Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PGD 5226 mdanderson.org 37 1 10479496 10479496 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_002631 exon12 c.G1232T p.S411I CAGTCAGCACTGG 37 3 0.08 29 0 0 376 0 0.00 IFNLR1 163702 mdanderson.org 37 1 24484350 24484350 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_170743 exon7 c.C833A p.T278N TGAAAGGTTGCCA 47 3 0.06 33 0 0 5 0 0.00 SLC26A9 115019 mdanderson.org 37 1 205890930 205890930 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_134325 exon17 c.C1819A p.P607T CGGTGGGGGGCGC 39 3 0.08 40 0 0 0 0 EPHX1 2052 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 226019577 226019577 + Missense_Mutation SNP T T C novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001136018 exon3 c.T281C p.I94T AAGTCATCTCCTA 125 7 0.06 106 0 0 267 8 0.03 OBSCN 84033 mdanderson.org 37 1 228529235 228529235 + Missense_Mutation SNP A A G novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001271223 exon85 c.A20825G p.Q6942R TGCTGCAGGCACG 33 3 0.09 29 0 0 5 0 0.00 FMN2 56776 broad.mit.edu;mdanderson.org 37 1 240371502 240371502 + Silent SNP C C T rs200984130 TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . FMN2 NM_020066 exon5 c.C3390T p.P1130P CATACCCCCTCCT 55 6 0.11 35 0 0 451 0 0 ZNF692 55657 mdanderson.org 37 1 249148143 249148143 + Silent SNP C C T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001136036 exon10 c.G1161A p.L387L ACTGTGCAGCTTC 68 4 0.06 57 0 0 43 0 0.00 PIPSL 0 broad.mit.edu 37 10 95718362 95718377 + RNA DEL TTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTC - novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 TTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . TTTTCTTTTCTTT 18 9 0.50 6 0 0 0 0 OR51B4 79339 hgsc.bcm.edu 37 11 5322649 5322649 + Silent SNP G G A rs377539411 TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_033179 exon1 c.C528T p.C176C ATGGAGGCAAAAT 94 4 0.04 105 0 0 0 0 OR5M3 219482 ucsc.edu 37 11 56237578 56237578 + Silent SNP A A G rs61902881 bycluster TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . OR5M3 NM_001004742 exon1 c.T396C p.S132S CATTTTACTGCCA 44 6 0.14 57 2 0.0350877193 103 0 0 WDR74 54663 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62601760 62601760 + Missense_Mutation SNP C C A novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . WDR74 NM_018093 exon9 c.G763T p.D255Y GAAGGTCAATTTC 107 7 0.07 105 0 0 36 190 44 0.23 RELA 5970 mdanderson.org 37 11 65425788 65425788 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001243985 exon8 c.C847A p.P283T CCATGGGCTCACT 39 3 0.08 64 0 0 146 0 0.00 UVRAG 7405 broad.mit.edu 37 11 75852423 75852423 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . UVRAG NM_003369 exon15 c.G2066T p.S689I TATCCAGCTTCCG 48 3 0.06 24 0 0 69 58 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398285 25398285 + Missense_Mutation SNP C C T rs121913530 bycluster TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G34A p.G12S CGCCACCAGCTCC 188 23 0.12 143 0 0 1 25136 25 3 0.12 LTA4H 4048 hgsc.bcm.edu 37 12 96400148 96400148 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_000895 exon16 c.C1474A p.L492M CCTTCAGGTCTGT 87 4 0.05 45 0 0 247 0 0.00 SMAD9 4093 mdanderson.org 37 13 37453517 37453517 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_005905 exon2 c.C310A p.H104N CGTGGTGGGACTG 41 3 0.07 36 0 0 3 0 0.00 . 0 broad.mit.edu 37 14 53265373 53265373 + RNA DEL T T - rs72362578 TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . TTGTAATTTTTTT 6 2 0.33 4 0 0 0 0 . 28452 bcgsc.ca 37 14 106518415 106518415 + RNA SNP C C A rs188349361 bycluster;byfrequency TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . GTAATACACAGCC 227 26 0.11 164 3 0.0182926829 2901 410 0.14 SLTM 79811 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 59192108 59192108 + Silent SNP T T C novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_024755 exon7 c.A618G p.Q206Q TACTTCTTGTGTA 78 6 0.08 52 0 0 41 1 0.02 HCN4 10021 mdanderson.org 37 15 73660493 73660493 + Missense_Mutation SNP C C T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_005477 exon1 c.G119A p.R40H TCTTGGCGGCCCC 37 3 0.08 22 0 0 1 0 0.00 SLCO3A1 28232 hgsc.bcm.edu 37 15 92694221 92694221 + Missense_Mutation SNP T T C novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_013272 exon9 c.T1730C p.L577P GAGTTCTTTTTCT 92 4 0.04 45 0 0 42 1 0.02 FLYWCH1 84256 mdanderson.org 37 16 2987340 2987340 + Missense_Mutation SNP C C T rs370316946 TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_020912 exon7 c.C1729T p.R577W GCCCTGCGGCAGC 13 2 0.15 17 0 0 22 0 0.00 IL34 146433 mdanderson.org 37 16 70690989 70690989 + Nonsense_Mutation SNP G G T rs8046424 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001172772 exon5 c.G367T p.E123X GAGGTGGAGACGC 56 3 0.05 57 0 0 45 0 0.00 . 0 broad.mit.edu 37 17 20459719 20459719 + RNA DEL A A - novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . ATATATATATATA 45 11 0.24 105 4 0.0380952381 0 0 RARA 0 broad.mit.edu 37 17 38510615 38510615 + Missense_Mutation SNP T T C novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . RARA NM_000964 exon7 c.T869C p.L290P ACGGGCTGACCCT 136 5 0.04 104 0 0 52 94 4 0.04 rescued with RNA-seq TBC1D3P1-DHX40P1 653645 bcgsc.ca 37 17 58066651 58066651 + RNA SNP C C T rs376360537 TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . GTAAAGCTGTTTA 327 28 0.09 255 8 0.031372549 0 0 NOTCH3 4854 bcgsc.ca 37 19 15291593 15291593 + Missense_Mutation SNP C C T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . NOTCH3 NM_000435 exon19 c.G3041A p.R1014H ACGCAGCGACCCC 43 4 0.09 46 0 0 340 31 0 0.00 CEACAM7 1087 bcgsc.ca 37 19 42190800 42190800 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . CEACAM7 NM_006890 exon2 c.C417A p.F139L TACGTAGAATTGT 167 7 0.04 109 1 0.0091743119 33 0 0 ZNF526 116115 ucsc.edu 37 19 42729230 42729230 + Missense_Mutation SNP A A G novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . ZNF526 NM_133444 exon3 c.A675G p.K225K AGAGAAAGAGGAG 94 1 0.01 87 0 0 51 40 5 0.13 ZNF28 7576 ucsc.edu 37 19 53304611 53304611 + Missense_Mutation SNP G G C novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . ZNF28 NM_006969 exon4 c.C487G p.Q163E CAACTTGATTACC 107 5 0.05 69 2 0.0289855072 191 14 4 0.29 ZNF264 9422 mdanderson.org 37 19 57723163 57723163 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_003417 exon4 c.G698T p.C233F ATGAATGCACAGA 54 3 0.06 56 0 0 9 0 0.00 EML6 400954 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 2 55138179 55138179 + Silent SNP G G A novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001039753 exon24 c.G3498A p.E1166E TTCAGAGGTAATA 315 19 0.06 252 0 0 0 0 . 0 bcgsc.ca 37 2 130987233 130987233 + RNA SNP C C T rs72863885 bycluster;byfrequency TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . CTTCAGCGACTCG 43 17 0.40 30 1 0.0333333333 2 0 0.00 . 0 bcgsc.ca 37 2 130987239 130987239 + RNA SNP G G A rs72863888 bycluster TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . CGACTCGGACAGC 41 17 0.41 29 1 0.0344827586 2 0 0.00 . 0 bcgsc.ca 37 2 130987270 130987270 + RNA SNP C C A rs112519538 bycluster TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . CCGTTCCACTCCC 43 13 0.30 33 1 0.0303030303 1 0 0.00 . 0 bcgsc.ca 37 2 130987282 130987282 + RNA SNP T T G rs113034866 bycluster TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . CTGCCATATGTGC 47 13 0.28 37 1 0.027027027 1 0 0.00 MCM6 4175 mdanderson.org 37 2 136615517 136615517 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_005915 exon10 c.C1420A p.H474N CTTCATGAATAGC 121 5 0.04 96 0 0 122 0 0.00 NCOA3 8202 hgsc.bcm.edu;mdanderson.org 37 20 46279845 46279845 + Silent SNP G G A novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 NCOA3,NS,carcinoma,0,1 NCOA3 NM_181659 exon20 c.G3771A p.Q1257Q GCAGCAGCAGCAG 81 14 0.17 76 0 0 0 1 33 0 0.00 DIP2A 23181 mdanderson.org 37 21 47969714 47969714 + Silent SNP C C T rs199823306 bycluster;by1000genomes TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_206889 exon22 c.C2553T p.H851H GCTGCACGACGAC 47 3 0.06 36 0 0 0 18 0 0.00 CRYBB2P1 0 broad.mit.edu 37 22 25855682 25855683 + RNA INS - - GT rs71322752 bycluster;by1000genomes TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . GCAGCTGGTGTGT 7 3 0.43 5 0 0 4 0 0.00 CRELD2 79174 mdanderson.org 37 22 50319192 50319192 + Silent SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 CRELD2_ENST00000404488,NS,malignant_melanoma,+2,2 CRELD2_ENST00000404488 NM_001135101 exon10 c.G1143T p.P381P TGTGCCGCCGGCA 40 3 0.08 43 0 0 2 2 195 0 0.00 STAB1 23166 mdanderson.org 37 3 52552811 52552811 + Missense_Mutation SNP C C T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_015136 exon48 c.C4960T p.R1654W CGGCTGCGGAGCG 75 4 0.05 40 0 0 25 0 0.00 KIT 3815 broad.mit.edu 37 4 55593613 55593613 + Missense_Mutation SNP T T G rs121913521 bycluster TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 KIT,NS,carcinoma,-1,66 KIT NM_000222 exon11 c.T1679G p.V560G AGGTTGTTGAGGA 113 4 0.04 79 0 0 7396 66 29 18 0.62 rescued with RNA-seq ANK2 287 mdanderson.org 37 4 114263059 114263059 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001148 exon33 c.G4109T p.S1370I CCAGAAGCAGGGA 40 3 0.08 39 0 0 18 0 0.00 IRX2 153572 mdanderson.org 37 5 2749899 2749899 + Silent SNP G G T rs149245392 bycluster;byfrequency;by1000genomes TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001134222 exon2 c.C252A p.G84G GGGTGCGCCCTGG 23 3 0.13 18 0 0 0.004 0 0 IL7R 3575 broad.mit.edu 37 5 35875632 35875632 + Missense_Mutation SNP G G C novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . IL7R NM_002185 exon7 c.G819C p.W273C CGTATGGCCCAGT 133 9 0.07 77 0 0 200 223 0 0.00 NIPBL 25836 mdanderson.org 37 5 36986049 36986049 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_015384 exon10 c.G2767T p.G923C ACAGAGGGTAACA 42 3 0.07 58 0 0 17 0 0.00 SLC22A16 85413 mdanderson.org 37 6 110768107 110768107 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_033125 exon3 c.C620A p.T207N ATGAAGGTGTAAT 47 3 0.06 59 0 0 0 0 ARID1B 57492 broad.mit.edu;mdanderson.org 37 6 157100005 157100005 + Silent SNP C C A rs184815562 bycluster;by1000genomes TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . ARID1B NM_017519 exon1 c.C942A p.G314G CGGCGGCGGAGGA 45 6 0.13 36 0 0 320 0 0 ARPC1B 10095 mdanderson.org 37 7 98988687 98988687 + Missense_Mutation SNP C C A novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_005720 exon6 c.C672A p.S224R CGACAGCACCGTC 41 3 0.07 28 0 0 1230 0 0.00 FOXP2 93986 broad.mit.edu;mdanderson.org 37 7 114270000 114270000 + Silent SNP G G A novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 FOXP2,NS,carcinoma,0,6 FOXP2 NM_001172767 exon5 c.G612A p.Q204Q ACAACAGCAGCAG 27 5 0.19 13 0 0 133 6 0 0 ZNF786 136051 mdanderson.org 37 7 148769129 148769129 + Silent SNP G G A novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_152411 exon4 c.C735T p.C245C CTTACCGCACACG 44 3 0.07 46 0 0 3 0 0.00 REPIN1 29803 mdanderson.org 37 7 150069137 150069137 + Silent SNP C C T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001099695 exon3 c.C978T p.C326C CGAGTGCGGGAAG 38 3 0.08 28 0 0 49 0 0.00 SGK223 0 mdanderson.org 37 8 8176578 8176578 + Missense_Mutation SNP G G A rs200725218 bycluster;by1000genomes TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001080826 exon5 c.C3307T p.R1103W AGTCCCGCACGAA 36 3 0.08 27 0 0 0.002 31 0 0.00 PLEC 5339 mdanderson.org 37 8 144992667 144992667 + Silent SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_201380 exon32 c.C11733A p.P3911P GGTGTAGGGGTCA 35 3 0.09 28 0 0 110 0 0.00 MROH1 727957 mdanderson.org 37 8 145267992 145267992 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_001099280 exon13 c.G1237T p.D413Y CCTGCTGATCTAA 41 3 0.07 38 0 0 14 0 0.00 CPSF1 29894 mdanderson.org 37 8 145622455 145622455 + Silent SNP C C T rs113296524 bycluster;byfrequency;by1000genomes TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_013291 exon23 c.G2559A p.A853A GCCCAGCGCCACC 13 2 0.15 21 0 0 0.009 46 0 0.00 WNK3 65267 mdanderson.org 37 X 54263899 54263899 + Missense_Mutation SNP G G T novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . NM_020922 exon20 c.C4100A p.S1367Y TCACTAGAATGGT 16 2 0.13 18 0 0 3 0 0.00 MAGEA10-MAGEA5 0 broad.mit.edu 37 X 151296337 151296337 + RNA DEL A A - novel TCGA-4K-AA1H-01A-11D-A435-10 TCGA-4K-AA1H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d16db8a0-c864-4e5d-be62-73087e35b0c1 642a50a5-f7ea-4e8c-a370-94d09c675725 . . . . . . TTCCAGAAAAAAA 12 7 0.58 4 0 0 0 0