Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PLEKHG5 57449 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 6537598 6537598 + Missense_Mutation SNP G G T rs140687324 bycluster;byfrequency;by1000genomes TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . PLEKHG5 NM_001265592 exon3 c.C271A p.P91T GTGGGGGAAGGTC 35 5 0.14 53 0 0 66 6 1 0.17 SLC2A1 6513 mdanderson.org 37 1 43395320 43395320 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_006516 exon6 c.C811T p.P271S GGATGGGCTGGCG 43 3 0.07 56 0 0 1618 0 0.00 SZT2 23334 mdanderson.org 37 1 43855647 43855647 + Nonsense_Mutation SNP C C A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_015284 exon1 c.C8A p.S3X TGGCCTCGGAGCG 24 3 0.13 15 0 0 1 0 0.00 MTF2 22823 broad.mit.edu;ucsc.edu 37 1 93580262 93580262 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . MTF2 NM_001164392 exon4 c.G304T p.E102X AGTGGGGAAATGG 202 58 0.29 177 1 0.0056497175 51 27 7 0.26 NUDT17 200035 hgsc.bcm.edu 37 1 145586679 145586679 + Silent SNP C C A rs150364859 bycluster;byfrequency TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad NUDT17,NS,carcinoma,-1,1 NUDT17 NM_001012758 exon8 c.G897T p.P299P TTTACACGGTGGG 70 5 0.07 118 2 0.0169491525 -1 1 4 0 0.00 RASAL2 9462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 178063808 178063808 + Nonsense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_170692 exon1 c.C181T p.Q61X CAGCAACAGAGCT 219 52 0.24 212 0 0 1 1 1.00 RGSL1 353299 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 182443575 182443575 + Silent SNP G G C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . RGSL1 NM_001137669 exon6 c.G1329C p.P443P TGGTCCGTGCTTA 233 73 0.31 286 1 0.0034965035 111 0 0 CENPF 1063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 214788200 214788200 + Missense_Mutation SNP C C G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_016343 exon3 c.C188G p.T63R AGGGTACAAACCT 271 68 0.25 302 0 0 2 0 0.00 ACTA2 59 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 90697898 90697898 + Missense_Mutation SNP C C G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001141945 exon8 c.G910C p.G304R TGGTGCCCCCTGA 145 51 0.35 232 0 0 55 8 0.15 CYP2C19 1557 hgsc.bcm.edu 37 10 96580387 96580387 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad CYP2C19,NS,carcinoma,+1,2 CYP2C19 NM_000769 exon6 c.G954T p.E318D CCCAGAGGTCACA 45 3 0.07 73 0 0 1 2 0 0 TMEM180 79847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 104229774 104229774 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_024789 exon4 c.C193T p.L65F AACAGCCTCAATG 66 19 0.29 123 0 0 4 1 0.25 PCGF6 84108 broad.mit.edu;mdanderson.org 37 10 105110539 105110539 + Silent SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . PCGF6 NM_001011663 exon1 c.G285A p.E95E CTCCTCCTCTTCT 29 3 0.10 53 0 0 23 12 0 0.00 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 134713076 134713076 + Nonsense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001200049 exon23 c.C3019T p.R1007X CCAGTCGCAGCTG 64 12 0.19 135 0 0 0 0 MUC2 4583 mdanderson.org 37 11 1093298 1093298 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_002457 exon30 c.C5117T p.T1706M CCACTACGGTGAC 20 2 0.10 32 0 0 0 0 MUC5B 727897 broad.mit.edu 37 11 1268037 1268037 + Silent SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . MUC5B NM_002458 exon31 c.G9927A p.P3309P AGTGCCGACTACC 187 4 0.02 319 1 0.0031347962 473 0 0 CARS 833 mdanderson.org 37 11 3060461 3060461 + Missense_Mutation SNP G G T rs200598975 bycluster;by1000genomes;alternate_allele TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001014437 exon6 c.C614A p.A205E TGTGCCGCTTCAG 43 3 0.07 92 0 0 30 0 0.00 OR51L1 119682 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5020846 5020846 + Missense_Mutation SNP G G T rs199789707 bycluster;alternate_allele TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . OR51L1 NM_001004755 exon1 c.G634T p.D212Y GGTGTGGATTCAA 120 50 0.42 213 1 0.0046948357 60 0 0 PC 5091 mdanderson.org 37 11 66616790 66616790 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_000920 exon21 c.G3199A p.D1067N TCAGGTCGCTCAC 46 3 0.07 75 0 0 24 0 0.00 TPCN2 219931 mdanderson.org 37 11 68830459 68830459 + Splice_Site SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_139075 exon6 c.653+1G>T . GGCCAGGTGGGCT 42 3 0.07 87 0 0 3 0 0.00 IGSF9B 22997 mdanderson.org 37 11 133807352 133807352 + Silent SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_014987 exon5 c.C598A p.R200R CCTCCCGACTGAC 36 3 0.08 95 0 0 1 0 0.00 PRMT8 56341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 3701426 3701426 + Missense_Mutation SNP C C A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad PRMT8_ENST00000452611,NS,carcinoma,-2,2 PRMT8_ENST00000452611 NM_019854 exon9 c.C1009A p.Q337K TGGAAGCAGACCG 110 17 0.15 57 0 0 -2 2 1 1 1.00 FAM186A 121006 broad.mit.edu 37 12 50747102 50747102 + Silent SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad FAM186A_ENST00000327337,NS,carcinoma,0,3 FAM186A NM_001145475 exon4 c.T3513C p.L1171L AGGGGTAAGAGGG 171 5 0.03 131 3 0.0229007634 181 3 0 0 CALCOCO1 57658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54108460 54108460 + Silent SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_020898 exon11 c.T1404C p.S468S CCGCTTACTTTCT 88 19 0.22 78 0 0 42 11 0.26 SARNP 84324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56154395 56154395 + Silent SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_033082 exon10 c.G531A p.R177R CTCCTTCCTCTTT 166 38 0.23 133 0 0 863 223 0.26 . 0 bcgsc.ca 37 12 58361026 58361026 + RNA SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . AAAAAAGAAAAAA 48 6 0.13 35 0 0 0 0 . 0 bcgsc.ca 37 12 68868222 68868222 + RNA SNP A A C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . TGAAATAGATGCT 95 11 0.12 70 0 0 0 0 APAF1 317 broad.mit.edu 37 12 99052954 99052954 + Silent SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . APAF1 NM_181868 exon5 c.A543G p.G181G AGGGGGAGTGCAT 149 4 0.03 162 0 0 111 0 0 POLR3B 55703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 106857290 106857290 + Missense_Mutation SNP G G C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_018082 exon23 c.G2605C p.V869L GAAAAAGTGATGA 218 47 0.22 191 0 0 17 3 0.18 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117657988 117657988 + Silent SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001204218 exon28 c.T4164C p.C1388C GTCCCCACAGACG 64 19 0.30 60 0 0 0 0 RPLP0 6175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 120637146 120637146 + Missense_Mutation SNP C C G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_053275 exon3 c.G197C p.R66P TGCCCTCGGATGG 134 27 0.20 98 0 0 5417 859 0.16 NALCN-AS1 0 broad.mit.edu 37 13 101408785 101408785 + RNA DEL G G - novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . GTCCCTGGTTAGA 6 2 0.33 5 0 0 0 0 SPTB 6710 hgsc.bcm.edu 37 14 65242042 65242042 + Missense_Mutation SNP G G A rs377634587 TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad SPTB_ENST00000542895,colon,carcinoma,+1,3 SPTB_ENST00000542895 NM_001024858 exon22 c.C4643T p.A1548V ATCTCCGCCGCCT 97 4 0.04 82 0 0 1 3 3 0 0.00 ZFYVE26 23503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 68282599 68282599 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_015346 exon2 c.G82A p.E28K CCCATTCTCCCCT 127 40 0.31 101 0 0 0 0 SPTBN5 51332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42143126 42143126 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_016642 exon66 c.G10742A p.G3581E TCTGCCCCACTGG 101 38 0.38 158 0 0 3 0 0.00 STRA6 64220 broad.mit.edu 37 15 74476251 74476252 + Frame_Shift_Ins INS - - T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . STRA6 NM_001199042 exon14 c.1363_1364insA p.A455fs ATATGGCTTGGCG 66 10 0.15 94 0 0 66 29 0 0.00 STRA6 64220 mdanderson.org 37 15 74477381 74477381 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001199042 exon13 c.C1223A p.A408D ACCAAGGCTGAGA 53 3 0.06 73 0 0 40 0 0.00 CSK 1445 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75094846 75094846 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . CSK NM_001127190 exon14 c.C1345T p.H449Y GAGCTGCACCTGT 55 22 0.40 87 1 0.0114942529 43 233 99 0.42 MAPK8IP3 23162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 1818243 1818243 + Silent SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad MAPK8IP3_ENST00000250894,colon,carcinoma,+2,2 MAPK8IP3_ENST00000250894 NM_015133 exon30 c.G3603A p.G1201G TCCCGGGGGCATC 53 6 0.11 43 0 0 2 2 49 12 0.24 NLRC3 197358 mdanderson.org 37 16 3614976 3614976 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_178844 exon4 c.C62A p.P21Q TCGGCTGGGGAGC 48 4 0.08 61 0 0 0 0 NUP93 9688 mdanderson.org 37 16 56855496 56855496 + Silent SNP C C T rs2118017 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_014669 exon7 c.C645T p.L215L AGAGCTCGATGAT 107 3 0.03 115 0 0 116 0 0.00 WRAP53 55135 mdanderson.org 37 17 7606661 7606661 + Silent SNP T T C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001143991 exon11 c.T1504C p.L502L CTTCCCTTGCTCT 58 3 0.05 43 0 0 239 1 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 229 12 0.05 268 17 0.0634328358 35 18 0.51 C17orf76-AS1 125144 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 16342606 16342606 + RNA SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . GCTGCCGTGGCTG 133 21 0.16 153 0 0 11 0 0.00 KRTAP4-9 100132386 broad.mit.edu 37 17 39262096 39262096 + Silent SNP C C T rs76327324 byfrequency TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . KRTAP4-9 NM_001146041 exon1 c.C456T p.P152P CCGCCCCAGCTGC 53 5 0.09 46 1 0.0217391304 110 0 0 KRT38 8687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 39594811 39594811 + Missense_Mutation SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad KRT38,mouth,carcinoma,+1,1 KRT38 NM_006771 exon5 c.T952C p.S318P TCTCCGACTGGCA 124 34 0.27 138 0 0 1 1 0 0 KRT9 3857 broad.mit.edu 37 17 39723690 39723690 + Silent SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad KRT9,NS,carcinoma,0,1 KRT9 NM_000226 exon7 c.G1707A p.G569G GCCACCCCCACTT 274 6 0.02 320 1 0.003125 78 1 0 0 JUP 3728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39912437 39912437 + Silent SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_021991 exon13 c.C2076T p.P692P TCCATAGGGCTCA 93 31 0.33 105 0 0 260 52 0.20 TGIF1 7050 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 3452011 3452011 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_170695 exon1 c.G34A p.V12M GCCGGGGTGGGCT 79 39 0.49 113 0 0 4 3 0.75 ADNP2 22850 mdanderson.org 37 18 77875467 77875467 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_014913 exon2 c.G42T p.K14N CAGAAAGGTGCGA 50 3 0.06 77 0 0 2 0 0.00 FSD1 79187 mdanderson.org 37 19 4307981 4307981 + Splice_Site SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_024333 exon4 c.345+1G>T . CCTCAGGTGGGTG 43 3 0.07 63 0 0 1 0 0.00 TIMM44 10469 broad.mit.edu 37 19 7997577 7997577 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . TIMM44 NM_006351 exon9 c.C922A p.P308T AGGCCGGGTCCAC 146 5 0.03 212 0 0 47 273 0 0.00 SIN3B 23309 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 16973303 16973303 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . SIN3B NM_015260 exon9 c.G1199T p.S400I GATCCAGCTACCG 43 4 0.09 73 0 0 90 14 0 0.00 MYO9B 4650 mdanderson.org 37 19 17323115 17323115 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_004145 exon40 c.G6470T p.G2157V CCAATGGCTGAGA 15 2 0.13 17 0 0 71 0 0.00 CRTC1 23373 mdanderson.org 37 19 18888142 18888142 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001098482 exon15 c.G1903T p.V635F GACATGGTTCTGG 24 3 0.13 27 0 0 45 0 0.00 SIGLEC11 114132 mdanderson.org 37 19 50453375 50453375 + Missense_Mutation SNP T T C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_052884 exon11 c.A1949G p.Q650R AGGCCCTGGAAGC 55 3 0.05 87 0 0 4 0 0.00 FBXO41 150726 mdanderson.org 37 2 73493772 73493772 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001080410 exon2 c.C944T p.A315V CGCGCCGCCGTCT 35 3 0.09 34 0 0 0 0 LRRTM4 80059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 77746912 77746912 + Missense_Mutation SNP G G C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad LRRTM4_ENST00000409911,NS,carcinoma,0,10 LRRTM4_ENST00000409911 NM_024993 exon3 c.C83G p.T28R GCACCCGTGAGCA 141 38 0.27 184 0 0 0 10 0 0 IL18RAP 8807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 103061722 103061722 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad IL18RAP,NS,carcinoma,0,2 IL18RAP NM_003853 exon9 c.C994T p.R332C GATCTTCGCAGGA 118 27 0.23 165 0 0 0 2 1 0 0.00 MALL 7851 broad.mit.edu 37 2 110849314 110849314 + Missense_Mutation SNP C C T rs141817647 bycluster;byfrequency TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . MALL NM_005434 exon2 c.G139A p.A47T GGGTGGCGGCTAC 144 5 0.03 131 0 0 14 2 0 0.00 PSD4 23550 mdanderson.org 37 2 113956425 113956425 + Silent SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_012455 exon15 c.G2733T p.R911R CGTGCGGCCCATC 13 2 0.15 8 0 0 2 0 0.00 SCG2 7857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 224463779 224463779 + Silent SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_003469 exon2 c.C222T p.S74S TGGGCTGCTTTCT 218 40 0.18 216 0 0 3 1 0.33 PAX1 5075 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 20 21689976 21689976 + Silent SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_006192 exon4 c.G1176T p.P392P CCCGCCGTGGCCG 14 7 0.50 16 0 0 0 0 CD93 22918 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 23066500 23066500 + Silent SNP C C A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_012072 exon1 c.G330T p.P110P CTTCAGCGGCAGA 58 29 0.50 99 0 0 0 0 PIGU 128869 mdanderson.org 37 20 33203925 33203925 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_080476 exon7 c.C548A p.A183D AAAATAGCACTGA 47 3 0.06 60 0 0 65 0 0.00 LCA5L 150082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 40792705 40792705 + Missense_Mutation SNP C C T rs370952139 TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_152505 exon6 c.G902A p.R301Q GTCTTCCGAGTCT 142 28 0.20 129 0 0 0 0 MGAT3 4248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 39884487 39884487 + Missense_Mutation SNP A A T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_002409 exon2 c.A1135T p.I379F GACGGCATCCGCC 39 15 0.38 65 0 0 4 0 0.00 SEMA5B 54437 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 122645325 122645325 + Silent SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad SEMA5B_ENST00000451055,NS,malignant_melanoma,-2,3 SEMA5B_ENST00000451055 NM_001256347 exon9 c.C1212T p.G404G GACCTCGCCCGGG 125 34 0.27 133 0 0 -2 3 5 3 0.60 GSX2 170825 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 54968011 54968021 + Frame_Shift_Del DEL GCACTACGCGC GCACTACGCGC - novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 GCACTACGCGC GCACTACGCGC Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_133267 exon2 c.836_846del p.279_282del CCAGGTGCACTAC 105 30 0.29 202 0 0 0 0 CDK7 1022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 68530860 68530860 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001799 exon1 c.G58A p.E20K CTTGGGGAGGGAC 127 47 0.37 198 0 0 72 31 0.43 BDP1 55814 broad.mit.edu 37 5 70806755 70806755 + Missense_Mutation SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . BDP1 NM_018429 exon17 c.A3836G p.E1279G AAATGGAGGCAGA 109 4 0.04 143 0 0 204 0 0 TXNDC15 79770 mdanderson.org 37 5 134223555 134223555 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_024715 exon2 c.G274T p.V92L CACATGGTGATGC 126 5 0.04 235 0 0 22 0 0.00 PCDHGB7 56099 mdanderson.org 37 5 140799086 140799086 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_032101 exon1 c.G1660T p.D554Y GTGGGCGACCGTA 53 3 0.06 75 0 0 2 0 0.00 ARAP3 64411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 141059697 141059697 + Silent SNP G G A rs200318347 byfrequency TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_022481 exon2 c.C357T p.A119A CCCGAGGGCTGGG 39 18 0.46 56 0 0 0.005 15 8 0.53 CDX1 1044 mdanderson.org 37 5 149546520 149546520 + Silent SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001804 exon1 c.G81A p.P27P GGGCCCGCAAGCC 19 3 0.16 17 0 0 8 0 0.00 RBM22 55696 mdanderson.org 37 5 150075147 150075147 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_018047 exon7 c.C667A p.L223M GGTCCAGCCGAGG 89 4 0.04 138 0 0 49 0 0.00 EBF1 1879 mdanderson.org 37 5 158524093 158524093 + Silent SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_024007 exon2 c.C180A p.S60S CAGATTGGAAGGC 50 3 0.06 71 0 0 1 0 0.00 ZFP2 80108 broad.mit.edu 37 5 178358837 178358837 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . ZFP2 NM_030613 exon5 c.G523T p.V175F CTTACTGTCCATC 61 3 0.05 82 0 0 70 0 0 PBX2 5089 hgsc.bcm.edu;broad.mit.edu 37 6 32155509 32155509 + Missense_Mutation SNP T T A rs202223627 TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad PBX2,NS,carcinoma,0,4 PBX2 NM_002586 exon5 c.A785T p.Y262F TAGAAATACTCAT 120 7 0.06 121 2 0.0165289256 0.001 0 4 46 0 0.00 FTSJD2 23070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 37446211 37446211 + Missense_Mutation SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_015050 exon22 c.C2180T p.S727F AGGGCTCCAGTGG 118 39 0.33 159 0 0 78 22 0.28 SLC25A51P1 442229 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 66498776 66498776 + RNA SNP C C T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . CCAACACTTATCA 75 23 0.31 100 0 0 0 0 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90486377 90486377 + Missense_Mutation SNP G G C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_014611 exon12 c.C1763G p.T588R TTGCTTGTATGCT 94 30 0.32 80 0 0 2 0 0.00 TIAM2 26230 mdanderson.org 37 6 155450817 155450817 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_012454 exon3 c.G460T p.E154X CCGGGCGAAGACC 42 3 0.07 73 0 0 0 0 C6orf123 26238 hgsc.bcm.edu 37 6 168191838 168191838 + RNA SNP C C G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . CATCAGCCCATCA 19 7 0.37 27 0 0 0 0 GRB10 2887 broad.mit.edu;bcgsc.ca 37 7 50680448 50680454 + Frame_Shift_Del DEL CTGAACG CTGAACG - novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 CTGAACG CTGAACG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . GRB10 NM_005311 exon10 c.1178_1184del p.393_395del AGGAGTCTGAACG 99 9 0.09 104 0 0 155 40 0 0.00 . 0 bcgsc.ca 37 7 64030014 64030014 + RNA SNP T T G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . TCCATCTGCACCT 61 11 0.18 61 0 0 0 0 FGL2 10875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 76825646 76825646 + Missense_Mutation SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_006682 exon2 c.T1270C p.S424P TGAAGGAGGACTT 115 32 0.28 108 0 0 17 0 0.00 PPP1R9A 55607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 94539755 94539755 + Silent SNP T T C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_017650 exon2 c.T330C p.D110D AACAGATGGCTCA 207 100 0.48 219 0 0 1 1 1.00 FEZF1 389549 broad.mit.edu;ucsc.edu 37 7 121944000 121944000 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . FEZF1 NM_001024613 exon1 c.C492A p.N164K ACCTCGGTTCAGG 86 12 0.14 74 1 0.0135135135 60 0 0 LRGUK 136332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 133812184 133812184 + Nonsense_Mutation SNP A A T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad LRGUK,NS,carcinoma,-1,1 LRGUK NM_144648 exon1 c.A64T p.R22X TTGGGCAGATCCC 199 30 0.15 131 0 0 -1 1 2 0 0.00 ZNF398 0 broad.mit.edu 37 7 148876752 148876752 + Silent SNP T T G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . ZNF398 NM_170686 exon6 c.T1788G p.G596G TGGGGGTGATAGT 109 14 0.13 59 9 0.1525423729 54 88 1 0.01 ZBTB10 65986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 81399795 81399795 + Missense_Mutation SNP C C G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_023929 exon1 c.C750G p.F250L CTCCTTCCAGACC 89 20 0.22 81 0 0 10 2 0.20 ZNF706 51123 mdanderson.org 37 8 102213875 102213875 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001042510 exon3 c.C95T p.A32V TTGGCAGCAGCCT 78 4 0.05 84 0 0 203 0 0.00 COL14A1 7373 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 8 121215961 121215961 + Silent SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_021110 exon9 c.G891T p.A297A AAACGCGGATGTG 68 4 0.06 70 0 0 0 0 LOC100132077 0 broad.mit.edu 37 9 97108767 97108768 + RNA INS - - T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . TTACAAGTTTTTT 10 3 0.30 23 0 0 7 0 0.00 C9orf3 84909 broad.mit.edu 37 9 97535328 97535328 + Missense_Mutation SNP T T C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . C9orf3 NM_001193331 exon3 c.T842C p.L281P GGGCCCTTTTTCC 101 3 0.03 176 0 0 100 3 0 0.00 POMT1 10585 mdanderson.org 37 9 134382868 134382868 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_001136113 exon5 c.G394A p.A132T CATTGTGCCGCCA 38 3 0.08 63 0 0 8 0 0.00 SNAPC4 6621 hgsc.bcm.edu;mdanderson.org 37 9 139277986 139277986 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_003086 exon15 c.C1635A p.D545E TGGCTCGTCCTCC 60 4 0.07 81 0 0 25 0 0.00 ANAPC2 29882 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 140076172 140076172 + Missense_Mutation SNP G G A novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . ANAPC2 NM_013366 exon7 c.C1429T p.P477S CCTCTGGCTCGCC 23 12 0.52 42 1 0.0238095238 57 41 21 0.51 FANCB 2187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 14868779 14868779 + Silent SNP A A G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_152633 exon6 c.T1344C p.P448P ACAAAGAGGAACA 233 79 0.34 140 0 0 5 1 0.20 PORCN 64840 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48372918 48372918 + Missense_Mutation SNP T T G novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . PORCN NM_203475 exon9 c.T851G p.L284R GGGACCTGACGGT 219 55 0.25 114 1 0.0087719298 61 25 6 0.24 PRICKLE3 4007 hgsc.bcm.edu 37 X 49033372 49033372 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_006150 exon8 c.C1135A p.R379S TGCGGCGGCTCGG 99 4 0.04 66 0 0 16 0 0.00 FATE1 89885 broad.mit.edu 37 X 150891213 150891213 + Missense_Mutation SNP G G T novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . FATE1 NM_033085 exon5 c.G534T p.W178C CCTGTGGCTGTGG 212 9 0.04 167 2 0.0119760479 30 4 0 0.00 IL9R 3581 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 X 155239821 155239821 + Missense_Mutation SNP G G A rs140822242 bycluster;byfrequency TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . NM_002186 exon9 c.G1313A p.S438N GCAGCAGCAACAA 161 8 0.05 300 0 0 0.01 2 0 0.00 INPP5D 3635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 233925276 233925276 + Missense_Mutation SNP G G C novel TCGA-2G-AALP-01A-12D-A42Y-10 TCGA-2G-AALP-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fb62bace-995f-4da1-8ebb-ad5c18455253 718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad . . . . . . TTCCTCGTGCGTG 207 47 0.23 260 0 0 0 0