Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SCNN1D 6339 broad.mit.edu 37 1 1221416 1221416 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SCNN1D NM_001130413 exon7 c.G669A p.L223L GGAGCTGCTCACC 100 3 0.03 110 0 0 60 0 0 SKI 6497 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 2235825 2235825 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SKI NM_003036 exon5 c.C1568T p.S523L TGCCCTCGGCCGT 57 28 0.49 78 1 0.0128205128 33 24 13 0.54 PLOD1 5351 broad.mit.edu 37 1 12034807 12034808 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLOD1 NM_000302 exon19 c.2126_2127insG p.E709fs ACCATGAGGGGCT 327 7 0.02 283 0 0 75 375 0 0.00 TMEM82 388595 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 16069671 16069671 + Silent SNP G G A rs138383534 bycluster;byfrequency;by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001013641 exon3 c.G318A p.T106T GTCCACGCTGCTG 38 8 0.21 24 0 0 0.003 0 0 FBLIM1 54751 broad.mit.edu 37 1 16091540 16091540 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FBLIM1 NM_001024215 exon2 c.G62T p.R21L CCCCGCGCCGCGA 62 3 0.05 53 0 0 46 85 0 0.00 NBPF1 55672 broad.mit.edu 37 1 16907261 16907262 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . CAGCATCCTGACA 1154 3 0.00 1116 0 0 0 0 PADI6 353238 broad.mit.edu 37 1 17718621 17718621 + RNA SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PADI6 NM_207421 exon9 c.G975A p.L325L GCAGCTGCAGGGT 290 4 0.01 273 1 0.0036630037 51 0 0 UBR4 23352 broad.mit.edu 37 1 19482779 19482779 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UBR4 NM_020765 exon42 c.G6058A p.A2020T AGTCTGCGGTGAC 317 6 0.02 296 2 0.0067567568 415 1 0 0.00 SLC30A2 7780 broad.mit.edu 37 1 26368222 26368222 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC30A2 NM_001004434 exon6 c.C807A p.I269I TCTCAGGATGGTC 247 6 0.02 104 0 0 29 8 0 0.00 FAM46B 115572 broad.mit.edu 37 1 27332836 27332836 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 FAM46B,NS,carcinoma,+1,1 FAM46B NM_052943 exon2 c.C877A p.R293R TGGGCCGGGGCCG 161 3 0.02 76 0 0 44 1 484 0 0.00 MECR 51102 broad.mit.edu 37 1 29522739 29522739 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MECR NM_016011 exon8 c.A862G p.M288V TGGCCATCCCCCC 391 8 0.02 206 2 0.0097087379 31 161 0 0.00 MATN1 4146 broad.mit.edu 37 1 31194457 31194458 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MATN1 NM_002379 exon2 c.236_237insC p.R79fs CCCACCCGGGTGG 260 6 0.02 141 0 0 28 0 0 KPNA6 23633 broad.mit.edu 37 1 32623874 32623874 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KPNA6 NM_012316 exon5 c.G338T p.S113I AGCCTAGTCCTCC 304 5 0.02 196 2 0.0102040816 34 20 0 0.00 TSSK3 81629 broad.mit.edu 37 1 32829624 32829624 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TSSK3 NM_052841 exon2 c.G574T p.D192Y AAAGGTGATGTCT 245 7 0.03 157 2 0.0127388535 22 7 0 0.00 YARS 8565 broad.mit.edu 37 1 33241605 33241605 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . YARS NM_003680 exon13 c.C1564A p.L522M CTTTCAGCGATTT 233 4 0.02 144 0 0 34 1759 0 0.00 ZMYM1 79830 broad.mit.edu 37 1 35579584 35579584 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZMYM1 NM_024772 exon10 c.G2153T p.S718I ATGATAGCACCAC 664 6 0.01 370 1 0.0027027027 86 23 0 0.00 KIAA0319L 79932 broad.mit.edu 37 1 35944611 35944611 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KIAA0319L NM_024874 exon4 c.C869A p.P290H GGGGTAGGGGTAG 222 4 0.02 114 0 0 156 5 0 0.00 DNALI1 7802 broad.mit.edu 37 1 38027269 38027269 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNALI1 NM_003462 exon4 c.G575T p.S192I ACGAGAGCAGCGT 249 4 0.02 142 0 0 25 58 0 0.00 FHL3 2275 broad.mit.edu 37 1 38465022 38465022 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FHL3 NM_004468 exon2 c.G63T p.Q21H GTCTGTCTGGATG 225 3 0.01 143 0 0 9 63 0 0.00 MACF1 23499 broad.mit.edu 37 1 39852903 39852903 + Nonsense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MACF1 NM_012090 exon54 c.C8203T p.Q2735X ACCCAGCAGTTCC 240 4 0.02 147 0 0 909 4 0 0.00 OXCT2 64064 broad.mit.edu 37 1 40235515 40235515 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OXCT2 NM_022120 exon1 c.C1413A p.A471A AAACACGGCCTTC 969 8 0.01 464 0 0 12 32 0 0.00 RIMS3 9783 broad.mit.edu 37 1 41094487 41094487 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RIMS3 NM_014747 exon7 c.C709A p.L237M CCTGCAGCACCTT 203 5 0.02 100 0 0 44 11 0 0.00 SZT2 23334 broad.mit.edu 37 1 43868912 43868912 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SZT2_ENST00000562955,NS,carcinoma,+1,4 SZT2 NM_015284 exon2 c.G92A p.R31H ATGTTCGCCTGGC 263 4 0.02 146 0 0 383 4 3 0 0.00 ATP6V0B 533 broad.mit.edu 37 1 44442294 44442294 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ATP6V0B NM_004047 exon5 c.G311T p.G104V TCTACGGCATCAT 259 4 0.02 164 0 0 22 1048 0 0.00 BEST4 266675 broad.mit.edu 37 1 45250928 45250928 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 BEST4,colon,carcinoma,0,1 BEST4 NM_153274 exon6 c.G764A p.R255H AACTGGCGGCCAA 687 8 0.01 378 0 0 20 1 3 0 0.00 PTCH2 8643 broad.mit.edu 37 1 45294672 45294672 + Silent SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PTCH2 NM_003738 exon11 c.G1446T p.L482L GCCAGGCAGAGCC 240 5 0.02 159 2 0.0125786164 96 46 0 0.00 MUTYH 4595 broad.mit.edu 37 1 45796995 45796995 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MUTYH NM_001128425 exon14 c.C1335A p.T445T AGAGAAGGTGTGG 214 3 0.01 111 0 0 38 202 0 0.00 EFCAB14 9813 broad.mit.edu 37 1 47154204 47154204 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_014774 exon7 c.C808A p.L270I TGTGAAGGTACAG 273 4 0.01 164 0 0 13 0 0.00 CDCP2 200008 broad.mit.edu 37 1 54605300 54605300 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CDCP2 NM_201546 exon4 c.C1243A p.L415I GAAGGAGCTGGAG 261 5 0.02 192 1 0.0052083333 52 0 0 INADL 10207 broad.mit.edu 37 1 62261198 62261198 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . INADL NM_176877 exon10 c.G1228T p.G410C CACAATGGCCACA 214 5 0.02 165 0 0 179 10 0 0.00 LRRC40 55631 broad.mit.edu 37 1 70650540 70650540 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LRRC40 NM_017768 exon4 c.C465A p.C155X ATACAGGCACTTC 226 4 0.02 179 0 0 66 24 0 0.00 USP33 23032 broad.mit.edu 37 1 78194095 78194096 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . USP33 NM_201626 exon11 c.1113_1114insA p.K371fs ATTAATCTTATTG 263 6 0.02 155 0 0 87 34 0 0.00 PKN2 5586 broad.mit.edu 37 1 89270133 89270134 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PKN2 NM_006256 exon9 c.1341_1342insT p.K447fs TGTAAAATTTCTG 325 7 0.02 218 0 0 109 8 0 0.00 GBP2 2634 broad.mit.edu 37 1 89579899 89579900 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 GBP2,NS,malignant_melanoma,+1,1 GBP2 NM_004120 exon7 c.949_950insC p.L317fs GGGCCAAGGCCAG 429 7 0.02 298 0 0 58 1 19 0 0.00 PRPF38B 55119 broad.mit.edu 37 1 109238796 109238796 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PRPF38B NM_018061 exon3 c.G477T p.A159A TAGAGCGCTTGGA 403 10 0.02 290 1 0.0034482759 55 51 0 0.00 STXBP3 6814 broad.mit.edu 37 1 109350028 109350028 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . STXBP3 NM_007269 exon18 c.G1541T p.R514L GTGCTCGCCAGAA 239 3 0.01 129 1 0.007751938 44 94 0 0.00 AKNAD1 254268 broad.mit.edu 37 1 109377673 109377673 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . AKNAD1 NM_152763 exon8 c.C1542A p.P514P CTCCTTGGGAATC 296 4 0.01 208 0 0 83 0 0 KCNC4 3749 hgsc.bcm.edu 37 1 110768693 110768694 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KCNC4 NM_001039574 exon3 c.1712_1713insC p.R571fs AGGAGCGCCGGGC 199 11 0.06 139 0 0 113 16 0 0.00 OVGP1 5016 bcgsc.ca 37 1 111957533 111957533 + Silent SNP C C T rs112145355 bycluster TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OVGP1 NM_002557 exon11 c.G1590A p.Q530Q CACAGACTGATGA 192 35 0.18 120 2 0.0166666667 177 1 0 0.00 CD101 9398 broad.mit.edu 37 1 117564466 117564466 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CD101 NM_001256109 exon7 c.G2289A p.L763L TCAGCTGCACATT 243 4 0.02 183 1 0.0054644809 95 4 0 0.00 PDE4DIP 9659 broad.mit.edu 37 1 144882849 144882849 + Missense_Mutation SNP G G A rs150222697 bycluster TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PDE4DIP_ENST00000369356,NS,carcinoma,+1,2 PDE4DIP NM_001198832 exon27 c.C3368T p.A1123V AGCTCCGCATTCT 356 6 0.02 256 1 0.00390625 817 2 0 0 PDE4DIP 9659 broad.mit.edu 37 1 144921887 144921887 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PDE4DIP NM_001002811 exon5 c.C1631A p.A544D GCTGCAGCCTCTA 312 3 0.01 222 1 0.0045045045 817 20 0 0.00 SNX27 81609 broad.mit.edu 37 1 151665438 151665438 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SNX27 NM_030918 exon10 c.G1441T p.E481X ACAGATGAAGAAG 233 4 0.02 204 2 0.0098039216 44 7 0 0.00 TDRKH 11022 broad.mit.edu 37 1 151751708 151751708 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TDRKH NM_001083965 exon5 c.C432T p.G144G TGTCTCGCCGCCT 188 3 0.02 138 0 0 45 10 0 0.00 LOR 4014 broad.mit.edu 37 1 153233476 153233476 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LOR NM_000427 exon2 c.G51T p.V17V CTGCGTGAAGACC 206 4 0.02 155 1 0.0064516129 19 0 0 BCAN 63827 broad.mit.edu 37 1 156626126 156626126 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 BCAN,NS,carcinoma,+2,1 BCAN NM_021948 exon9 c.G1995T p.E665D GGAGGAGGAAGGG 224 3 0.01 140 0 0 174 1 4 0 0.00 NTRK1 4914 broad.mit.edu 37 1 156846300 156846300 + Nonsense_Mutation SNP G G T rs150579345 bycluster;byfrequency;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 NTRK1_ENST00000392302,NS,carcinoma,-2,2 NTRK1 NM_002529 exon14 c.G1741T p.E581X TGCACCGAGGGCC 173 3 0.02 108 0 0 287 2 0 0 NR1I3 0 broad.mit.edu 37 1 161202704 161202704 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 NR1I3_ENST00000428574,NS,carcinoma,0,2 NR1I3 NM_001077481 exon5 c.C441A p.P147P GGGCAAGGGCTGG 261 3 0.01 178 0 0 74 2 5 0 0.00 FCGR3A 2214 broad.mit.edu 37 1 161518226 161518226 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FCGR3A NM_000569 exon3 c.C412A p.L138I CTTCTAGCTGCAC 629 7 0.01 480 4 0.0083333333 38 14 0 0.00 FCRLB 127943 broad.mit.edu 37 1 161697415 161697415 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FCRLB NM_001002901 exon6 c.G1244T p.S415I CTGTGAGCCCGGG 276 4 0.01 179 1 0.0055865922 35 1 0 0.00 PBX1 5087 broad.mit.edu 37 1 164815847 164815847 + Frame_Shift_Del DEL T T - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PBX1 NM_002585 exon9 c.1227delT p.T409fs TGCTACTACCCCT 252 7 0.03 146 0 0 60 143 0 0.00 KLHL20 27252 broad.mit.edu 37 1 173743459 173743459 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KLHL20 NM_014458 exon9 c.G1311T p.E437D GAAGGAGAACAAG 172 3 0.02 120 0 0 54 13 0 0.00 RABGAP1L 9910 broad.mit.edu 37 1 174516980 174516980 + Missense_Mutation SNP G G T rs190670221 by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RABGAP1L . . . . GCAACAGATGAAA 229 5 0.02 147 1 0.0068027211 103 0 0 ASTN1 460 broad.mit.edu 37 1 176852036 176852036 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ASTN1 NM_207108 exon20 c.C3321A p.I1107I CAGAGAGATGGTG 246 4 0.02 161 0 0 314 7 0 0.00 RASAL2 9462 broad.mit.edu 37 1 178426900 178426900 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RASAL2 NM_170692 exon14 c.G2473T p.A825S CAGCAAGCCTCCT 191 4 0.02 163 0 0 334 17 0 0.00 NPHS2 7827 broad.mit.edu 37 1 179533849 179533849 + Silent SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NPHS2 NM_014625 exon2 c.T354C p.P118P GGAAAAAGGGAAG 238 9 0.04 171 0 0 46 0 0 CEP350 9857 broad.mit.edu 37 1 180063647 180063648 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CEP350 NM_014810 exon34 c.8407_8408insA p.Q2803fs CTATCCCAAAATG 369 6 0.02 256 0 0 418 16 0 0.00 CEP350 9857 broad.mit.edu 37 1 180068046 180068046 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CEP350 NM_014810 exon37 c.C9115T p.P3039S AAGGAGCCAAACC 318 4 0.01 231 1 0.0043290043 418 25 0 0.00 LHX4 89884 broad.mit.edu 37 1 180199672 180199672 + Missense_Mutation SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LHX4 NM_033343 exon1 c.A8G p.Q3R TGATGCAGAGTGC 143 4 0.03 118 0 0 36 0 0 DHX9 1660 broad.mit.edu 37 1 182825677 182825677 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DHX9 NM_001357 exon7 c.G637T p.A213S TTTATTGCAGAAA 202 6 0.03 110 0 0 114 68 0 0.00 KIF21B 23046 broad.mit.edu 37 1 200948728 200948728 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KIF21B NM_001252102 exon30 c.C4095A p.S1365S GGACACGGAGAAC 187 5 0.03 164 0 0 208 4 0 0.00 CHIT1 1118 broad.mit.edu 37 1 203198779 203198779 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CHIT1 . . . . TCAGCGGCAGGCT 237 4 0.02 150 0 0 61 0 0 PLEKHA6 22874 broad.mit.edu 37 1 204192650 204192651 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLEKHA6 NM_014935 exon22 c.3095_3096insC p.L1032fs GACGACAGGGGGT 248 7 0.03 216 0 0 115 2 0 0.00 NUAK2 81788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205274386 205274386 + Missense_Mutation SNP T T A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_030952 exon6 c.A764T p.H255L ATCTTATGGTCAT 97 14 0.14 72 0 0 4 0 0.00 RASSF5 83593 mdanderson.org 37 1 206681029 206681029 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_182663 exon1 c.G94T p.E32X GGCCCCGAGCTAC 29 3 0.10 14 0 0 1 0 0.00 LAMB3 3914 broad.mit.edu 37 1 209805963 209805963 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LAMB3 NM_000228 exon8 c.C787A p.P263T CCCCAGGCTTGGG 276 5 0.02 196 1 0.0051020408 136 6 0 0.00 GPATCH2 55105 broad.mit.edu 37 1 217604630 217604630 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 GPATCH2,NS,carcinoma,0,1 GPATCH2 NM_018040 exon10 c.C1444A p.P482T ACCCAGGCGTCCA 296 4 0.01 197 0 0 53 1 13 0 0.00 HLX 3142 broad.mit.edu 37 1 221054601 221054602 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HLX NM_021958 exon2 c.658_659insC p.A220fs CCCTCGGCCGGCC 271 8 0.03 175 0 0 67 5 0 0.00 HLX 3142 broad.mit.edu 37 1 221057861 221057861 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HLX NM_021958 exon4 c.G1282A p.G428S AGCAGCGGCGGCG 88 3 0.03 73 1 0.0136986301 67 12 0 0.00 DNAH14 127602 broad.mit.edu 37 1 225492761 225492761 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNAH14 NM_001373 exon56 c.G8696T p.R2899M TTTTGAGGGCACG 589 4 0.01 385 0 0 300 0 0 ZNF678 339500 broad.mit.edu 37 1 227842069 227842069 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF678 NM_178549 exon4 c.C283T p.P95S CTTTTGCCAGAGC 311 5 0.02 233 0 0 137 3 0 0.00 ARF1 375 broad.mit.edu 37 1 228285565 228285565 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ARF1 NM_001024228 exon5 c.G397T p.A133S CCCAACGCCATGA 301 3 0.01 232 0 0 24 1082 0 0.00 OBSCN 84033 broad.mit.edu 37 1 228529821 228529821 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OBSCN NM_001271223 exon86 c.G20907T p.R6969R CTCAGGGCCCCCG 210 3 0.01 128 0 0 2142 15 0 0.00 ACTA1 58 broad.mit.edu 37 1 229568835 229568835 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ACTA1 NM_001100 exon2 c.C28A p.L10I ACACGAGGGCGGT 298 3 0.01 193 1 0.0051813472 65 34 0 0.00 C1orf198 84886 broad.mit.edu 37 1 230979534 230979534 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . C1orf198 NM_032800 exon3 c.C493A p.L165I ACTTGAGGGCCTG 128 4 0.03 91 0 0 29 19 0 0.00 LYST 1130 broad.mit.edu 37 1 235922556 235922556 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LYST NM_000081 exon23 c.G6597A p.V2199V TTTGACCACTGGA 259 3 0.01 170 1 0.0058823529 370 0 0 ADSS 159 broad.mit.edu 37 1 244615013 244615013 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADSS NM_001126 exon1 c.C107A p.A36E CACTGCGCACCGA 220 4 0.02 117 0 0 49 54 0 0.00 LARP4B 23185 broad.mit.edu;bcgsc.ca 37 10 871022 871031 + Frame_Shift_Del DEL AGGAGAGGAT AGGAGAGGAT - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 AGGAGAGGAT AGGAGAGGAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LARP4B NM_015155 exon13 c.1458_1467del p.486_489del TAAACCAGGAGAG 37 10 0.27 56 0 0 110 15 0 0.00 LARP4B 23185 hgsc.bcm.edu;bcgsc.ca 37 10 871042 871045 + Frame_Shift_Del DEL CTGG CTGG - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 CTGG CTGG Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LARP4B NM_015155 exon13 c.1445_1448del p.482_483del GACTGCCTGGCTC 53 19 0.36 68 0 0 110 6 0 0.00 MASTL 84930 broad.mit.edu 37 10 27475370 27475370 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MASTL NM_001172303 exon12 c.C2545T p.P849S ACTATGCCTTTCA 182 5 0.03 191 0 0 81 89 0 0.00 SVIL 6840 broad.mit.edu 37 10 29754613 29754613 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SVIL NM_021738 exon34 c.C6044A p.A2015D TCTGTGGCTGCAA 329 3 0.01 358 2 0.0055865922 226 23 0 0.00 SVIL 6840 broad.mit.edu 37 10 29812745 29812745 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SVIL NM_021738 exon15 c.C2798A p.P933H ACCAAAGGCTGCC 137 5 0.04 182 0 0 226 3 0 0.00 SVIL 6840 hgsc.bcm.edu 37 10 29813507 29813508 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SVIL NM_021738 exon14 c.2480_2481insC p.Q827fs ACTGGCTGGGACA 171 10 0.06 167 0 0 226 1 0 0.00 ANXA8L2 244 broad.mit.edu 37 10 47756087 47756087 + Missense_Mutation SNP G G A rs138417320 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ANXA8L2 NM_001630 exon7 c.G547A p.A183T CAAGACGCACAGG 852 11 0.01 815 5 0.0061349693 8 2 0 0.00 PCDH15 65217 broad.mit.edu 37 10 55568542 55568542 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PCDH15 . . . . CTGATAGCCCCAT 190 3 0.02 232 3 0.0129310345 1715 0 0 ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 61815643 61815643 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_020987 exon42 c.A12838G p.K4280E TTTCCTTGGTACT 120 63 0.53 143 0 0 14 7 0.50 DLG5 9231 mdanderson.org 37 10 79613279 79613279 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004747 exon5 c.C697A p.L233I TCAGGAGCCGGCT 21 2 0.10 24 0 0 0 0 PLCE1 51196 broad.mit.edu 37 10 95791638 95791638 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLCE1 NM_016341 exon2 c.G835T p.G279C TATTCAGGTGATA 225 5 0.02 230 2 0.0086956522 543 0 0 PDLIM1 9124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 96997861 96997861 + Missense_Mutation SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_020992 exon7 c.T811C p.F271L TCACAAACACACC 66 31 0.47 74 0 0 421 180 0.43 PGAM1 5223 broad.mit.edu 37 10 99186071 99186071 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PGAM1 NM_002629 exon1 c.G7T p.A3S ATGGCCGCCTACA 240 5 0.02 216 2 0.0092592593 11 564 3 0.01 ANKRD2 26287 broad.mit.edu 37 10 99343382 99343382 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ANKRD2 NM_020349 exon9 c.G983T p.R328L ATACCCGGCACGC 218 7 0.03 200 0 0 27 8 0 0.00 CUEDC2 79004 broad.mit.edu 37 10 104183205 104183205 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CUEDC2 NM_024040 exon9 c.C842A p.A281D TTTCTGGCTGGCT 239 6 0.03 231 1 0.0043290043 22 183 0 0.00 CCKBR 887 broad.mit.edu 37 11 6291057 6291057 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CCKBR NM_176875 exon2 c.G310T p.A104S CTGCTGGCTGTGG 147 5 0.03 157 1 0.0063694268 232 9 0 0.00 MICAL2 9645 broad.mit.edu 37 11 12263797 12263797 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MICAL2 NM_014632 exon19 c.G2374T p.E792X CTCAGAGAGCTCA 89 4 0.04 113 0 0 114 0 0 NAV2 89797 broad.mit.edu;mdanderson.org 37 11 19914121 19914121 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 NAV2,colon,carcinoma,0,1 NAV2 NM_001244963 exon7 c.G981T p.P327P CCCACCGCCAAGC 94 4 0.04 100 1 0.01 255 1 1 0 0.00 NAT10 55226 broad.mit.edu 37 11 34149080 34149080 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NAT10 NM_024662 exon12 c.T1178C p.I393T CCGCCATCCCCCT 173 9 0.05 179 2 0.0111731844 78 43 0 0.00 ELF5 2001 broad.mit.edu 37 11 34527231 34527231 + Silent SNP C C T rs368376316 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ELF5 NM_001243081 exon2 c.G96A p.S32S AGTCCACGACATC 137 3 0.02 160 2 0.0125 21 0 0 FNBP4 23360 broad.mit.edu 37 11 47744591 47744591 + Silent SNP A A T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 FNBP4,NS,carcinoma,0,1 FNBP4 NM_015308 exon15 c.T2742A p.P914P TGGTGGAGGAGGA 57 3 0.05 66 1 0.0151515152 99 1 69 0 0.00 PTGDR2 11251 broad.mit.edu;mdanderson.org 37 11 60620083 60620083 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004778 exon2 c.C1113A p.G371G CAGCCAGCCGAGG 12 2 0.17 15 0 0 0 0 FLRT1 23769 mdanderson.org 37 11 63884330 63884330 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_013280 exon2 c.G591T p.P197P GCTGCCGCACACG 38 3 0.08 32 0 0 1 0 0.00 PYGM 5837 broad.mit.edu 37 11 64521405 64521405 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PYGM NM_005609 exon10 c.G1185A p.T395T CAGCAGCGTCTCC 158 3 0.02 168 0 0 77 1 0 0.00 TCIRG1 10312 mdanderson.org 37 11 67818094 67818094 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_006019 exon19 c.G2377T p.G793X ATGGAGGGACTCT 54 3 0.06 45 1 0.0222222222 59 0 0.00 TMEM135 65084 broad.mit.edu 37 11 87006865 87006865 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TMEM135 NM_022918 exon7 c.G551T p.R184M CACTTAGGTAAGA 334 9 0.03 301 2 0.0066445183 40 0 0 BIRC2 329 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 102221221 102221221 + Missense_Mutation SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001256163 exon2 c.A636G p.I212M TTATATAGGACCT 133 12 0.09 121 0 0 14 3 0.21 BIRC2 329 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 102221245 102221245 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001256163 exon2 c.C660T p.C220C AGCCTGCTTTGCC 129 10 0.08 128 0 0 22 3 0.14 RNF214 257160 broad.mit.edu 37 11 117105020 117105020 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RNF214 NM_207343 exon2 c.C32T p.A11V TTGTGGCCAATGC 287 4 0.01 353 1 0.0028328612 54 13 0 0.00 SC5D 6309 broad.mit.edu 37 11 121177795 121177795 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001024956 exon5 c.G474T p.K158N TTGGAAGATTCCT 216 5 0.02 261 2 0.0076628352 109 0 0.00 OR8B3 390271 broad.mit.edu 37 11 124267204 124267204 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OR8B3 NM_001005467 exon1 c.C44A p.A15D AATCCAGCAAGAA 146 4 0.03 167 0 0 36 0 0 RAD52 5893 broad.mit.edu 37 12 1025813 1025813 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RAD52 NM_134424 exon8 c.C717T p.C239C GGAGCTGCAGTCC 249 4 0.02 88 1 0.0113636364 27 27 0 0.00 NRIP2 83714 broad.mit.edu 37 12 2944011 2944011 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NRIP2 NM_031474 exon1 c.C139A p.P47T CTGCTGGAGGAGT 307 4 0.01 97 1 0.0103092784 21 8 0 0.00 VWF 7450 broad.mit.edu 37 12 6076729 6076729 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 VWF,NS,NS,0,1 VWF NM_000552 exon47 c.C7810A p.R2604S TGCAGCGGCAGGT 297 3 0.01 100 0 0 338 1 145 0 0.00 CD9 928 broad.mit.edu 37 12 6344654 6344654 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CD9 NM_001769 exon6 c.G460T p.G154C TGCTGTGGTTTGG 326 6 0.02 96 1 0.0104166667 24 4845 3 0.00 SCNN1A 0 broad.mit.edu 37 12 6483687 6483687 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SCNN1A NM_001159576 exon1 c.C440A p.A147E AGCACTGCCCAGA 304 5 0.02 91 0 0 54 81 0 0.00 IFFO1 25900 broad.mit.edu 37 12 6649685 6649685 + Silent SNP G G T rs201420908 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IFFO1 NM_001193457 exon10 c.C1680A p.S560S GCGATCGGAGTCC 399 9 0.02 117 0 0 55 79 0 0.00 ACRBP 84519 broad.mit.edu 37 12 6749616 6749616 + Nonsense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ACRBP NM_032489 exon7 c.C1150T p.Q384X GGCACTGCTCCAG 313 5 0.02 102 0 0 52 2 0 0.00 ZNF384 0 broad.mit.edu 37 12 6787518 6787518 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF384 NM_133476 exon6 c.G461A p.G154D TGTGAGCCAGGGG 308 6 0.02 91 0 0 102 89 0 0.00 A2M 2 broad.mit.edu 37 12 9248225 9248225 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . A2M NM_000014 exon16 c.C1923A p.D641E GATGCAGTCTTCA 535 8 0.01 170 2 0.0117647059 180 65 0 0.00 CLEC7A 64581 broad.mit.edu 37 12 10280328 10280328 + Frame_Shift_Del DEL C C - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CLEC7A . . . . TAATCTCCTCCAC 1252 13 0.01 378 0 0 55 0 0 PRH1-PRR4 0 hgsc.bcm.edu 37 12 11182927 11182927 + RNA SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . GAAAAACCAGTAA 252 15 0.06 78 0 0 0 0 PRB2 653247 broad.mit.edu 37 12 11546004 11546004 + Silent SNP A A T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PRB2 NM_006248 exon3 c.T1008A p.P336P ACCTTGAGGTTTG 1020 24 0.02 309 3 0.0097087379 168 0 0 DDX47 51202 broad.mit.edu 37 12 12974319 12974319 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DDX47 NM_201224 exon3 c.G359T p.G120V CTATTGGAGTGCA 280 4 0.01 94 0 0 37 278 0 0.00 GSG1 83445 broad.mit.edu 37 12 13243709 13243709 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GSG1 NM_001080554 exon2 c.C92A p.S31Y ATGGCAGATAGGA 285 5 0.02 102 0 0 62 18 0 0.00 RERG 85004 broad.mit.edu 37 12 15264285 15264285 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RERG NM_032918 exon4 c.C185A p.A62D TGACCAGCAGTGT 365 4 0.01 130 0 0 30 12 0 0.00 PDE3A 5139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 20769229 20769229 + Silent SNP C C G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_000921 exon4 c.C1335G p.T445T CACCACCTCGGCC 336 32 0.10 108 0 0 0 0 ST8SIA1 6489 broad.mit.edu 37 12 22354747 22354747 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 ST8SIA1,colon,carcinoma,-1,1 ST8SIA1 NM_003034 exon5 c.C810A p.A270A GCGCTTGGCATGG 295 5 0.02 92 0 0 55 1 3 0 0.00 ETNK1 55500 broad.mit.edu 37 12 22797183 22797183 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ETNK1 NM_001039481 exon3 c.G722T p.R241I CTACAAGATGTTT 269 5 0.02 124 0 0 61 9 0 0.00 MRPS35 60488 broad.mit.edu 37 12 27908360 27908360 + Frame_Shift_Del DEL A A - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 MRPS35,NS,carcinoma,-1,1 MRPS35 NM_021821 exon8 c.949delA p.K317fs TCCGTGAAGAGAC 706 9 0.01 248 0 0 26 1 610 0 0.00 TMTC1 83857 broad.mit.edu 37 12 29659824 29659825 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TMTC1 NM_001193451 exon18 c.2604_2605insG p.R868fs TTCTAGGCGATCC 488 7 0.01 170 0 0 147 40 0 0.00 KIAA1551 55196 broad.mit.edu 37 12 32135426 32135426 + Missense_Mutation SNP C C T rs146592039 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 C12orf35,NS,carcinoma,0,1 . NM_018169 exon4 c.C1537T p.R513W GAAAAGCGGCCAA 346 5 0.01 104 0 0 1 103 0 0.00 DNM1L 10059 broad.mit.edu 37 12 32861095 32861095 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNM1L NM_012062 exon4 c.G306T p.T102T TTACACGGATTTT 823 7 0.01 280 0 0 52 30 0 0.00 FAM186A 121006 broad.mit.edu 37 12 50746140 50746140 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FAM186A NM_001145475 exon4 c.G4475A p.G1492E GGGATCCCCAATT 305 10 0.03 203 1 0.0049261084 181 0 0 FAM186A 121006 broad.mit.edu 37 12 50748100 50748100 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FAM186A NM_001145475 exon4 c.C2515A p.L839I GTTTGAGACTCAT 207 3 0.01 143 0 0 181 0 0 FAM186A 121006 broad.mit.edu 37 12 50754652 50754652 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 FAM186A_ENST00000327337,colon,carcinoma,-1,1 FAM186A NM_001145475 exon3 c.C470A p.A157E ATTTGTGCTATCC 316 8 0.03 207 3 0.0144927536 181 1 0 0 BIN2 51411 broad.mit.edu 37 12 51675288 51675288 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BIN2 NM_016293 exon13 c.C1693A p.L565I TTCAGAGTTGTGG 228 6 0.03 162 2 0.012345679 58 73 0 0.00 SLC4A8 9498 broad.mit.edu 37 12 51888759 51888759 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SLC4A8,NS,carcinoma,-2,1 SLC4A8 NM_001039960 exon21 c.C2800T p.P934S GGGATGCCCGCAA 298 4 0.01 215 0 0 292 1 8 0 0.00 ESPL1 9700 broad.mit.edu 37 12 53685533 53685533 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ESPL1 NM_012291 exon26 c.G5580T p.G1860G CTACGGGCTGTGC 295 3 0.01 178 1 0.0056179775 158 89 0 0.00 AAAS 8086 broad.mit.edu 37 12 53714409 53714409 + Missense_Mutation SNP C C T rs151099565 by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . AAAS NM_015665 exon2 c.G191A p.G64D CTTGTGCCATGGT 246 6 0.02 160 1 0.00625 46 132 0 0.00 CALCOCO1 57658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54117502 54117502 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_020898 exon4 c.G325A p.V109M CACACACCTGGCC 198 36 0.18 141 0 0 14 7 0.50 HOXC11 3227 broad.mit.edu 37 12 54367267 54367267 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HOXC11 NM_014212 exon1 c.G242T p.G81V CATCCGGCAAGTG 182 3 0.02 114 1 0.0087719298 32 0 0 RDH5 5959 broad.mit.edu 37 12 56115041 56115041 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RDH5 NM_001199771 exon2 c.C73T p.P25S AGCCTGCCCGCCA 329 7 0.02 248 1 0.0040322581 25 1 0 0.00 ERBB3 2065 broad.mit.edu 37 12 56491695 56491695 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ERBB3 NM_001982 exon21 c.G2587T p.D863Y CCTGATGATAAGC 149 3 0.02 72 0 0 350 32 0 0.00 ZC3H10 84872 mdanderson.org 37 12 56514350 56514350 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_032786 exon3 c.C4T p.P2S AGGATGCCTGACC 33 3 0.09 34 1 0.0294117647 22 0 0.00 BAZ2A 11176 broad.mit.edu 37 12 57000452 57000452 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BAZ2A NM_013449 exon11 c.C2164A p.Q722K CCCGTTGAACCTT 229 5 0.02 163 0 0 263 4 0 0.00 USP15 9958 broad.mit.edu 37 12 62783665 62783666 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . USP15 NM_001252078 exon14 c.1741_1742insC p.T581fs AGTTATACCCACC 178 6 0.03 129 0 0 105 21 0 0.00 OSBPL8 114882 broad.mit.edu 37 12 76780378 76780378 + Frame_Shift_Del DEL C C - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OSBPL8 NM_020841 exon13 c.1415delG p.G472fs TAGAATCCTGACA 658 7 0.01 444 0 0 86 7 0 0.00 POC1B 282809 broad.mit.edu 37 12 89860639 89860639 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 POC1B,NS,carcinoma,+2,1 POC1B NM_172240 exon9 c.C940A p.L314I TTTTGAGATTTCT 287 5 0.02 200 0 0 41 1 9 0 0.00 SCYL2 55681 broad.mit.edu 37 12 100711674 100711674 + Missense_Mutation SNP G G T rs369328887 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SCYL2 NM_017988 exon10 c.G1366T p.A456S TACAGAGCACTAG 263 3 0.01 213 1 0.0046948357 99 9 0 0.00 ANO4 121601 broad.mit.edu 37 12 101477466 101477466 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 ANO4,NS,carcinoma,0,1 ANO4 NM_178826 exon15 c.G1301T p.R434L AAATACGACCCCA 156 3 0.02 127 0 0 183 1 0 0 MYBPC1 4604 broad.mit.edu 37 12 102053522 102053522 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MYBPC1 NM_206819 exon19 c.G1840T p.A614S GATATAGCTGAAA 192 5 0.03 148 1 0.0067567568 235 0 0 GIT2 9815 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 110376285 110376285 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_057169 exon18 c.C1903A p.P635T GAGTGGGGCTTGG 197 12 0.06 162 0 0 24 2 0.08 IFT81 28981 broad.mit.edu 37 12 110565264 110565264 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IFT81 NM_014055 exon2 c.G79T p.D27Y ACGTTTGATTCCT 374 7 0.02 263 2 0.0076045627 86 10 0 0.00 HRK 8739 broad.mit.edu 37 12 117318878 117318878 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HRK NM_003806 exon1 c.G235T p.A79S GCGCCGCCACCTG 11 2 0.18 12 0 0 1 9 0 0.00 KNTC1 9735 broad.mit.edu 37 12 123087235 123087235 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KNTC1 NM_014708 exon46 c.G4773T p.L1591L TAGACTGCCTTTT 251 7 0.03 195 0 0 182 46 0 0.00 UBC 7316 broad.mit.edu 37 12 125398024 125398024 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 UBC,colon,carcinoma,0,2 UBC NM_021009 exon2 c.C294T p.T98T CTCGATGGTGTCA 349 5 0.01 199 0 0 79 2 1355 0 0.00 GOLGA3 2802 broad.mit.edu 37 12 133351804 133351804 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GOLGA3 NM_005895 exon22 c.C4066A p.L1356M TCTTCAGCTCCGA 139 5 0.04 110 1 0.0090909091 234 26 0 0.00 CENPJ 55835 hgsc.bcm.edu;broad.mit.edu 37 13 25480948 25480948 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_018451 exon7 c.C1228A p.Q410K GCGGCTGGTCCTC 111 6 0.05 122 0 0 3 0 0.00 FLT3 2322 broad.mit.edu 37 13 28578254 28578254 + Nonsense_Mutation SNP G G A rs191501493 bycluster;by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 FLT3,colon,carcinoma,0,1 FLT3 NM_004119 exon24 c.C2917T p.R973X AAGGTCGCCTGTT 115 3 0.03 121 0 0 15525 1 3 0 0.00 KPNA3 3839 broad.mit.edu 37 13 50306542 50306543 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KPNA3 NM_002267 exon6 c.348_349insT p.L116fs AATTGGTAAAATC 399 9 0.02 451 0 0 53 8 0 0.00 SLC15A1 6564 broad.mit.edu 37 13 99371514 99371514 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC15A1 NM_005073 exon8 c.C617A p.A206D AGAGCAGCAGGAA 112 3 0.03 104 0 0 92 2 0 0.00 GRK1 6011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 114325882 114325882 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_002929 exon3 c.C896T p.A299V ACACGGCGCAGAT 25 8 0.32 30 0 0 0 0 RPGRIP1 57096 broad.mit.edu 37 14 21756201 21756201 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RPGRIP1 NM_020366 exon1 c.G66T p.L22L ACCTCTGGTGCTA 173 6 0.03 170 3 0.0176470588 213 0 0 PSME2 5721 mdanderson.org 37 14 24612871 24612871 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PSME2,NS,carcinoma,0,3 PSME2 NM_002818 exon10 c.C562T p.R188W AGGCCCGGTAATC 58 3 0.05 53 0 0 0 3 643 1 0.00 ADCY4 196883 broad.mit.edu 37 14 24795332 24795332 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADCY4 NM_001198592 exon13 c.C1608T p.T536T ATCCCCGGTGTCC 114 5 0.04 124 0 0 86 2 0 0.00 OTX2 5015 mdanderson.org 37 14 57268936 57268936 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001270525 exon3 c.C411A p.G137G GAATTGGCCACTT 59 3 0.05 58 0 0 25 0 0.00 YLPM1 56252 broad.mit.edu 37 14 75295965 75295965 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . YLPM1 NM_019589 exon19 c.G6213T p.E2071D CTGGGAGGCCATT 231 5 0.02 211 0 0 298 133 0 0.00 TECPR2 9895 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 14 102904488 102904488 + Missense_Mutation SNP C C G rs368111236 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001172631 exon10 c.C2524G p.L842V GCCGGGCTGCGCT 61 4 0.07 60 0 0 8 1 0.13 AHNAK2 113146 broad.mit.edu 37 14 105413995 105413995 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . AHNAK2 NM_138420 exon7 c.C7793A p.P2598H GCCTTGGGGCCTT 237 4 0.02 210 1 0.0047619048 719 0 0 . 0 bcgsc.ca 37 15 20433934 20433934 + RNA SNP G G A rs181123873 by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . ACCTGAGGCCGTG 179 29 0.16 322 30 0.0931677019 3 0 0.00 OR4N3P 390539 bcgsc.ca 37 15 22413817 22413817 + RNA SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TGATGGCCTTTGA 168 10 0.06 338 2 0.0059171598 0 0 PLA2G4F 255189 mdanderson.org 37 15 42439368 42439368 + Missense_Mutation SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_213600 exon13 c.T1373C p.L458P TCGATGAGGGACA 52 3 0.06 59 0 0 0 0 CAPN3 825 broad.mit.edu 37 15 42703172 42703172 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CAPN3 NM_000070 exon22 c.G2354T p.C785F TCTGCTGCTTCGT 66 5 0.08 70 0 0 172 9 0 0.00 SEMA6D 80031 broad.mit.edu 37 15 48058773 48058773 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SEMA6D NM_001198999 exon19 c.1647-1G>T . TATGAAGGCTGTT 102 4 0.04 150 0 0 322 0 0 DMXL2 23312 mdanderson.org 37 15 51791559 51791559 + Missense_Mutation SNP A A T rs12102203 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 DMXL2,NS,carcinoma,0,1 DMXL2 NM_001174116 exon18 c.T3862A p.S1288T CATTAGAACTATC 84 3 0.04 118 0 0 0 1 0 0 DYX1C1-CCPG1 100533483 hgsc.bcm.edu 37 15 55657628 55657628 + RNA SNP T T G rs200853518 bycluster TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TTTTTTTTGTTTT 61 14 0.23 55 0 0 0 0 ZNF280D 54816 broad.mit.edu 37 15 56981569 56981569 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF280D NM_017661 exon8 c.C599A p.A200E GAATTTGCTCCAG 193 5 0.03 211 1 0.0047393365 82 1 0 0.00 VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 62212292 62212292 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_020821 exon57 c.A7451G p.E2484G GAGCTTTCTTGAC 157 15 0.10 178 0 0 1 1 1.00 ZNF609 23060 broad.mit.edu 37 15 64791875 64791875 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF609 NM_015042 exon1 c.G257T p.G86V AGGAAGGCAAATC 223 3 0.01 239 0 0 106 1 0 0.00 KBTBD13 390594 broad.mit.edu 37 15 65370090 65370090 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 KBTBD13,NS,carcinoma,0,1 KBTBD13 NM_001101362 exon1 c.C937T p.R313W CTGTGGCGGCCGG 25 2 0.08 32 0 0 9 1 0 0 IDH3A 3419 mdanderson.org 37 15 78453923 78453923 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_005530 exon5 c.G290T p.G97V TAACAGGCCCTTT 43 4 0.09 46 0 0 34 0 0.00 RASGRF1 5923 broad.mit.edu 37 15 79382723 79382723 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RASGRF1 NM_001145648 exon1 c.C118A p.Q40K TGGTTTGCCATTT 42 4 0.10 48 1 0.0208333333 168 0 0 AKAP13 11214 broad.mit.edu 37 15 86266551 86266551 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . AKAP13 NM_006738 exon26 c.G6757T p.E2253X TTGAAAGGTAAGG 106 4 0.04 117 2 0.0170940171 394 2 0 0.00 CHTF18 63922 mdanderson.org 37 16 839620 839620 + Missense_Mutation SNP C C T rs373908849 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_022092 exon4 c.C511T p.P171S AGGCGGCCCCCCA 32 3 0.09 31 0 0 55 0 0.00 UBE2I 7329 broad.mit.edu 37 16 1370230 1370230 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UBE2I NM_003345 exon5 c.C279T p.C93C AGTGTGCCTGTCC 123 4 0.03 97 0 0 15 1001 1 0.00 CCDC154 645811 mdanderson.org 37 16 1484837 1484837 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001143980 exon16 c.C1709A p.A570D AGGGTGGCCATCT 35 3 0.09 23 0 0 3 0 0.00 MAPK8IP3 23162 mdanderson.org 37 16 1816287 1816287 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_015133 exon22 c.C2693T p.A898V CAGAGGCCACGGA 57 3 0.05 57 0 0 11 0 0.00 PKD1 5310 hgsc.bcm.edu 37 16 2164211 2164211 + Missense_Mutation SNP G G A rs74488735 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PKD1,NS,haematopoietic_neoplasm,0,4 PKD1 NM_000296 exon11 c.C2813T p.T938M CTGGGCGTGGCGC 33 6 0.18 36 1 0.0277777778 0 4 0 0 SLX4 84464 broad.mit.edu 37 16 3656574 3656574 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLX4 NM_032444 exon3 c.C661A p.P221T GCTCGGGGTCTGC 209 3 0.01 233 0 0 173 2 0 0.00 CORO7 79585 mdanderson.org 37 16 4414863 4414863 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_024535 exon12 c.G957A p.A319A GGCCAGCGCCTGC 45 3 0.07 27 0 0 19 0 0.00 CIITA 4261 mdanderson.org 37 16 10989249 10989249 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_000246 exon2 c.G163T p.D55Y CAGATGGACCTGG 59 3 0.05 53 0 0 0 0 ACSM2A 123876 broad.mit.edu 37 16 20477039 20477039 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ACSM2A NM_001010845 exon4 c.C378T p.C126C GGGCTGCATTCGA 290 4 0.01 330 3 0.0090909091 120 0 0 CRYM 1428 broad.mit.edu 37 16 21272608 21272608 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CRYM NM_001888 exon9 c.C847A p.H283N CACAGTGGGCTGG 138 4 0.03 132 0 0 13 190 1 0.01 PALB2 79728 broad.mit.edu 37 16 23641321 23641321 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PALB2 NM_024675 exon5 c.G2154T p.R718S GGTAGGCCTGTCA 129 5 0.04 125 4 0.032 108 8 0 0.00 SULT1A2 6799 broad.mit.edu 37 16 28604855 28604855 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SULT1A2 NM_001054 exon5 c.C407A p.A136E GAAACCGCCACAT 162 4 0.02 161 0 0 27 3 0 0.00 ASPHD1 253982 mdanderson.org 37 16 29913203 29913203 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_181718 exon1 c.G911A p.R304H AGGGCCGCTGTGG 49 3 0.06 58 0 0 42 1 0.02 PRSS53 339105 broad.mit.edu 37 16 31097418 31097418 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PRSS53 NM_001039503 exon6 c.C750A p.A250A CTCCTGGGCACAG 69 4 0.06 54 0 0 29 4 0 0.00 PRSS36 146547 broad.mit.edu 37 16 31154780 31154780 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PRSS36 NM_001258291 exon8 c.C983A p.A328D CGCGGGGCCTTCC 68 5 0.07 48 1 0.0208333333 50 1 0 0.00 ABCC11 85320 broad.mit.edu 37 16 48244964 48244964 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ABCC11 NM_033151 exon10 c.G1503A p.G501G AGCATGCCCGTTC 133 3 0.02 125 1 0.008 177 0 0 CHD9 80205 broad.mit.edu 37 16 53243477 53243477 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CHD9 NM_025134 exon3 c.G1536T p.K512N GAAGAAGCAGAGA 203 3 0.01 218 0 0 203 0 0 CDH5 1003 broad.mit.edu 37 16 66431946 66431947 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 CDH5,NS,carcinoma,+1,1 CDH5 NM_001795 exon9 c.1422_1423insA p.D474fs GAATGACAATGCC 210 0 0.00 143 0 0 111 1 10 0 0.00 ELMO3 79767 broad.mit.edu 37 16 67236569 67236569 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ELMO3 NM_024712 exon15 c.G1597T p.A533S ACTCTGGCCCTGA 172 3 0.02 164 0 0 41 29 0 0.00 RLTPR 146206 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 67683478 67683478 + Silent SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001013838 exon20 c.C1875A p.G625G CGCGGGCGCCAAG 19 9 0.47 18 0 0 11 3 0.27 EDC4 23644 mdanderson.org 37 16 67913787 67913787 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_014329 exon16 c.G1856T p.S619I GCGGTAGCAGCAG 59 5 0.08 56 0 0 38 0 0.00 CLEC18C 283971 broad.mit.edu 37 16 70211324 70211324 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CLEC18C NM_173619 exon3 c.C397T p.R133W GGGCAGCGGTACA 324 4 0.01 327 0 0 15 2 0 0.00 PKD1L3 342372 broad.mit.edu 37 16 72033512 72033513 + RNA INS - - T rs377409889 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PKD1L3 . . . . GATTTTCTTTTTT 57 9 0.16 46 0 0 67 0 0 HPR 3250 broad.mit.edu 37 16 72110394 72110394 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 HPR_ENST00000228226,NS,carcinoma,0,2 HPR NM_020995 exon5 c.C461T p.A154V AAAATGCAACAGC 364 5 0.01 383 1 0.0026109661 43 2 0 0 CHST5 23563 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 75563911 75563911 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_024533 exon3 c.C372A p.C124X CATGTCGCACAAA 116 9 0.08 109 0 0 0 0 PKD1L2 114780 broad.mit.edu 37 16 81204552 81204552 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PKD1L2 NM_001076780 exon17 c.C2906A p.A969D ACCTGGGCCGAGG 100 3 0.03 107 0 0 361 0 0 FAM92B 339145 mdanderson.org 37 16 85139014 85139014 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_198491 exon5 c.C456A p.A152A CACAGCGGCCCTC 40 3 0.08 48 0 0 0 0 INPP5K 51763 broad.mit.edu 37 17 1410277 1410277 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . INPP5K NM_016532 exon7 c.C773A p.T258N CACCTGGTGTCAT 196 4 0.02 134 0 0 30 65 0 0.00 RILP 83547 broad.mit.edu 37 17 1549758 1549758 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RILP NM_031430 exon8 c.C1184A p.A395D GCTGAGGCCCCCA 169 5 0.03 120 0 0 24 41 0 0.00 OR1D4 653166 broad.mit.edu 37 17 3144185 3144185 + RNA SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . CCTCTTCTTTGTC 472 4 0.01 356 0 0 0 0 ZZEF1 23140 broad.mit.edu 37 17 3975931 3975931 + Missense_Mutation SNP G G A rs370550753 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZZEF1 NM_015113 exon25 c.C3805T p.P1269S GAGTGGGCCAGCT 214 4 0.02 181 0 0 195 1 0 0.00 ARRB2 409 broad.mit.edu 37 17 4619841 4619841 + Missense_Mutation SNP A A C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ARRB2 NM_001257329 exon5 c.A295C p.T99P CCCCCCACCCGCC 66 21 0.32 46 14 0.3043478261 30 36 2 0.06 ZMYND15 84225 broad.mit.edu 37 17 4645281 4645281 + Missense_Mutation SNP G G A rs143837890 bycluster;byfrequency;by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZMYND15 NM_001136046 exon4 c.G899A p.R300Q GTCCCCGGCCAGG 328 4 0.01 221 0 0 87 0 0 ENO3 2027 broad.mit.edu 37 17 4858517 4858517 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ENO3 NM_001976 exon7 c.G592T p.A198S ATCAAGGCCAAGT 232 5 0.02 152 0 0 36 46 0 0.00 NLRP1 22861 broad.mit.edu 37 17 5461937 5461937 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NLRP1 NM_033007 exon4 c.G2079A p.R693R AGACAGCCGGCAG 156 3 0.02 132 1 0.0075757576 358 0 0 TEKT1 83659 broad.mit.edu 37 17 6733661 6733662 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TEKT1 NM_053285 exon2 c.35_36insC p.L12fs GAGGGCAGGAACT 448 8 0.02 287 0 0 49 0 0 DLG4 1742 broad.mit.edu 37 17 7097791 7097791 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DLG4 NM_001365 exon14 c.C1454A p.T485N TCCTTGGTCTTGT 203 5 0.02 130 2 0.0153846154 110 11 0 0.00 ACADVL 37 broad.mit.edu 37 17 7126059 7126059 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ACADVL NM_001270447 exon11 c.C1021T p.P341S CGGGTGCCATCGG 169 3 0.02 119 1 0.0084033613 43 364 0 0.00 EIF5A 1984 broad.mit.edu 37 17 7214926 7214926 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . EIF5A NM_001143760 exon5 c.G522T p.E174D AGAGGAGGCAGCT 223 3 0.01 170 0 0 28 5067 0 0.00 SHBG 6462 broad.mit.edu 37 17 7533538 7533538 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SHBG NM_001040 exon1 c.G48T p.L16L GTTGCTGCTGTTG 105 4 0.04 64 0 0 21 0 0 KRBA2 124751 broad.mit.edu 37 17 8272513 8272513 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KRBA2 NM_213597 exon2 c.C1418A p.P473H GGAGTGGGATCCA 256 6 0.02 158 0 0 34 6 0 0.00 GAS7 8522 mdanderson.org 37 17 10101685 10101685 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_201433 exon1 c.C23A p.T8N TACAGGGTCCGGC 17 2 0.12 10 0 0 11 0 0.00 MYH3 4621 broad.mit.edu 37 17 10545596 10545597 + Frame_Shift_Ins INS - - CC novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MYH3 NM_002470 exon17 c.1920_1921insGG p.K640fs ACCCTTCTTCTTG 848 4 0.00 571 0 0 227 2 0 0.00 DNAH9 1770 broad.mit.edu 37 17 11648286 11648286 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNAH9 NM_001372 exon31 c.G6284A p.G2095E TGATCGGGGACCT 236 3 0.01 173 0 0 695 0 0 COX10 1352 broad.mit.edu 37 17 14095488 14095488 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . COX10 NM_001303 exon6 c.C878T p.A293V TTGGGGCCATCCC 318 4 0.01 262 0 0 36 21 0 0.00 TTC19 54902 broad.mit.edu 37 17 15930740 15930740 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TTC19 NM_017775 exon10 c.G1047T p.K349N AGCAAAGCTGAAA 241 7 0.03 148 0 0 10 177 0 0.00 UBB 7314 broad.mit.edu 37 17 16285329 16285330 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UBB NM_018955 exon2 c.108_109insC p.I36fs AGGCATTCCCCCC 208 6 0.03 125 0 0 30 5465 0 0.00 FLII 2314 broad.mit.edu 37 17 18155412 18155412 + Missense_Mutation SNP C C T rs377757631 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 FLII,right_upper_lobe,carcinoma,+1,1 FLII NM_002018 exon11 c.G1147A p.A383T GGTCTGCGGGCTT 209 4 0.02 140 1 0.0071428571 79 1 86 0 0.00 SARM1 23098 broad.mit.edu 37 17 26712058 26712058 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SARM1 NM_015077 exon6 c.1392-1G>T . GGTGCAGGTTCTT 288 6 0.02 173 0 0 40 0 0 KIAA0100 9703 broad.mit.edu 37 17 26964021 26964021 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KIAA0100 NM_014680 exon15 c.C1939A p.L647I TGGAGAGCATGGA 238 3 0.01 162 0 0 175 13 0 0.00 CPD 1362 broad.mit.edu 37 17 28754503 28754503 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CPD NM_001304 exon7 c.G1944T p.T648T TCCTACGCAACCA 234 4 0.02 163 2 0.0122699387 89 6 0 0.00 LRRC37BP1 0 broad.mit.edu 37 17 28961033 28961033 + RNA SNP T T G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . CCAGGATATGACT 211 3 0.01 135 0 0 57 0 0.00 NF1 4763 broad.mit.edu 37 17 29664506 29664506 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NF1 NM_001042492 exon43 c.G6548T p.R2183L GTTACCGGGACAG 228 4 0.02 133 0 0 1586 6 0 0.00 CDK5R1 8851 broad.mit.edu 37 17 30815393 30815393 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CDK5R1 NM_003885 exon2 c.G755T p.S252I TGGAGAGCTGCAA 277 5 0.02 223 0 0 30 4 0 0.00 SLC35G3 146861 broad.mit.edu 37 17 33521163 33521163 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_152462 exon1 c.G164A p.G55D AGGGGGCCCACGA 141 3 0.02 82 0 0 0 0 KRT24 192666 broad.mit.edu 37 17 38854821 38854821 + Silent SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KRT24 NM_019016 exon7 c.A1443G p.S481S AGATCTTGAGTCA 510 6 0.01 317 1 0.0031545741 60 0 0 KRT15 3866 broad.mit.edu 37 17 39673161 39673161 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KRT15 NM_002275 exon3 c.C637A p.R213S CTCGGCGCAAGCC 77 3 0.04 63 1 0.0158730159 60 9 0 0.00 HAP1 9001 broad.mit.edu 37 17 39888331 39888331 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HAP1 NM_001079870 exon4 c.C778A p.L260I GGAGGAGCTCATC 161 4 0.02 109 0 0 48 1 0 0.00 GHDC 84514 broad.mit.edu 37 17 40342275 40342275 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GHDC NM_001142623 exon9 c.C1391A p.A464D AGCAGAGCCCGCA 212 3 0.01 143 0 0 63 27 0 0.00 C17orf53 78995 broad.mit.edu 37 17 42226163 42226163 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . C17orf53 NM_001171251 exon3 c.G992T p.S331I GGACTAGCTCTGG 261 9 0.03 161 1 0.0062111801 59 40 0 0.00 GRN 2896 broad.mit.edu 37 17 42427035 42427035 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GRN NM_002087 exon4 c.G265T p.A89S CCACAGGCCGTGG 231 4 0.02 130 0 0 51 226 0 0.00 HEXIM1 10614 broad.mit.edu 37 17 43227331 43227331 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HEXIM1 NM_006460 exon1 c.C774T p.D258D AGGGGACGGCAGC 207 3 0.01 156 0 0 25 29 0 0.00 WNT9B 7484 broad.mit.edu 37 17 44953813 44953813 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . WNT9B NM_003396 exon4 c.G803A p.G268D GGCAGGGCAGCCT 205 4 0.02 118 1 0.0084745763 37 0 0 NGFR 4804 broad.mit.edu 37 17 47590258 47590258 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NGFR NM_002507 exon6 c.G1171T p.A391S AGCTGGGCCACCC 151 6 0.04 93 2 0.0215053763 46 32 0 0.00 SLC35B1 10237 broad.mit.edu 37 17 47780277 47780277 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC35B1 NM_005827 exon8 c.C859A p.L287I CGAAGAGGATCAC 234 4 0.02 154 0 0 21 813 0 0.00 DLX3 1747 hgsc.bcm.edu 37 17 48069062 48069063 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DLX3 NM_005220 exon3 c.683_684insC p.R228fs TGACTGCGGGCAG 127 8 0.06 77 0 0 28 1 0 0.00 TOB1 10140 broad.mit.edu 37 17 48941031 48941031 + Silent SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TOB1 NM_005749 exon2 c.T348C p.D116D ATTATTATCATCC 274 3 0.01 216 0 0 40 52 0 0.00 PPM1E 22843 hgsc.bcm.edu 37 17 56833454 56833454 + Silent SNP G G A rs77856248 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PPM1E,colon,carcinoma,0,1 PPM1E NM_014906 exon1 c.G96A p.E32E GCCGGAGCCGGAA 212 15 0.07 122 0 0 0 1 0 0 USP32 84669 broad.mit.edu 37 17 58286906 58286906 + Splice_Site DEL T T - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . USP32 NM_032582 exon23 c.2425-2A>- . GTCCACTATAAAT 584 7 0.01 416 0 0 128 1 0 0.00 CEP112 201134 broad.mit.edu 37 17 64026113 64026113 + Missense_Mutation SNP C C T rs369403378 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 CEP112_ENST00000392769,NS,carcinoma,0,2 CEP112 NM_001199165 exon13 c.G1247A p.R416H TGGACACGGGCCT 198 3 0.02 107 2 0.0186915888 192 2 4 0 0.00 ABCA5 23461 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 67251698 67251698 + Missense_Mutation SNP G G C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ABCA5 NM_018672 exon30 c.C4054G p.P1352A AAGTTGGTTCAAT 596 17 0.03 438 0 0 162 3 0 0.00 SPHK1 8877 broad.mit.edu 37 17 74382929 74382929 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SPHK1,NS,carcinoma,0,1 SPHK1 NM_182965 exon6 c.G675T p.T225T CTGCACGCTATTG 123 3 0.02 71 0 0 24 1 36 0 0.00 ST6GALNAC1 55808 broad.mit.edu 37 17 74625146 74625146 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ST6GALNAC1 NM_018414 exon2 c.C779A p.P260H CACCGAGGCTCAG 275 4 0.01 205 0 0 42 2 0 0.00 MGAT5B 146664 broad.mit.edu 37 17 74928843 74928843 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MGAT5B NM_198955 exon10 c.G1441T p.A481S AAGGAGGCGAGCA 181 3 0.02 133 0 0 98 1 0 0.00 B3GNTL1 146712 broad.mit.edu 37 17 80915311 80915311 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . B3GNTL1 NM_001009905 exon9 c.C785A p.A262E AAGGCCGCCCAGC 178 4 0.02 113 0 0 40 4 0 0.00 PTPRM 5797 broad.mit.edu 37 18 7774226 7774226 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PTPRM,NS,carcinoma,+2,1 PTPRM NM_001105244 exon2 c.G153T p.V51V GCAAGTGAACACC 152 4 0.03 137 0 0 185 1 2 0 0.00 CEP192 55125 broad.mit.edu 37 18 13048962 13048962 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CEP192 NM_032142 exon16 c.G2172T p.E724D TGCAGAGGCATCA 139 3 0.02 131 1 0.0076335878 340 2 0 0.00 SLC14A2 8170 broad.mit.edu 37 18 43248365 43248365 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SLC14A2,NS,carcinoma,+2,1 SLC14A2 NM_001242692 exon16 c.G1959A p.L653L GGGGCTGCTGATG 143 4 0.03 135 0 0 121 1 1 0 0.00 EPG5 57724 broad.mit.edu 37 18 43464694 43464694 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . EPG5 NM_020964 exon30 c.C5192A p.S1731Y AAAGGAGACAGCA 102 4 0.04 109 0 0 199 1 0 0.00 EPG5 57724 broad.mit.edu 37 18 43519645 43519645 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 EPG5,NS,carcinoma,+2,1 EPG5 NM_020964 exon10 c.C2020A p.P674T AGTAGGGCTGTTG 269 7 0.03 282 0 0 199 1 2 0 0.00 ATP8B1 5205 broad.mit.edu 37 18 55355660 55355660 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 ATP8B1,NS,carcinoma,0,2 ATP8B1 NM_005603 exon13 c.G1300A p.A434T CTTTTGCGGGTGT 215 5 0.02 208 1 0.0048076923 126 2 2 0 0.00 CAMSAP3 57662 mdanderson.org 37 19 7680360 7680360 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001080429 exon15 c.C2948T p.A983V CGATGGCGACTCC 30 3 0.10 16 0 0 24 0 0.00 MYO1F 4542 broad.mit.edu 37 19 8609310 8609310 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MYO1F NM_012335 exon14 c.C1395T p.C465C GGTGGCGCACACG 63 3 0.05 56 0 0 128 5 0 0.00 OR2Z1 284383 broad.mit.edu 37 19 8841539 8841539 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 OR2Z1,NS,carcinoma,0,1 OR2Z1 NM_001004699 exon1 c.G149A p.R50H TGATCCGTGTGGA 199 3 0.02 187 0 0 53 1 0 0 MAST1 22983 broad.mit.edu 37 19 12969240 12969240 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MAST1 NM_014975 exon11 c.G1142T p.S381I TCATAAGCAACGG 181 3 0.02 156 0 0 214 1 0 0.00 ATP13A1 57130 mdanderson.org 37 19 19767903 19767903 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_020410 exon5 c.C806A p.T269K GATAGCGTAAAGA 49 3 0.06 63 0 0 13 0 0.00 ZNF208 7757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 22156903 22156903 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_007153 exon4 c.G933A p.K311K GTAGGGCTTCTCT 115 58 0.50 95 0 0 1 0 0.00 CCNE1 898 broad.mit.edu 37 19 30308069 30308069 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CCNE1 NM_001238 exon5 c.C206T p.A69V TCTGTGCAGACCC 112 3 0.03 123 1 0.0081300813 49 44 0 0.00 ACTN4 81 mdanderson.org 37 19 39191305 39191305 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004924 exon2 c.G228T p.E76D TGATGAGGACTTC 52 3 0.06 49 0 0 183 0 0.00 CAPN12 147968 broad.mit.edu 37 19 39228218 39228219 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CAPN12 NM_144691 exon9 c.1026_1027insC p.P342fs CACCTCCGGGCTC 161 6 0.04 131 0 0 43 4 0 0.00 SUPT5H 6829 broad.mit.edu 37 19 39965024 39965024 + Silent SNP G G A rs376597898 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SUPT5H NM_003169 exon26 c.G2802A p.P934P TACACCGTCGCCC 244 6 0.02 213 0 0 119 491 0 0.00 PLA2G4C 8605 broad.mit.edu 37 19 48607859 48607859 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLA2G4C NM_001159322 exon4 c.C273A p.V91V TCCAGAGACCCCT 131 5 0.04 121 1 0.0082644628 76 1 0 0.00 NTF4 4909 broad.mit.edu 37 19 49564741 49564741 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NTF4 NM_006179 exon2 c.G514A p.A172T GCTTGGCCTTGCA 238 7 0.03 228 0 0 10 1 0 0.00 TSKS 60385 broad.mit.edu 37 19 50251405 50251405 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TSKS NM_021733 exon4 c.C516T p.S172S ATTCTCGCTCAGC 162 4 0.02 162 0 0 97 1 0 0.00 ZNF845 91664 hgsc.bcm.edu 37 19 53855197 53855197 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 ZNF845,bladder,carcinoma,+1,3 ZNF845 NM_138374 exon4 c.G1269A p.M423I TCAGATGTCATCC 119 5 0.04 145 1 0.0068965517 1 3 3 0 0.00 ZNF813 126017 broad.mit.edu 37 19 53995075 53995076 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF813 NM_001004301 exon4 c.1589_1590insG p.K530fs GTGGCAAGGTTTT 221 4 0.02 219 0 0 81 4 0 0.00 ZNF814 730051 broad.mit.edu 37 19 58385702 58385704 + In_Frame_Del DEL ATA ATA - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 ATA ATA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF814 NM_001144989 exon3 c.1054_1056del p.352_352del ACATTCATAATGT 379 7 0.02 372 0 0 93 13 0 0.00 C2orf50 130813 broad.mit.edu 37 2 11284192 11284193 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . C2orf50 NM_182500 exon3 c.444_445insG p.E148fs CACAGAAGGGGCC 329 5 0.02 278 0 0 12 15 0 0.00 GEN1 348654 broad.mit.edu 37 2 17954019 17954019 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GEN1 NM_182625 exon8 c.G921T p.R307S TGATAGGCAACTC 259 5 0.02 179 0 0 79 1 0 0.00 PUM2 23369 broad.mit.edu 37 2 20453737 20453737 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PUM2 NM_015317 exon19 c.C2909A p.A970D CTCTCAGCACGGG 106 3 0.03 82 0 0 91 59 0 0.00 APOB 338 broad.mit.edu 37 2 21232321 21232321 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . APOB NM_000384 exon26 c.C7419A p.T2473T GGCCTTGGTTTCC 206 6 0.03 164 1 0.006097561 761 0 0 NCOA1 8648 broad.mit.edu 37 2 24952606 24952606 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NCOA1 NM_147223 exon15 c.G3123A p.R1041R GCCCAGGCAAACT 208 4 0.02 173 3 0.0173410405 210 8 0 0.00 IFT172 26160 broad.mit.edu 37 2 27688723 27688723 + Silent SNP G G T rs373009930 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IFT172 NM_015662 exon17 c.C1719A p.G573G TCCCCCGCCCCGC 297 3 0.01 180 0 0 119 4 0 0.00 SLC4A1AP 22950 broad.mit.edu 37 2 27908039 27908039 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC4A1AP NM_018158 exon10 c.G2011T p.D671Y CTGGAGGATGGAA 269 4 0.01 227 0 0 63 126 0 0.00 CAPN14 440854 broad.mit.edu 37 2 31420142 31420142 + Missense_Mutation SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CAPN14 NM_001145122 exon8 c.T848C p.V283A CATTCCACCTTTC 275 3 0.01 230 1 0.0043478261 36 0 0 THUMPD2 80745 broad.mit.edu 37 2 39998751 39998752 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . THUMPD2 NM_025264 exon2 c.156_157insT p.F52fs GGTGGTGAAAAAA 466 0 0.00 377 0 0 35 0 0 THADA 63892 broad.mit.edu 37 2 43797579 43797579 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . THADA NM_001083953 exon14 c.C2135A p.P712Q TTCTCTGGTTCAC 301 6 0.02 223 4 0.0179372197 131 4 0 0.00 EPAS1 2034 broad.mit.edu 37 2 46596999 46596999 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . EPAS1 NM_001430 exon7 c.G813T p.E271D TGAGGAGCTGCTT 264 4 0.02 165 0 0 83 9 0 0.00 NRXN1 9378 broad.mit.edu 37 2 50724692 50724692 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NRXN1 NM_001135659 exon15 c.C2778T p.G926G TATGTCGCCATTT 157 5 0.03 152 0 0 1118 0 0 VRK2 7444 broad.mit.edu 37 2 58386754 58386754 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . VRK2 NM_001130480 exon13 c.G1453T p.A485S ACAAACGCAGATG 156 4 0.03 140 0 0 46 194 0 0.00 VPS54 51542 broad.mit.edu 37 2 64193029 64193029 + Frame_Shift_Del DEL A A - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . VPS54 NM_016516 exon6 c.564delT p.F188fs AGTATTAAAATGA 639 5 0.01 412 0 0 57 7 0 0.00 VAX2 25806 broad.mit.edu 37 2 71148283 71148283 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . VAX2 NM_012476 exon2 c.G303T p.R101R GGACCGGCCCAAG 308 3 0.01 220 1 0.0045454545 27 0 0 ATP6V1B1 525 broad.mit.edu 37 2 71190761 71190761 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ATP6V1B1 NM_001692 exon11 c.G1120T p.D374Y TACGTGGACAGAC 333 6 0.02 221 2 0.0090497738 66 0 0 ALMS1 7840 broad.mit.edu 37 2 73676896 73676896 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ALMS1 NM_015120 exon8 c.G3239T p.G1080V TCCCTGGACCAGC 253 4 0.02 176 0 0 384 2 0 0.00 WDR54 84058 broad.mit.edu 37 2 74649360 74649360 + Missense_Mutation SNP C C T rs138696895 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . WDR54 NM_032118 exon2 c.C80T p.P27L AGCTGCCGGCTCG 199 5 0.03 131 0 0 17 96 1 0.01 GCFC2 6936 broad.mit.edu;mdanderson.org 37 2 75937788 75937788 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001201335 exon1 c.G194A p.R65H CGGCCACGAGGGC 13 2 0.15 12 0 0 6 0 0.00 USP39 10713 broad.mit.edu 37 2 85843583 85843583 + Nonsense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . USP39 NM_001256725 exon1 c.C265T p.R89X GAGGTGCGAGGTG 229 3 0.01 172 0 0 33 58 0 0.00 . 0 broad.mit.edu 37 2 89278486 89278486 + RNA SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . GAGAAGCTGAGCT 451 10 0.02 357 2 0.0056022409 1 0 0.00 MRPS5 64969 broad.mit.edu 37 2 95780894 95780894 + Missense_Mutation SNP C C T rs201430985 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MRPS5 NM_031902 exon3 c.G194A p.R65H AGTGCACGGCTCA 251 5 0.02 196 1 0.0051020408 52 257 0 0.00 FAHD2A 51011 broad.mit.edu 37 2 96078220 96078220 + Nonsense_Mutation SNP G G T rs376463411 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FAHD2A NM_016044 exon6 c.G724T p.E242X AATGGGGAAGTGG 212 4 0.02 184 0 0 25 223 0 0.00 SNRNP200 23020 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 96940775 96940775 + Missense_Mutation SNP G G C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SNRNP200 NM_014014 exon45 c.C6386G p.A2129G GTCTCAGCTTCTT 146 46 0.32 108 1 0.0092592593 195 1175 41 0.03 RPL31 6160 broad.mit.edu 37 2 101619185 101619185 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RPL31 NM_001098577 exon2 c.G22T p.G8C AAGGGTGGCGAGA 272 7 0.03 187 0 0 12 19778 12 0.00 FBLN7 129804 broad.mit.edu 37 2 112922735 112922735 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FBLN7 NM_153214 exon3 c.G393T p.Q131H GGAGCAGCCCCAC 260 4 0.02 191 0 0 49 3 0 0.00 PSD4 23550 broad.mit.edu 37 2 113953723 113953723 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PSD4 NM_012455 exon12 c.2226-1G>T . TGTTCAGGGATGA 315 3 0.01 200 0 0 74 0 0 POTEE 445582 broad.mit.edu 37 2 131981234 131981234 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001083538 exon2 c.G587A p.R196Q ACAGACGATGTCA 591 10 0.02 409 2 0.0048899756 0 0 ANKRD30BL 554226 broad.mit.edu 37 2 132905710 132905710 + Silent SNP A A G rs375594327 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ANKRD30BL . . . . CTATTCATCAGGT 777 4 0.01 790 1 0.0012658228 36 0 0 UBXN4 23190 broad.mit.edu 37 2 136537757 136537757 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UBXN4 NM_014607 exon12 c.G1190T p.G397V AGGCAGGAAGACC 174 3 0.02 170 1 0.0058823529 54 56 0 0.00 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141294207 141294207 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 LRP1B,NS,carcinoma,+2,1 LRP1B NM_018557 exon46 c.A7585G p.T2529A CACAGGTGAGCTG 281 105 0.37 288 0 0 2 1 0 0 PKP4 8502 mdanderson.org 37 2 159499039 159499039 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001005476 exon11 c.G1737T p.L579L CCTTCTGGACCAC 113 5 0.04 103 0 0 13 0 0.00 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 170096096 170096096 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 LRP2,colon,carcinoma,-1,1 LRP2 NM_004525 exon26 c.G4235A p.R1412Q GAGCACCGGAAAG 312 31 0.10 279 0 0 -1 1 0 0 TTN 7273 broad.mit.edu 37 2 179430994 179430994 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TTN NM_001267550 exon326 c.C79865A p.P26622H ATCTCAGGCGTTG 183 4 0.02 132 0 0 18412 0 0 CCDC141 285025 broad.mit.edu 37 2 179843270 179843270 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CCDC141 NM_173648 exon3 c.C358A p.L120I TTTCAAGCATGGA 148 4 0.03 136 0 0 362 3 0 0.00 FSIP2 401024 broad.mit.edu 37 2 186672907 186672907 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FSIP2 NM_173651 exon17 c.G19141A p.A6381T GTGAATGCAATTT 458 9 0.02 406 2 0.0049261084 251 0 0 COQ10B 80219 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 198334798 198334798 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . COQ10B NM_025147 exon4 c.C452A p.S151Y AGGCATCTTGTAC 211 11 0.05 186 1 0.0053763441 18 33 1 0.03 SGOL2 151246 broad.mit.edu 37 2 201399866 201399867 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SGOL2 NM_152524 exon3 c.281_282insA p.T94fs AGAACACATTTCT 440 8 0.02 365 0 0 126 3 0 0.00 NBEAL1 65065 broad.mit.edu 37 2 204039941 204039942 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NBEAL1 NM_001114132 exon41 c.6308_6309insG p.A2103fs ATTCTGCGGGGGT 417 0 0.00 404 0 0 266 1 0 0.00 DYTN 391475 broad.mit.edu 37 2 207527786 207527786 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DYTN NM_001093730 exon11 c.C1474A p.P492T TTTTGGGGATGTC 278 4 0.01 233 1 0.0042918455 168 0 0 KANSL1L 151050 broad.mit.edu 37 2 210888778 210888779 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_152519 exon14 c.2712_2713insT p.L904fs TTGATTTAAAGAA 233 4 0.02 210 0 0 14 0 0.00 FN1 2335 broad.mit.edu 37 2 216235100 216235100 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FN1 NM_212482 exon41 c.C6770A p.A2257D TAGGTGGCACCTC 152 5 0.03 129 1 0.007751938 521 1275 0 0.00 STK36 27148 broad.mit.edu 37 2 219540116 219540116 + Silent SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . STK36 NM_015690 exon5 c.C354A p.S118S GCATTCCCACCGC 280 2 0.01 244 0 0 111 7 0 0.00 MFF 56947 broad.mit.edu 37 2 228220439 228220439 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MFF NM_020194 exon10 c.G859T p.D287Y TCAGATGACCTGA 190 3 0.02 194 0 0 48 447 1 0.00 HJURP 55355 broad.mit.edu 37 2 234750714 234750714 + Nonsense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HJURP NM_018410 exon8 c.G712T p.E238X TGGTCTCTTGTAG 121 4 0.03 152 0 0 72 98 0 0.00 IQCA1 79781 broad.mit.edu 37 2 237327829 237327829 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IQCA1 NM_001270585 exon8 c.C1118T p.A373V TTTTTGGCTTTCT 736 6 0.01 669 1 0.0014947683 170 2 0 0.00 COL6A3 1293 broad.mit.edu 37 2 238271979 238271979 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . COL6A3 NM_004369 exon14 c.C5980A p.L1994M ACTCCAGATGCAT 287 4 0.01 268 3 0.0111940299 608 32 0 0.00 COL6A3 1293 broad.mit.edu 37 2 238296450 238296450 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 COL6A3_ENST00000392004,NS,carcinoma,+1,2 COL6A3 NM_004369 exon4 c.C1087A p.R363S CGTAGCGAATCTC 111 3 0.03 87 1 0.0114942529 608 2 2 0 0.00 PER2 8864 mdanderson.org 37 2 239161833 239161833 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_022817 exon19 c.C2831T p.A944V TGTGAGGCAGAGG 39 3 0.08 44 0 0 2 0 0.00 TRMT6 51605 broad.mit.edu 37 20 5924639 5924639 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TRMT6 NM_015939 exon5 c.G497A p.R166H AGAATACGGGTGG 288 5 0.02 245 3 0.012244898 28 30 0 0.00 KIF3B 9371 broad.mit.edu 37 20 30898575 30898575 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KIF3B NM_004798 exon2 c.G995T p.R332L CTCTGCGATATGC 163 3 0.02 186 1 0.0053763441 75 4 0 0.00 TTI1 9675 broad.mit.edu 37 20 36642033 36642033 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 TTI1,NS,carcinoma,-2,1 TTI1 NM_014657 exon3 c.C186A p.T62T ACCTGGGGTCTTC 175 4 0.02 175 0 0 104 1 5 0 0.00 PTPRT 11122 broad.mit.edu 37 20 40827906 40827906 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PTPRT NM_133170 exon17 c.C2522A p.S841Y GAACTAGAAGAGA 208 3 0.01 226 1 0.0044247788 372 0 0 DBNDD2 55861 broad.mit.edu 37 20 44037587 44037587 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DBNDD2 NM_001048226 exon2 c.C592A p.L198I ATGCCCCTCTGCT 104 4 0.04 106 0 0 30 2 0 0.00 PLTP 5360 broad.mit.edu 37 20 44539808 44539808 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLTP NM_182676 exon3 c.C183A p.F61L GTAGTAGAAGTGG 185 4 0.02 161 1 0.0062111801 49 101 0 0.00 PCIF1 63935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 44574893 44574893 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_022104 exon14 c.G1483T p.V495L CTGCCTGTGCATG 95 17 0.18 63 0 0 100 28 0.28 MC3R 4159 broad.mit.edu 37 20 54824540 54824540 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MC3R NM_019888 exon1 c.C641T p.A214V TCTTTGCGCGGCT 186 4 0.02 149 0 0 83 0 0 . 0 broad.mit.edu 37 21 10862831 10862831 + RNA SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TGCAAGGCTTCTG 251 4 0.02 220 0 0 0 0 ANKRD20A11P 391267 hgsc.bcm.edu 37 21 15343568 15343568 + RNA SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . AATTATAGCAAAT 92 6 0.07 55 0 0 0 0 BTG3 10950 broad.mit.edu 37 21 18966553 18966553 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BTG3 NM_001130914 exon6 c.C749A p.P250H GGAGGAGGATAGT 305 4 0.01 204 0 0 27 320 0 0.00 LTN1 26046 broad.mit.edu 37 21 30357129 30357129 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LTN1 NM_015565 exon4 c.G598A p.A200T ACTGAGCCATTAG 271 5 0.02 128 0 0 141 0 0 BACH1 571 broad.mit.edu 37 21 30693795 30693795 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BACH1 NM_206866 exon2 c.G194T p.G65V TCGTAGGCCAGGC 316 4 0.01 152 0 0 66 1 0 0.00 GRIK1 2897 broad.mit.edu 37 21 31045454 31045454 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GRIK1 NM_175611 exon4 c.C575A p.A192D GAGGGAGCTTTGA 282 5 0.02 158 0 0 293 0 0 TIAM1 7074 broad.mit.edu 37 21 32624145 32624145 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 TIAM1_ENST00000286827,rectum,carcinoma,0,2 TIAM1 NM_003253 exon6 c.G1324A p.V442I TCTTGACGGCCAG 300 3 0.01 157 0 0 522 2 3 0 0.00 URB1 9875 broad.mit.edu 37 21 33717054 33717054 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . URB1 NM_014825 exon24 c.C4082T p.A1361V GAGTCGGCCACGA 75 3 0.04 55 0 0 176 14 0 0.00 BRWD1 54014 broad.mit.edu 37 21 40581968 40581968 + Missense_Mutation SNP G G T rs147607337 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BRWD1 NM_018963 exon36 c.C4150A p.L1384M ATATCAGCCGGAT 247 4 0.02 122 0 0 325 10 0 0.00 DSCAM 1826 broad.mit.edu 37 21 41648167 41648167 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DSCAM NM_001271534 exon11 c.C2213A p.A738D TTTAGGGCAATTG 261 4 0.02 167 0 0 347 2 0 0.00 UMODL1 89766 broad.mit.edu 37 21 43547248 43547248 + Silent SNP G G T rs373998313 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UMODL1 NM_173568 exon18 c.G3810T p.G1270G AGTGGGGCTCTAC 225 3 0.01 132 0 0 186 83 0 0.00 RRP1 8568 broad.mit.edu 37 21 45217893 45217893 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RRP1 NM_003683 exon8 c.G723T p.E241D GGATGAGGAGGTG 227 3 0.01 152 0 0 23 553 0 0.00 DNMT3L 29947 broad.mit.edu 37 21 45679568 45679568 + Nonsense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNMT3L NM_013369 exon4 c.C178T p.Q60X GAACCTGGAGACT 299 6 0.02 195 0 0 33 1380 1 0.00 IL17RA 23765 mdanderson.org 37 22 17589847 17589847 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_014339 exon13 c.C1738T p.R580C CAGGTCCGCTGTC 19 2 0.11 24 0 0 15 0 0.00 PRODH 5625 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 18900987 18900987 + Missense_Mutation SNP G G C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PRODH NM_016335 exon14 c.C1579G p.L527V CTAGCAGCTGTCC 190 90 0.47 230 2 0.0086956522 42 434 210 0.48 CLTCL1 8218 broad.mit.edu 37 22 19263276 19263276 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CLTCL1 NM_001835 exon2 c.C120A p.I40I CTCTCGGATACAT 143 4 0.03 141 0 0 115 0 0 SCARF2 91179 mdanderson.org 37 22 20780271 20780271 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SCARF2,middle_lobe,carcinoma,-1,1 SCARF2 NM_153334 exon11 c.G2007T p.K669N GGACACCTTAGGC 16 3 0.19 31 0 0 -1 1 8 0 0.00 CABIN1 23523 broad.mit.edu 37 22 24480695 24480695 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CABIN1 NM_001199281 exon21 c.G3074T p.S1025I CCCTTAGCCTGGA 154 4 0.03 167 1 0.005988024 153 22 0 0.00 ZNRF3 84133 mdanderson.org 37 22 29446834 29446834 + Missense_Mutation SNP C C T rs375016509 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001206998 exon8 c.C2665T p.R889W CTACTGCGGCCTG 26 2 0.08 23 0 0 62 0 0.00 SLC5A4 6527 broad.mit.edu 37 22 32620367 32620367 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC5A4 NM_014227 exon13 c.C1552A p.P518T TCTTGGGACAGTT 175 4 0.02 174 0 0 82 0 0 LGALS2 3957 broad.mit.edu 37 22 37966694 37966694 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LGALS2 NM_006498 exon3 c.C138A p.F46L AGGGTTGAAATGC 169 5 0.03 150 1 0.0066666667 16 24 0 0.00 NOL12 79159 broad.mit.edu 37 22 38087248 38087248 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 NOL12,NS,carcinoma,-1,2 NOL12 NM_024313 exon6 c.C547T p.R183W CCCCGACGGGCCC 320 4 0.01 324 0 0 22 2 142 0 0.00 TAB1 10454 mdanderson.org 37 22 39826224 39826224 + Silent SNP G G A rs375542675 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_006116 exon11 c.G1512A p.P504P AGCACCGTAGGGC 31 3 0.10 33 0 0 28 0 0.00 . 0 broad.mit.edu 37 22 41585696 41585697 + RNA INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . CTGGCCATTTTTT 36 7 0.19 38 0 0 0 0 SREBF2 6721 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 22 42289198 42289198 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004599 exon12 c.C2286T p.C762C GCTCTGCCACCCC 94 5 0.05 72 0 0 95 0 0.00 CYP2D6 1565 broad.mit.edu 37 22 42522918 42522918 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CYP2D6 NM_000106 exon8 c.C1250A p.P417H TGTTCGGGGTGGA 372 5 0.01 346 0 0 104 4 0 0.00 SETMAR 6419 broad.mit.edu 37 3 4355265 4355266 + Frame_Shift_Ins INS - - G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SETMAR NM_001276325 exon2 c.840_841insG p.H280fs AGATCATGGGAAA 375 5 0.01 226 0 0 30 11 0 0.00 PPARG 5468 broad.mit.edu 37 3 12447553 12447554 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PPARG NM_015869 exon5 c.792_793insT p.I264fs GGCGATCTTGACA 241 4 0.02 187 0 0 49 5 0 0.00 IQSEC1 9922 broad.mit.edu 37 3 12977109 12977109 + Silent SNP G G T rs148022111 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IQSEC1 NM_014869 exon3 c.C1449A p.I483I GCAGTTGATGGTA 152 5 0.03 125 2 0.016 88 5 0 0.00 ANKRD28 23243 broad.mit.edu 37 3 15731642 15731642 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ANKRD28 NM_015199 exon18 c.C1757A p.P586H TCTAGGGGTGTTC 284 7 0.02 207 0 0 121 21 0 0.00 ARPP21 10777 broad.mit.edu 37 3 35834022 35834022 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ARPP21 NM_001267619 exon18 c.G2184T p.Q728H TTATCAGGTGCTC 326 3 0.01 224 0 0 153 0 0 DCLK3 85443 broad.mit.edu 37 3 36779862 36779863 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 DCLK3,NS,carcinoma,+2,1 DCLK3 NM_033403 exon2 c.289_290insG p.R97fs TCCCCCTCCCCCA 287 6 0.02 173 0 0 95 1 4 0 0.00 ZNF35 7584 broad.mit.edu 37 3 44694153 44694153 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF35 NM_003420 exon3 c.G297T p.K99N GGCCAAGAGTGAG 159 3 0.02 120 0 0 34 12 0 0.00 KIF15 56992 broad.mit.edu 37 3 44828007 44828007 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KIF15 NM_020242 exon7 c.G580T p.G194X AAGAAGGGAGTCT 229 4 0.02 164 0 0 103 10 0 0.00 ALS2CL 259173 broad.mit.edu 37 3 46713682 46713682 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ALS2CL NM_001190707 exon23 c.C2482A p.L828M TGACCAGGGAGTA 286 4 0.01 158 0 0 78 18 0 0.00 CCDC12 151903 broad.mit.edu 37 3 47018230 47018230 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CCDC12 NM_144716 exon2 c.A32T p.E11V TTGCCCGCGTACG 151 4 0.03 88 0 0 9 49 1 0.02 NBEAL2 23218 hgsc.bcm.edu;broad.mit.edu 37 3 47045654 47045656 + In_Frame_Del DEL TCT TCT - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 TCT TCT Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NBEAL2 NM_015175 exon37 c.5968_5970del p.1990_1990del TTGAGCTCTTCTT 163 13 0.08 113 0 0 267 35 0 0.00 NCKIPSD 51517 broad.mit.edu 37 3 48717114 48717114 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NCKIPSD NM_016453 exon8 c.C1383A p.L461L GCACTTGAGGAGC 207 6 0.03 155 1 0.0064516129 52 71 1 0.01 USP19 10869 broad.mit.edu 37 3 49146487 49146487 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . USP19 NM_001199160 exon27 c.C4164A p.G1388G GAGGCAGCCCTCA 328 5 0.02 215 2 0.0093023256 158 18 0 0.00 LAMB2 3913 broad.mit.edu 37 3 49162818 49162818 + Missense_Mutation SNP C C T rs146326783 bycluster;byfrequency TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LAMB2 NM_002292 exon19 c.G2588A p.R863H TGGCAGCGGTCAC 313 3 0.01 161 0 0 156 15 0 0.00 BSN 8927 broad.mit.edu 37 3 49690876 49690876 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BSN NM_003458 exon5 c.C3887T p.A1296V AGAGTGCATACAT 275 9 0.03 191 5 0.0261780105 272 0 0 SEMA3F 6405 broad.mit.edu 37 3 50211240 50211240 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SEMA3F NM_004186 exon3 c.G127T p.G43C GCCACAGGCACCG 191 5 0.03 109 0 0 62 2 0 0.00 STAB1 23166 broad.mit.edu 37 3 52539151 52539151 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 STAB1,NS,malignant_melanoma,0,1 STAB1 NM_015136 exon13 c.G1510T p.D504Y CCTGGGGATCCCA 209 5 0.02 175 0 0 178 1 0 0 IL17RB 55540 broad.mit.edu 37 3 53889325 53889325 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IL17RB NM_018725 exon6 c.C486T p.C162C AGGCTGCCTAGAC 322 4 0.01 226 0 0 27 2 0 0.00 SLMAP 7871 broad.mit.edu 37 3 57857388 57857388 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLMAP NM_007159 exon11 c.G1161T p.G387G TGGCGGGGACTGC 263 3 0.01 198 1 0.0050505051 46 0 0 DNASE1L3 1776 broad.mit.edu 37 3 58183671 58183671 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNASE1L3 NM_004944 exon6 c.G581A p.C194Y TAGCTGCAGCCGG 204 4 0.02 125 1 0.008 36 0 0 KBTBD8 84541 broad.mit.edu 37 3 67054481 67054481 + Missense_Mutation SNP G G C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KBTBD8 NM_032505 exon3 c.G1090C p.D364H ATGTATGATCATT 201 5 0.02 159 0 0 101 4 0 0.00 LOC440970 0 broad.mit.edu 37 3 84741480 84741480 + RNA DEL A A - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TCCCAGAAAAAAA 6 3 0.50 4 0 0 0 0 OR5H1 26341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 97852456 97852456 + Missense_Mutation SNP A A C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001005338 exon1 c.A915C p.L305F AATGTTAAAAAAA 133 21 0.16 90 0 0 0 0 CMSS1 84319 broad.mit.edu 37 3 99881276 99881276 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_032359 exon4 c.G355T p.D119Y CTGCCAGGTATAG 229 3 0.01 143 0 0 392 0 0.00 TFG 10342 broad.mit.edu 37 3 100455557 100455558 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TFG NM_001007565 exon6 c.718_719insA p.E240fs CAGATTGAAGGTA 292 7 0.02 170 0 0 42 197 0 0.00 NFKBIZ 64332 broad.mit.edu 37 3 101574033 101574033 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NFKBIZ NM_031419 exon7 c.G1571T p.G524V AGAAGGGCCACTC 271 3 0.01 184 1 0.0054347826 55 0 0 ATP6V1A 523 broad.mit.edu 37 3 113513972 113513972 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ATP6V1A NM_001690 exon10 c.G1147T p.A383S CGTCTGGCCTCGT 168 6 0.04 129 1 0.007751938 71 11 0 0.00 ZNF80 7634 broad.mit.edu 37 3 113956064 113956064 + Translation_Start_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF80 . . . . GTTACAGCTCTTA 72 3 0.04 43 0 0 75 0 0 STXBP5L 9515 broad.mit.edu 37 3 120764286 120764286 + Missense_Mutation SNP C C T rs375292809 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 STXBP5L,colon,carcinoma,0,2 STXBP5L NM_014980 exon5 c.C374T p.A125V AGGGTGCCTTGGT 282 4 0.01 202 0 0 159 2 0 0 POLQ 10721 broad.mit.edu 37 3 121207058 121207058 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . POLQ NM_199420 exon16 c.G4720T p.D1574Y ATATATCCACATT 137 5 0.04 90 0 0 273 3 0 0.00 CASR 846 broad.mit.edu 37 3 121980486 121980486 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CASR NM_001178065 exon4 c.G604T p.E202X ATCATCGAGTATT 249 5 0.02 169 2 0.0118343195 190 0 0 KPNA1 3836 broad.mit.edu 37 3 122168466 122168466 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KPNA1 NM_002264 exon9 c.C872T p.A291V ATGACCGCTTGAA 495 4 0.01 371 2 0.0053908356 42 49 0 0.00 ADCY5 111 broad.mit.edu 37 3 123010141 123010141 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADCY5 NM_183357 exon18 c.C3146A p.A1049D TGAGCGGCCACGT 355 8 0.02 216 1 0.0046296296 169 28 0 0.00 ITGB5 3693 broad.mit.edu 37 3 124592308 124592308 + Silent SNP G G T rs200795031 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ITGB5 NM_002213 exon2 c.C141A p.A47A GCACCAGGCACAT 264 3 0.01 160 0 0 66 85 0 0.00 RAB7A 7879 broad.mit.edu 37 3 128516833 128516833 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RAB7A NM_004637 exon3 c.G101T p.S34I AATTCAGCAATCA 302 5 0.02 242 0 0 17 769 0 0.00 TMCC1 23023 broad.mit.edu 37 3 129370502 129370502 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TMCC1 NM_001017395 exon6 c.C1784A p.A595D ATGACAGCCAGGA 191 3 0.02 156 0 0 105 22 0 0.00 COL6A5 256076 broad.mit.edu 37 3 130107651 130107651 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . COL6A5 NM_153264 exon6 c.G2090T p.R697I TAGATAGAATGTC 225 3 0.01 158 2 0.0126582278 205 0 0 DNAJC13 23317 broad.mit.edu 37 3 132202314 132202314 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DNAJC13 NM_015268 exon28 c.G3075T p.Q1025H ACCCCAGCTTAAG 284 4 0.01 196 0 0 253 5 0 0.00 TOPBP1 11073 broad.mit.edu 37 3 133327786 133327786 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TOPBP1 NM_007027 exon26 c.G4194T p.K1398N AATAACCTTCCAC 593 5 0.01 392 0 0 218 171 0 0.00 ESYT3 83850 broad.mit.edu 37 3 138191495 138191495 + Missense_Mutation SNP G G T rs372734965 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ESYT3 NM_031913 exon18 c.G2031T p.E677D CTGTGAGCCCATC 207 3 0.01 118 0 0 64 15 0 0.00 CEP70 80321 broad.mit.edu 37 3 138219304 138219305 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CEP70 NM_024491 exon15 c.1474_1475insA p.V492fs TATAAACTTCATT 519 7 0.01 349 0 0 51 102 0 0.00 RASA2 5922 broad.mit.edu 37 3 141235273 141235273 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RASA2 NM_006506 exon3 c.G355T p.G119X CGTATAGGTATGT 274 6 0.02 181 1 0.0055248619 169 0 0 PLS1 5357 broad.mit.edu 37 3 142403123 142403123 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLS1 NM_001172312 exon8 c.G774T p.E258D AGGTGAGGAACTA 304 4 0.01 215 0 0 71 12 0 0.00 U2SURP 23350 broad.mit.edu 37 3 142733171 142733172 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . U2SURP NM_001080415 exon4 c.241_242insT p.L81fs AACAAACTTAAAG 604 6 0.01 451 0 0 66 52 0 0.00 PLOD2 5352 broad.mit.edu 37 3 145788627 145788627 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLOD2 NM_182943 exon20 c.C2154A p.C718X AATAGAGCAATTG 645 6 0.01 483 0 0 81 178 0 0.00 PLSCR4 57088 broad.mit.edu 37 3 145914479 145914480 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PLSCR4 NM_001128304 exon9 c.726_727insA p.N242fs CATCACATTTTCT 514 4 0.01 349 0 0 44 3 0 0.00 PFN2 5217 broad.mit.edu 37 3 149686177 149686178 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PFN2 NM_002628 exon2 c.293_294insA p.T98fs TTGTATGTTGGCT 328 5 0.02 235 0 0 23 450 0 0.00 P2RY1 5028 broad.mit.edu 37 3 152554612 152554612 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . P2RY1 NM_002563 exon1 c.G1041T p.E347D AAGTGAGGCAAAT 161 3 0.02 125 2 0.016 49 4 0 0.00 TRIM59 286827 broad.mit.edu 37 3 160156583 160156583 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TRIM59 NM_173084 exon3 c.C389A p.P130H TCTATAGGATGAC 175 4 0.02 115 0 0 42 12 0 0.00 PRKCI 5584 broad.mit.edu 37 3 170009712 170009713 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PRKCI NM_002740 exon13 c.1274_1275insA p.L425fs AAATTTTAAGAGG 547 4 0.01 388 0 0 82 27 0 0.00 ABCC5 10057 broad.mit.edu 37 3 183670921 183670921 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ABCC5 NM_005688 exon18 c.G2620A p.A874T TGAAGGCGGTGCT 232 5 0.02 153 0 0 142 22 0 0.00 VPS8 23355 broad.mit.edu 37 3 184580796 184580796 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . VPS8 NM_001009921 exon15 c.G1336T p.V446F CAGCTGGTCTACA 166 5 0.03 104 0 0 109 1 0 0.00 HRG 3273 broad.mit.edu 37 3 186394998 186394998 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HRG NM_000412 exon7 c.G904T p.D302Y CCTCCAGATGAAA 547 4 0.01 287 1 0.0034843206 81 1 0 0.00 MUC4 4585 broad.mit.edu 37 3 195508959 195508959 + Silent SNP A A T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 MUC4_ENST00000463781,NS,carcinoma,0,1 MUC4 NM_018406 exon2 c.T9492A p.G3164G GGCCTGACCTGTG 82 4 0.05 66 1 0.0151515152 1505 1 10 0 0.00 PDE6B 5158 broad.mit.edu 37 4 619638 619638 + Missense_Mutation SNP G G A rs376238566 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PDE6B NM_001145291 exon1 c.G223A p.V75M GAGCGCGTGGTCT 129 3 0.02 122 0 0 80 1 0 0.00 PDE6B 5158 broad.mit.edu;bcgsc.ca 37 4 656329 656329 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PDE6B NM_001145291 exon14 c.T1754C p.L585P CGGACCTGGAGGC 116 8 0.07 110 0 0 80 10 0 0.00 FGFR3 2261 mdanderson.org 37 4 1804666 1804666 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001163213 exon8 c.C956A p.A319D TGGAGGCCGACGT 56 3 0.05 60 0 0 15 0 0.00 ADD1 118 broad.mit.edu 37 4 2896372 2896372 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 ADD1,NS,carcinoma,-2,1 ADD1 NM_014190 exon6 c.G655T p.A219S AATCAGGCCGGCT 286 4 0.01 335 0 0 56 1 31 0 0.00 SEL1L3 23231 broad.mit.edu 37 4 25769163 25769163 + Silent SNP G G T rs182680181 bycluster;by1000genomes;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SEL1L3,NS,carcinoma,0,4 SEL1L3 NM_015187 exon19 c.C2829A p.I943I AGCATCGATTTGA 331 7 0.02 403 5 0.0124069479 62 4 19 0 0.00 N4BP2 55728 broad.mit.edu 37 4 40123092 40123092 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . N4BP2 NM_018177 exon9 c.G3361T p.A1121S ATTTGGGCCACAA 257 3 0.01 278 0 0 166 2 0 0.00 GABRA4 2557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 46994860 46994860 + Missense_Mutation SNP G G A rs201606797 by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_000809 exon2 c.C190T p.R64C CAGGACGCAGCCT 186 72 0.39 184 0 0 0 0 0 EPHA5 2044 broad.mit.edu 37 4 66217148 66217148 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 EPHA5,NS,other,0,1 EPHA5 NM_004439 exon14 c.C2467A p.R823R GTACCCGGGAAAG 172 4 0.02 170 0 0 315 1 0 0 RUFY3 22902 broad.mit.edu 37 4 71659525 71659525 + Missense_Mutation SNP G G A rs376846064 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RUFY3 NM_001037442 exon13 c.G1361A p.R454H GAAGCCGCCAATC 314 7 0.02 304 1 0.0032894737 61 24 0 0.00 SHROOM3 57619 broad.mit.edu 37 4 77677789 77677789 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SHROOM3 NM_020859 exon8 c.G4897T p.A1633S CAGCCAGCACCCA 247 3 0.01 235 0 0 134 14 0 0.00 AGPAT9 84803 broad.mit.edu 37 4 84518594 84518594 + Frame_Shift_Del DEL A A - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 AGPAT9,NS,carcinoma,-1,1 AGPAT9 NM_001256421 exon10 c.922delA p.N308fs TGCATCAACAATA 767 10 0.01 787 0 0 41 1 7 0 0.00 SNCA 0 broad.mit.edu 37 4 90743449 90743449 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SNCA NM_000345 exon4 c.C254T p.A85V CTCCCTGCTCCCT 146 4 0.03 186 0 0 17 40 0 0.00 CYP2U1 113612 broad.mit.edu 37 4 108868567 108868567 + Missense_Mutation SNP G G T rs138968113 bycluster;byfrequency;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CYP2U1 NM_183075 exon3 c.G1162T p.A388S ATTGGCGCCAACC 247 3 0.01 240 1 0.0041666667 20 11 0 0.00 KIAA1109 84162 broad.mit.edu 37 4 123249484 123249484 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KIAA1109 NM_015312 exon64 c.G11221T p.E3741X GAGAGGGAAAGGT 112 4 0.04 118 1 0.0084745763 424 0 0 ADAD1 132612 broad.mit.edu 37 4 123304995 123304995 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADAD1 NM_139243 exon5 c.G403T p.D135Y GTGGTGGATGGTA 288 2 0.01 263 6 0.0228136882 94 0 0 SLC25A31 83447 broad.mit.edu 37 4 128665844 128665844 + Missense_Mutation SNP C C T rs369621147 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC25A31 NM_031291 exon2 c.C250T p.R84C TTTTGGCGTGGCA 183 4 0.02 198 3 0.0151515152 42 0 0 UCP1 7350 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 141483480 141483480 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UCP1 NM_021833 exon5 c.G676A p.A226T CTGTTGCGCAAAA 130 28 0.22 122 1 0.0081967213 33 3 1 0.33 PPID 5481 broad.mit.edu 37 4 159630976 159630976 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PPID NM_005038 exon10 c.C1025A p.A342D TGGATAGCTGTAA 78 3 0.04 79 0 0 22 230 0 0.00 RAPGEF2 9693 broad.mit.edu 37 4 160273959 160273959 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RAPGEF2 NM_014247 exon21 c.G3505T p.D1169Y CTGCACGATGAGA 205 6 0.03 212 2 0.0094339623 171 10 0 0.00 DDX60 55601 broad.mit.edu 37 4 169208307 169208307 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DDX60 NM_017631 exon10 c.C1231A p.L411I TCCAGAGATATTC 261 4 0.02 280 0 0 304 1 0 0.00 TRIP13 9319 mdanderson.org 37 5 893199 893199 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001166260 exon1 c.G86T p.G29V AGCGCGGCAGCAG 28 3 0.11 26 0 0 21 0 0.00 PDZD2 23037 broad.mit.edu 37 5 32098547 32098547 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PDZD2 NM_178140 exon22 c.C8025T p.N2675N AGTCAACGGCGCC 119 4 0.03 118 0 0 306 6 0 0.00 NPR3 0 broad.mit.edu 37 5 32789680 32789680 + Frame_Shift_Del DEL C C - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NPR3 . . . . TCCTTTCTCTTAA 287 7 0.02 298 0 0 65 0 0 ADAMTS12 81792 broad.mit.edu 37 5 33614434 33614434 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADAMTS12 NM_030955 exon16 c.C2436A p.I812I TTTCTGGATTGTG 91 4 0.04 93 0 0 464 1 0 0.00 OSMR 9180 broad.mit.edu 37 5 38933393 38933393 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OSMR NM_003999 exon18 c.G2787T p.K929N AGACAAGGACAGT 235 3 0.01 270 0 0 133 2 0 0.00 RICTOR 253260 broad.mit.edu;bcgsc.ca 37 5 38958837 38958837 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RICTOR NM_152756 exon23 c.C2275A p.L759I CATGTAGCTGGGT 176 6 0.03 198 1 0.0050505051 182 1 0 0.00 WDR41 55255 broad.mit.edu 37 5 76736715 76736715 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . WDR41 NM_018268 exon9 c.C805A p.L269M TGTCCAGTTGTGG 98 4 0.04 90 1 0.0111111111 29 33 1 0.03 MSH3 4437 broad.mit.edu 37 5 80160704 80160704 + Missense_Mutation SNP G G T rs375336744 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MSH3 NM_002439 exon22 c.G3073T p.V1025L CACCAGGTGGGGA 140 5 0.04 159 0 0 129 24 0 0.00 GPR98 84059 broad.mit.edu 37 5 89918485 89918485 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 GPR98,NS,carcinoma,0,1 GPR98 NM_032119 exon5 c.G525T p.K175N GGAAAAGGGAACC 336 4 0.01 284 0 0 605 1 0 0 SLCO4C1 353189 broad.mit.edu 37 5 101631695 101631695 + Missense_Mutation SNP C C G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLCO4C1 NM_180991 exon1 c.G272C p.R91T AAGTTCCTCCAGC 212 8 0.04 198 0 0 113 1 0 0.00 . 0 bcgsc.ca 37 5 110284092 110284092 + RNA SNP A A G rs367881369 bycluster TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TTCCTCATGGTTG 74 9 0.12 58 0 0 3 3 1.00 . 0 bcgsc.ca 37 5 110284097 110284097 + RNA SNP T T C rs370268370 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . CATGGTTGGCTAA 76 8 0.11 61 0 0 3 2 0.67 SRP19 7905 ucsc.edu 37 5 112228215 112228215 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SRP19 . . . . GTTTAACGGACGA 331 2 0.01 336 0 0 12 35 31 0.89 rescued with RNA-seq SLC22A4 6583 broad.mit.edu 37 5 131676374 131676374 + Nonsense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC22A4 NM_003059 exon9 c.C1561T p.Q521X TTAGAGCAGATGC 142 3 0.02 107 0 0 45 0 0 EGR1 1958 broad.mit.edu 37 5 137802588 137802588 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 EGR1,colon,carcinoma,0,1 EGR1 NM_001964 exon2 c.G450T p.W150C CTTGTGGCCCGAG 139 6 0.04 105 0 0 52 1 15 0 0.00 NDST1 3340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 149932837 149932837 + Nonsense_Mutation SNP T T G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001543 exon15 c.T2592G p.Y864X GCTGTATAAGATG 94 49 0.52 78 0 0 52 29 0.56 GRIA1 0 broad.mit.edu 37 5 153026671 153026671 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GRIA1 NM_001258021 exon3 c.G434T p.S145I TCATCAGCATCAT 147 3 0.02 150 0 0 321 9 0 0.00 GABRB2 0 broad.mit.edu 37 5 160721152 160721152 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 GABRB2_ENST00000274547,NS,carcinoma,-1,2 GABRB2 NM_021911 exon11 c.G1475A p.R492H AATATGCGGGACC 172 4 0.02 228 1 0.0043859649 161 2 0 0 WWC1 23286 broad.mit.edu 37 5 167719173 167719173 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . WWC1 NM_015238 exon1 c.C16T p.L6L CCGGAGCTGCCCC 150 3 0.02 126 1 0.0079365079 98 1 0 0.00 STK10 6793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 171520918 171520918 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_005990 exon9 c.G1052T p.S351I TTGAGGCTTGGCG 164 78 0.48 141 0 0 34 19 0.56 STC2 8614 broad.mit.edu 37 5 172750382 172750382 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . STC2 NM_003714 exon3 c.C346A p.H116N ACCTGTGCCGCAG 150 5 0.03 183 2 0.0109289617 59 200 4 0.02 CDHR2 54825 broad.mit.edu 37 5 176002409 176002409 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CDHR2 NM_017675 exon9 c.G750T p.V250V CTCTGTGGCTGAG 125 4 0.03 175 1 0.0057142857 152 0 0 FGFR4 2264 broad.mit.edu 37 5 176519440 176519440 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FGFR4 NM_022963 exon6 c.G846T p.Q282H CATCCAGTGGCTG 254 4 0.02 215 2 0.0093023256 174 58 0 0.00 EXOC2 55770 broad.mit.edu 37 6 629857 629857 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . EXOC2 NM_018303 exon4 c.C400A p.P134T CAAGCGGGTTAGC 197 4 0.02 132 0 0 81 7 0 0.00 BPHL 670 mdanderson.org 37 6 3119019 3119019 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004332 exon1 c.G45T p.L15L GCGGCTGCTTCTC 49 3 0.06 23 1 0.0434782609 25 0 0.00 F13A1 2162 broad.mit.edu 37 6 6305608 6305608 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . F13A1 NM_000129 exon3 c.C295A p.L99I TGAAGAGATCCCT 236 3 0.01 146 1 0.0068493151 135 1 0 0.00 CMAHP 0 broad.mit.edu 37 6 25089567 25089568 + RNA INS - - A rs3838674 bycluster;byfrequency;by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CMAHP . . . . AGTCTGCCCCAGC 11 6 0.55 4 0 0 6 0 0 TRIM38 10475 broad.mit.edu 37 6 25967154 25967154 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TRIM38 NM_006355 exon3 c.G404T p.G135V GCCAGGGCTACAA 143 5 0.03 114 1 0.0087719298 50 8 0 0.00 HIST1H1C 3006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26056602 26056602 + Missense_Mutation SNP G G C rs200705328 bycluster;by1000genomes TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_005319 exon1 c.C55G p.P19A TTACAGGGGCCTT 282 100 0.35 170 0 0 0 57 20 0.35 OR2B6 26212 broad.mit.edu 37 6 27925454 27925454 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . OR2B6 NM_012367 exon1 c.G436T p.A146S TTGGCAGCTGCAT 138 4 0.03 77 0 0 48 0 0 NEU1 4758 broad.mit.edu 37 6 31830433 31830433 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NEU1 NM_000434 exon1 c.G121A p.A41T AGGCTGCCAGAGA 242 6 0.02 178 2 0.0112359551 21 96 0 0.00 NOTCH4 4855 broad.mit.edu 37 6 32163486 32163486 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NOTCH4 NM_004557 exon30 c.C5740A p.R1914S ACCTACGGCCGCG 111 3 0.03 66 0 0 201 9 0 0.00 STK38 11329 broad.mit.edu 37 6 36463608 36463608 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . STK38 NM_007271 exon14 c.C1351A p.L451M CAGTCAGGCCCTC 179 4 0.02 110 0 0 54 21 0 0.00 FGD2 221472 broad.mit.edu 37 6 36995746 36995746 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FGD2 NM_173558 exon16 c.T1775C p.I592T CCTCCATCCCCCT 198 13 0.07 143 10 0.0699300699 65 2 0 0.00 DNAH8 1769 broad.mit.edu 37 6 38942237 38942237 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 DNAH8_ENST00000359357,bladder,carcinoma,0,2 DNAH8 NM_001206927 exon85 c.G12766T p.D4256Y CTTCTGGACATCA 177 7 0.04 103 1 0.0097087379 1239 2 0 0 TAF8 129685 broad.mit.edu 37 6 42025143 42025143 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TAF8 NM_138572 exon5 c.G381T p.Q127H CAATCAGCCAGTG 187 3 0.02 115 0 0 25 48 0 0.00 XPO5 57510 broad.mit.edu 37 6 43519113 43519113 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . XPO5 NM_020750 exon15 c.C1650A p.S550S GACGCAGGACAGG 325 3 0.01 224 0 0 79 63 0 0.00 TCTE1 202500 broad.mit.edu 37 6 44248061 44248061 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . TCTE1 NM_182539 exon5 c.C1363A p.L455M CTGACAGGCGCAA 270 3 0.01 178 0 0 77 1 0 0.00 GPR115 221393 broad.mit.edu 37 6 47678470 47678470 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GPR115 NM_153838 exon4 c.149-1G>T . TTTATAGAGAAAT 241 4 0.02 153 1 0.0065359477 140 0 0 COL21A1 0 broad.mit.edu 37 6 55989038 55989038 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . COL21A1 NM_030820 exon15 c.C1703A p.A568D CTCACAGCAGGTC 737 4 0.01 556 0 0 201 5 0 0.00 EYS 346007 broad.mit.edu 37 6 66053998 66053998 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 EYS_ENST00000370621,NS,carcinoma,0,2 EYS NM_001142801 exon10 c.C1532T p.A511V TAGGTTGCATCTT 236 4 0.02 295 1 0.0033898305 527 2 0 0 DDX43 55510 mdanderson.org 37 6 74124407 74124407 + Silent SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_018665 exon14 c.A1743G p.A581A AAGAGCAGGGTAA 58 3 0.05 63 0 0 18 0 0.00 IBTK 25998 broad.mit.edu 37 6 82921250 82921251 + Frame_Shift_Ins INS - - C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . IBTK NM_015525 exon14 c.2331_2332insG p.G777fs TTCCTTTCCATCC 462 7 0.02 528 0 0 128 3 0 0.00 ANKRD6 22881 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 90276740 90276740 + Silent SNP C C G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ANKRD6 NM_001242809 exon2 c.C45G p.L15L CCTTCTCGTAGCT 521 47 0.09 310 4 0.0129032258 51 1 0 0.00 AIM1 202 broad.mit.edu 37 6 107009345 107009345 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . AIM1 NM_001624 exon18 c.G4884T p.W1628C GATTTGGATCTAT 153 4 0.03 179 3 0.0167597765 161 12 0 0.00 GPR6 2830 mdanderson.org 37 6 110300658 110300658 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_005284 exon1 c.G343A p.A115T AGCCTGGCCACCG 48 3 0.06 44 0 0 2 0 0.00 KIAA1919 91749 mdanderson.org 37 6 111580906 111580906 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_153369 exon1 c.G3T p.M1I CTTGATGCTGTGT 62 5 0.08 44 1 0.0227272727 1 0 0.00 SLC35F1 222553 broad.mit.edu 37 6 118596709 118596709 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SLC35F1,rectum,carcinoma,+1,2 SLC35F1 NM_001029858 exon5 c.G725T p.R242L TCATCCGAACTCT 233 6 0.03 238 0 0 65 2 2 0 0.00 ALDH8A1 64577 broad.mit.edu 37 6 135239750 135239750 + Missense_Mutation SNP C C T rs148331222 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ALDH8A1 NM_022568 exon7 c.G1267A p.V423M ACCACACGGTAGC 227 6 0.03 249 0 0 68 0 0 FUCA2 2519 broad.mit.edu 37 6 143825112 143825112 + Silent SNP G G A rs377166178 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FUCA2 NM_032020 exon3 c.C690T p.D230D TCCTCCGTCACCA 154 4 0.03 141 0 0 28 146 0 0.00 SYTL3 94120 broad.mit.edu 37 6 159086520 159086520 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SYTL3 NM_001242384 exon6 c.G204T p.Q68H CCAGCAGGTGCTG 135 3 0.02 169 0 0 49 0 0 SLC22A2 6582 broad.mit.edu 37 6 160679540 160679540 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC22A2 NM_003058 exon1 c.G250T p.A84S GGGAGGCTTCGCC 97 5 0.05 116 1 0.0086206897 78 0 0 PMS2 5395 broad.mit.edu 37 7 6026590 6026590 + Silent SNP G G T rs376046767 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PMS2 NM_000535 exon11 c.C1806A p.A602A CTGAGAGGCTGAC 221 3 0.01 197 0 0 88 13 0 0.00 KLHL7 55975 broad.mit.edu 37 7 23213659 23213659 + Silent SNP C C T rs147111813 byfrequency TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 KLHL7_ENST00000339077,NS,carcinoma,0,2 KLHL7 NM_001031710 exon11 c.C1503T p.Y501Y ATATTACGATATT 281 5 0.02 221 0 0 102 2 21 0 0.00 FAM221A 340277 broad.mit.edu 37 7 23731023 23731023 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_199136 exon4 c.G445T p.G149X TGTTCAGGATTCC 277 3 0.01 185 1 0.0054054054 44 0 0.00 BBS9 27241 broad.mit.edu 37 7 33313525 33313525 + Nonsense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BBS9 NM_014451 exon9 c.C973T p.Q325X GCCACCCAACTTC 171 5 0.03 135 0 0 194 9 0 0.00 ELMO1 9844 broad.mit.edu 37 7 37264492 37264492 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ELMO1 NM_014800 exon9 c.C693A p.H231Q TTGCAGGTGTGGA 102 3 0.03 98 1 0.0102040816 141 12 0 0.00 STARD3NL 0 broad.mit.edu 37 7 38254698 38254698 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . STARD3NL NM_032016 exon4 c.G373T p.A125S TGGTGGGCAATAG 105 4 0.04 88 0 0 35 92 0 0.00 POU6F2 11281 broad.mit.edu 37 7 39500265 39500265 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 POU6F2,NS,carcinoma,0,3 POU6F2 NM_007252 exon10 c.G1522T p.A508S GGACAGGCTCTCA 121 8 0.07 73 0 0 117 3 0 0 STYXL1 51657 broad.mit.edu 37 7 75651171 75651171 + Missense_Mutation SNP T T A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . STYXL1 NM_016086 exon4 c.A305T p.K102I CCACCTTTGCCAT 75 3 0.04 75 0 0 35 72 0 0.00 ABCB4 5244 broad.mit.edu 37 7 87079377 87079377 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ABCB4 NM_018850 exon8 c.C740A p.A247D TAAGCAGCTAGTT 231 3 0.01 264 0 0 177 1 0 0.00 ADAM22 53616 broad.mit.edu 37 7 87737492 87737492 + Splice_Site SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADAM22 NM_021722 exon5 c.G392T p.G131V TTCAGGGAGGAGA 109 4 0.04 86 0 0 280 0 0 PCOLCE 5118 broad.mit.edu 37 7 100205135 100205135 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PCOLCE NM_002593 exon7 c.C1001T p.A334V TCTGTGCCAGCAG 153 6 0.04 134 0 0 37 129 0 0.00 SLC12A9 56996 mdanderson.org 37 7 100458783 100458783 + Silent SNP G G A rs376976514 TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_020246 exon10 c.G1242A p.L414L GAAGCTGAACACA 53 3 0.06 70 0 0 40 0 0.00 CUX1 1523 broad.mit.edu;mdanderson.org 37 7 101758516 101758516 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CUX1 NM_181500 exon8 c.G670T p.D224Y TTATTTGACCTGA 123 5 0.04 134 2 0.0149253731 253 14 0 0.00 LRRC17 10234 broad.mit.edu 37 7 102579955 102579955 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . LRRC17 NM_005824 exon3 c.G851T p.R284L AACTTCGACCCAA 152 6 0.04 121 0 0 45 7 0 0.00 IFRD1 3475 broad.mit.edu 37 7 112096081 112096081 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 IFRD1,NS,carcinoma,+1,1 IFRD1 NM_001007245 exon4 c.G224T p.G75V AGGAAGGAACTCA 83 4 0.05 99 0 0 46 1 70 0 0.00 CFTR 1080 broad.mit.edu 37 7 117188705 117188705 + Missense_Mutation SNP A A T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CFTR NM_000492 exon10 c.A1220T p.E407V TTGGGGAATTATT 206 6 0.03 191 1 0.0052356021 171 0 0 CTTNBP2 83992 broad.mit.edu 37 7 117431590 117431590 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CTTNBP2 NM_033427 exon4 c.C1660A p.Q554K GAGTTTGGGAGAG 235 4 0.02 247 2 0.008097166 200 0 0 SND1 27044 mdanderson.org 37 7 127714713 127714713 + Nonsense_Mutation SNP G G T rs148173300 bycluster;by1000genomes;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_014390 exon17 c.G1939T p.E647X TCTGCCGAGGAGG 50 3 0.06 47 0 0 324 1 0.00 CCDC136 64753 broad.mit.edu 37 7 128446881 128446881 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CCDC136 NM_022742 exon9 c.C1388T p.T463M GGGATACGGTGGC 196 4 0.02 174 0 0 170 7 0 0.00 EPHB6 2051 mdanderson.org 37 7 142565385 142565385 + Silent SNP G G T rs8177153 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004445 exon12 c.G1770T p.P590P GCTTCCGGAAAGA 47 3 0.06 54 0 0 5 0 0.00 EPHA1 2041 broad.mit.edu 37 7 143094683 143094683 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . EPHA1 NM_005232 exon9 c.G1683A p.L561L AAGCAGCAAGGCT 231 3 0.01 238 0 0 193 35 0 0.00 ZNF862 643641 broad.mit.edu 37 7 149543304 149543304 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF862 NM_001099220 exon3 c.C201T p.G67G GCTTGGCAGCGTC 240 4 0.02 281 0 0 97 0 0 ATP6V0E2 155066 hgsc.bcm.edu 37 7 149571176 149571176 + Missense_Mutation SNP C C T rs11538585 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001100592 exon1 c.C169T p.L57F TTCGCCCTCCCGG 97 4 0.04 98 0 0 42 0 0.00 MLL3 58508 broad.mit.edu 37 7 151873946 151873946 + Missense_Mutation SNP A A T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MLL3 NM_170606 exon38 c.T8592A p.D2864E TTCTCCATCATTT 97 3 0.03 130 1 0.0076923077 1564 1 0 0.00 RBM33 155435 broad.mit.edu 37 7 155534588 155534588 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 RBM33_ENST00000401878,colon,carcinoma,0,2 RBM33 NM_053043 exon13 c.C2125T p.R709C AATTTGCGTGAAT 192 6 0.03 205 1 0.0048780488 157 2 7 0 0.00 REEP4 80346 broad.mit.edu 37 8 21996273 21996273 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . REEP4 NM_025232 exon7 c.C587A p.T196N TCCTCGGTGTCGC 101 4 0.04 66 0 0 13 210 0 0.00 STC1 6781 broad.mit.edu 37 8 23702384 23702384 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 STC1,NS,carcinoma,0,2 STC1 NM_003155 exon4 c.C643T p.R215C TGGTGCGTCTCCT 248 3 0.01 220 1 0.0045454545 49 2 19 0 0.00 PPP2R2A 5520 broad.mit.edu 37 8 26221301 26221301 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PPP2R2A_ENST00000380737,NS,malignant_melanoma,+1,1 PPP2R2A NM_001177591 exon8 c.G897T p.S299S TATTTCGGATGTA 181 4 0.02 122 1 0.0081967213 44 1 136 0 0.00 ADRA1A 148 broad.mit.edu 37 8 26721626 26721626 + Silent SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ADRA1A NM_033303 exon1 c.T861C p.P287P GAAAAAAGGCAGC 89 3 0.03 81 0 0 337 2 0 0.00 UBXN8 7993 broad.mit.edu 37 8 30608867 30608867 + RNA DEL A A - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . UBXN8 . . . . TCTCTTAAAAAAA 96 7 0.07 67 0 0 13 0 0 ANK1 286 broad.mit.edu 37 8 41580653 41580653 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ANK1 NM_001142446 exon9 c.C998A p.A333D GTTTTGGCTTGGA 199 3 0.02 163 2 0.0122699387 497 2 0 0.00 HOOK3 84376 broad.mit.edu 37 8 42829324 42829324 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HOOK3 NM_032410 exon13 c.G1308T p.Q436H AGGGCAGCTCACA 288 4 0.01 240 0 0 71 7 0 0.00 PRKDC 5591 broad.mit.edu 37 8 48825096 48825096 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PRKDC,NS,carcinoma,-2,2 PRKDC . . . . AACCATGCTATGT 172 7 0.04 140 4 0.0285714286 394 2 2 0 0.00 PRKDC 5591 broad.mit.edu 37 8 48839866 48839866 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 PRKDC,NS,carcinoma,-1,2 PRKDC . . . . ATTCAGGCCTACT 289 6 0.02 218 0 0 394 2 1 0 0.00 SDCBP 6386 broad.mit.edu 37 8 59490720 59490720 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 SDCBP,NS,carcinoma,0,2 SDCBP NM_001007067 exon6 c.G531T p.V177V CAAGGTGCTCAAA 261 8 0.03 168 3 0.0178571429 20 2 237 1 0.00 C8orf44 56260 broad.mit.edu 37 8 67592032 67592032 + Missense_Mutation SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . C8orf44 NM_019607 exon3 c.C323T p.A108V CTTTGGCCATCTT 193 3 0.02 140 2 0.0142857143 18 6 0 0.00 CSPP1 79848 broad.mit.edu 37 8 68030987 68030987 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CSPP1 NM_024790 exon13 c.G1613T p.G538V GTTCAGGAATGAT 1042 10 0.01 755 1 0.0013245033 129 12 0 0.00 FSBP 100861412 broad.mit.edu 37 8 95444395 95444395 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FSBP NM_001256141 exon2 c.C864A p.R288R CCGTAAGCGAATT 235 4 0.02 157 0 0 1 16 0 0.00 BAALC 79870 broad.mit.edu 37 8 104153274 104153274 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BAALC NM_001024372 exon1 c.G149T p.G50V CGGGCGGCCTGCA 140 8 0.06 101 2 0.0198019802 15 0 0 DCAF13 25879 broad.mit.edu 37 8 104438341 104438341 + Nonsense_Mutation SNP G G T rs374721908 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DCAF13 NM_015420 exon4 c.G892T p.E298X GGAGACGAGGAAG 245 4 0.02 181 0 0 66 202 1 0.00 NUDCD1 84955 broad.mit.edu 37 8 110308689 110308689 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NUDCD1 NM_032869 exon3 c.C383A p.T128N GACAAGGTAACCC 226 4 0.02 187 0 0 58 45 0 0.00 PKHD1L1 93035 broad.mit.edu 37 8 110457854 110457854 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PKHD1L1 NM_177531 exon38 c.G5756T p.R1919I TTCTCAGAGGAAT 288 3 0.01 206 0 0 522 0 0 PTP4A3 11156 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 142437898 142437898 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PTP4A3 NM_032611 exon4 c.C378T p.Y126Y GAAGTACGAGGAC 61 5 0.08 35 0 0 19 142 53 0.37 NAPRT1 93100 broad.mit.edu 37 8 144658885 144658885 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NAPRT1 NM_145201 exon6 c.C812A p.A271D ACAAAGGCTGCCC 113 3 0.03 110 1 0.0090909091 47 108 0 0.00 DCAF10 79269 broad.mit.edu 37 9 37861267 37861267 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DCAF10 NM_024345 exon7 c.G1442T p.S481I GCTTCAGCCCCGA 110 3 0.03 128 0 0 31 38 0 0.00 MURC 347273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 103340815 103340815 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 MURC,caecum,carcinoma,0,1 MURC NM_001018116 exon1 c.C390T p.F130F CAAATTCCGCGTG 234 25 0.11 210 1 0.0047619048 0 1 0 0 RNF20 56254 broad.mit.edu 37 9 104307104 104307104 + Missense_Mutation SNP G G T rs372537878 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 RNF20,NS,carcinoma,+2,1 RNF20 NM_019592 exon6 c.G684T p.E228D ACAGGAGAATATG 66 3 0.05 78 0 0 110 1 19 0 0.00 BSPRY 54836 broad.mit.edu;mdanderson.org 37 9 116116549 116116549 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . BSPRY NM_017688 exon2 c.G231T p.L77L GAGGCTGCAGTTA 119 5 0.04 127 0 0 21 6 0 0.00 CDK5RAP2 55755 broad.mit.edu 37 9 123292347 123292347 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CDK5RAP2 NM_018249 exon8 c.C734A p.S245Y ATCTGAGATTTCT 171 6 0.04 153 1 0.0065359477 157 5 0 0.00 C9orf117 286207 broad.mit.edu 37 9 130471761 130471761 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . C9orf117 NM_001012502 exon2 c.G222T p.E74D GTTTGAGCAGCTG 166 5 0.03 177 1 0.0056497175 21 3 0 0.00 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 9 139399283 139399283 + Nonsense_Mutation SNP G G T rs375196212 alternate_allele TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_017617 exon26 c.C4860A p.Y1620X GCGGCCGTAGTAG 71 4 0.06 56 0 0 13 0 0.00 TUBB4B 10383 broad.mit.edu 37 9 140137426 140137426 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 TUBB2C,bladder,carcinoma,0,1 . NM_006088 exon4 c.G756T p.K252N GCGGAAGCTGGCT 57 6 0.11 70 1 0.0142857143 1 1870 86 0.05 TUBBP5 0 broad.mit.edu 37 9 141069468 141069468 + RNA SNP C C G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . GCTTCTCCTGCCG 39 5 0.13 48 1 0.0208333333 0 0 FRMPD4 9758 broad.mit.edu 37 X 12736057 12736057 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FRMPD4 NM_014728 exon16 c.G3112A p.A1038T GGGAAGGCACCCC 259 7 0.03 131 2 0.0152671756 214 2 0 0.00 GEMIN8 54960 broad.mit.edu 37 X 14027165 14027165 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GEMIN8 NM_017856 exon5 c.C596A p.A199D ATCTCGGCCTGGC 323 3 0.01 163 0 0 19 125 0 0.00 CA5BP1 0 broad.mit.edu 37 X 15711088 15711088 + RNA DEL G G - novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TCAGCTGCACTTA 1243 10 0.01 698 0 0 30 0 0.00 REPS2 9185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 17047745 17047745 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_004726 exon5 c.G770A p.R257Q TTATCCGGGTAAG 174 18 0.10 98 0 0 5 0 0.00 NHS 4810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 17750309 17750309 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_198270 exon8 c.G4618A p.D1540N AGCACCGATGATG 420 169 0.40 248 0 0 11 2 0.18 KLHL15 80311 broad.mit.edu 37 X 24024352 24024352 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KLHL15 NM_030624 exon3 c.G459T p.K153N GTCTAACTTCTCC 193 4 0.02 85 1 0.0117647059 50 4 0 0.00 ARX 170302 broad.mit.edu 37 X 25033725 25033725 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ARX NM_139058 exon1 c.C130A p.L44M CTCCCAGCAACCG 204 4 0.02 103 0 0 19 1 0 0.00 MAGEB3 4114 broad.mit.edu 37 X 30254694 30254694 + Missense_Mutation SNP C C T rs145982241 bycluster;byfrequency TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MAGEB3 NM_002365 exon5 c.C653T p.A218V ACTGTGCCACTGA 182 5 0.03 104 0 0 54 0 0 DMD 1756 broad.mit.edu 37 X 31196891 31196891 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DMD NM_004006 exon70 c.C10118A p.A3373D ACCTTGGCAAAGT 165 4 0.02 105 0 0 2127 10 0 0.00 FAM47C 442444 broad.mit.edu 37 X 37028069 37028069 + Missense_Mutation SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . FAM47C NM_001013736 exon1 c.T1586C p.I529T CCAAGATTCTGGT 114 6 0.05 63 1 0.0158730159 267 0 0 ZNF41 7592 broad.mit.edu 37 X 47315340 47315340 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZNF41 NM_007130 exon4 c.C275T p.A92V TGTGGGGCTTCCC 233 4 0.02 115 1 0.0086956522 71 1 0 0.00 KDM5C 8242 broad.mit.edu 37 X 53227713 53227713 + Silent SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . KDM5C NM_004187 exon17 c.C2475T p.C825C GGACACGCAAGCC 356 6 0.02 158 0 0 385 81 0 0.00 HUWE1 10075 broad.mit.edu 37 X 53572039 53572039 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . HUWE1 NM_031407 exon71 c.C10999A p.P3667T CCTCAGGCAGGCC 175 3 0.02 88 0 0 724 158 0 0.00 WNK3 65267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54285766 54285766 + Silent SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001002838 exon11 c.A2043G p.V681V TTGGGATACAGGC 115 36 0.31 61 0 0 1 0 0.00 GNL3L 54552 broad.mit.edu 37 X 54584983 54584983 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GNL3L NM_001184819 exon15 c.G1561T p.D521Y TCAGTGGACCGCC 162 4 0.02 90 2 0.0222222222 73 27 0 0.00 SPIN4 139886 broad.mit.edu 37 X 62570276 62570276 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SPIN4 NM_001012968 exon1 c.C423A p.V141V CGCCAGGACCATA 249 4 0.02 153 0 0 29 5 0 0.00 AMER1 139285 broad.mit.edu 37 X 63412939 63412939 + Silent SNP T T C novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_152424 exon2 c.A228G p.G76G GCTCCGTCCCCCT 270 7 0.03 101 1 0.0099009901 0 0 PJA1 64219 broad.mit.edu 37 X 68382256 68382257 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PJA1 NM_145119 exon2 c.826_827insT p.D276_T277delinsX CAGTATCAAAAAA 181 7 0.04 94 0 0 106 73 0 0.00 P2RY4 5030 broad.mit.edu 37 X 69478692 69478692 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . P2RY4 NM_002565 exon1 c.C783A p.F261L GATGTGGAAAGGC 186 3 0.02 81 0 0 39 0 0 SLC7A3 84889 broad.mit.edu 37 X 70146767 70146767 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLC7A3 NM_032803 exon9 c.C1411A p.P471T AGAGTGGAGTGGG 261 5 0.02 121 0 0 76 454 0 0.00 ZMYM3 9203 broad.mit.edu 37 X 70470506 70470506 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ZMYM3 NM_005096 exon5 c.G849A p.R283R CCGGGGCCGGAAT 237 3 0.01 131 0 0 137 22 0 0.00 RPS6KA6 27330 broad.mit.edu 37 X 83360833 83360833 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . RPS6KA6 NM_014496 exon16 c.C1417T p.R473C CATAGCGCATCAA 530 5 0.01 327 0 0 116 0 0 SATL1 340562 broad.mit.edu 37 X 84362715 84362715 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SATL1 NM_001012980 exon1 c.C1260A p.G420G GCTCAGGCCTGTT 284 4 0.01 154 0 0 70 0 0 SATL1 340562 broad.mit.edu 37 X 84363309 84363309 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SATL1 NM_001012980 exon1 c.C666A p.V222V GCTGGGGACTTGC 174 3 0.02 113 0 0 70 0 0 NXF5 55998 broad.mit.edu 37 X 101096670 101096671 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NXF5 NM_032946 exon5 c.216_217insA p.K72fs ATAAATCTTATAA 659 5 0.01 337 0 0 65 0 0 SLC25A53 401612 broad.mit.edu 37 X 103349555 103349555 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . NM_001012755 exon2 c.C386A p.A129D GCCACGGCCTCCA 123 3 0.02 68 1 0.0147058824 0 0 NXT2 55916 broad.mit.edu 37 X 108784834 108784834 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . NXT2 NM_018698 exon4 c.G398A p.C133Y TAGATTGCCAACC 265 4 0.02 127 0 0 16 15 0 0.00 ALG13 79868 broad.mit.edu 37 X 110970932 110970933 + Frame_Shift_Ins INS - - T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . ALG13 NM_001099922 exon18 c.2181_2182insT p.G727fs CAGGGGCTTGGAA 369 7 0.02 217 0 0 230 9 0 0.00 DCAF12L1 139170 broad.mit.edu 37 X 125686305 125686305 + Missense_Mutation SNP G G A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DCAF12L1 NM_178470 exon1 c.C287T p.T96M TTGACCGTGCCCA 292 3 0.01 153 0 0 135 1 0 0.00 GPR112 139378 broad.mit.edu 37 X 135405334 135405334 + Silent SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . GPR112 NM_153834 exon5 c.G468T p.G156G TCATGGGACTCTG 222 4 0.02 128 0 0 459 0 0 MIR320D2 0 broad.mit.edu 37 X 140008380 140008380 + RNA SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . . . . . . TGGGAAGAGAAGG 781 7 0.01 495 1 0.002020202 0 0 SLITRK4 139065 broad.mit.edu 37 X 142717464 142717464 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . SLITRK4 NM_001184750 exon2 c.C1461A p.S487R AGGCAGGCTCTTT 258 3 0.01 109 0 0 162 5 0 0.00 MAGEA11 4110 broad.mit.edu 37 X 148797652 148797653 + Frame_Shift_Ins INS - - A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . MAGEA11 NM_005366 exon5 c.506_507insA p.P169fs AGTCACCAAGTCC 376 7 0.02 194 0 0 86 2 0 0.00 CNGA2 1260 broad.mit.edu 37 X 150908187 150908187 + Silent SNP C C T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . CNGA2 NM_005140 exon4 c.C357T p.G119G GGATGGCGAGGAC 148 4 0.03 90 0 0 136 0 0 PNMA5 114824 broad.mit.edu 37 X 152159584 152159584 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . PNMA5 NM_001103150 exon2 c.C559A p.P187T ATATGGGCATTAT 148 3 0.02 91 0 0 63 0 0 DUSP9 1852 broad.mit.edu 37 X 152914704 152914704 + Missense_Mutation SNP C C A novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DUSP9 NM_001395 exon3 c.C391A p.Q131K AGATTCCAGGCCG 64 4 0.06 27 0 0 41 14 0 0.00 G6PD 2539 broad.mit.edu 37 X 153760882 153760882 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . G6PD NM_000402 exon10 c.C1277A p.P426H TCGTTGGGCTGCA 230 6 0.03 96 0 0 73 209 2 0.01 USP9Y 8287 broad.mit.edu 37 Y 14902338 14902338 + Splice_Site SNP A A G novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . USP9Y NM_004654 exon25 c.3562-2A>G . TTTTTCAGATTAA 202 4 0.02 236 0 0 49 0 0 DDX3Y 8653 broad.mit.edu 37 Y 15026886 15026886 + Missense_Mutation SNP G G T novel TCGA-VF-A8A8-01A-11D-A435-10 TCGA-VF-A8A8-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d 28cabae0-04dd-4dda-b578-da9b77c757d6 . DDX3Y NM_004660 exon9 c.G850T p.A284S GAGGAAGCCAGAA 100 3 0.03 153 0 0 13 16 0 0.00