Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV FAM43B 163933 broad.mit.edu 37 1 20880268 20880270 + In_Frame_Del DEL GAG GAG - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . FAM43B NM_207334 exon1 c.802_804del p.268_268del GAGGACGAGGAGG 7 3 0.43 3 0 0 10 1 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145109290 145109306 + RNA DEL AAAGAAAAAAAAAAACC AAAGAAAAAAAAAAACC - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 AAAGAAAAAAAAAAACC AAAGAAAAAAAAAAACC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . AAAAAAAAAGAAA 12 4 0.33 12 0 0 1 0 0.00 LOR 4014 broad.mit.edu 37 1 153233515 153233515 + Silent SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . LOR NM_000427 exon2 c.C90T p.G30G CAGCGGCGGTGGT 90 4 0.04 54 0 0 19 0 0 APOA1BP 128240 broad.mit.edu 37 1 156562379 156562379 + Missense_Mutation SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . APOA1BP NM_144772 exon4 c.A433G p.R145G CCCAAAAGGCCTA 114 3 0.03 65 0 0 16 292 0 0.00 DDX59 83479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 200618324 200618324 + Missense_Mutation SNP C C G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_001031725 exon6 c.G1345C p.V449L CAAATACTAACAC 169 48 0.28 156 0 0 54 19 0.35 . 0 broad.mit.edu 37 1 247401118 247401118 + RNA DEL A A - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . ATTTTTAATGACA 6 2 0.33 8 0 0 0 0 OTUD1 220213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 23729299 23729299 + Missense_Mutation SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_001145373 exon1 c.C913T p.R305W TATCTGCGGCAGA 43 10 0.23 59 0 0 15 4 0.27 PPA1 5464 hgsc.bcm.edu 37 10 71969413 71969413 + Silent SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb PPA1,NS,carcinoma,-1,1 PPA1 NM_021129 exon7 c.T540C p.P180P GTAGCCAGGTTTC 127 7 0.06 108 2 0.0185185185 -1 1 543 1 0.00 PPRC1 23082 ucsc.edu 37 10 103904028 103904028 + Missense_Mutation SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . PPRC1 NM_015062 exon7 c.C3572T p.P1191L CTCCTCCGGCTCC 40 4 0.10 45 0 0 151 109 0 0.00 VWA2 340706 broad.mit.edu;bcgsc.ca 37 10 116050067 116050067 + Missense_Mutation SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . VWA2 NM_001272046 exon13 c.A2191G p.N731D CTGCAGAATGGGA 45 4 0.09 49 0 0 64 4 0 0.00 KRTAP5-10 387273 broad.mit.edu 37 11 71276851 71276851 + Missense_Mutation SNP A A G rs201070584 byfrequency TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb KRTAP5-10,NS,carcinoma,-1,1 KRTAP5-10 NM_001012710 exon1 c.A218G p.D73G AGGGGGACTGTGG 37 8 0.22 46 12 0.2608695652 37 1 0 0 ATN1 1822 hgsc.bcm.edu 37 12 7045915 7045915 + Missense_Mutation SNP G G T rs148885085 bycluster;byfrequency;alternate_allele TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb ATN1,colon,carcinoma,0,1 ATN1 NM_001007026 exon5 c.G1485T p.Q495H GCAGCAGCAGCAG 190 9 0.05 44 1 0.0227272727 0 1 497 1 0.00 LMO3 55885 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 16713458 16713458 + Missense_Mutation SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_001243613 exon5 c.C287A p.T96K TTTCCCGTTACAC 247 14 0.06 83 0 0 4 1 0.25 DDX11 1663 broad.mit.edu 37 12 31238044 31238044 + Frame_Shift_Del DEL A A - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . DDX11 NM_030653 exon5 c.622delA p.K208fs GAGGAGAAAAAGG 805 8 0.01 178 0 0 188 268 0 0.00 KRT72 140807 broad.mit.edu;bcgsc.ca 37 12 52985290 52985290 + Silent SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . KRT72 NM_001146225 exon5 c.C921A p.A307A CTTTAGGGCAATC 110 32 0.29 74 0 0 70 1 1 1.00 ANAPC5 51433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 121775139 121775139 + Silent SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_016237 exon6 c.G714A p.K238K TAATTCCTTCTGC 53 30 0.57 62 0 0 154 102 0.66 IRS2 8660 hgsc.bcm.edu;broad.mit.edu 37 13 110435932 110435932 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_003749 exon1 c.C2469A p.Y823X GAGCACGTACTGG 57 16 0.28 64 0 0 11 8 0.73 . 144 bcgsc.ca 37 13 111591851 111591851 + RNA SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . TTAATCCTGTCGG 16 4 0.25 27 0 0 0 0 MAPK1IP1L 93487 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 55529374 55529374 + Silent SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . MAPK1IP1L NM_144578 exon3 c.C57T p.T19T CAAAACCTCTGCT 72 28 0.39 70 1 0.0142857143 14 227 100 0.44 DYNC1H1 1778 broad.mit.edu 37 14 102496591 102496591 + Silent SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . DYNC1H1 NM_001376 exon51 c.G9855T p.V3285V TAAGGTGGAACCT 54 3 0.06 78 0 0 395 187 0 0.00 CCDC78 124093 ucsc.edu 37 16 772996 772996 + Missense_Mutation SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . CCDC78 NM_001031737 exon13 c.G1223A p.S408N CAGCAGCTGTGCC 41 4 0.10 32 0 0 26 25 0 0.00 SMG1 23049 broad.mit.edu 37 16 18844328 18844328 + Missense_Mutation SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . SMG1 NM_015092 exon51 c.C8726A p.A2909D AAGTAGGCCTGAA 172 4 0.02 126 0 0 401 28 0 0.00 CCDC102A 92922 ucsc.edu 37 16 57552624 57552624 + Silent SNP G G A rs141241860 bycluster;byfrequency;by1000genomes TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . CCDC102A NM_033212 exon5 c.C951T p.D317D CAGCTCGTCCTGG 33 4 0.12 30 0 0 22 35 0 0.00 BAHCC1 57597 ucsc.edu 37 17 79410887 79410887 + Missense_Mutation SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . BAHCC1 . . . . GGAGGAGAGGACG 22 4 0.18 11 0 0 110 0 0 LIG1 3978 bcgsc.ca 37 19 48634358 48634358 + Missense_Mutation SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . LIG1 NM_000234 exon19 c.C1796A p.P599Q ATGTCCGGGTACT 45 4 0.09 51 0 0 151 305 0 0.00 MYH14 79784 ucsc.edu 37 19 50764815 50764815 + Silent SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . MYH14 NM_001145809 exon21 c.G2508T p.L836L CCAGCTGGAAGAG 39 4 0.10 25 0 0 261 35 0 0.00 CEACAM18 729767 bcgsc.ca 37 19 51983738 51983738 + Silent SNP C C T rs61746204 bycluster;by1000genomes TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . CEACAM18 NM_001080405 exon3 c.C387T p.S129S CGACAGCGCAGGA 90 5 0.06 80 0 0 96 0 0 GCKR 2646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 27730108 27730108 + Missense_Mutation SNP G G A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb GCKR,rectum,carcinoma,0,1 GCKR NM_001486 exon13 c.G1073A p.R358Q ATTTCCGAGATGT 66 18 0.27 49 0 0 0 1 0 0 ZAK 0 broad.mit.edu 37 2 174130916 174130916 + Missense_Mutation SNP C C T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . ZAK NM_016653 exon20 c.C1841T p.A614V CTGCTGCTGTGAG 114 5 0.04 101 0 0 62 7 0 0.00 WNT6 7475 broad.mit.edu 37 2 219724790 219724792 + In_Frame_Del DEL GCT GCT - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 GCT GCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . WNT6 NM_006522 exon1 c.30_32del p.10_11del CCTCGGGCTGCTG 11 4 0.36 4 0 0 21 4 0 0.00 TPTEP1 0 broad.mit.edu 37 22 17127506 17127507 + RNA INS - - A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . CCTAGAGAAAAAA 6 2 0.33 4 0 0 0 0 GGT3P 0 broad.mit.edu 37 22 18775534 18775535 + RNA INS - - T rs200142078 by1000genomes TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . CTTTCTCTTTTTT 39 0 0.00 40 3 0.075 0 0 TANGO2 0 ucsc.edu;bcgsc.ca 37 22 20043537 20043537 + Splice_Site SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . TANGO2 NM_152906 exon6 c.451+1G>T . CGCCAGGTGAGCC 36 4 0.11 35 0 0 4 0 0 RAD54L2 23132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 51694124 51694124 + Missense_Mutation SNP G G A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_015106 exon21 c.G3399A p.M1133I TCGGATGGCTGCC 156 36 0.23 108 0 0 17 8 0.47 . 0 broad.mit.edu 37 3 159818946 159818946 + RNA SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . AGAAAAAGACCTC 125 4 0.03 101 0 0 10 0 0.00 . 0 broad.mit.edu 37 3 159820488 159820488 + RNA SNP C C T rs6778335 bycluster;byfrequency;byhapmap;by1000genomes TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . TTCCCCCGTCATG 77 4 0.05 72 0 0 21 0 0.00 OTUD4 54726 hgsc.bcm.edu 37 4 146059041 146059041 + Silent SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb OTUD4,bladder,carcinoma,0,2 OTUD4 NM_001102653 exon21 c.T2691C p.H897H GGGAGGATGAGCC 77 4 0.05 80 1 0.0125 0 2 32 0 0.00 FLT4 2324 broad.mit.edu;ucsc.edu 37 5 180052904 180052904 + Silent SNP G G T novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . FLT4 NM_182925 exon10 c.C1386A p.P462P TGTCCAGGGCCGC 44 4 0.09 55 0 0 356 2 0 0.00 MUC21 394263 hgsc.bcm.edu 37 6 30955043 30955043 + Missense_Mutation SNP G G A rs9262385 bycluster;byfrequency TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb MUC21,NS,neuroblastoma,0,1 MUC21 NM_001010909 exon2 c.G1091A p.G364E ACTCTGGGTCCAG 22 2 0.09 20 2 0.1 0.008 0 1 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 51612794 51612794 + Missense_Mutation SNP G G A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_170724 exon58 c.C9620T p.A3207V CTGGTGGCCACAA 180 52 0.29 110 0 0 0 0 ARMC2 84071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 109274550 109274550 + Silent SNP G G A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_032131 exon13 c.G1911A p.T637T GACCACGCTGGGT 17 7 0.41 11 0 0 2 0 0.00 INHBA-AS1 0 broad.mit.edu 37 7 41797976 41797976 + RNA DEL T T - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . CACTGATTTTTTT 6 2 0.33 8 0 0 0 0 MTERF 7978 broad.mit.edu 37 7 91503609 91503609 + Missense_Mutation SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . MTERF NM_006980 exon3 c.T499C p.F167L GAAAAAAGGATTC 106 4 0.04 76 0 0 32 39 0 0.00 GIGYF1 64599 ucsc.edu 37 7 100282144 100282144 + Missense_Mutation SNP G G A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . GIGYF1 NM_022574 exon13 c.C1558T p.P520S CCAGCGGCTGGAA 42 4 0.10 35 0 0 113 172 0 0.00 ZNF398 57541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 148863275 148863275 + Missense_Mutation SNP C C G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . NM_170686 exon3 c.C446G p.S149C ATGTCTCCATCTA 144 41 0.28 123 0 0 106 26 0.25 ST18 9705 broad.mit.edu 37 8 53062411 53062411 + Missense_Mutation SNP A A G novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . ST18 NM_014682 exon16 c.T1933C p.F645L TTTTGAATGGGGA 140 3 0.02 73 0 0 212 0 0 PTENP1 0 broad.mit.edu;bcgsc.ca 37 9 33675590 33675590 + RNA SNP G G C novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . TTGACGGCTCCTC 247 8 0.03 233 0 0 52 0 0.00 FAM205B 0 broad.mit.edu 37 9 34832997 34832997 + RNA SNP C C T rs77983392 TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . FAM205B . . . . AAGCTACGGCTCC 51 5 0.10 57 1 0.0175438596 10 0 0 PGM5P2 0 broad.mit.edu 37 9 69082095 69082095 + RNA DEL A A - novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . AATATCAATTTTA 25 6 0.24 36 3 0.0833333333 0 0 . 84443 bcgsc.ca 37 X 106846480 106846480 + Silent SNP G G A novel TCGA-2G-AAM2-01A-11D-A435-10 TCGA-2G-AAM2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 41feee46-1a42-47e4-9136-5346983071dc 7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb . . . . . . ACAACAGCAGCAG 126 7 0.06 81 0 0 16 0 0.00