0 bcgsc.ca 37 15 78272318 78272318 + RNA SNP C C G rs12439777 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCAGGGCCCTCCC 717 70 0.10 759 5 0.0065876153 0 0 . 0 bcgsc.ca 37 15 79852289 79852289 + RNA SNP A A G rs1685164 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGCACATTTAAG 88 8 0.09 96 0 0 0 0 LOC390660 0 bcgsc.ca 37 15 82620272 82620272 + RNA SNP A A T rs141755317 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACTCCCACCTTCC 64 10 0.16 52 0 0 1 0 0.00 . 0 bcgsc.ca 37 15 84722797 84722798 + RNA DNP TT TT GC novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 TT TT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCAAGCTTTATAA 67 6 0.09 62 0 0 0 0 . 0 bcgsc.ca 37 16 16463250 16463250 + RNA SNP A A G rs56194511 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CACTGCAAAGAGT 83 6 0.07 101 0 0 0 0 ITPRIPL2 162073 ucsc.edu 37 16 19126254 19126254 + Silent SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . ITPRIPL2 NM_001034841 exon1 c.C471T p.I157I CTTCATCCAGGTG 25 3 0.12 39 0 0 40 29 5 0.17 . 400555 bcgsc.ca 37 16 88620195 88620195 + Missense_Mutation SNP T T G rs2879897 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a C16orf85,NS,carcinoma,0,1 . . . . . TACACTTTCCATT 53 5 0.09 85 0 0 1 0 0 . 400555 bcgsc.ca;mdanderson.org 37 16 88633052 88633052 + Missense_Mutation SNP G G C rs56983565 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AACGCTGGCAGGC 80 7 0.09 93 0 0 0 0 RAP1GAP2 23108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 2921439 2921439 + Missense_Mutation SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_015085 exon18 c.C1579T p.L527F GGCAGCCTCAGCG 79 16 0.20 106 0 0 47 27 0.57 FLII 2314 bcgsc.ca 37 17 18151320 18151320 + Missense_Mutation SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . FLII NM_002018 exon19 c.C2218A p.L740M GTGGCAGCTCCAG 53 5 0.09 69 0 0 79 202 0 0.00 . 284167 bcgsc.ca 37 17 60214681 60214681 + RNA SNP G G A rs12937135 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTTCTGCTTTCG 80 6 0.08 87 0 0 65 0 0.00 . 732538 bcgsc.ca 37 17 66091753 66091753 + RNA SNP C C T rs35320230 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCAGTCGATCTG 129 9 0.07 125 0 0 0 0 . 0 bcgsc.ca 37 17 74591725 74591725 + RNA SNP T T A rs72867697 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTTAGTTTTCAT 40 5 0.13 47 0 0 0 0 SMCHD1 23347 ucsc.edu 37 18 2666989 2666989 + Missense_Mutation SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . SMCHD1 NM_015295 exon3 c.G383T p.G128V AAAGTGGCATGTA 95 2 0.02 124 0 0 88 68 8 0.12 rescued with RNA-seq SMCHD1 23347 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 2688481 2688483 + In_Frame_Del DEL TCT TCT - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 TCT TCT Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . SMCHD1 NM_015295 exon6 c.727_729del p.243_243del AAGCTGTCTTCTT 89 10 0.11 116 0 0 88 104 0 0.00 . 100129556 bcgsc.ca 37 18 21252592 21252592 + RNA SNP A A G rs12962228 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGTTGGACACATT 9 3 0.33 17 0 0 0 0 AQP4-AS1 0 broad.mit.edu 37 18 24445878 24445878 + RNA DEL T T - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACTTAATTTTTTT 9 3 0.33 5 0 0 0 0 . 390844 bcgsc.ca 37 18 26232188 26232188 + RNA SNP T T G rs2655356 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTGCTTGGAGCA 33 4 0.12 55 0 0 0 0 . 0 bcgsc.ca 37 18 33422218 33422218 + RNA SNP A A T rs61740693 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGACAAAACAAT 53 9 0.17 51 0 0 0 0 . 0 bcgsc.ca 37 18 45157181 45157181 + RNA SNP T T C rs3813071 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATTGACTATCTTT 64 8 0.13 93 0 0 1 0 0.00 . 140623 bcgsc.ca 37 18 72057474 72057474 + RNA SNP A A G rs11553061 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCGACCATTTCCT 20 4 0.20 26 0 0 24 20 0.83 KCNG2 26251 bcgsc.ca 37 18 77623903 77623903 + Missense_Mutation SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . KCNG2 NM_012283 exon1 c.G236T p.R79L CCTTCCGCGCCAT 27 4 0.15 26 0 0 48 0 0 . 0 bcgsc.ca 37 19 22869030 22869030 + Silent SNP G G A rs78524936 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a ENSG00000198153,NS,carcinoma,0,1 . . . . . AGAGAAGCCCTAC 415 24 0.06 436 0 0 1 2 0 0.00 . 0 bcgsc.ca 37 19 22869372 22869372 + Silent SNP C C T rs35689937 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACCCTACAAGTGT 132 8 0.06 154 0 0 3 0 0.00 . 440519 ucsc.edu;bcgsc.ca 37 19 23405580 23405580 + Silent SNP T T C rs10412126 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a ZNF724P_ENST00000418100,NS,carcinoma,0,2 . . . . . TGAGGATAGGTTA 29 4 0.14 25 0 0 2 70 0 0.00 . 0 bcgsc.ca 37 19 29282028 29282028 + RNA SNP T T C rs7351076 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGACATGTATAT 27 4 0.15 31 0 0 0 0 CAPNS1 826 bcgsc.ca 37 19 36640664 36640669 + In_Frame_Del DEL GCTGGT GCTGGT - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 GCTGGT GCTGGT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . CAPNS1 . . . . AAAGGGGCTGGTG 102 6 0.06 115 0 0 19 1 0 0.00 RUVBL2 10856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49502588 49502588 + Missense_Mutation SNP A A G novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_006666 exon2 c.A25G p.K9E ACAACCAAAGTCC 204 34 0.17 206 0 0 384 133 0.35 . 0 bcgsc.ca 37 19 50222914 50222914 + RNA SNP G G A rs3810261 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGTTCGCCACCT 42 5 0.12 35 0 0 3 1 0.33 . 10130 bcgsc.ca 37 2 10959407 10959407 + Missense_Mutation SNP A A C rs72779451 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGGTGCATTAGCC 96 5 0.05 86 0 0 0 0 . 10130 bcgsc.ca 37 2 10959461 10959461 + Silent SNP G G T rs72779452 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGAGTGGGCAGGA 70 5 0.07 62 0 0 0 0 . 10130 bcgsc.ca 37 2 10959475 10959475 + Missense_Mutation SNP G G C rs72779453 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AAGTTGGTGAGCC 66 5 0.08 57 0 0 0 0 . 0 bcgsc.ca 37 2 38044830 38044830 + RNA SNP C C G rs4670218 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCGAATCCTACAA 51 5 0.10 55 0 0 1 0 0.00 . 0 bcgsc.ca 37 2 43053772 43053772 + RNA SNP C C T rs13013413 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTCTACGTGGAA 72 13 0.18 81 0 0 0 0 . 0 bcgsc.ca 37 2 58688907 58688907 + RNA SNP G G A rs2075171 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCTTCGTGCAGC 211 11 0.05 214 1 0.0046728972 153 0 0.00 . 0 bcgsc.ca 37 2 65432857 65432857 + RNA SNP T T C rs11887325 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AATTTATCAGAAA 263 12 0.05 271 0 0 446 0 0.00 . 0 bcgsc.ca 37 2 65432952 65432952 + RNA SNP T T C rs35295972 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCAGTTGGATCC 264 10 0.04 267 0 0 547 0 0.00 . 0 bcgsc.ca 37 2 81421951 81421951 + RNA SNP A A G rs13430688 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GACTCCACCAGCG 55 9 0.16 58 0 0 0 0 . 0 bcgsc.ca 37 2 81422135 81422135 + RNA SNP G G T rs6722134 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTAGGGGTTGGC 71 11 0.15 55 0 0 0 0 LOC1720 0 bcgsc.ca 37 2 83084350 83084350 + RNA SNP A A T rs11126880 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TAAACTATTTGTC 46 6 0.13 63 0 0 0 0 . 28902 bcgsc.ca 37 2 90193417 90193417 + RNA SNP A A G rs1724244 bycluster;byfrequency;bysubmitter TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTAATAATTACCC 312 14 0.04 356 1 0.0028089888 0 0 . 28892 bcgsc.ca;mdanderson.org 37 2 90229260 90229260 + RNA SNP T T C rs842173 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGATGATCCAGTC 112 8 0.07 137 0 0 0 0 . 28904 bcgsc.ca 37 2 90259965 90259965 + RNA SNP T T C rs842156 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GATGTGTCATCTG 216 8 0.04 197 2 0.0101522843 3 0 0.00 ANKRD20A8P 0 broad.mit.edu 37 2 95490959 95490960 + RNA INS - - TGC rs372560034 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGTTGTTGCTGC 10 4 0.40 5 0 0 1 0 0.00 . 649489 bcgsc.ca 37 2 107557712 107557712 + RNA SNP G G A rs12993155 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCACCCGTTATAC 32 4 0.13 37 0 0 0 0 . 100130549 bcgsc.ca 37 2 129276720 129276720 + RNA SNP T T C rs841094 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACAGCCTGGACAG 221 17 0.08 186 1 0.0053763441 1 1 1.00 . 284988 bcgsc.ca 37 2 130970911 130970911 + RNA SNP A A G rs12471586 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCCCACAGTGACG 162 17 0.10 154 2 0.012987013 0 0 . 0 bcgsc.ca 37 2 130987792 130987792 + RNA SNP G G A rs12992461 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCAGCGTGCTGG 95 6 0.06 80 1 0.0125 14 0 0.00 . 2777 bcgsc.ca 37 2 132181483 132181483 + RNA SNP G G T rs1059524 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TAATTTGGTCACT 65 6 0.09 66 0 0 2 2 1.00 . 2777 bcgsc.ca 37 2 132182138 132182138 + RNA SNP G G T rs3730150 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATACTTGTATGGG 77 6 0.08 76 0 0 11 0 0.00 . 2777 bcgsc.ca 37 2 132182159 132182159 + RNA SNP T T C rs3730148 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGAGTCTATGGCT 78 6 0.08 75 0 0 44 41 0.93 LOC150776 0 broad.mit.edu 37 2 132250656 132250656 + RNA SNP C C G rs2272360 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTTTGGCGCGGTG 21 5 0.24 32 0 0 7 0 0.00 LOC150776 0 bcgsc.ca 37 2 132257830 132257830 + RNA SNP C C T rs13035779 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTAGACGGTGTC 172 11 0.06 197 1 0.0050761421 47 0 0.00 . 646915 bcgsc.ca 37 2 133075301 133075301 + RNA SNP A A G rs17394868 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCATCTAGGAGAA 126 9 0.07 121 0 0 4 0 0.00 . 0 bcgsc.ca 37 2 139045855 139045855 + RNA SNP C C T rs35998722 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTAAGCGAATAG 129 11 0.09 87 0 0 4 0 0.00 . 0 bcgsc.ca 37 2 139045987 139045987 + RNA SNP C C T rs13033503 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TAGTACCATTTCG 141 8 0.06 126 0 0 1 0 0.00 . 0 bcgsc.ca 37 2 139065003 139065003 + RNA SNP G G C rs7570952 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGAAAGGGTTAT 78 12 0.15 95 0 0 0 0 . 729399 bcgsc.ca 37 2 200525076 200525076 + RNA SNP A A G rs77443884 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GACATCAAGGGCT 69 6 0.09 70 0 0 0 0 LOC100507443 1419 bcgsc.ca 37 2 209010891 209010891 + Missense_Mutation SNP G G A rs2289917 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GACTGCGGGAACG 118 13 0.11 116 1 0.0086206897 1 0 0.00 MFF 56947 hgsc.bcm.edu 37 2 228194321 228194321 + Splice_Site SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTTACAGCTGGAA 129 8 0.06 109 0 0 4 0 0.00 MFF 56947 bcgsc.ca 37 2 228194480 228194481 + Missense_Mutation DNP AG AG TT novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 AG AG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . MFF NM_020194 exon3 c.G20T p.S7F ACAAGCAGTGACA 339 29 0.09 285 2 0.0070175439 48 28 0 0.00 . 0 bcgsc.ca 37 2 241865211 241865211 + Missense_Mutation SNP G G A rs56199645 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AATGACGCGCTGG 149 9 0.06 165 1 0.0060606061 0 0 . 0 bcgsc.ca 37 20 6194421 6194421 + RNA SNP A A C rs6076962 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCAGAAAATTTTC 96 13 0.14 91 0 0 17 0 0.00 . 400836 bcgsc.ca 37 20 10366898 10366898 + RNA SNP T T C rs2223654 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTTCTGTGAAAGA 32 7 0.22 43 0 0 31 0 0.00 . 400836 bcgsc.ca 37 20 10367323 10367323 + RNA SNP C C G rs6039900 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTGAACTAAGGA 25 7 0.28 18 0 0 5 0 0.00 . 400836 bcgsc.ca 37 20 10367909 10367909 + RNA SNP A A C rs6108519 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTCTCAGTGAGG 186 24 0.13 209 1 0.004784689 4 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29628233 29628233 + Missense_Mutation SNP A A G novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . FRG1B . . . . GGGAAAATGGCTT 475 14 0.03 536 10 0.0186567164 181 277 0 0.00 . 391242 bcgsc.ca 37 20 31635384 31635384 + RNA SNP G G A rs743172 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGCAACGGGGAGG 24 5 0.21 36 0 0 0 0 BAGE 85319 broad.mit.edu 37 21 11058613 11058614 + RNA INS - - A rs377480117 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTTTTTTAAAGCA 6 2 0.33 8 0 0 0 0 . 642460 bcgsc.ca 37 21 14795475 14795475 + RNA SNP G G A rs459504 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTCATCGTCCTAT 126 9 0.07 114 0 0 0 0 . 378810 bcgsc.ca 37 21 14899553 14899553 + RNA SNP A A G rs2257395 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGCCCAAGAGCT 28 7 0.25 22 0 0 0 0 . 100631381 bcgsc.ca 37 21 15384535 15384535 + RNA SNP G G C rs1297100 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CATGATGCGCCTG 26 4 0.15 28 0 0 0 0 . 391269 bcgsc.ca 37 21 15436681 15436681 + RNA SNP G G C rs11908695 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGGCCAGATGGTC 257 33 0.13 187 1 0.0053475936 2 0 0.00 . 0 broad.mit.edu 37 21 15461077 15461078 + RNA INS - - A rs200906842 bycluster;alternate_allele TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTACTTAAAAAA 6 2 0.33 5 0 0 0 0 . 54019 bcgsc.ca 37 21 20617291 20617291 + RNA SNP G G T rs9980261 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTACAGACTACC 42 6 0.14 44 0 0 0 0 . 391276 bcgsc.ca 37 21 30275638 30275638 + RNA SNP C C T rs2248470 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGAAGGCGACGTT 83 7 0.08 45 0 0 0 0 . 7339 bcgsc.ca 37 21 32434300 32434300 + RNA SNP T T C rs41456545 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AACTGCTGTCCTT 105 10 0.10 60 0 0 0 0 . 7339 bcgsc.ca 37 21 32435334 32435334 + RNA SNP T T C rs11088156 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTGTGTTGTTTAG 42 8 0.19 41 0 0 0 0 TIAM1 7074 bcgsc.ca 37 21 32638549 32638550 + Missense_Mutation DNP CC CC AT novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . TIAM1 NM_003253 exon5 c.G739A p.G247M GGCCCCCCGTTTG 193 9 0.05 170 0 0 522 152 0 0.00 ITSN1 6453 hgsc.bcm.edu;bcgsc.ca 37 21 35144472 35144491 + Frame_Shift_Del DEL GCCCAGCTGGAGCGGGCGGA GCCCAGCTGGAGCGGGCGGA - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 GCCCAGCTGGAGCGGGCGGA GCCCAGCTGGAGCGGGCGGA Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . ITSN1 NM_001001132 exon12 c.1149_1168del p.383_390del CGCCTGGCCCAGC 150 18 0.12 124 0 0 166 62 0 0.00 ITSN1 6453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 35147283 35147283 + Missense_Mutation SNP G G C novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001001132 exon14 c.G1467C p.K489N TAAAAAGCATCAA 183 37 0.20 164 0 0 46 5 0.11 OR11H1 81061 bcgsc.ca;mdanderson.org 37 22 16449050 16449050 + Missense_Mutation SNP G G A rs78804300 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . OR11H1 NM_001005239 exon1 c.C755T p.A252V GAGAAGGCCTTAT 309 21 0.07 337 0 0 44 0 0 CLDN5 7122 mdanderson.org 37 22 19511442 19511442 + Missense_Mutation SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001130861 exon1 c.G592A p.A198T CCTTGGCCGGGCC 30 5 0.17 24 0 0 10 0 0.00 RIMBP3 85376 bcgsc.ca 37 22 20457060 20457060 + Silent SNP C C G rs200551182 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . RIMBP3 NM_015672 exon1 c.G4242C p.V1414V TCTCTTCACCCCC 307 25 0.08 239 1 0.0041841004 42 5 0 0.00 RIMBP3 85376 bcgsc.ca;mdanderson.org 37 22 20457204 20457204 + Silent SNP G G A rs364215 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . RIMBP3 NM_015672 exon1 c.C4098T p.G1366G GCTGGCGCCCAGC 375 23 0.06 289 1 0.0034602076 42 5 0 0.00 RIMBP3 85376 bcgsc.ca 37 22 20457841 20457841 + Missense_Mutation SNP T T C rs202034782 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . RIMBP3 NM_015672 exon1 c.A3461G p.Q1154R GGCACCTGTAGCT 837 30 0.04 783 0 0 42 1 0 0.00 LOC400891 0 bcgsc.ca 37 22 21400282 21400282 + Missense_Mutation SNP G G C rs12170538 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGAGGGGTTCCT 174 7 0.04 115 1 0.0086956522 0 0 LOC400891 0 bcgsc.ca;mdanderson.org 37 22 21407656 21407656 + Missense_Mutation SNP T T C rs59837066 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAAACATCTTCCT 149 9 0.06 121 0 0 0 0 . 0 broad.mit.edu 37 22 22516884 22516884 + RNA DEL C C - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGCATCAGCAGC 205 10 0.05 188 0 0 26 0 0.00 . 28785 bcgsc.ca;mdanderson.org 37 22 22516998 22516998 + RNA SNP C C T rs2073453 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTGACCGCTACC 130 10 0.08 122 0 0 15 0 0.00 . 28770 bcgsc.ca;mdanderson.org 37 22 22556270 22556270 + RNA SNP T T C rs5995639 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCCCTCTCTGTCT 57 6 0.11 62 0 0 0 0 . 23751 bcgsc.ca 37 22 22577869 22577869 + RNA SNP A A G rs743515 bycluster;byfrequency;by2hit2allele TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CGGCGGACACCCG 382 28 0.07 304 1 0.0032894737 0 0 . 28775 bcgsc.ca;mdanderson.org 37 22 22724341 22724341 + RNA SNP A A C rs9607803 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGGACACCTGCC 101 10 0.10 94 0 0 62 0 0.00 . 28810 bcgsc.ca 37 22 22922640 22922640 + RNA SNP C C G rs464317 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGTCGCTAATTG 52 6 0.12 42 0 0 5 0 0.00 . 641379 bcgsc.ca 37 22 25082586 25082586 + RNA SNP T T G rs5751933 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGCTGTGCTCTA 69 6 0.09 58 0 0 0 0 . 641379 bcgsc.ca 37 22 25082635 25082635 + RNA SNP C C T rs5760578 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGTCACGACTTT 79 6 0.08 71 0 0 0 0 . 0 bcgsc.ca 37 22 41470522 41470522 + RNA SNP G G A rs8136923 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTCGGGGCAGTGG 37 5 0.14 37 0 0 6 0 0.00 . 0 bcgsc.ca 37 22 47857537 47857537 + Missense_Mutation SNP T T C rs130877 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTCCCTTAGTTGC 188 10 0.05 162 0 0 0 0 . 0 bcgsc.ca 37 22 47857551 47857551 + Missense_Mutation SNP T T G rs130878 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTCTGTTCTTGA 193 9 0.05 169 0 0 0 0 . 0 bcgsc.ca 37 22 47857576 47857576 + Silent SNP A A G rs130879 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTGCAAAACTAA 189 8 0.04 162 0 0 0 0 . 0 bcgsc.ca 37 22 51193572 51193572 + RNA SNP A A G rs138661035 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTATTATTGGTG 157 11 0.07 149 0 0 18 0 0.00 . 0 bcgsc.ca 37 22 51193629 51193629 + RNA SNP A A G rs142680588 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACCTATACGGCAT 236 15 0.06 230 3 0.0130434783 26 0 0.00 . 0 bcgsc.ca 37 3 14614889 14614889 + RNA SNP T T C rs11707648 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCGGGATGGTCAT 30 4 0.13 50 0 0 6 0 0.00 . 0 bcgsc.ca 37 3 14615601 14615601 + RNA SNP A A C rs9840720 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCACAGAATCGAG 116 9 0.08 109 0 0 1 0 0.00 . 0 bcgsc.ca 37 3 14615612 14615612 + RNA SNP T T C rs9823227 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTCCATCGTTTC 105 8 0.08 95 0 0 1 0 0.00 . 391524 bcgsc.ca 37 3 31496295 31496295 + RNA SNP T T G rs724607 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGAGACTAACTGA 93 8 0.09 134 1 0.0074626866 1 1 1.00 . 645548 bcgsc.ca 37 3 36809119 36809119 + RNA SNP G G A rs9311135 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACCTTTGGCATAG 96 6 0.06 119 0 0 2 0 0.00 GOLGA4 2803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 37340359 37340359 + Missense_Mutation SNP C C G novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001172713 exon9 c.C916G p.L306V GAAACACTCCAGC 253 50 0.20 285 0 0 134 41 0.31 ITIH4 3700 hgsc.bcm.edu 37 3 52852482 52852482 + Silent SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_002218 exon18 c.C2148A p.I716I ACCTTCGATTTTC 119 5 0.04 96 0 0 26 0 0.00 . 0 bcgsc.ca 37 3 82855676 82855676 + RNA SNP G G A rs12636791 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCTTCGTTTGTA 37 7 0.19 35 0 0 0 0 . 0 bcgsc.ca 37 3 82856698 82856698 + RNA SNP G G A rs6782717 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTTAACGTTTTCT 175 13 0.07 178 1 0.0056179775 0 0 . 0 bcgsc.ca 37 3 109635659 109635659 + RNA SNP C C T rs605795 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGTGTCCTCTTGA 31 4 0.13 40 0 0 0 0 . 100130335 bcgsc.ca 37 3 120525556 120525556 + RNA SNP G G C rs115209237 byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACCAAAGAAAGAT 45 6 0.13 47 0 0 4 0 0.00 . 646085 bcgsc.ca 37 3 161047583 161047583 + RNA SNP T T C rs115806772 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACCTTGTGGCTGA 19 4 0.21 24 0 0 0 0 . 200958 bcgsc.ca 37 3 195346477 195346477 + Missense_Mutation SNP C C T rs7631117 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCCCACGGAAGG 322 39 0.12 294 1 0.0034013605 2 0 0.00 . 0 bcgsc.ca;mdanderson.org 37 4 9486098 9486098 + RNA SNP C C G rs114281488 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGATTTCATCTTC 133 12 0.09 195 0 0 0 0 . 0 bcgsc.ca 37 4 43900983 43900983 + RNA SNP T T C rs6830030 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGATGTTGTTCCC 62 6 0.10 101 0 0 0 0 . 0 bcgsc.ca 37 4 43900995 43900995 + RNA SNP A A G rs10019693 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CATAGTATAAGCC 62 6 0.10 105 0 0 0 0 . 0 bcgsc.ca 37 4 57627276 57627276 + RNA SNP G G A rs6844407 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CATTCAGCTTCAA 84 11 0.13 107 0 0 8 0 0.00 . 644548 bcgsc.ca 37 4 63682913 63682913 + RNA SNP T T C rs6551720 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGACAATGGGCAG 83 8 0.10 109 0 0 0 0 . 644548 bcgsc.ca 37 4 63682934 63682934 + RNA SNP C C T rs6551721 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGAAACTGATGA 88 11 0.13 117 0 0 0 0 . 644548 bcgsc.ca 37 4 63683038 63683038 + RNA SNP C C T rs6852768 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTGCACCTAATT 153 11 0.07 238 0 0 2 0 0.00 . 0 bcgsc.ca 37 4 70212704 70212704 + RNA SNP G G A rs6851810 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTTGAGAGCATT 78 6 0.08 97 1 0.0103092784 0 0 . 391672 bcgsc.ca 37 4 83323062 83323062 + RNA SNP T T C rs7695741 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TAGAAGTTGATGC 99 6 0.06 122 0 0 0 0 . 100129714 bcgsc.ca 37 4 109710728 109710728 + RNA SNP C C T rs13137797 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TATCTGCGCGGGG 76 9 0.12 107 0 0 1 0 0.00 . 285412 bcgsc.ca 37 4 113377127 113377127 + RNA SNP G G T rs231266 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGGGCCGTCACAC 41 6 0.15 42 0 0 0 0 . 285412 bcgsc.ca 37 4 113377710 113377710 + RNA SNP T T G rs231267 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGAAGTTCCCAA 73 7 0.10 90 0 0 0 0 . 0 bcgsc.ca 37 4 120315906 120315906 + RNA SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGTTTTCGCTATA 121 13 0.11 172 2 0.011627907 0 0 . 0 bcgsc.ca 37 4 139402514 139402514 + RNA SNP T T C rs13101897 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTTCATTTGTGGG 24 6 0.25 29 0 0 0 0 . 0 bcgsc.ca 37 4 189660460 189660460 + RNA SNP G G C rs60608362 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTAAAGGAAGAT 133 11 0.08 189 1 0.0052910053 45 0 0.00 . 0 bcgsc.ca 37 5 10664632 10664632 + RNA SNP A A G rs12523340 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGTCAACTTCAC 110 10 0.09 152 0 0 0 0 . 0 bcgsc.ca 37 5 10664999 10664999 + RNA SNP C C G rs111384023 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGGGCCCGTGGCG 86 11 0.13 120 0 0 0 0 . 0 bcgsc.ca 37 5 97361783 97361783 + RNA SNP G G A rs4355547 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCATCGAGGTCG 33 4 0.12 69 0 0 0 0 PCDHB4 56131 ucsc.edu;bcgsc.ca 37 5 140502343 140502344 + Missense_Mutation DNP CC CC TT novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CC CC Unknown Untested Somatic WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . PCDHB4 NM_018938 exon1 c.C764T p.P255F AACAGCCCCCTAG 75 8 0.11 125 1 0.008 177 0 0 FLT4 2324 hgsc.bcm.edu 37 5 180048756 180048756 + Silent SNP G G A novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_182925 exon13 c.C1806T p.H602H GTTCCCGTGCGCA 73 4 0.05 85 0 0 6 0 0.00 . 9425 bcgsc.ca 37 6 4735035 4735035 + Missense_Mutation SNP T T C rs13196069 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a CDYL,NS,carcinoma,0,1 . . . . . TCTCCGTGAGCAG 79 5 0.06 75 0 0 1 0 0 . 0 bcgsc.ca 37 6 7517131 7517131 + RNA SNP A A T rs2798162 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGCAGAAGTGAC 41 6 0.15 56 0 0 1 1 1.00 DEK 7913 bcgsc.ca 37 6 18264096 18264096 + Missense_Mutation SNP C C G rs147127829 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . DEK NM_003472 exon2 c.G123C p.E41D CTCCTCCTCGTCG 157 8 0.05 130 1 0.0076923077 31 79 0 0.00 . 0 bcgsc.ca 37 6 23972696 23972696 + RNA SNP G G T rs34725714 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGTTAGTTTCTT 87 8 0.09 110 0 0 0 0 . 0 bcgsc.ca 37 6 23972870 23972870 + RNA SNP T T A rs35353646 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGATACTCACAGG 57 5 0.09 57 0 0 3 0 0.00 ZNF322 79692 bcgsc.ca 37 6 26637724 26637724 + Missense_Mutation SNP T T C rs71557344 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001242797 exon5 c.A1058G p.Y353C ACAGTGTATTTAT 465 16 0.03 506 2 0.0039525692 67 0 0.00 ZKSCAN3 80317 bcgsc.ca 37 6 28331127 28331128 + Missense_Mutation DNP AA AA GC novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 AA AA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a ZKSCAN3,NS,other,-1,1 ZKSCAN3 NM_024493 exon4 c.A599C p.K200A GAAGATAAAGTGG 71 5 0.07 88 0 0 50 1 34 0 0.00 . 729583 bcgsc.ca;mdanderson.org 37 6 28911802 28911802 + Missense_Mutation SNP G G A rs2071790 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCAGGGAGTAAG 91 10 0.11 120 1 0.0083333333 0 0 . 352965 bcgsc.ca 37 6 29901899 29901899 + RNA SNP C C G rs2524004 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTAAACCAGGACC 29 7 0.24 21 0 0 0 0 . 352965 bcgsc.ca 37 6 29901919 29901919 + RNA SNP T T C rs1611304 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTGGACTGCGGCG 33 7 0.21 24 0 0 1 0 0.00 HLA-C 3107 bcgsc.ca 37 6 31236853 31236854 + Missense_Mutation DNP GT GT AC novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 GT GT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . HLA-C . . . p.T397V ATTCAGGTGCCTT 174 17 0.10 176 0 0 92 3197 0 0.00 HLA-DQA1 3117 bcgsc.ca 37 6 32610008 32610009 + Missense_Mutation DNP CC CC TG novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . HLA-DQA1 NM_002122 exon3 c.C592G p.Q198E CCTGGACCAGCCT 468 15 0.03 511 0 0 52 669 0 0.00 . 642443 bcgsc.ca 37 6 66546941 66546941 + RNA SNP A A G rs61732140 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTGGACATATATT 234 13 0.06 267 0 0 8 0 0.00 . 642443 bcgsc.ca 37 6 66547178 66547178 + RNA SNP G G A rs4392709 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCAGTCGTCTCAA 139 6 0.04 181 1 0.0055248619 0 0 . 89761 bcgsc.ca 37 6 66803535 66803535 + RNA SNP C C A rs2881644 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCAAAACTTTTCT 123 11 0.09 162 0 0 1 0 0.00 . 0 bcgsc.ca 37 6 80775738 80775738 + RNA SNP C C G rs3812151 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACATCTCCTGGGG 106 7 0.07 89 0 0 56 0 0.00 . 0 bcgsc.ca 37 6 85996401 85996401 + RNA SNP C C T rs313229 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGCAAGCAGTGTG 224 12 0.05 222 0 0 8 0 0.00 . 442237 bcgsc.ca 37 6 97096688 97096688 + RNA SNP T T C rs11759390 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCCACTGAACTT 148 14 0.09 133 0 0 0 0 MICAL1 64780 bcgsc.ca 37 6 109767930 109767931 + Missense_Mutation DNP GC GC TT rs35260632 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 GC GC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . MICAL1 NM_022765 exon18 c.G2272A p.A777K CCTTCCGCTTTGT 187 8 0.04 230 0 0 79 457 0 0.00 . 0 bcgsc.ca 37 6 111244963 111244963 + RNA SNP A A G rs781496 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGTGAAGATGAA 49 5 0.10 55 0 0 0 0 . 0 bcgsc.ca 37 6 111245074 111245074 + RNA SNP T T C rs781495 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTGGATGGGCCA 70 6 0.09 85 0 0 0 0 . 387074 bcgsc.ca;mdanderson.org 37 6 137295352 137295352 + RNA SNP C C T rs2876354 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCAGACGTATTT 51 7 0.14 54 0 0 0 0 . 391040 bcgsc.ca 37 6 137865140 137865140 + RNA SNP A A G rs9484059 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCAAGACTTGCC 84 7 0.08 87 1 0.0114942529 3 0 0.00 . 153932 bcgsc.ca 37 6 158658857 158658857 + RNA SNP A A C rs112542076 byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGCAAATGTTTA 47 4 0.09 45 0 0 3 0 0.00 . 153932 bcgsc.ca 37 6 158658937 158658937 + RNA SNP T T C rs7753292 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TATCTTTTGGATT 66 5 0.08 60 0 0 2 0 0.00 . 2789 bcgsc.ca 37 6 166653792 166653792 + RNA SNP A A C rs6931334 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGGAATAGAATTT 49 11 0.22 56 0 0 0 0 . 0 bcgsc.ca;mdanderson.org 37 7 1733102 1733102 + Missense_Mutation SNP G G T rs4720922 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CACCCAGACAGGT 241 24 0.10 191 0 0 0 0 . 0 bcgsc.ca 37 7 9767725 9767725 + RNA SNP G G T rs72583761 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GGTTCCGGCTGAC 219 18 0.08 168 0 0 2 0 0.00 . 0 bcgsc.ca 37 7 9767811 9767811 + RNA SNP T T G rs112406696 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTTTTTGGTGGG 134 11 0.08 126 0 0 2 0 0.00 . 0 bcgsc.ca 37 7 23603318 23603318 + RNA SNP A A G rs227944 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTCCAAAATAGAT 401 18 0.04 310 2 0.0064516129 2 0 0.00 LOC646762 0 bcgsc.ca 37 7 29700039 29700039 + RNA SNP C C T rs1728603 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTAAAACGCTTCC 184 20 0.11 142 0 0 1 0 0.00 . 653175 bcgsc.ca 37 7 53255471 53255471 + RNA SNP A A G rs6943510 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AAGCAGATACGAA 265 26 0.10 232 0 0 0 0 . 653175 bcgsc.ca 37 7 53256265 53256265 + RNA SNP G G A rs11972016 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTTGTCGCAGTCA 249 18 0.07 280 0 0 18 0 0.00 . 653175 bcgsc.ca 37 7 53256324 53256324 + RNA SNP T T C rs35856447 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAAAGATGGGAAC 234 12 0.05 241 0 0 15 0 0.00 . 804 bcgsc.ca 37 7 55327599 55327599 + RNA SNP A A G rs7787331 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCATCTATTAGTT 40 7 0.18 44 0 0 0 0 . 360132 bcgsc.ca 37 7 55774888 55774888 + RNA SNP C C T rs12666519 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAGAAGCGTGCCA 338 22 0.07 302 0 0 2 0 0.00 . 100128459 bcgsc.ca 37 7 56296553 56296553 + RNA SNP G G T rs10235373 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTTGGTGGTTCTG 78 10 0.13 62 0 0 0 0 . 100128459 bcgsc.ca 37 7 56296598 56296598 + RNA SNP A A G rs1640564 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTGTCTAATGGAG 72 7 0.10 81 0 0 0 0 . 100128459 bcgsc.ca 37 7 56296728 56296728 + RNA SNP A A G rs1640565 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATTATCATGAGCG 89 6 0.07 78 0 0 0 0 . 100128459 bcgsc.ca 37 7 56296746 56296746 + RNA SNP T T C rs1621849 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TAGCTGTTCAATA 90 6 0.07 85 0 0 0 0 . 100128459 bcgsc.ca 37 7 56296924 56296924 + RNA SNP C C T rs1622932 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTGCACATTTGG 64 11 0.17 59 0 0 1 0 0.00 . 100128459 bcgsc.ca 37 7 56296984 56296984 + RNA SNP C C T rs1640566 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGAAGACCTGTTT 92 6 0.07 88 0 0 0 0 . 100128459 bcgsc.ca 37 7 56297387 56297387 + RNA SNP C C T rs1640567 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCTTTACAGGAGG 39 5 0.13 29 0 0 1 0 0.00 LOC649395 0 bcgsc.ca 37 7 63894558 63894558 + RNA SNP A A C rs73125103 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGGACAAAAACC 198 21 0.11 199 0 0 11 0 0.00 . 0 bcgsc.ca 37 7 64030116 64030116 + RNA SNP C C T rs1446886 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGTAGGCGGCCCG 48 7 0.15 37 0 0 1 0 0.00 LOC493754 0 bcgsc.ca 37 7 66038472 66038472 + RNA SNP G G A rs13240501 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGAATGTGAGGG 168 14 0.08 136 0 0 203 0 0.00 . 641808 bcgsc.ca 37 7 76728248 76728248 + RNA SNP C C T rs75210105 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCATCTCGCTTTG 214 14 0.07 151 0 0 0 0 ZNF804B 219578 bcgsc.ca 37 7 88964226 88964227 + Missense_Mutation DNP CC CC AG novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a ZNF804B,NS,carcinoma,0,1 ZNF804B NM_181646 exon4 c.C1931G p.P644S TGCAGTCCTCATT 186 7 0.04 173 0 0 322 1 0 0 DLX6-AS1 285987 hgsc.bcm.edu 37 7 96637151 96637151 + RNA SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TAATTCCCGAGAA 47 9 0.19 55 0 0 0 0 AZGP1P1 0 broad.mit.edu 37 7 99581179 99581179 + RNA DEL C C - novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATCCCACCCCCCC 6 2 0.33 7 0 0 0 0 . 100130972 bcgsc.ca 37 7 139992942 139992942 + RNA SNP A A G rs12703712 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAATTTAAAATGA 57 6 0.11 33 0 0 0 0 . 0 bcgsc.ca 37 7 154989982 154989982 + Missense_Mutation SNP G G A rs28664023 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CACCCCGAATCAC 208 11 0.05 188 1 0.0053191489 0 0 . 0 bcgsc.ca 37 8 13880562 13880562 + RNA SNP G G T rs7003822 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ACGTAAGACAATC 187 13 0.07 192 0 0 0 0 . 0 bcgsc.ca 37 8 70042263 70042263 + RNA SNP A A G rs67905920 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCGTGCAGAGATG 55 6 0.11 48 0 0 3 1 0.33 . 0 bcgsc.ca 37 8 123781617 123781617 + RNA SNP G G A rs8192652 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . ATGGGTGAGGCTG 22 6 0.27 23 0 0 0 0 . 0 bcgsc.ca 37 8 123782133 123782133 + RNA SNP C C T rs6992158 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAATGACGTCGAT 46 8 0.17 48 0 0 0 0 . 0 bcgsc.ca 37 8 143719983 143719983 + RNA SNP G G C rs2280881 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CATGACGCCAGTG 177 9 0.05 157 1 0.0063694268 0 0 . 100132467 bcgsc.ca 37 9 6669375 6669375 + RNA SNP C C G rs2297556 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TTGCTGCATTGTT 56 4 0.07 66 0 0 1 0 0.00 . 0 bcgsc.ca 37 9 7477728 7477728 + RNA SNP T T C rs12683102 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CGACGGTTTCTCA 49 4 0.08 62 0 0 877 1 0.00 . 392298 bcgsc.ca 37 9 27608549 27608549 + RNA SNP G G A rs142836655 by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTCATTGCAAATG 59 7 0.12 75 0 0 0 0 . 441391 bcgsc.ca 37 9 30689910 30689911 + RNA DNP CA CA TG novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CA CA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CGTGATCATGACT 110 9 0.08 146 0 0 0 0 . 0 bcgsc.ca 37 9 35147963 35147963 + RNA SNP C C T rs79434358 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGAACCGGCTAA 452 25 0.06 657 2 0.00304414 0 0 . 0 bcgsc.ca 37 9 35147983 35147983 + RNA SNP T T C rs75970816 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GCTACATACTTCA 455 23 0.05 668 1 0.001497006 0 0 . 0 bcgsc.ca 37 9 35148203 35148203 + RNA SNP C C G rs10972348 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTAGTACTGAGGA 70 7 0.10 142 0 0 0 0 FAM74A3 728495 bcgsc.ca;mdanderson.org 37 9 40716224 40716224 + RNA SNP C C A rs56989493 bycluster;byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . FAM74A3 . . . . CTGCTGCACTTGG 260 17 0.07 291 0 0 17 0 0 . 100287333 bcgsc.ca 37 9 44998898 44998898 + RNA SNP C C T rs9411886 bycluster TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGAAACCGCTTGT 259 13 0.05 244 0 0 3 0 0.00 . 0 bcgsc.ca 37 9 76264026 76264026 + RNA SNP C C T rs62540675 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AAGGGCCTGGAGA 39 5 0.13 31 0 0 0 0 LOC286238 0 bcgsc.ca 37 9 91262387 91262387 + RNA SNP G G A rs28550932 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_001100111 exon2 c.C256T p.R86W TGTCCCGTGTCTG 92 7 0.08 101 0 0 0 0 AUH 549 bcgsc.ca 37 9 94060353 94060353 + Missense_Mutation SNP G G T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . AUH NM_001698 exon5 c.C511A p.L171I CTGGAAGATTAGC 78 5 0.06 91 0 0 32 80 0 0.00 . 414319 bcgsc.ca;mdanderson.org 37 9 105405434 105405434 + RNA SNP T T C rs10990214 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AACAACTCCATCT 60 8 0.13 51 0 0 0 0 LAMC3 10319 bcgsc.ca 37 9 133901819 133901820 + Missense_Mutation DNP CC CC AG novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . LAMC3 NM_006059 exon2 c.C522G p.P174Q GCCGGCCCGAGGG 163 9 0.06 193 0 0 167 12 0 0.00 . 0 bcgsc.ca 37 9 138340462 138340462 + RNA SNP A A G rs10732637 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAAGGGATAGATC 25 5 0.20 43 0 0 0 0 LOC389906 0 bcgsc.ca 37 X 3736489 3736489 + Missense_Mutation SNP C C T rs1133336 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAACAGCGTATAA 103 8 0.08 96 1 0.0104166667 119 0 0.00 . 10064 bcgsc.ca 37 X 49397627 49397627 + RNA SNP T T C rs7891756 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CATTTTTCCCCCC 34 7 0.21 40 0 0 0 0 . 0 bcgsc.ca 37 X 61999396 61999396 + RNA SNP A A C rs60576970 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AGAGGGAATAATT 33 4 0.12 29 0 0 1 0 0.00 . 0 bcgsc.ca 37 X 65176531 65176531 + RNA SNP T T C rs199968155 TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . AACTGGTCCTGAA 282 9 0.03 211 1 0.0047393365 37 0 0.00 . 0 bcgsc.ca 37 X 65176539 65176539 + RNA SNP G G C rs112831485 byfrequency TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGAAGGTGCAGA 291 9 0.03 208 0 0 27 0 0.00 BCYRN1 618 hgsc.bcm.edu 37 X 70617455 70617455 + RNA SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAACTTCCAGAGT 42 7 0.17 34 0 0 0 0 . 728748 bcgsc.ca 37 X 73617109 73617109 + RNA SNP C C T rs34974916 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTATACGTGTCA 55 10 0.18 50 0 0 0 0 . 347363 bcgsc.ca 37 X 78580025 78580025 + RNA SNP A A C rs115569657 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAACAAACCTGTT 31 4 0.13 31 0 0 0 0 . 642546 bcgsc.ca 37 X 79827607 79827607 + RNA SNP A A G rs1828209 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CACAGCAGCCATG 56 7 0.13 33 0 0 0 0 . 254700 bcgsc.ca 37 X 89367831 89367831 + RNA SNP C C T rs111832781 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GTCGTCCGTTTCG 34 4 0.12 43 0 0 1 0 0.00 . 0 bcgsc.ca 37 X 100212432 100212432 + RNA SNP C C G rs12842818 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGAGGCCTCTCGC 95 12 0.13 74 0 0 0 0 . 84443 broad.mit.edu 37 X 106846478 106846480 + In_Frame_Del DEL CAG CAG - rs201186557 alternate_allele TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CAACAACAGCAGC 127 0 0.00 132 0 0 0 0 . 642812 bcgsc.ca 37 X 115239568 115239568 + RNA SNP G G A novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCTTAGTACCAC 41 6 0.15 43 0 0 0 0 . 286423 bcgsc.ca 37 X 122250996 122250996 + Missense_Mutation SNP G G T rs6648942 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . GAGTATGTGGCCT 237 19 0.08 159 2 0.0125786164 0 0 . 0 bcgsc.ca 37 X 134807372 134807372 + RNA SNP A A G rs7890081 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTTCTCAAGTTGC 121 24 0.20 104 0 0 0 0 . 0 bcgsc.ca 37 X 134814932 134814932 + RNA SNP G G T rs111943338 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TGGAACGTTTCTG 206 22 0.11 182 0 0 0 0 . 0 bcgsc.ca 37 X 145701530 145701530 + RNA SNP T T G rs17273448 bycluster;byfrequency;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTCCCTCTCGAT 44 8 0.18 38 0 0 3 3 1.00 . 0 bcgsc.ca 37 X 145701579 145701579 + RNA SNP C C T rs112188715 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CTGCTGCCTGAAC 63 11 0.17 44 0 0 132 0 0.00 . 0 bcgsc.ca 37 X 147279972 147279972 + RNA SNP T T C rs142596624 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCTGGATACTTAA 37 5 0.14 31 0 0 0 0 . 0 bcgsc.ca;mdanderson.org 37 X 152751497 152751497 + Missense_Mutation SNP G G A rs56165949 bycluster;by1000genomes TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . TCCCACGCGGCCT 49 7 0.14 53 0 0 0 0 TAZ 6901 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153648387 153648387 + Silent SNP T T C novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . NM_000116 exon8 c.T600C p.I200I CCTGATTGCTGAG 223 22 0.10 149 0 0 38 3 0.08 . 286544 bcgsc.ca 37 Y 14107272 14107272 + RNA SNP C C T novel TCGA-W4-A7U2-01A-11D-A435-10 TCGA-W4-A7U2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 88f98c12-9f30-4071-861b-f66445d6d122 90d0d153-4618-406d-b803-64cda8a4ba9a . . . . . . CCATGGCGGGCCA 82 16 0.20 103 0 0 2 0 0.00