Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MIB2 142678 mdanderson.org 37 1 1562341 1562341 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_080875 exon10 c.C1547T p.A516V AGGATGCCAACCT 32 3 0.09 35 0 0 26 0 0.00 HSPG2 3339 mdanderson.org 37 1 22202511 22202511 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 HSPG2,NS,carcinoma,+1,1 HSPG2 NM_005529 exon24 c.C3028A p.R1010S TGAAGCGCAGCTC 47 3 0.06 53 0 0 1 1 0 0 AIM1L 55057 mdanderson.org 37 1 26669371 26669371 + Missense_Mutation SNP C C A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001039775 exon5 c.G3078T p.W1026C CAGCACCCAGCTG 43 3 0.07 48 0 0 0 0 MANEAL 149175 mdanderson.org 37 1 38260364 38260364 + Silent SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001113482 exon1 c.G510T p.V170V CGAAGTGCTGCGG 45 3 0.07 30 0 0 4 0 0.00 ANKRD35 148741 hgsc.bcm.edu;broad.mit.edu 37 1 145561847 145561847 + Frame_Shift_Del DEL C C - novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . ANKRD35 NM_144698 exon10 c.1534delG p.A512fs GGGGGGCTTTGTC 160 11 0.07 184 0 0 96 0 0 OR10K1 391109 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 158435624 158435624 + Silent SNP C C A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 OR10K1,NS,carcinoma,0,1 OR10K1 NM_001004473 exon1 c.C273A p.T91T GAAGACCATTTCT 174 11 0.06 175 0 0 0 1 0 0 CEP170 9859 broad.mit.edu;mdanderson.org 37 1 243354757 243354757 + Missense_Mutation SNP G G A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . CEP170 NM_001042405 exon8 c.C671T p.A224V GCAGCTGCAGATT 46 4 0.09 68 0 0 153 2 0 0.00 ADARB2-AS1 642394 hgsc.bcm.edu 37 10 1578004 1578004 + RNA SNP T T C novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . CTGAGTTCCCTTG 137 6 0.04 104 0 0 0 0 NPFFR1 64106 mdanderson.org 37 10 72015064 72015064 + Silent SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_022146 exon4 c.G942A p.A314A CCAGTGCGCGAAG 28 3 0.11 37 0 0 0 0 PDCD11 22984 broad.mit.edu 37 10 105174894 105174894 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . PDCD11 NM_014976 exon12 c.G1504T p.E502X GGGGATGAGGTCA 286 6 0.02 330 0 0 160 5 0 0.00 DUSP5 1847 hgsc.bcm.edu 37 10 112270021 112270021 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_004419 exon4 c.G992T p.G331V GCCAAGGGGAGGC 90 5 0.06 113 0 0 15 0 0.00 NRAP 4892 hgsc.bcm.edu 37 10 115356933 115356933 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 NRAP,uveal_tract,malignant_melanoma,-1,1 NRAP NM_001261463 exon37 c.G4343A p.R1448H TTTTTACGGTACT 85 4 0.05 99 0 0 -1 1 0 0 PHF21A 51317 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 46001326 46001326 + Silent SNP G G A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . PHF21A NM_016621 exon6 c.C345T p.N115N AGTCAGGTTGGGA 96 17 0.18 119 2 0.0168067227 107 7 3 0.43 DAK 26007 mdanderson.org 37 11 61113960 61113960 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_015533 exon18 c.G1713T p.E571D CTTGGAGGTCTTG 17 2 0.12 24 0 0 44 0 0.00 NXF1 10482 broad.mit.edu;mdanderson.org 37 11 62568854 62568854 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 NXF1,mucosal,malignant_melanoma,0,1 NXF1 NM_006362 exon8 c.C745A p.R249S TTCTGCGATTCAG 45 3 0.07 60 0 0 67 1 44 0 0.00 LRP5 4041 mdanderson.org 37 11 68115598 68115598 + Silent SNP G G A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_002335 exon2 c.G375A p.T125T CTGGACGGACTCA 51 3 0.06 72 0 0 0 0 FUT4 2526 mdanderson.org 37 11 94278020 94278020 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_002033 exon1 c.G721T p.D241Y CACCGCGACCTCG 25 2 0.08 30 0 0 4 0 0.00 TRAPPC4 51399 mdanderson.org 37 11 118889660 118889660 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_016146 exon1 c.G155T p.G52V CTTTCGGCCAGCG 44 3 0.07 54 0 0 154 0 0.00 ROBO3 64221 mdanderson.org 37 11 124749826 124749826 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 ROBO3_ENST00000397801,mouth,carcinoma,-1,1 ROBO3_ENST00000397801 NM_022370 exon26 c.C3940T p.R1314W GCCCAGCGGGTGC 30 3 0.10 65 0 0 -1 1 12 0 0.00 PRH1-PRR4 0 hgsc.bcm.edu 37 12 11243716 11243716 + RNA SNP T T C rs199540487 bycluster TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . CACACATATATAT 9 4 0.44 6 0 0 0 0 ETV6 2120 mdanderson.org 37 12 11905470 11905470 + Silent SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001987 exon2 c.G120T p.A40A TCGAGCGCTCAGG 45 3 0.07 37 0 0 1 0 0.00 DENND5B 160518 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 31632964 31632964 + Missense_Mutation SNP T T A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 DENND5B,NS,carcinoma,+2,1 DENND5B NM_144973 exon3 c.A463T p.M155L AGTCCATACTGCA 168 7 0.04 183 0 0 2 1 1 1 1.00 RAPGEF3 10411 mdanderson.org 37 12 48141538 48141538 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001098531 exon14 c.G1430A p.G477D ATGGAGCCATACA 30 3 0.10 31 0 0 1 0 0.00 RARG 5916 ucsc.edu 37 12 53609563 53609563 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . RARG NM_000966 exon4 c.G200A p.S67N CTGGTGCTCTGTG 38 4 0.11 34 0 0 53 4 0 0.00 DLGAP5 9787 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 55655696 55655696 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_014750 exon2 c.C202A p.Q68K GCCCTTGAGATGT 232 12 0.05 228 0 0 11 3 0.27 PSMC1 5700 mdanderson.org 37 14 90726472 90726472 + Missense_Mutation SNP A A G novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_002802 exon3 c.A71G p.K24R AAAAGAAATATGA 14 2 0.14 13 0 0 6 0 0.00 UNC79 57578 broad.mit.edu 37 14 94079317 94079317 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 UNC79,NS,carcinoma,+1,2 UNC79 NM_020818 exon27 c.G3398T p.R1133L TCAAGCGACACCT 151 3 0.02 182 1 0.0054945055 366 2 0 0 . 28454 bcgsc.ca 37 14 107179022 107179022 + RNA SNP C C T rs2157615 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . CACATTCCACTAG 326 11 0.03 399 4 0.0100250627 101 16 0.16 rescued with RNA-seq . 0 broad.mit.edu 37 15 23407139 23407140 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . TGCCTCCACATCT 656 24 0.04 688 0 0 0 0 WDR76 79968 broad.mit.edu 37 15 44134649 44134649 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . WDR76 NM_024908 exon6 c.G769T p.E257X ACTTCTGAAAATC 465 7 0.02 453 1 0.0022075055 34 4 0 0.00 USP3 9960 broad.mit.edu 37 15 63852125 63852125 + Silent SNP A A G novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . USP3 NM_006537 exon7 c.A603G p.A201A AACAGCAGGAAGG 300 4 0.01 269 0 0 37 4 0 0.00 IFT140 9742 broad.mit.edu 37 16 1574556 1574556 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . IFT140 NM_014714 exon24 c.C3138A p.C1046X TACCTTGCACAGG 52 4 0.08 73 0 0 128 0 0 KATNB1 10300 mdanderson.org 37 16 57787863 57787863 + Missense_Mutation SNP C C T rs143811277 bycluster TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 KATNB1,rectum,carcinoma,0,1 KATNB1 NM_005886 exon13 c.C1184T p.T395M GTCGGACGCCACC 55 4 0.07 55 0 0 0 0 1 38 0 0.00 PSKH1 5681 bcgsc.ca 37 16 67942635 67942635 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . PSKH1 . . . . GGAGAGGATGCCC 73 5 0.07 69 0 0 28 4 0 0.00 MLYCD 23417 broad.mit.edu 37 16 83949014 83949014 + Missense_Mutation SNP T T C novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . MLYCD NM_012213 exon5 c.T1402C p.Y468H ACCTCCTACCTCG 98 4 0.04 114 0 0 27 14 0 0.00 PIEZO1 9780 mdanderson.org 37 16 88788277 88788277 + Missense_Mutation SNP G G A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001142864 exon37 c.C5153T p.A1718V AGCATGGCCCACA 34 3 0.09 51 0 0 9 0 0.00 FAM101B 359845 broad.mit.edu 37 17 295726 295726 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . FAM101B . . . . GACGCTGGACTCT 372 4 0.01 438 2 0.00456621 19 2 0 0.00 DNAH9 1770 mdanderson.org 37 17 11502151 11502151 + Silent SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001372 exon1 c.G336T p.G112G TCCAGGGCCCGAC 18 3 0.17 12 0 0 0 0 TVP23C 201158 bcgsc.ca 37 17 15441469 15441469 + Splice_Site SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . GTGTTCCGCAAAA 417 11 0.03 444 7 0.0157657658 0 0 FLJ36000 0 broad.mit.edu 37 17 21911343 21911346 + RNA DEL GTTT GTTT - novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 GTTT GTTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . CTGTCGGTTTGTT 7 2 0.29 4 0 0 0 0 AP2B1 163 mdanderson.org 37 17 33984625 33984625 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001030006 exon14 c.G1804T p.A602S ACTGATGCAGGTG 92 5 0.05 143 0 0 34 0 0.00 CD300C 10871 mdanderson.org 37 17 72537829 72537829 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_006678 exon4 c.C574A p.L192M GGGGCAGCTCCAA 39 3 0.08 50 0 0 6 0 0.00 ICT1 3396 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 73016470 73016470 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 ICT1,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1 ICT1 NM_001545 exon4 c.C346T p.R116W CCCGTGCGGCAGA 149 10 0.07 166 0 0 0 1 68 7 0.10 TRIM65 201292 mdanderson.org 37 17 73888874 73888874 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001256124 exon2 c.C472A p.Q158K GTAGCTGGCCTTC 28 4 0.14 23 0 0 8 0 0.00 AP3D1 8943 broad.mit.edu 37 19 2116651 2116651 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 AP3D1,NS,carcinoma,+1,1 AP3D1 NM_001261826 exon17 c.C1954A p.R652S TGGGACGCCGCTG 83 4 0.05 95 0 0 81 1 26 0 0.00 TMIGD2 126259 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 4292623 4292623 + Silent SNP T T C novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_144615 exon5 c.A822G p.K274K GAACCCTTTTGGC 93 4 0.04 81 0 0 16 0 0.00 PTPRS 5802 broad.mit.edu 37 19 5212058 5212058 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . PTPRS NM_002850 exon32 c.C4973A p.A1658E CTGCGTGCGGGCA 54 3 0.06 69 0 0 169 13 0 0.00 EVI5L 115704 mdanderson.org 37 19 7927945 7927945 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001159944 exon17 c.G2035T p.E679X GAGCTGGAGATCC 13 2 0.15 16 0 0 14 0 0.00 CCDC105 126402 mdanderson.org 37 19 15122038 15122038 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_173482 exon1 c.G401T p.R134L GAGCGCGCCTCAC 23 2 0.09 35 1 0.0285714286 0 0 FAM187B 148109 mdanderson.org 37 19 35719549 35719549 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_152481 exon1 c.C35A p.A12D GGGGCAGCAAAGT 39 3 0.08 62 0 0 0 0 TMEM147 10430 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36038332 36038332 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . TMEM147 NM_032635 exon7 c.G658T p.V220F GCCGTTGTCAATG 72 6 0.08 88 0 0 13 347 97 0.28 ZNF585A 199704 broad.mit.edu 37 19 37643731 37643731 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . ZNF585A NM_199126 exon6 c.C905A p.T302N CACTCAGTACATA 144 5 0.03 109 0 0 117 0 0 PSG6 5675 mdanderson.org 37 19 43411800 43411800 + Nonsense_Mutation SNP C C A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_002782 exon4 c.G913T p.G305X AGGGTCCTGTTTC 66 4 0.06 51 0 0 0 0 NLRP9 338321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56223293 56223293 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_176820 exon8 c.G2716A p.A906T CTGCGGCGATGTC 128 8 0.06 147 0 0 486 93 0.19 . 400986 broad.mit.edu 37 2 96643928 96643928 + Missense_Mutation SNP T T A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . AATTAGTTCAAAA 62 5 0.08 64 0 0 0 0 ANKRD36B 57730 broad.mit.edu 37 2 98192550 98192550 + RNA DEL T T - rs370632971 TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . TGACTATTAAAAA 10 4 0.40 5 0 0 0 0 CPS1 1373 broad.mit.edu 37 2 211507237 211507237 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . CPS1 NM_001122633 exon26 c.G3007T p.V1003F TGTGCTGTCTCTA 163 5 0.03 160 0 0 485 3 0 0.00 SNED1 25992 mdanderson.org 37 2 241979822 241979822 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001080437 exon8 c.G1265T p.C422F TTCGCTGTGAGAC 47 3 0.06 47 0 0 0 0 NCOA6 23054 broad.mit.edu 37 20 33345723 33345723 + Silent SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . NCOA6 NM_014071 exon7 c.G828A p.Q276Q TTGTTGCTGCTGC 82 5 0.06 81 2 0.024691358 219 0 0 COL9A3 1299 mdanderson.org 37 20 61461161 61461161 + Missense_Mutation SNP G G A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001853 exon22 c.G1151A p.R384Q GCCACCGGGGCTC 44 3 0.07 40 0 0 6 0 0.00 IGSF11 152404 broad.mit.edu 37 3 118623632 118623632 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . IGSF11 NM_001015887 exon6 c.C717A p.N239K TCCAATGTTCCTG 341 4 0.01 389 0 0 122 0 0 MFSD7 84179 mdanderson.org 37 4 676590 676590 + Missense_Mutation SNP T T C novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_032219 exon9 c.A1241G p.E414G GGATCCTCCCCCT 39 3 0.08 47 0 0 12 0 0.00 RBM46 166863 broad.mit.edu 37 4 155720331 155720331 + Silent SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . RBM46 NM_144979 exon4 c.C1017T p.S339S AGAGAGCCACCCA 254 5 0.02 291 1 0.0034364261 76 3 0 0.00 PRRC2A 7916 mdanderson.org 37 6 31595777 31595777 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_004638 exon12 c.C1526T p.A509V AGCCTGCTGCCCC 39 3 0.08 52 0 0 14 0 0.00 BEND3 57673 mdanderson.org 37 6 107390550 107390550 + Silent SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001080450 exon5 c.C1845A p.R615R GTAGTGGCGGATG 42 3 0.07 54 0 0 4 0 0.00 GPC2 221914 mdanderson.org 37 7 99769823 99769823 + Missense_Mutation SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_152742 exon6 c.G910A p.A304T TATCAGCCAGGAT 45 3 0.07 53 0 0 26 0 0.00 GIGYF1 64599 mdanderson.org 37 7 100279560 100279560 + Silent SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_022574 exon23 c.C2982A p.T994T GAGTTTGGTGCTG 38 3 0.08 33 0 0 120 0 0.00 FAM185A 222234 broad.mit.edu 37 7 102401776 102401776 + Silent SNP T T G rs2537454 TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . FAM185A NM_001145268 exon4 c.T711G p.G237G AGATGGTTTGCTG 457 5 0.01 432 1 0.0023148148 10 3 0 0.00 KCND2 3751 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 120385930 120385930 + Missense_Mutation SNP C C A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . KCND2 NM_012281 exon5 c.C1564A p.Q522K TCTTCACAACAAG 235 22 0.09 240 1 0.0041666667 194 0 0 SGK223 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 8234017 8234017 + Silent SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001080826 exon2 c.G1902A p.Q634Q CCGGCACTGACGA 151 10 0.07 135 0 0 1 0 0.00 RP1L1 94137 bcgsc.ca 37 8 10465990 10465990 + Missense_Mutation SNP T T C rs200622636 bycluster;byfrequency TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . RP1L1 NM_178857 exon4 c.A5618G p.D1873G TCTACATCTTCTG 87 14 0.16 79 0 0 453 0 0 PDE7A 5150 broad.mit.edu 37 8 66695027 66695027 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . PDE7A NM_001242318 exon2 c.C190A p.R64S GCATACGAATGTA 377 6 0.02 324 1 0.0030864198 78 2 0 0.00 CRH 1392 mdanderson.org 37 8 67089599 67089599 + Silent SNP C C T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_000756 exon2 c.G114A p.P38P GTGCTGCGGCGCC 15 2 0.13 12 0 0 0 0 FAM122A 116224 mdanderson.org 37 9 71395191 71395191 + Missense_Mutation SNP C C A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_138333 exon1 c.C111A p.S37R TAACAGCGCCCCC 48 3 0.06 63 0 0 9 0 0.00 C9orf57 138240 mdanderson.org 37 9 74667321 74667321 + Missense_Mutation SNP C C T rs372012691 alternate_allele TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 C9orf57_ENST00000377024,NS,carcinoma,0,2 C9orf57_ENST00000377024 NM_001128618 exon5 c.G377A p.C126Y TTTGTGCAGCCTT 95 5 0.05 85 0 0 0 2 0 0 ZNF883 169834 broad.mit.edu 37 9 115760275 115760276 + RNA DEL TT TT - novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_001101338 exon5 c.264_265del p.88_89del GGACTCTTTGATG 136 9 0.07 152 0 0 4 0 0.00 NTNG2 84628 broad.mit.edu 37 9 135073687 135073687 + Missense_Mutation SNP G G A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 NTNG2,NS,carcinoma,-1,1 NTNG2 NM_032536 exon3 c.G548A p.R183H GGGCCCGCGACAT 64 3 0.05 58 0 0 66 1 1 0 0.00 NOTCH1 4851 mdanderson.org 37 9 139412617 139412617 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_017617 exon7 c.C1227A p.C409X CTGGCTGCAGGCC 39 3 0.08 41 0 0 0 0 RNR1 6052 hgsc.bcm.edu 37 MT 754 754 + RNA SNP A A G rs201831870 alternate_allele TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . . . . . GGAACAAGCATCA 278 123 0.44 234 0 0 0 0 NUDT10 170685 broad.mit.edu 37 X 51076095 51076095 + Missense_Mutation SNP C C A novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . NUDT10 NM_153183 exon2 c.C278A p.T93K ACAGAACGTACGT 358 6 0.02 331 1 0.003021148 28 8 0 0.00 ZNF711 7552 mdanderson.org 37 X 84510318 84510318 + Missense_Mutation SNP G G T novel TCGA-VF-A8AE-01A-11D-A435-10 TCGA-VF-A8AE-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd37d4b1-1965-4ebc-8f2b-dca4866f2253 f62cd451-1502-489e-b70d-1fbff4f809d1 . . NM_021998 exon4 c.G133T p.V45F GTTTCAGTTCCTG 126 5 0.04 151 0 0 0 0