Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CDA 978 mdanderson.org 37 1 20931514 20931514 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001785 exon2 c.G248T p.R83M ATTTCAGGGCAAT 55 3 0.05 52 0 0 45 0 0.00 EIF4G3 8672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 21205927 21205927 + Silent SNP A A G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001198801 exon18 c.T2451C p.T817T GTCAACAGTAAGT 106 33 0.31 110 0 0 61 25 0.41 CSMD2 114784 ucsc.edu;bcgsc.ca 37 1 34192157 34192157 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . CSMD2 NM_052896 exon16 c.C2378A p.T793N TCGAAGGTGATTT 32 4 0.13 47 0 0 946 6 0 0.00 LRRN2 10446 hgsc.bcm.edu;bcgsc.ca 37 1 204587180 204587181 + Frame_Shift_Ins INS - - A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . LRRN2 NM_006338 exon3 c.1941_1942insT p.A647fs GTGGGCCGCTAGC 59 10 0.17 66 0 0 81 3 0 0.00 USH2A 7399 mdanderson.org 37 1 215814071 215814071 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_206933 exon68 c.C14797A p.Q4933K GGTACTGAGGCAC 49 3 0.06 65 0 0 0 0 TTC13 79573 mdanderson.org 37 1 231075185 231075185 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_024525 exon8 c.C847A p.P283T CTATAGGCTGGTT 37 3 0.08 37 0 0 6 0 0.00 MAP1LC3C 440738 mdanderson.org 37 1 242162272 242162272 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001004343 exon1 c.C39A p.F13L CTGCTTGAAGGGT 39 3 0.08 63 0 0 0 0 FLJ31813 0 broad.mit.edu 37 10 51826259 51826259 + RNA DEL A A - novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . AAAAGCAAAAAAA 8 5 0.63 8 0 0 0 0 PCBD1 5092 mdanderson.org 37 10 72643793 72643793 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_000281 exon4 c.C229A p.L77M TGCTCAGCGTGAT 47 3 0.06 50 0 0 203 0 0.00 EBF3 253738 mdanderson.org 37 10 131761739 131761739 + Missense_Mutation SNP G G T rs143335830 alternate_allele TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001005463 exon2 c.C183A p.N61K CCGGAGGTTGGAA 41 3 0.07 51 0 0 0 0 TCERG1L 256536 mdanderson.org 37 10 133058643 133058643 + Silent SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_174937 exon4 c.C735T p.A245A GGCAGCGGCGGCG 41 3 0.07 19 0 0 88 0 0.00 FAM111B 374393 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 58892877 58892877 + Missense_Mutation SNP A A G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_198947 exon4 c.A1307G p.K436R ATAAAAAGGACTT 71 5 0.07 84 0 0 3 0 0.00 NUDT22 84304 mdanderson.org 37 11 63995082 63995082 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001128612 exon3 c.G523T p.G175W CTCGCTGGGCAGC 48 3 0.06 81 0 0 20 0 0.00 DPP3 10072 mdanderson.org 37 11 66272124 66272124 + Silent SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_005700 exon17 c.G1920T p.L640L GGCCCTGTACGAG 39 3 0.08 51 0 0 81 0 0.00 CCDC87 55231 mdanderson.org 37 11 66360429 66360429 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_018219 exon1 c.C58A p.R20S GCGGACGCAGCAG 45 3 0.07 42 0 0 26 0 0.00 CCDC89 220388 mdanderson.org 37 11 85397036 85397036 + Missense_Mutation SNP C C A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 CCDC89,NS,carcinoma,-1,1 CCDC89 NM_152723 exon1 c.G138T p.R46S GGCTTCCCTCAGA 50 3 0.06 125 0 0 -1 1 0 0 BCO2 83875 mdanderson.org 37 11 112071399 112071399 + Missense_Mutation SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_031938 exon7 c.C929T p.A310V AAATTGCCACTTC 41 3 0.07 77 1 0.012987013 2 0 0.00 APOA5 116519 mdanderson.org 37 11 116661290 116661290 + Missense_Mutation SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_052968 exon4 c.G655A p.A219T GGCTGGCGGGGGC 10 2 0.20 26 0 0 0 0 STT3A 3703 mdanderson.org 37 11 125484020 125484020 + Missense_Mutation SNP G G T rs113399395 alternate_allele TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_152713 exon14 c.G1593T p.Q531H CTATCAGATTACA 40 3 0.08 113 0 0 91 0 0.00 ACVR1B 91 mdanderson.org 37 12 52369070 52369070 + Missense_Mutation SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_004302 exon2 c.G113A p.S38N GCACCAGCTGCCT 47 3 0.06 34 0 0 245 0 0.00 HOXC11 3227 broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 54367505 54367505 + Silent SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . HOXC11 NM_014212 exon1 c.C480T p.C160C CTACTGCGGTGGC 183 39 0.21 94 1 0.0106382979 32 0 0 EP400 57634 broad.mit.edu;mdanderson.org 37 12 132551433 132551433 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . EP400 NM_015409 exon49 c.G8668T p.V2890F GCTGTGGTCTCCT 82 5 0.06 58 0 0 370 150 0 0.00 PROZ 8858 mdanderson.org 37 13 113826050 113826050 + Silent SNP C C A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001256134 exon9 c.C900A p.L300L GGGGCTCCCCGTG 37 3 0.08 36 0 0 8 0 0.00 UNKL 64718 mdanderson.org 37 16 1447227 1447227 + Missense_Mutation SNP G G T rs144818814 bycluster;by1000genomes;alternate_allele TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001193388 exon6 c.C804A p.D268E GCAGCCGTCGCCG 19 3 0.16 20 0 0 10 0 0.00 SPG7 6687 mdanderson.org 37 16 89616973 89616973 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_003119 exon13 c.G1735T p.A579S GGCCACGCCTTGG 55 3 0.05 47 0 0 290 0 0.00 FGF11 2256 mdanderson.org 37 17 7343090 7343090 + Nonsense_Mutation SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_004112 exon1 c.C151T p.R51X AAGGTGCGACTGT 28 3 0.11 32 0 0 0 0 TVP23C 201158 broad.mit.edu 37 17 15441469 15441469 + Splice_Site SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . GTGTTCCGCAAAA 237 6 0.03 294 2 0.0068027211 3 0 0.00 KRT18P55 0 broad.mit.edu 37 17 26633347 26633348 + RNA INS - - G rs35679432 bycluster TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . TGTTGTTTTTTTT 9 5 0.56 9 0 0 0 0 SOCS7 30837 broad.mit.edu 37 17 36508345 36508345 + Missense_Mutation SNP T T G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . SOCS7 NM_014598 exon1 c.T218G p.V73G CGGGGGTCAAGAC 29 3 0.10 29 4 0.1379310345 22 13 0 0.00 MLX 6945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40720884 40720884 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_170607 exon4 c.G361T p.A121S CAGGAGGCCTACA 80 18 0.23 112 0 0 133 51 0.38 CA10 56934 mdanderson.org 37 17 49726574 49726574 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_020178 exon6 c.C603A p.N201K ATCTCTGTTGAGC 43 3 0.07 63 0 0 0 0 C17orf64 124773 mdanderson.org 37 17 58503678 58503678 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_181707 exon3 c.G310T p.E104X GCCTGGGAAATCA 45 3 0.07 53 0 0 0 0 KCNH6 81033 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 61619790 61619790 + Missense_Mutation SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . KCNH6 NM_030779 exon9 c.C2143T p.R715W AACCTGCGGGACG 34 6 0.18 60 0 0 122 1 0 0.00 USP36 57602 mdanderson.org 37 17 76799994 76799994 + Silent SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_025090 exon16 c.G2283A p.L761L GGACAGCAATGTG 33 3 0.09 30 0 0 120 0 0.00 SIRT7 51547 ucsc.edu;bcgsc.ca 37 17 79873553 79873553 + Missense_Mutation SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . SIRT7 NM_016538 exon4 c.C341T p.A114V ATAGACGCTGCCT 42 4 0.10 43 0 0 37 58 0 0.00 EPB41L3 23136 mdanderson.org 37 18 5397245 5397245 + Missense_Mutation SNP C C T rs147247153 bycluster TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_012307 exon18 c.G2653A p.A885T TGAATGCGGGCTG 53 3 0.06 60 0 0 0 1 0 0.00 ONECUT2 9480 mdanderson.org 37 18 55103949 55103949 + Missense_Mutation SNP A A G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_004852 exon1 c.A1001G p.N334S AAATCAACACCAA 40 3 0.08 54 0 0 0 0 VPS4B 9525 mdanderson.org 37 18 61064290 61064290 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_004869 exon9 c.C1069A p.Q357K CTGACTGTACTTT 44 3 0.07 84 1 0.0119047619 36 0 0.00 CAMSAP3 57662 mdanderson.org 37 19 7677132 7677132 + Missense_Mutation SNP T T C novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001080429 exon13 c.T1834C p.S612P GCGGGGTCCCCCA 30 4 0.13 33 1 0.0303030303 65 0 0.00 MUC16 94025 broad.mit.edu 37 19 9046934 9046934 + Missense_Mutation SNP T T C novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . MUC16 NM_024690 exon5 c.A34697G p.E11566G GGGGTCTCACTCA 99 4 0.04 105 0 0 4315 4 0 0.00 ZNF85 7639 mdanderson.org 37 19 21132802 21132802 + Silent SNP C C A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001256171 exon5 c.C1572A p.P524P ATGGCCCTCAACC 47 3 0.06 24 0 0 25 0 0.00 FBXO46 23403 mdanderson.org 37 19 46215771 46215771 + Missense_Mutation SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001080469 exon2 c.C983T p.A328V GCCCTGGCCAGCA 42 3 0.07 56 0 0 39 0 0.00 CCDC8 83987 hgsc.bcm.edu 37 19 46914867 46914867 + Missense_Mutation SNP A A G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 CCDC8,NS,carcinoma,+2,1 CCDC8 NM_032040 exon1 c.T1201C p.S401P CCTCTGACCCCTG 66 3 0.05 56 0 0 2 1 27 0 0.00 MATN3 4148 broad.mit.edu 37 2 20202975 20202975 + Missense_Mutation SNP T T C rs373579350 alternate_allele TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . MATN3 NM_002381 exon3 c.A863G p.H288R TCACAGTGGTGCT 141 4 0.03 55 0 0 28 25 2 0.08 rescued with RNA-seq DYNC2LI1 51626 hgsc.bcm.edu 37 2 44021861 44021861 + Silent SNP A A C novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_015522 exon6 c.A586C p.R196R TTCTTTAGATTTT 170 7 0.04 130 0 0 3 0 0.00 SPHKAP 80309 mdanderson.org 37 2 228996729 228996729 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 SPHKAP_ENST00000392056,NS,carcinoma,0,2 SPHKAP_ENST00000392056 NM_030623 exon2 c.C105A p.S35R CGGGCCGCTTCCT 40 3 0.08 34 0 0 0 2 0 0 EPB41L1 2036 mdanderson.org 37 20 34809815 34809815 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_012156 exon20 c.G2469T p.R823S GACAAGGATCGAG 43 3 0.07 29 0 0 46 0 0.00 KRTAP10-5 386680 broad.mit.edu 37 21 45999711 45999711 + Missense_Mutation SNP C C G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . KRTAP10-5 NM_198694 exon1 c.G745C p.A249P AGCTGGCCTGGTA 26 3 0.12 17 0 0 43 0 0 ITGB2 3689 mdanderson.org 37 21 46308803 46308803 + Missense_Mutation SNP C C T rs200894474 by1000genomes TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001127491 exon14 c.G1885A p.A629T ACTCGGCGCAGGA 25 2 0.08 19 0 0 0 34 0 0.00 IGLL3P 91353 mdanderson.org 37 22 25715896 25715896 + RNA SNP T T A rs145766467 TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . TGGAGATGACCAC 189 6 0.03 109 0 0 0.001 10 3 0.30 rescued with RNA-seq ARPP21 10777 ucsc.edu 37 3 35724364 35724364 + Nonsense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . ARPP21 NM_001267618 exon3 c.G154T p.E52X AATCAAGAAAGAA 34 4 0.12 60 0 0 153 0 0 LRRFIP2 9209 bcgsc.ca 37 3 37100309 37100309 + Silent SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . LRRFIP2 NM_006309 exon26 c.C1842A p.G614G GTCTGAGCCATTC 48 4 0.08 46 0 0 71 113 0 0.00 ULK4 54986 mdanderson.org 37 3 41497052 41497052 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_017886 exon34 c.C3428A p.A1143D TCTGCAGCCTGAG 19 2 0.11 26 0 0 14 0 0.00 DHX30 22907 mdanderson.org 37 3 47891550 47891550 + Silent SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_138615 exon22 c.G3525T p.L1175L GCTACTGGCAGAG 45 3 0.07 37 0 0 68 0 0.00 MAGI1 9223 mdanderson.org 37 3 65425585 65425585 + Silent SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001033057 exon9 c.G1239A p.Q413Q CTGCTGCTGCTGT 40 3 0.08 26 0 0 10 0 0.00 MUC4 4585 mdanderson.org 37 3 195509308 195509308 + Missense_Mutation SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_018406 exon2 c.C9143T p.S3048L GATGCTGAGGAAG 44 3 0.07 32 1 0.03125 3 1 0.33 CXCL6 6372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 74702735 74702735 + Missense_Mutation SNP C C G novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 CXCL6,NS,carcinoma,0,1 CXCL6 NM_002993 exon2 c.C164G p.T55R GCGTTACGCTGAG 65 33 0.51 94 0 0 0 1 0 0 PDE6A 5145 mdanderson.org 37 5 149265907 149265907 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_000440 exon14 c.C1759A p.L587I CCTCTAGGTCCGT 49 3 0.06 63 0 0 0 0 NOL7 51406 broad.mit.edu 37 6 13621014 13621014 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . NOL7 NM_016167 exon8 c.G729T p.R243S CAAGAGGTTTAAA 150 4 0.03 142 0 0 18 577 0 0.00 CYP21A1P 0 broad.mit.edu 37 6 31973462 31973462 + RNA SNP T T C rs6470 byfrequency TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . GCGTCTTGCCATG 26 3 0.12 36 1 0.0277777778 1 0 0.00 ITPR3 3710 mdanderson.org 37 6 33639004 33639004 + Silent SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_002224 exon21 c.G2649A p.R883R GCTGCGGCTCACT 84 4 0.05 79 0 0 46 0 0.00 ABCC10 89845 mdanderson.org 37 6 43406411 43406411 + Missense_Mutation SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001198934 exon8 c.G2005A p.A669T GGCCTGGCCACCC 86 5 0.06 100 0 0 142 0 0.00 TRAM2 9697 broad.mit.edu;mdanderson.org 37 6 52372382 52372382 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . TRAM2 NM_012288 exon7 c.C595A p.L199M GCACCAGGTACAG 74 4 0.05 56 0 0 27 139 0 0.00 FAM185A 222234 broad.mit.edu 37 7 102401776 102401776 + Silent SNP T T G rs2537454 TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . FAM185A NM_001145268 exon4 c.T711G p.G237G AGATGGTTTGCTG 591 6 0.01 267 1 0.0037453184 10 23 0 0.00 FOXP2 93986 broad.mit.edu 37 7 114270000 114270000 + Silent SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 FOXP2,NS,carcinoma,0,6 FOXP2 NM_001172767 exon5 c.G612A p.Q204Q ACAACAGCAGCAG 36 3 0.08 14 0 0 133 6 3 0 0.00 AKR1B1 231 mdanderson.org 37 7 134135644 134135644 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001628 exon3 c.C245A p.T82K TGGTACGTGCACC 43 3 0.07 49 0 0 212 0 0.00 SLC4A2 6522 mdanderson.org 37 7 150772534 150772534 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001199692 exon20 c.G3240T p.K1080N GGACAAGCCCAAG 18 2 0.11 21 0 0 215 0 0.00 DOCK5 80005 mdanderson.org 37 8 25203062 25203062 + Missense_Mutation SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_024940 exon26 c.C2689T p.P897S AACAAGCCTGACC 64 4 0.06 36 0 0 7 0 0.00 FBXW2 26190 bcgsc.ca 37 9 123527003 123527003 + Missense_Mutation SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 FBXW2_ENST00000373926,colon,carcinoma,-1,1 FBXW2 NM_012164 exon8 c.G1199A p.R400H GGCCAGCGACTAA 92 6 0.07 60 0 0 34 1 139 0 0.00 GPR144 347088 mdanderson.org 37 9 127231548 127231548 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_001161808 exon15 c.G2356T p.D786Y CCCCATGACTACG 46 3 0.07 39 0 0 0 0 DPP7 29952 mdanderson.org 37 9 140005139 140005139 + Silent SNP C C T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_013379 exon13 c.G1440A p.Q480Q TGGCTGCTGCTCA 38 3 0.08 21 0 0 51 0 0.00 FAM157B 0 broad.mit.edu 37 9 141124391 141124392 + RNA DEL TG TG - rs367820400 alternate_allele TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . GTGTTTTGTTTTT 106 10 0.09 91 5 0.0549450549 0 0 CYTB 4519 broad.mit.edu 37 MT 14958 14958 + Missense_Mutation SNP G G A novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . ENST00000361789 exon1 c.G212A p.R71Q TCACTCGAGACGT 50 4 0.08 29 0 0 0 0 NUDT10 170685 mdanderson.org 37 X 51076024 51076024 + Silent SNP G G A rs2801626 TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_153183 exon2 c.G207A p.E69E CGAAGAGGCGGGA 276 17 0.06 189 1 0.0052910053 61 0 0.00 BCYRN1 6872 broad.mit.edu;mdanderson.org 37 X 70679039 70679039 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . . . . . GACTCTGATGTAG 35 3 0.09 25 0 0 19 0 0.00 TAZ 6901 mdanderson.org 37 X 153640238 153640238 + Missense_Mutation SNP G G T novel TCGA-S6-A8JX-01A-11D-A435-10 TCGA-S6-A8JX-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9db7d878-2bc2-4a70-aaa0-3b5faa979a17 49af4ca0-0413-4aa6-9eff-cce3c2f799f2 . . NM_181312 exon1 c.G58T p.A20S ACCCTGGCCAGCA 48 3 0.06 23 0 0 13 0 0.00