Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CROCCP2 0 broad.mit.edu 37 1 16945182 16945184 + RNA DEL AAT AAT - novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 AAT AAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . GATGAAAATAATA 8 3 0.38 4 0 0 28 0 0.00 USP48 84196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 22028019 22028019 + Missense_Mutation SNP T T C novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_032236 exon22 c.A2699G p.D900G TCTCCATCTGGTT 77 15 0.19 79 0 0 131 41 0.31 ATPAF1 64756 mdanderson.org 37 1 47101480 47101480 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_022745 exon9 c.C1024A p.L342M ATTTCAGTTCTGC 40 3 0.08 43 0 0 50 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145109284 145109292 + RNA DEL AAAAAAAAA AAAAAAAAA - rs34197869 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 AAAAAAAAA AAAAAAAAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . CGTCTCAAAAAAA 6 2 0.33 5 0 0 0 0 HRNR 388697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152191287 152191287 + Missense_Mutation SNP G G C novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001009931 exon3 c.C2818G p.Q940E AGGACTGCCCTGA 59 21 0.36 67 0 0 0 0 ADARB2-AS1 642394 hgsc.bcm.edu 37 10 1578121 1578121 + RNA SNP G G C novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . GTCCCAGTCTTTT 39 5 0.13 39 0 0 0 0 ITIH5 80760 mdanderson.org 37 10 7618459 7618459 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001001851 exon10 c.C1935A p.P645P CGGTTCGGGTCCC 18 3 0.17 29 0 0 13 0 0.00 EIF3A 8661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 120820788 120820788 + Missense_Mutation SNP T T C novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_003750 exon8 c.A1175G p.N392S AGCCAATTGTAAA 100 31 0.31 150 0 0 53 27 0.51 MUC2 4583 mdanderson.org 37 11 1093434 1093434 + Silent SNP C C T rs12786901 bycluster TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_002457 exon30 c.C5253T p.T1751T CACCACCACGGTG 24 2 0.08 30 1 0.0333333333 0 0 BSCL2 26580 mdanderson.org 37 11 62473086 62473086 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001122955 exon2 c.C91A p.P31T CTGGTGGTTCCTG 36 3 0.08 31 0 0 69 0 0.00 ANO1 55107 mdanderson.org 37 11 69972215 69972215 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_018043 exon10 c.G1011T p.V337V GGGCGTGTACACC 71 4 0.06 79 0 0 4 0 0.00 DYNC2H1 79659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 103093789 103093789 + Silent SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001377 exon59 c.G9327A p.L3109L TCCTTTGGAAACT 26 17 0.65 57 0 0 1 1 1.00 LOC643733 0 broad.mit.edu 37 11 104774061 104774061 + RNA DEL A A - novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . ATCAACAAAGTAC 6 2 0.33 6 0 0 0 0 PRH1-PRR4 0 hgsc.bcm.edu 37 12 11117118 11117118 + RNA SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . TAGGATGAATGAA 22 10 0.45 12 0 0 1 0 0.00 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Missense_Mutation SNP G G A rs199599214 byfrequency TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 TUBA1C,colon,carcinoma,0,1 TUBA1C NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG 204 14 0.07 199 16 0.0804020101 32 1 1488 686 0.46 PDE1B 5153 mdanderson.org 37 12 54960850 54960850 + Missense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_000924 exon3 c.C206T p.A69V TGGAAGCCGTCTA 39 3 0.08 32 0 0 1 0 0.00 LHX5 64211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113906210 113906210 + Splice_Site SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_022363 exon4 c.398-1G>A . ATGACACTGCGGG 75 31 0.41 76 0 0 0 0 AACS 65985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 125626747 125626747 + Missense_Mutation SNP G G A rs146784734 bycluster;by1000genomes TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_023928 exon18 c.G1991A p.R664Q TGTACCGGGACAT 101 22 0.22 95 0 0 0 104 33 0.32 DDX51 317781 mdanderson.org 37 12 132626108 132626108 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 DDX51,NS,carcinoma,0,1 DDX51 NM_175066 exon7 c.C1039A p.P347T GGCCGGGGGTGGC 14 2 0.14 13 0 0 0 1 56 0 0.00 . 220112 bcgsc.ca 37 13 52482429 52482429 + RNA SNP T T C rs6561654 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . ACTCTATCTTCAG 14 5 0.36 24 1 0.0416666667 0 0 LMO7 4008 mdanderson.org 37 13 76427264 76427264 + Silent SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_015842 exon25 c.C3702T p.S1234S CCGATCCAATTCT 42 3 0.07 39 0 0 32 0 0.00 IPO5 3843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 98667828 98667828 + Silent SNP T T C novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_002271 exon23 c.T2424C p.F808F ACACTTTGAAGAA 48 11 0.23 85 0 0 136 63 0.46 CHAMP1 283489 mdanderson.org 37 13 115091687 115091687 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_032436 exon3 c.G2370T p.R790R AAGCCGGCATAAT 45 5 0.11 65 0 0 32 0 0.00 METTL3 56339 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 21967677 21967677 + Missense_Mutation SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 METTL3,NS,malignant_melanoma,+1,2 METTL3 NM_019852 exon8 c.C1411T p.R471C CTGTACGGCCTGT 204 7 0.03 177 0 0 48 2 112 0 0.00 FUT8 2530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 66209100 66209100 + Missense_Mutation SNP A A G novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_178155 exon11 c.A1700G p.Y567C TCAAGTACCCCAC 72 21 0.29 78 0 0 74 21 0.28 PTGR2 145482 mdanderson.org 37 14 74350831 74350831 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_152444 exon10 c.G1007T p.G336V CAGGAGGTAACAT 36 3 0.08 30 0 0 11 0 0.00 SLC25A29 123096 mdanderson.org 37 14 100758759 100758759 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001039355 exon4 c.C773A p.A258D GGGAAGGCGCGCA 18 2 0.11 8 0 0 32 0 0.00 PDCD7 10081 mdanderson.org 37 15 65426076 65426076 + Missense_Mutation SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_005707 exon1 c.C44T p.P15L GGGGGCGGTGGGC 34 3 0.09 35 0 0 7 0 0.00 . 0 broad.mit.edu 37 16 67415 67415 + Missense_Mutation SNP C C A rs17857358 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . GAAAGTCCTTCAG 27 6 0.22 34 0 0 2 1 0.50 TMEM8A 58986 broad.mit.edu;mdanderson.org 37 16 426323 426323 + Missense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . TMEM8A NM_021259 exon6 c.G1037A p.R346H GGGCTGCGGTCCA 35 3 0.09 39 0 0 49 94 0 0.00 ZNF423 23090 mdanderson.org 37 16 49670885 49670885 + Missense_Mutation SNP C C A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_015069 exon4 c.G2178T p.Q726H GACCTCCTGACAC 34 3 0.09 43 0 0 22 0 0.00 ZFHX3 463 mdanderson.org 37 16 72993363 72993363 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_006885 exon2 c.C682A p.L228M TGTGCAGGACGGG 94 5 0.05 114 0 0 0 0 PIEZO1 9780 broad.mit.edu;ucsc.edu;mdanderson.org 37 16 88783025 88783025 + Missense_Mutation SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . PIEZO1 NM_001142864 exon47 c.C6868T p.R2290W GCTCCCGCTTCAT 32 4 0.13 38 0 0 79 60 0 0.00 FLII 2314 mdanderson.org 37 17 18154278 18154278 + Silent SNP G G A rs144125005 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_002018 exon14 c.C1650T p.G550G CTCCCCGCCAATC 28 3 0.11 34 0 0 0 78 0 0.00 CCL5 6352 bcgsc.ca;mdanderson.org 37 17 34207264 34207264 + Missense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . CCL5 NM_002985 exon1 c.G46A p.A16T AGAGGGCAGTAGC 64 5 0.08 64 0 0 6 86 0 0.00 HEXIM1 0 broad.mit.edu 37 17 43229644 43229645 + RNA INS - - T rs71136074 bycluster TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . HEXIM1 . . . . TTCTTTATTTTTT 11 5 0.45 7 0 0 25 0 0 C17orf80 55028 mdanderson.org 37 17 71233050 71233050 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001100622 exon3 c.G1429T p.V477L CTAGGGGTGTTGC 41 3 0.07 36 0 0 24 0 0.00 RBFOX3 146713 mdanderson.org 37 17 77102854 77102854 + Missense_Mutation SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001082575 exon6 c.G239T p.G80V GTCTGTGCCGCCT 37 3 0.08 18 0 0 17 0 0.00 LOC644669 0 broad.mit.edu 37 18 15317007 15317007 + RNA DEL C C - novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . AATTCTCCTACCT 6 3 0.50 7 0 0 0 0 C18orf8 29919 mdanderson.org 37 18 21109168 21109168 + Missense_Mutation SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_013326 exon15 c.G1322A p.S441N GCCGAAGCAGCCC 36 3 0.08 24 0 0 18 0 0.00 ZNF396 252884 hgsc.bcm.edu 37 18 32949292 32949292 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 ZNF396,NS,carcinoma,+1,1 ZNF396 NM_145756 exon4 c.C895A p.R299R GGGTTCGTCGATG 70 3 0.04 126 0 0 1 1 0 0 ST8SIA5 29906 mdanderson.org 37 18 44260338 44260338 + Silent SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_013305 exon7 c.C798T p.D266D GAAGTCGTCCAGC 51 3 0.06 71 0 0 6 0 0.00 MEX3C 51320 mdanderson.org 37 18 48723021 48723021 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_016626 exon1 c.C670A p.L224M GGAGCAGGGCCGC 12 2 0.17 20 0 0 8 0 0.00 DCC 1630 mdanderson.org 37 18 51053066 51053066 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_005215 exon28 c.G4191T p.V1397V TCCTGTGTCTGTG 42 3 0.07 69 0 0 2 0 0.00 MALT1 10892 mdanderson.org 37 18 56402546 56402546 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_006785 exon13 c.G1588T p.D530Y TTACTGGATGAAG 11 2 0.18 23 0 0 8 0 0.00 SUGP1 57794 mdanderson.org 37 19 19416859 19416859 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_172231 exon4 c.C337A p.P113T TGGGAGGGGCGCT 42 3 0.07 26 0 0 54 0 0.00 CAPNS1 826 broad.mit.edu;bcgsc.ca 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . CAPNS1 NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 88 9 0.10 106 1 0.0094339623 19 5 1 0.20 ALDH16A1 126133 mdanderson.org 37 19 49972188 49972188 + Missense_Mutation SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_153329 exon16 c.G2192A p.R731H TGACCCGCTGCCT 15 3 0.20 17 0 0 242 0 0.00 MEMO1 51072 mdanderson.org 37 2 32168448 32168448 + Silent SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_015955 exon2 c.G66A p.P22P CAGCTGCGGTCCT 35 3 0.09 23 0 0 3 0 0.00 HOXD13 3239 mdanderson.org 37 2 176957928 176957928 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_000523 exon1 c.G310T p.A104S CCCCCAGCCAAAG 39 3 0.08 33 0 0 3 0 0.00 TTN 7273 broad.mit.edu 37 2 179595012 179595012 + Missense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . TTN NM_001267550 exon62 c.G18115A p.A6039T TGGGTGCAGTGCC 80 4 0.05 72 0 0 18412 0 0 SPAG16 79582 mdanderson.org 37 2 214149283 214149283 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_024532 exon1 c.G76T p.A26S ACGGCAGCCGGGG 46 3 0.07 36 0 0 24 0 0.00 ATP5J 522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 27102058 27102058 + Silent SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001003701 exon2 c.C72T p.A24A TGAGACGGCTGAC 249 36 0.14 190 0 0 1436 267 0.19 PCNT 5116 broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 47810695 47810695 + Silent SNP G G A rs370541579 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . PCNT NM_006031 exon20 c.G3951A p.K1317K TTTGAAGGAGGAG 250 8 0.03 154 0 0 283 10 0 0.00 TRANK1 9881 broad.mit.edu 37 3 36873948 36873948 + Missense_Mutation SNP T T C rs201976066 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . TRANK1 NM_014831 exon21 c.A6994G p.R2332G TGCCTCTCCCCCT 183 7 0.04 165 0 0 398 7 0 0.00 ROBO2 6092 mdanderson.org 37 3 77666777 77666777 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 ROBO2_ENST00000487694,colon,carcinoma,-1,4 ROBO2_ENST00000487694 NM_002942 exon22 c.G3407T p.G1136V TTCGAGGCGTGGC 42 3 0.07 58 0 0 -1 4 3 0 0.00 ZBTB11 27107 mdanderson.org 37 3 101373562 101373562 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_014415 exon8 c.C2295A p.G765G ATGATAGCCTCGA 64 4 0.06 83 0 0 7 0 0.00 MUC4 4585 bcgsc.ca 37 3 195508187 195508187 + Missense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . MUC4 NM_018406 exon2 c.G10264A p.A3422T GGGTGGCGTGACC 151 8 0.05 123 3 0.0243902439 1505 3 0 0.00 MAN2B2 23324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 6599004 6599004 + Nonsense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_015274 exon8 c.C1222T p.Q408X CAGCTCCAGCAGC 79 21 0.27 84 0 0 8 0 0.00 ADH1C 126 broad.mit.edu 37 4 100265826 100265827 + RNA INS - - AACTC rs34551784 bycluster;byfrequency;by1000genomes TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . TTTTCTTAACAAG 6 4 0.67 6 0 0 0 0 HLA-H 3136 hgsc.bcm.edu 37 6 29856882 29856882 + RNA SNP C C G novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . CAGCCTCCACTCA 53 5 0.09 45 0 0 4 1 0.25 NCOA7 135112 mdanderson.org 37 6 126176191 126176191 + Missense_Mutation SNP C C G novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_181782 exon3 c.C76G p.Q26E GCCAAACAAAATG 35 3 0.09 18 0 0 1 0 0.00 MED23 9439 mdanderson.org 37 6 131913587 131913587 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_015979 exon26 c.C3430A p.P1144T CTCTTGGCACTAA 61 4 0.07 69 0 0 18 0 0.00 TAAR2 9287 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 132938975 132938975 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_001033080 exon2 c.C370A p.L124M GCATCAGGTCAAA 55 5 0.09 39 0 0 0 0 TBP 6908 hgsc.bcm.edu;mdanderson.org 37 6 170871016 170871016 + Silent SNP G G A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 TBP,NS,carcinoma,0,2 TBP NM_003194 exon3 c.G192A p.Q64Q ACAACAGCAGCAG 64 6 0.09 59 0 0 0 2 35 0 0.00 RAPGEF5 9771 ucsc.edu 37 7 22176601 22176601 + Nonsense_Mutation SNP T T A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . RAPGEF5 NM_012294 exon22 c.A1819T p.K607X GGATTTTCTAAAA 33 4 0.12 31 0 0 96 0 0 NOD1 10392 hgsc.bcm.edu;mdanderson.org 37 7 30491538 30491538 + Silent SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_006092 exon6 c.C1495A p.R499R AAGCCCGCAGGAA 85 4 0.05 69 0 0 4 0 0.00 CALN1 83698 mdanderson.org 37 7 71252821 71252821 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_031468 exon7 c.C725A p.A242D ATGAAGGCCATAG 48 3 0.06 42 0 0 4 0 0.00 CFTR 1080 broad.mit.edu 37 7 117175426 117175426 + Missense_Mutation SNP T T C novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . CFTR NM_000492 exon6 c.T704C p.L235P TTGCCCTTTTTCA 144 4 0.03 157 1 0.0063694268 171 0 0 GPR124 25960 mdanderson.org 37 8 37699257 37699257 + Missense_Mutation SNP G G A rs376732365 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_032777 exon19 c.G3401A p.C1134Y GCCCCTGCAAGCT 25 3 0.12 18 0 0 38 0 0.00 . 441420 bcgsc.ca 37 9 45376198 45376198 + RNA SNP G G A rs146422224 TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . CGGCTCGCGGACC 29 7 0.24 31 1 0.0322580645 0 0 SLC2A8 29988 mdanderson.org 37 9 130160366 130160366 + Silent SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_014580 exon3 c.C402T p.C134C GGCCTGCGGTGTT 15 3 0.20 18 0 0 22 0 0.00 SAT1 6303 bcgsc.ca;mdanderson.org 37 X 23802158 23802158 + Missense_Mutation SNP T T A novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . SAT1 . . . . AAAAAATTAGATA 89 5 0.06 48 0 0 29 19 0 0.00 ARR3 407 mdanderson.org 37 X 69501571 69501571 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_004312 exon17 c.G1122T p.E374D CGAGGAGGAGAGC 39 3 0.08 30 0 0 2 0 0.00 NOX1 27035 broad.mit.edu 37 X 100105256 100105256 + Silent SNP A A G novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . NOX1 NM_013955 exon9 c.T1017C p.P339P AGTAAAAGGATGC 117 4 0.03 68 0 0 79 2 0 0.00 HCFC1 3054 mdanderson.org 37 X 153215724 153215724 + Missense_Mutation SNP C C T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . NM_005334 exon24 c.G5974A p.G1992S CCGGGCCATAGCC 34 3 0.09 20 0 0 121 0 0.00 MAP3K14 9020 mdanderson.org 37 17 43351583 43351583 + Missense_Mutation SNP G G T novel TCGA-2G-AALY-01A-11D-A42Y-10 TCGA-2G-AALY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1d72b00-762d-4b89-bd7e-f9010bfa451a 8bc7851f-087a-4d33-a4e0-20e48169eee0 . . . . . . CTGGGAGACAGCC 39 3 0.08 38 0 0 3 0 0.00