Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	9780069	9780069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_005026	exon10	c.G1333A	p.V445I	CCCTCCGTCCCAG		116	11	0.09	137	0	0				12	2	0.17			
HTR6	3362	mdanderson.org	37	1	20005666	20005666	+	Silent	SNP	G	G	T	rs201944154		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000871	exon3	c.G1128T	p.P376P	GCCGCCGGACTCA		23	2	0.09	32	0	0				0	0				
TMEM39B	55116	mdanderson.org	37	1	32541383	32541383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_018056	exon3	c.G311T	p.W104L	CAGTGTGGTGGTA		43	3	0.07	67	0	0				30	0	0.00			
TMCO2	127391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40713810	40713810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TMCO2,NS,carcinoma,0,1	TMCO2	NM_001008740	exon1	c.C145G	p.P49A	CTTGCTCCAGCTG		129	31	0.24	109	0	0		0	1	0	0				
NFIA	4774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	61548476	61548477	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NFIA	NM_001145512	exon2	c.147_148del	p.49_50del	TCTCCGCTCTGTC		351	94	0.27	294	0	0		76		22	0	0.00			
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	86959124	86959124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CLCA1,colon,carcinoma,-2,1	CLCA1	NM_001285	exon10	c.G1522A	p.V508M	GTGATCGTGGACA		138	9	0.07	148	0	0		-2	1	0	0				
CHRNB2	1141	mdanderson.org	37	1	154544318	154544318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000748	exon5	c.T1019C	p.L340P	TCTTCCTGGAGAA		39	3	0.08	43	0	0				1	0	0.00			
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158324199	158324199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CD1E,NS,carcinoma,0,1	CD1E	NM_001185107	exon2	c.G91T	p.A31S	CTAGCAGCAGAGG		164	10	0.06	119	0	0		0	1	0	0				
SPTA1	6708	hgsc.bcm.edu	37	1	158622412	158622412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SPTA1,NS,carcinoma,+1,3	SPTA1	NM_003126	exon23	c.C3220A	p.R1074S	GTCTGCGTTCTTC		110	5	0.05	100	0	0		1	3	0	0				
ITLN1	55600	ucsc.edu	37	1	160851880	160851880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ITLN1	NM_017625	exon4	c.G272A	p.R91H	TTCCCACGCATGT		176	1	0.01	127	0	0		45		33	23	0.70			
CAPN8	388743	bcgsc.ca	37	1	223853215	223853230	+	Frame_Shift_Del	DEL	AGGACCCCTGAGTCCA	AGGACCCCTGAGTCCA	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	AGGACCCCTGAGTCCA	AGGACCCCTGAGTCCA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	CAPN8	.	.	.	.	TTAAATAGGACCC		122	6	0.05	81	0	0		30		0	0				
USP6NL	9712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	11569522	11569522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080491	exon2	c.G100A	p.E34K	CTATTTCAGCTCG		44	11	0.25	57	0	0				8	4	0.50			
EIF5AL1	143244	bcgsc.ca	37	10	81272627	81272627	+	Silent	SNP	G	G	A	rs75496770		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	EIF5AL1	NM_001099692	exon1	c.G222A	p.P74P	CTGCCCGTCAACT		94	42	0.45	145	20	0.1379310345		24		622	0	0.00			
OBFC1	79991	mdanderson.org	37	10	105651979	105651979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_024928	exon8	c.C785A	p.A262E	TGAATTGCCTTGG		44	3	0.07	58	0	0				41	0	0.00			
C10orf90	118611	mdanderson.org	37	10	128202503	128202503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	C10orf90,colon,carcinoma,0,1	C10orf90	NM_001004298	exon2	c.C28T	p.R10W	TGTCCCGTAATCC		35	3	0.09	46	0	0		0	1	0	0				
MUC6	4588	bcgsc.ca	37	11	1017519	1017519	+	Missense_Mutation	SNP	A	A	G	rs112553306	bycluster;byfrequency	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MUC6	NM_005961	exon31	c.T5282C	p.V1761A	GAGGTGACTTCAG		158	10	0.06	146	1	0.0068493151		408		169	3	0.02			
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	9096033	9096033	+	Missense_Mutation	SNP	G	G	A	rs72549241	byfrequency	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SCUBE2_ENST00000457346,NS,malignant_melanoma,+1,5	SCUBE2_ENST00000457346	NM_001170690	exon4	c.C512T	p.S171L	CCTTCCGAGCGGT		76	4	0.05	68	0	0	0.005	1	5	4	0	0.00			
CRY2	1408	mdanderson.org	37	11	45892069	45892069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_021117	exon9	c.G1598A	p.R533H	TTTCGCGCTACCG		39	3	0.08	51	0	0				50	0	0.00			
NDUFS3	4722	broad.mit.edu;mdanderson.org	37	11	47600657	47600657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NDUFS3	NM_004551	exon1	c.C14T	p.A5V	CGGCGGCGGTAGC		35	3	0.09	33	0	0		19		134	0	0.00			
FNBP4	23360	broad.mit.edu	37	11	47744606	47744606	+	Silent	SNP	A	A	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	FNBP4,colon,carcinoma,0,2	FNBP4	NM_015308	exon15	c.T2727A	p.P909P	AGGAGGAGGTGGT		47	3	0.06	51	0	0		99	2	95	0	0.00			
C11orf95	65998	mdanderson.org	37	11	63533633	63533633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001144936	exon2	c.C283A	p.R95S	GGATGCGGCTCTT		42	3	0.07	47	0	0				53	0	0.00			
.	0	broad.mit.edu	37	11	64943049	64943050	+	RNA	INS	-	-	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	CGGCTAATTTTTT		6	2	0.33	6	0	0				3	0	0.00			
KDM2A	22992	hgsc.bcm.edu	37	11	67018078	67018078	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_012308	exon17	c.A2577G	p.E859E	GGAGGAAGAGGAG		56	6	0.11	36	0	0				11	0	0.00			
APOA5	116519	mdanderson.org	37	11	116661077	116661077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_052968	exon4	c.C868A	p.Q290K	TGTCCTGGCGGAA		27	3	0.11	26	0	0				1	0	0.00			
SLC2A14	144195	broad.mit.edu	37	12	7982382	7982382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC2A14	NM_153449	exon6	c.A562G	p.I188V	TTCCAATAACTAT		647	8	0.01	308	0	0		78		20	13	0.65	rescued with RNA-seq		
SLC2A14	144195	broad.mit.edu	37	12	7982386	7982386	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC2A14	NM_153449	exon6	c.A558C	p.I186I	AATAACTATGCCC		665	8	0.01	315	0	0		78		24	17	0.71	rescued with RNA-seq		
SLC2A3	6515	broad.mit.edu;mdanderson.org	37	12	8083900	8083900	+	Silent	SNP	G	G	T	rs138143062		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SLC2A3,bladder,carcinoma,0,1	SLC2A3	NM_006931	exon4	c.C451A	p.R151R	CACCCCGCAGGGC		680	18	0.03	325	0	0		83	1	1127	17	0.02			
SLC2A3	6515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	8084046	8084046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC2A3	NM_006931	exon4	c.T305C	p.V102A	CCAGTGACAGCCA		576	20	0.03	250	0	0		83		1203	23	0.02			
GUCY2C	2984	broad.mit.edu;bcgsc.ca	37	12	14836167	14836167	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	GUCY2C	NM_004963	exon4	c.420delC	p.P140fs	GATCATGGGGTAG		145	25	0.17	82	0	0		126		1	0	0.00			
ERBB3	2065	mdanderson.org	37	12	56495768	56495768	+	Missense_Mutation	SNP	G	G	T	rs376777418	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001982	exon28	c.G3958T	p.D1320Y	GCTACAGACTCTG		38	3	0.08	45	0	0				111	0	0.00			
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66765536	66765536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_021150	exon22	c.C2794A	p.L932M	TTCTCAGGGTTAC		74	17	0.23	71	0	0				9	3	0.33			
SELPLG	6404	bcgsc.ca	37	12	109017399	109017399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SELPLG	NM_001206609	exon2	c.A733C	p.M245L	CCTCCATGGCTGT		123	11	0.09	96	0	0		138		10	0	0.00			
SELPLG	6404	bcgsc.ca	37	12	109017401	109017401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SELPLG	NM_001206609	exon2	c.C731G	p.A244G	TCCATGGCTGTGG		121	11	0.09	93	0	0		138		10	0	0.00			
MPHOSPH8	54737	bcgsc.ca	37	13	20208029	20208029	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MPHOSPH8	NM_017520	exon1	c.C141A	p.A47A	GGAGGCCTTTGGC		67	14	0.21	120	0	0		58		26	0	0.00			
PABPC3	5042	bcgsc.ca	37	13	25671311	25671315	+	Frame_Shift_Del	DEL	TATGA	TATGA	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	TATGA	TATGA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	PABPC3	NM_030979	exon1	c.975_979del	p.325_327del	AAAGGTTATGATG		122	4	0.03	185	0	0		129		12	0	0.00			
SMOC1	64093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70496970	70496970	+	Missense_Mutation	SNP	G	G	C	rs192204434	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SMOC1	NM_001034852	exon12	c.G1303C	p.V435L	CGCCTCGTCTAAG		197	54	0.27	181	3	0.0165745856		61		169	47	0.28			
.	0	bcgsc.ca	37	15	20482111	20482111	+	RNA	SNP	G	G	A	rs11629632	bycluster;byhapmap;by1000genomes	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	GTTCGCGGCCACT		7	4	0.57	37	0	0				0	0				
.	0	bcgsc.ca	37	15	22466343	22466343	+	RNA	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	CACCAGTTGGACC		254	23	0.09	598	5	0.008361204				1	0	0.00			
UNC13C	440279	mdanderson.org	37	15	54307876	54307876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080534	exon1	c.G2776A	p.A926T	GGTCCAGCAGATG		81	4	0.05	84	0	0				2	0	0.00			
RPLP1	6176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69747557	69747557	+	Missense_Mutation	SNP	G	G	T	rs200917641	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001003	exon3	c.G196T	p.G66C	GGGGCCGGTGGAC		97	31	0.32	141	0	0				14447	3576	0.25			
ATP6V0C	527	mdanderson.org	37	16	2569648	2569648	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001694	exon3	c.C370T	p.Q124X	GCCCAGCAGCCCC		34	3	0.09	36	0	0				701	0	0.00			
LOC653786	0	broad.mit.edu	37	16	22588015	22588015	+	RNA	SNP	A	A	G	rs62045993	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	CTGAGCACATCGT		32	4	0.13	41	0	0				8	2	0.25			
RABEP2	79874	mdanderson.org	37	16	28925602	28925602	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_024816	exon5	c.C849A	p.G283G	CTGGTAGCCAGGA		37	3	0.08	64	0	0				41	0	0.00			
SLC38A7	55238	mdanderson.org	37	16	58713788	58713788	+	Silent	SNP	G	G	A	rs373479233		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_018231	exon3	c.C243T	p.G81G	TGCCACGCCCCCC		25	3	0.12	32	0	0				28	0	0.00			
SMPD3	55512	mdanderson.org	37	16	68398787	68398787	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_018667	exon5	c.G1422A	p.G474G	CAGCTGCCCACAC		25	3	0.12	38	0	0				5	0	0.00			
SLC38A8	146167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84075679	84075679	+	Silent	SNP	G	G	T	rs140582456	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080442	exon1	c.C84A	p.G28G	GACAGCGCCCATC		71	24	0.34	55	0	0				2	0	0.00			
P2RX5-TAX1BP3	0	hgsc.bcm.edu	37	17	3571757	3571757	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	GACGAGGAGGAGC		108	15	0.14	76	0	0				0	0				
TP53I13	90313	mdanderson.org	37	17	27899194	27899194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_138349	exon6	c.G548T	p.R183L	GCTGGCGGCCCCC		36	3	0.08	26	0	0				289	0	0.00			
.	0	broad.mit.edu	37	17	29371989	29371990	+	RNA	INS	-	-	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	AAAAGAGAAAAAA		5	1	0.20	5	0	0				0	0				
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	40831978	40831978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_016602	exon2	c.G682C	p.A228P	GAAGCGCGTAGCA		23	6	0.26	14	0	0				6	1	0.17			
RUNDC1	146923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41141537	41141537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173079	exon3	c.G837A	p.M279I	TGAGATGTTTATC		108	30	0.28	75	0	0				24	3	0.13			
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71387578	71387578	+	Splice_Site	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001144952	exon29	c.3997+1G>A	.	GGCTTACCAAGAA		130	18	0.14	98	0	0				0	0				
SLC16A3	9123	mdanderson.org	37	17	80195738	80195738	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001206952	exon4	c.G1092A	p.A364A	GGAGGCGGTGGCC		22	2	0.09	13	0	0				307	1	0.00			
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	46474772	46474772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_005904	exon2	c.G649T	p.D217Y	GAAAATCCATCGG		128	11	0.09	149	0	0				64	5	0.08			
SMAD7	4092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	46474783	46474783	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SMAD7	NM_005904	exon2	c.G638C	p.R213T	GGGTATCTGGAGT		120	11	0.09	139	2	0.0143884892		22		70	1	0.01			
AMH	268	ucsc.edu	37	19	2249633	2249633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	AMH	NM_000479	exon1	c.G302T	p.G101V	CCTTCGGGGTCTG		7	2	0.29	15	0	0		12		56	23	0.41			
ADAMTS10	81794	mdanderson.org	37	19	8649876	8649876	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_030957	exon25	c.C3105A	p.G1035G	CGCCTGGCCCGTG		30	3	0.10	19	0	0				27	0	0.00			
PGLYRP2	114770	mdanderson.org	37	19	15582890	15582890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_052890	exon3	c.G1154A	p.R385H	CGGCAGCGGGGGT		11	2	0.18	20	0	0				5	0	0.00			
ANKLE1	126549	broad.mit.edu	37	19	17397498	17397501	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs35771129	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ANKLE1	.	.	.	.	TGTGTGTGTTTGT		11	8	0.73	11	0	0		27		22	0	0.00			
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17598309	17598309	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_198580	exon4	c.G765C	p.L255L	CGGGCTGCCCAAG		31	11	0.35	50	0	0				54	24	0.44			
FCHO1	23149	mdanderson.org	37	19	17889000	17889000	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001161358	exon18	c.G1314A	p.P438P	TGGGCCGCCCCTG		40	3	0.08	27	0	0				5	0	0.00			
RASGRP4	115727	mdanderson.org	37	19	38905583	38905583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_170604	exon9	c.C1135A	p.L379M	TGTTCAGCTTGGG		72	4	0.06	78	0	0				4	0	0.00			
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41072264	41072264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_020971	exon30	c.C6335T	p.T2112M	TGACCACGGTCAG		25	4	0.16	36	0	0				0	0				
RSPH6A	81492	mdanderson.org	37	19	46299149	46299149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_030785	exon6	c.A2132G	p.E711G	TCGCCCTCCTCCT		29	2	0.07	33	0	0				1	0	0.00			
RCN3	57333	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50045926	50045926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	RCN3	NM_020650	exon6	c.G796T	p.V266L	AGTGAGGTGGGCC		72	8	0.11	83	0	0		28		55	7	0.13			
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55698956	55698956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_002842	exon14	c.G2491A	p.G831S	TGTGGCCCACCAG		112	44	0.39	116	0	0				5	3	0.60			
GPD2	2820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	157435487	157435487	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001083112	exon14	c.T1854C	p.I618I	TGAAATTAGCCTA		52	6	0.12	77	0	0				15	4	0.27			
TTN	7273	broad.mit.edu	37	2	179449465	179449465	+	Missense_Mutation	SNP	G	G	T	rs201614524	bycluster;alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TTN_ENST00000359218,NS,carcinoma,+1,9	TTN	NM_001267550	exon310	c.C64903A	p.R21635S	CAGCACGGACCCG		144	3	0.02	178	0	0		18412	9	0	0				
ABCA12	26154	mdanderson.org	37	2	215910734	215910734	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173076	exon7	c.C699A	p.S233S	GTCACTGGATAGC		45	3	0.07	57	0	0				1	0	0.00			
UBE2F	140739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238881845	238881846	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	GA	GA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	UBE2F	NM_080678	exon2	c.95_96del	p.32_32del	TTCTGTGAGAGAC		35	14	0.40	51	0	0		11		72	0	0.00			
SLC23A2	9962	broad.mit.edu;mdanderson.org	37	20	4843482	4843482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC23A2	NM_203327	exon14	c.C1428A	p.S476R	GAGGGCGCTGAAC		35	3	0.09	64	0	0		62		15	0	0.00			
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36841586	36841586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001029864	exon14	c.T3461G	p.L1154R	GTGGCAAGCAAAT		37	17	0.46	32	0	0				31	15	0.48			
SEMG1	6406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43836447	43836447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_003007	exon2	c.G509A	p.G170E	TTCATGGACTAAG		89	6	0.07	119	0	0				0	0				
.	0	broad.mit.edu	37	21	24474481	24474482	+	RNA	INS	-	-	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	CCATCTCAAAAAA		6	3	0.50	9	0	0				0	0				
INPP5J	27124	mdanderson.org	37	22	31522467	31522467	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001002837	exon3	c.C273T	p.I91I	CATGATCGCCATA		45	3	0.07	40	0	0				8	0	0.00			
NCF4	4689	ucsc.edu	37	22	37261054	37261054	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NCF4	NM_000631	exon3	c.G211T	p.E71X	CTGGAGGAGCGCT		39	4	0.10	58	0	0		66		30	0	0.00			
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39148563	39148563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001199580	exon3	c.G71A	p.G24E	GAGCTCCCTCCGC		37	16	0.43	40	0	0				86	25	0.29			
TTLL12	23170	ucsc.edu	37	22	43579063	43579063	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	TTLL12	NM_015140	exon2	c.G270A	p.Q90Q	GTTGGGCTGCTGC		91	5	0.05	102	0	0		50		91	10	0.11			
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44762585	44762585	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001134440	exon4	c.A276G	p.E92E	CAAAGAAGCACCC		106	11	0.10	116	0	0				8	5	0.63			
LOC440970	0	broad.mit.edu	37	3	84741222	84741222	+	RNA	DEL	A	A	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	TGATCCAAAAGGC		6	2	0.33	7	0	0				0	0				
NLGN1	22871	hgsc.bcm.edu	37	3	173525625	173525627	+	Splice_Site	DEL	AAG	AAG	-	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	AAG	AAG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NLGN1	.	.	.	.	CTCGGTAAGAAGA		123	19	0.15	81	0	0		209		0	0				
MUC4	4585	broad.mit.edu	37	3	195509143	195509143	+	Missense_Mutation	SNP	G	G	A	rs200380706		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MUC4	NM_018406	exon2	c.C9308T	p.T3103M	AGAGGCGTGGTGT		175	4	0.02	95	1	0.0105263158		1505		0	0				
HOPX	84525	mdanderson.org	37	4	57516927	57516927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001145460	exon4	c.C250A	p.Q84K	CTCTTTGGGGGCT		51	4	0.08	65	0	0				0	0				
ADH1B	125	broad.mit.edu	37	4	100235056	100235056	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ADH1B	NM_000668	exon6	c.C750T	p.P250P	CTGAATGGGTTTC		199	17	0.09	253	0	0		68		8	2	0.25			
CTNND2	1501	mdanderson.org	37	5	11346670	11346670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001332	exon9	c.C1442T	p.A481V	GCGGCGGCATTCT		29	3	0.10	39	0	0				9	0	0.00			
DAB2	1601	broad.mit.edu	37	5	39390003	39390003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	DAB2	NM_001343	exon6	c.T494C	p.L165P	TGAAAAAGGTCTT		414	7	0.02	522	0	0		124		27	0	0.00			
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90016770	90016770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_032119	exon45	c.C9642G	p.I3214M	AGACATCGAAGAA		78	38	0.49	119	0	0				1	1	1.00			
APC	324	hgsc.bcm.edu;broad.mit.edu	37	5	112179374	112179374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001127510	exon17	c.A8083G	p.K2695E	AACATTAAAGATT		98	4	0.04	100	0	0				42	4	0.10			
ZNF300	91975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150276491	150276491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001172831	exon7	c.A358T	p.T120S	AAACTGTCCCCAA		105	40	0.38	108	0	0				14	6	0.43			
GABRP	2568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170235654	170235654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_014211	exon8	c.T730C	p.Y244H	GTTCTGTATTTCA		123	44	0.36	136	0	0				0	0				
CLTB	1212	mdanderson.org	37	5	175823488	175823488	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CLTB,NS,carcinoma,0,1	CLTB	NM_007097	exon5	c.C510A	p.I170I	GTAGCCGATGATA		38	3	0.08	39	0	0		0	1	11	0	0.00			
MGAT4B	11282	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179228562	179228562	+	Missense_Mutation	SNP	C	C	T	rs372861672	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MGAT4B	NM_054013	exon2	c.G461A	p.R154H	CCGGTGCGGCCCT		37	4	0.11	50	0	0		41		174	0	0.00			
HFE	3077	broad.mit.edu	37	6	26091799	26091799	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	HFE	NM_139006	exon3	c.G598C	p.G200R	GGGAGAGGTGTTT		298	6	0.02	336	1	0.0029761905		37		7	0	0.00			
MUC21	394263	hgsc.bcm.edu	37	6	30954870	30954870	+	Silent	SNP	T	T	C	rs9262377	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	MUC21,rectum,carcinoma,0,1	MUC21	NM_001010909	exon2	c.T918C	p.S306S	GTCCAGTACGACC		47	2	0.04	40	1	0.025		0	1	0	0				
HLA-DRB6	0	broad.mit.edu	37	6	32521955	32521956	+	RNA	INS	-	-	T	rs141382595	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	AAACTCATTCAAA		16	9	0.56	9	0	0				0	0				
MB21D1	115004	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74135079	74135079	+	Silent	SNP	A	A	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MB21D1	NM_138441	exon5	c.T1440G	p.L480L	ATTCTCAAGTTTT		81	6	0.07	99	1	0.0101010101		33		1	0	0.00			
LAMA2	3908	mdanderson.org	37	6	129637314	129637314	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001079823	exon27	c.C4056T	p.S1352S	ACAAAGCAGGTAA		28	3	0.11	44	0	0				9	0	0.00			
GPR146	115330	mdanderson.org	37	7	1097842	1097842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_138445	exon1	c.G691A	p.A231T	CCCTCGGCACACA		13	2	0.15	12	0	0				8	0	0.00			
PHKG1	5260	mdanderson.org	37	7	56155460	56155460	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_006213	exon3	c.C93T	p.S31S	CACACTGCTAACG		25	3	0.12	26	0	0				2	0	0.00			
TRRAP	8295	mdanderson.org	37	7	98553773	98553773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001244580	exon41	c.A5921G	p.Y1974C	AGGTGTACTACCC		20	2	0.10	38	0	0				12	0	0.00			
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30700548	30700548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_031271	exon1	c.G5986A	p.A1996T	ATTCAGCCTGATC		148	36	0.24	126	0	0				2	0	0.00			
ZFP41	286128	mdanderson.org	37	8	144332576	144332576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173832	exon2	c.G563A	p.R188H	TCATCCGCCATCA		20	3	0.15	24	0	0				30	0	0.00			
TTC39B	158219	mdanderson.org	37	9	15192619	15192619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TTC39B_ENST00000512701,NS,carcinoma,0,2	TTC39B_ENST00000512701	NM_152574	exon9	c.G899T	p.G300V	TTGACACCCCCTT		109	5	0.05	102	0	0		0	2	6	1	0.17			
MLLT3	4300	broad.mit.edu	37	9	20414311	20414313	+	In_Frame_Del	DEL	CTG	CTG	-	rs373338988	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	CTG	CTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	MLLT3,caecum,carcinoma,+1,1	MLLT3	NM_004529	exon5	c.531_533del	p.177_178del	CTGCTACTGCTGC		96	7	0.07	83	0	0		125	1	20	0	0.00			
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33307242	33307242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_147134	exon5	c.G1321C	p.G441R	AGCTGTGGTGAGG		76	6	0.08	93	0	0				33	5	0.15			
FANCG	2189	mdanderson.org	37	9	35074208	35074208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_004629	exon14	c.T1766C	p.L589P	AGGGGGAGAGACC		51	3	0.06	61	1	0.0163934426				256	0	0.00			
.	392335	bcgsc.ca	37	9	66513491	66513491	+	RNA	SNP	A	A	T	rs199925660		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	GAATACAGCAAAG		57	21	0.37	54	13	0.2407407407				0	0				
ANKRD20A1	84210	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	67968313	67968313	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ANKRD20A1	NM_032250	exon15	c.G1872A	p.V624V	AAGTGTGAAAACA		269	60	0.22	329	0	0		16		0	0				
LOC440173	157956	bcgsc.ca	37	9	89626712	89626712	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	.	.	.	.	CCAACCGATCCCA		20	4	0.20	29	0	0				5	0	0.00			
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113169776	113169776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_153366	exon38	c.G8104A	p.D2702N	TTCCATCTTCCTG		54	18	0.33	76	0	0				7	2	0.29			
ENG	2022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130578304	130578304	+	Silent	SNP	G	G	A	rs370943570		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001114753	exon14	c.C1770T	p.P590P	CACGGCGGGCAGG		70	27	0.39	95	0	0				153	30	0.20			
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132631164	132631164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001008563	exon12	c.C1159T	p.R387C	CACCTACGCAGCT		47	15	0.32	45	0	0				23	5	0.22			
NUDT10	170685	mdanderson.org	37	X	51075901	51075901	+	Silent	SNP	G	G	A	rs2801627	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_153183	exon2	c.G84A	p.E28E	GAGCGAGCGCGAG		264	20	0.08	194	3	0.0154639175				26	0	0.00			
SATL1	340562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	84349179	84349179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001012980	exon4	c.A1831C	p.K611Q	GTACCTTGCCAGT		324	21	0.06	219	0	0				0	0				
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123184103	123184103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001042749	exon11	c.G961T	p.D321Y	TATAGTGATGCCT		57	18	0.32	38	0	0				19	6	0.32			
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135763031	135763031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_004840	exon15	c.C1563G	p.N521K	CACTGTGTTACCT		113	16	0.14	75	0	0				5	0	0.00			
ZNF185	7739	hgsc.bcm.edu;mdanderson.org	37	X	152110348	152110348	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001178115	exon1	c.C96A	p.P32P	TGGGCCCGAGGAG		58	5	0.09	28	0	0				0	0				
ZNF275	10838	mdanderson.org	37	X	152612977	152612977	+	Silent	SNP	C	C	T	rs372792162		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080485	exon4	c.C834T	p.N278N	GGTCAACGGGCTG		42	3	0.07	20	0	0				8	0	0.00			
ABCD1	215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153001577	153001577	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000033	exon3	c.G1093C	p.V365L	GAGGCCGTGAAGA		150	16	0.11	67	0	0				62	4	0.06