Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV C1orf170 84808 bcgsc.ca 37 1 915325 915325 + Missense_Mutation SNP A A G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . C1orf170 . . . . GCAGGTATAGACA 63 8 0.13 82 1 0.012195122 5 0 0 MST1L 0 broad.mit.edu;bcgsc.ca 37 1 17084730 17084730 + RNA DEL G G - novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . ACTGCCGGGCAGT 144 10 0.07 175 0 0 3 0 0.00 LYPLA2 11313 mdanderson.org 37 1 24120782 24120782 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_007260 exon8 c.C438T p.S146S GTTGAGCTGCTGG 30 3 0.10 31 0 0 216 0 0.00 TACSTD2 4070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 59042191 59042191 + Missense_Mutation SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_002353 exon1 c.C638T p.A213V CCGGCGGCCTTCT 126 32 0.25 78 0 0 10 1 0.10 LOC645166 645166 ucsc.edu 37 1 148933289 148933289 + Splice_Site SNP A A G rs9729175 bycluster;byfrequency;by2hit2allele TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 A A Unknown Untested Somatic WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NR_027355 exon3 c.236-2A>G . GCCCGCAGGATAT 52 14 0.27 61 4 0.0655737705 0 0 CHRNB2 1141 mdanderson.org 37 1 154544408 154544408 + Missense_Mutation SNP G G T rs200483865 alternate_allele TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_000748 exon5 c.G1109T p.R370L GTGAGCGCGAGGG 15 3 0.20 16 0 0 0 0 ATP1A2 477 mdanderson.org 37 1 160109764 160109764 + Silent SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 ATP1A2,NS,carcinoma,+2,3 ATP1A2 NM_000702 exon22 c.G3024T p.R1008R GCGGCGGTATCCT 49 3 0.06 55 2 0.0363636364 2 3 3 0 0.00 MAEL 84944 mdanderson.org 37 1 166961963 166961963 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_032858 exon4 c.C366T p.S122S TTTTAGCCATGGC 42 3 0.07 61 0 0 3 0 0.00 NPL 80896 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 182798766 182798766 + Missense_Mutation SNP C C A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . NPL NM_001200056 exon13 c.C807A p.N269K AAAGAACCAAAGG 376 13 0.03 343 1 0.0029154519 55 16 0 0.00 CRB1 23418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197390687 197390687 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001257966 exon6 c.G1729T p.A577S GCAGAGGCTGTGA 87 13 0.15 86 0 0 0 0 NEK7 140609 mdanderson.org 37 1 198288648 198288648 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_133494 exon10 c.G905T p.S302I CAAGCAGCTAAAC 41 3 0.07 40 0 0 5 0 0.00 KLHDC8A 55220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205307669 205307669 + Missense_Mutation SNP A A C novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_018203 exon5 c.T813G p.F271L AGCCACAAAATCT 84 27 0.32 82 0 0 4 0 0.00 WNT9A 7483 mdanderson.org 37 1 228112986 228112986 + Silent SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_003395 exon2 c.C330T p.Y110Y GGCCCGGTAGCGG 35 3 0.09 37 0 0 9 0 0.00 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235904732 235904732 + Missense_Mutation SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_000081 exon31 c.C8348T p.P2783L AGGGATGGGCTGA 94 30 0.32 90 0 0 0 0 . 0 bcgsc.ca 37 10 69510569 69510586 + RNA DEL AAATATAAACCAGTGACT AAATATAAACCAGTGACT - novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 AAATATAAACCAGTGACT AAATATAAACCAGTGACT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . GGACTGAAATATA 97 30 0.31 96 0 0 0 0 ANKRD2 26287 mdanderson.org 37 10 99337614 99337614 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 ANKRD2,NS,carcinoma,-1,1 ANKRD2 NM_020349 exon2 c.G226T p.E76X GAGGATGAGAAGC 34 3 0.09 38 0 0 -1 1 1 0 0.00 MUC2 4583 mdanderson.org 37 11 1092920 1092920 + Missense_Mutation SNP C C A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_002457 exon30 c.C4739A p.T1580N CACAGACCCCAAC 23 3 0.13 32 3 0.09375 0 0 MRVI1 10335 mdanderson.org 37 11 10597927 10597927 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_130385 exon21 c.C2691A p.D897E CCAGGAGTCCCTC 41 3 0.07 49 0 0 2 0 0.00 SOX6 55553 mdanderson.org 37 11 16068174 16068174 + Silent SNP C C T rs373068695 TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 SOX6_ENST00000527619,NS,lymphoid_neoplasm,-1,2 SOX6_ENST00000527619 NM_001145819 exon12 c.G1548A p.A516A CTTCCGCGCCTCC 45 3 0.07 52 0 0 -1 2 0 0 ZFP91 80829 mdanderson.org 37 11 58377393 58377393 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001197051 exon3 c.G461T p.S154I GGCGTAGTAGTAG 67 4 0.06 73 0 0 3 0 0.00 CEP57 9702 mdanderson.org 37 11 95546250 95546250 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001243777 exon3 c.G357T p.K119N TTCAAAGAATGAG 41 3 0.07 73 0 0 18 0 0.00 HMBS 3145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118958997 118958997 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 HMBS,NS,carcinoma,+2,1 HMBS NM_000190 exon2 c.C66T p.R22R GATTCGCGTGGGT 63 13 0.21 68 0 0 2 1 41 18 0.44 USP5 8078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6965261 6965261 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_003481 exon4 c.C385T p.L129L GATTACCTGGAGA 263 38 0.14 100 0 0 115 18 0.16 KRT6A 3853 broad.mit.edu 37 12 52883755 52883755 + Missense_Mutation SNP C C G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . KRT6A NM_005554 exon6 c.G1175C p.R392T TCAGATCTCAGCC 220 7 0.03 145 0 0 89 0 0 KRT6A 3853 broad.mit.edu 37 12 52886666 52886666 + Missense_Mutation SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . KRT6A NM_005554 exon1 c.G307A p.G103S CACCACCGAAACC 352 41 0.12 250 0 0 89 0 0 NCOR2 9612 broad.mit.edu 37 12 124887093 124887093 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 NCOR2_ENST00000405201,NS,carcinoma,0,11 NCOR2 NM_006312 exon16 c.G1497A p.Q499Q CTGCTGCTGTTGT 47 3 0.06 41 2 0.0487804878 475 11 8 0 0.00 NCOR2 9612 mdanderson.org 37 12 124887102 124887102 + Silent SNP C C T rs7488825 bycluster;alternate_allele TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_006312 exon16 c.G1488A p.Q496Q TTGTTGCTGCTGC 39 3 0.08 42 0 0 7 0 0.00 . 0 broad.mit.edu 37 12 127423596 127423597 + RNA DEL TG TG - novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . TGTGTTTGTGTGT 7 3 0.43 5 0 0 0 0 SLITRK1 114798 broad.mit.edu 37 13 84455509 84455509 + Missense_Mutation SNP T T C novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . SLITRK1 NM_052910 exon1 c.A134G p.K45R AAGCCCTTTTTTT 105 4 0.04 95 0 0 196 0 0 IGBP1P1 0 broad.mit.edu 37 14 35409700 35409701 + RNA INS - - T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . AAAAAAAATTTTT 7 3 0.43 10 0 0 0 0 MEGF11 84465 broad.mit.edu 37 15 66262977 66262977 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . MEGF11 NM_032445 exon8 c.C813A p.C271X CTGGCTGCAGTTC 115 4 0.03 124 0 0 70 0 0 CLK3 1198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74914482 74914482 + Missense_Mutation SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001130028 exon4 c.C835T p.R279C AGTAAGCGCAGCA 84 18 0.21 95 0 0 38 6 0.16 PTX4 390667 mdanderson.org 37 16 1537645 1537645 + Silent SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001013658 exon2 c.C453A p.R151R CTCCAGGCGTGCC 40 3 0.08 41 0 0 0 0 COQ7 10229 mdanderson.org 37 16 19089428 19089428 + Missense_Mutation SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_016138 exon6 c.G602A p.S201N TGAAGAGCATTAT 43 3 0.07 48 0 0 53 0 0.00 ACSM2A 123876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20471599 20471599 + Missense_Mutation SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001010845 exon3 c.G163A p.A55T CACTGGGCTGACA 96 28 0.29 132 0 0 0 0 CLEC18B 497190 broad.mit.edu 37 16 74444923 74444923 + Missense_Mutation SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 CLEC18B,NS,carcinoma,0,6 CLEC18B NM_001011880 exon9 c.G994A p.G332R GCACCCCGCCTTT 247 4 0.02 301 1 0.0033222591 45 6 3 0 0.00 CTU2 348180 mdanderson.org 37 16 88780056 88780056 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001012759 exon9 c.G875T p.G292V CGCAGGGCTTCTC 37 3 0.08 42 0 0 83 0 0.00 COX10-AS1 100874058 hgsc.bcm.edu;broad.mit.edu 37 17 13972737 13972737 + RNA SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . AGCCCGCCACACT 18 4 0.22 9 0 0 1 0 0.00 . 0 broad.mit.edu 37 17 29371977 29371978 + RNA INS - - A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . GTCTCTGAAAAAA 6 2 0.33 4 0 0 0 0 TRIM37 4591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 57126703 57126703 + Missense_Mutation SNP G G C novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_015294 exon15 c.C1366G p.P456A TATCTGGTGGTGA 116 23 0.20 115 0 0 13 7 0.54 ABCA7 10347 mdanderson.org 37 19 1047263 1047263 + Silent SNP C C A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_019112 exon15 c.C1953A p.S651S CTTCTCCCGCGCC 38 3 0.08 41 0 0 3 0 0.00 C19orf57 79173 mdanderson.org 37 19 13996848 13996848 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_024323 exon7 c.G1689A p.K563K GCCCGGCTTGTTC 35 3 0.09 44 1 0.0227272727 3 0 0.00 ANKLE1 126549 broad.mit.edu 37 19 17397500 17397501 + Frame_Shift_Del DEL TT TT - rs10606406 alternate_allele TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . ANKLE1 . . . . TGTGTGTTTGTGT 12 10 0.83 10 0 0 27 1 0 0.00 NDUFA13 51079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19638552 19638552 + Silent SNP C C A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_015965 exon4 c.C288A p.I96I GGCCATCATCATG 67 23 0.34 53 0 0 1380 532 0.39 ATP1A3 478 mdanderson.org 37 19 42482471 42482471 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001256214 exon13 c.C1677A p.C559X ATAATGGCAGAAA 50 3 0.06 26 0 0 16 0 0.00 ZNF526 116115 mdanderson.org 37 19 42729994 42729994 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_133444 exon3 c.G1439T p.G480V GCAAGGGCTTCAA 32 3 0.09 54 0 0 10 0 0.00 BCL3 602 bcgsc.ca 37 19 45262002 45262002 + Missense_Mutation SNP A A G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . BCL3 NM_005178 exon8 c.A1081G p.K361E AGGGGGAAGGCCA 26 4 0.15 32 0 0 28 30 0 0.00 ZC3H4 23211 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 47570041 47570041 + Missense_Mutation SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . ZC3H4 NM_015168 exon15 c.G3484A p.E1162K CCGGCTCTGTGGC 22 4 0.18 26 0 0 96 12 6 0.50 LHB 3972 mdanderson.org 37 19 49519472 49519472 + Silent SNP C C A rs377599735 alternate_allele TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 LHB,colon,carcinoma,0,2 LHB NM_000894 exon3 c.G279T p.P93P ACCACGCGGGCAG 52 3 0.06 28 0 0 0 2 1 0 0.00 PPP6R1 22870 mdanderson.org 37 19 55742998 55742998 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_014931 exon20 c.C2345A p.A782D TCTGTGGCTTCCT 40 3 0.08 39 0 0 136 0 0.00 U2AF2 11338 mdanderson.org 37 19 56173984 56173984 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001012478 exon6 c.G603T p.E201D TTTGGAGGTGAGC 51 3 0.06 51 1 0.0196078431 271 0 0.00 CHMP2A 27243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 59063125 59063125 + Missense_Mutation SNP C C A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_198426 exon6 c.G560T p.G187V AGCGAGCCCCCAG 56 17 0.30 90 0 0 202 97 0.48 PXDN 7837 hgsc.bcm.edu 37 2 1677521 1677521 + Silent SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_012293 exon9 c.C912A p.I304I GTTCTGGATCATC 98 4 0.04 128 0 0 13 0 0.00 GGT8P 645367 hgsc.bcm.edu 37 2 91964414 91964414 + RNA SNP C C A rs141248674 TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . ATCTATCTATATC 12 4 0.33 19 0 0 0 0 SH3RF3 344558 mdanderson.org 37 2 109746264 109746264 + Missense_Mutation SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001099289 exon1 c.C268T p.H90Y TCGCGCCACGAGC 16 2 0.13 23 0 0 1 0 0.00 TTN 7273 mdanderson.org 37 2 179442124 179442124 + Missense_Mutation SNP T T C novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001267550 exon324 c.A68938G p.S22980G ACCAACTTGATTT 39 3 0.08 42 1 0.0238095238 10 0 0.00 CLK1 1195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201721420 201721420 + Missense_Mutation SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001162407 exon9 c.C1168T p.P390S CTTCAGGTGCTCT 254 72 0.28 283 0 0 70 15 0.21 NDUFS1 4719 broad.mit.edu 37 2 207009656 207009656 + Missense_Mutation SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . NDUFS1 NM_001199984 exon9 c.C874T p.H292Y CCTCATGCATACG 166 5 0.03 170 0 0 82 55 0 0.00 SNED1 25992 broad.mit.edu 37 2 241979571 241979571 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 SNED1,NS,carcinoma,0,1 SNED1 NM_001080437 exon7 c.C1125T p.C375C TGTGTGCCAGGCC 57 5 0.09 39 2 0.0512820513 76 1 1 0 0.00 XRN2 22803 mdanderson.org 37 20 21319686 21319686 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_012255 exon14 c.G1238T p.S413I AGGACAGTTTTAG 50 4 0.08 50 0 0 99 0 0.00 FRG1B 284802 hgsc.bcm.edu 37 20 29628458 29628458 + RNA SNP T T C novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . GTGGTGTTTCAAA 69 5 0.07 73 0 0 0 0 FRG1B 284802 hgsc.bcm.edu 37 20 29628464 29628464 + RNA SNP A A G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . TTTCAAATAGACT 67 4 0.06 70 0 0 0 0 SOGA1 140710 mdanderson.org 37 20 35422006 35422006 + Silent SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_080627 exon14 c.C4479A p.S1493S GAGGCTGGAGAGT 46 3 0.07 30 0 0 3 0 0.00 GATA5 140628 mdanderson.org 37 20 61050111 61050111 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_080473 exon2 c.C467A p.A156D GGCCCGGCAGTCC 14 3 0.21 15 0 0 3 0 0.00 . 7179 broad.mit.edu 37 21 11014937 11014937 + Splice_Site SNP C C T rs76467559 bycluster;byfrequency TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . ACAATACCTATCA 120 7 0.06 95 1 0.0105263158 0 0 CCT8L2 150160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 17072477 17072477 + Missense_Mutation SNP C C G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_014406 exon1 c.G964C p.E322Q TGATCTCCATCCA 130 31 0.24 117 0 0 0 0 TRIM71 131405 mdanderson.org 37 3 32915369 32915369 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001039111 exon2 c.C912T p.G304G AATGGGCCGGCAT 46 3 0.07 57 0 0 14 0 0.00 DZIP3 9666 mdanderson.org 37 3 108373068 108373068 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 DZIP3,colon,carcinoma,0,1 DZIP3 NM_014648 exon19 c.G2110T p.D704Y ATAAAAGATGATG 47 3 0.06 53 0 0 0 1 13 0 0.00 MUC4 4585 bcgsc.ca 37 3 195505870 195505870 + Missense_Mutation SNP G G A rs201928034 TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . MUC4 NM_018406 exon2 c.C12581T p.P4194L GTGACAGGAAGAG 83 7 0.08 77 2 0.025974026 1505 24 2 0.08 FAM157A 728262 hgsc.bcm.edu 37 3 197880167 197880167 + Silent SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001145248 exon2 c.G246A p.Q82Q GCAGCAGCAGCAA 326 17 0.05 405 0 0 0 0 HSD17B4 3295 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 5 118788317 118788317 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_000414 exon1 c.G47T p.G16V TCACCGGCGCGGG 80 5 0.06 68 0 0 40 0 0.00 PCDHB18 54660 hgsc.bcm.edu;ucsc.edu 37 5 140615614 140615614 + RNA SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 PCDHB18,NS,carcinoma,0,2 PCDHB18 . . . . GGACCCGCACCTG 49 6 0.12 37 1 0.027027027 0 2 0 0 CDKAL1 54901 mdanderson.org 37 6 20739812 20739812 + Missense_Mutation SNP G G T rs149431105 bycluster TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 CDKAL1,colon,carcinoma,0,1 CDKAL1 NM_017774 exon6 c.G434T p.R145L AGCCTCGCCAGGA 48 3 0.06 44 0 0 0 0 1 15 0 0.00 RING1 6015 broad.mit.edu;mdanderson.org 37 6 33179304 33179304 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . RING1 NM_002931 exon5 c.G825T p.K275N GGAGAAGGGAGAA 39 4 0.10 34 0 0 40 69 0 0.00 LRRC1 55227 mdanderson.org 37 6 53660065 53660065 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_018214 exon1 c.G11T p.C4F TCCACTGCATCCC 26 3 0.12 21 0 0 3 0 0.00 KHDC3L 154288 mdanderson.org 37 6 74073486 74073486 + Missense_Mutation SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 C6orf221,NS,carcinoma,0,1 C6orf221 NM_001017361 exon3 c.C557T p.A186V AGGCTGCCAACAA 31 3 0.10 33 0 0 0 1 605 0 0.00 ARID1B 57492 broad.mit.edu;mdanderson.org 37 6 157100005 157100005 + Silent SNP C C A rs184815562 bycluster;by1000genomes TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . ARID1B NM_017519 exon1 c.C942A p.G314G CGGCGGCGGAGGA 32 4 0.13 26 0 0 320 0 0 RAC1 5879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6426908 6426908 + Missense_Mutation SNP C C G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_006908 exon2 c.C101G p.P34R ATATCCCTACTGT 108 17 0.16 105 0 0 63 28 0.44 DYNC1I1 1780 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 95439756 95439756 + Missense_Mutation SNP G G A rs377495263 TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . DYNC1I1 NM_004411 exon3 c.G161A p.R54H TGGATCGCAAACG 94 5 0.05 85 0 0 111 0 0 POTEA 340441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 43152474 43152474 + Missense_Mutation SNP C C G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001005365 exon3 c.C460G p.H154D CTACAACATGGCA 176 40 0.23 165 0 0 0 0 RIMS2 9699 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 104831755 104831755 + Missense_Mutation SNP G G A rs377178152 TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 RIMS2_ENST00000507740,NS,carcinoma,0,2 RIMS2_ENST00000507740 NM_014677 exon1 c.G20A p.R7H CATTGCGCCAGGT 84 7 0.08 57 0 0 0 2 0 0 NOV 4856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 120435213 120435213 + Missense_Mutation SNP T T G novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_002514 exon5 c.T915G p.N305K CCACAATACCAAA 215 34 0.16 132 0 0 2 0 0.00 AKNA 80709 mdanderson.org 37 9 117124782 117124782 + Missense_Mutation SNP G G T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_030767 exon8 c.C1820A p.A607D TCTAGGGCCGCGT 38 3 0.08 42 0 0 12 0 0.00 RNR1 6052 hgsc.bcm.edu 37 MT 988 988 + RNA SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . . . . . ACCTGAGTTGTAA 36 32 0.89 43 0 0 0 0 MAGEB1 4112 broad.mit.edu 37 X 30269096 30269096 + Silent SNP C C T rs200431416 by1000genomes;alternate_allele TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . MAGEB1 NM_177415 exon3 c.C486T p.G162G CTTTGGCCTTGAT 193 5 0.03 121 0 0 76 4 0 0.00 TEX13A 56157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 104463847 104463847 + Silent SNP C C T novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_031274 exon5 c.G1029A p.L343L AGACCACAGGCTA 116 35 0.30 87 0 0 0 0 AMMECR1 9949 broad.mit.edu;mdanderson.org 37 X 109561071 109561071 + Missense_Mutation SNP C C A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . AMMECR1 NM_015365 exon1 c.G229T p.G77C CGCCGCCGCAGCC 62 3 0.05 34 0 0 16 3 0 0.00 KLHL13 90293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 117043475 117043475 + Silent SNP G G A novel TCGA-2G-AAL7-01A-11D-A42Y-10 TCGA-2G-AAL7-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d1ddde10-c7a7-40e6-815d-f237235c2cbb 06a9061b-3846-4626-921d-89f61fe675b5 . . NM_001168299 exon6 c.C1164T p.A388A AATGACGGCGATG 153 60 0.39 108 0 0 0 0