Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TIE1 7075 broad.mit.edu 37 1 43779569 43779569 + Missense_Mutation SNP T T C novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . TIE1 NM_005424 exon14 c.T2339C p.L780P CTGCCCTTTTAAC 117 3 0.03 66 0 0 132 67 0 0.00 ZYG11A 440590 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 53343407 53343409 + In_Frame_Del DEL CTT CTT - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 CTT CTT Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . ZYG11A NM_001004339 exon9 c.1595_1597del p.532_533del TGTCACCTTCTTG 154 41 0.27 93 0 0 46 4 0 0.00 LRRC8B 23507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 90058405 90058405 + Missense_Mutation SNP A A T rs201504233 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_015350 exon6 c.A2215T p.N739Y TTGATGAATTTGT 138 32 0.23 70 0 0 0.001 26 8 0.31 FLAD1 80308 broad.mit.edu 37 1 154962054 154962054 + Missense_Mutation SNP A A G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 FLAD1,right_upper_lobe,carcinoma,0,1 FLAD1 NM_025207 exon3 c.A1136G p.K379R GGAAAAAGGTGGC 119 4 0.03 40 0 0 52 1 138 0 0.00 ETV3 2117 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 157094985 157094985 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001145312 exon5 c.C1187T p.S396L CGTGCCGACTGCC 92 5 0.05 55 0 0 45 0 0.00 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 176853487 176853487 + Nonsense_Mutation SNP T T A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_004319 exon19 c.A3214T p.K1072X CCACTTTGGAGTG 167 42 0.25 84 0 0 28 0 0.00 PRG4 23572 bcgsc.ca 37 1 186276165 186276166 + Missense_Mutation DNP CA CA TG novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 CA CA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . PRG4 NM_005807 exon7 c.A1315G p.T439A ACCCACCACCCCC 76 8 0.11 51 0 0 259 6 0 0.00 SOX13 9580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204092277 204092277 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_005686 exon11 c.G1172T p.R391L AGGAGCGGCTGGA 137 82 0.60 98 0 0 112 58 0.52 ZNF503 84858 mdanderson.org 37 10 77159542 77159542 + Silent SNP C C T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_032772 exon2 c.G906A p.P302P GCCTCCCGGGCCC 18 2 0.11 25 0 0 150 0 0.00 PIPSL 0 broad.mit.edu 37 10 95718362 95718365 + RNA DEL TTTC TTTC - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 TTTC TTTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . TTTTCTTTTCTTT 20 9 0.45 8 0 0 1 0 0.00 CRTAC1 55118 mdanderson.org 37 10 99655016 99655016 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001206528 exon11 c.C1472A p.A491E AAGTGTGCCACGG 31 3 0.10 23 0 0 14 0 0.00 MMP21 118856 mdanderson.org 37 10 127461212 127461212 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_147191 exon3 c.C805A p.P269T TGGTGGGAGGTGT 110 5 0.05 87 0 0 0 0 RRP8 23378 mdanderson.org 37 11 6622574 6622574 + Missense_Mutation SNP C C T rs142606127 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 RRP8,NS,carcinoma,0,1 RRP8 NM_015324 exon3 c.G722A p.R241H GCCATGCGGGCTC 47 3 0.06 36 0 0 0 0 1 89 0 0.00 MYRF 745 mdanderson.org 37 11 61545883 61545883 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001127392 exon14 c.G1935T p.L645F GATCTTGCCTGAG 49 4 0.08 28 0 0 62 0 0.00 ATG2A 23130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64662855 64662855 + Silent SNP C C A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_015104 exon40 c.G5487T p.L1829L ATCCTGCAGGGAG 62 27 0.44 55 0 0 85 38 0.45 CLPB 81570 mdanderson.org 37 11 72145171 72145171 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001258394 exon1 c.C106T p.R36C CAGGGCGCACATG 21 2 0.10 29 0 0 28 0 0.00 CNTN5 53942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 99715691 99715691 + Missense_Mutation SNP C C T rs201512506 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001243270 exon4 c.C385T p.P129S GGCAATCCAGTTC 126 27 0.21 94 0 0 0 0 PGR 5241 mdanderson.org 37 11 100999245 100999245 + Missense_Mutation SNP G G T rs11571145 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 PGR,NS,carcinoma,0,1 PGR NM_000926 exon1 c.C557A p.P186H CCCCGGGGCAGCA 22 2 0.09 16 0 0 0 1 0 0 SCNN1A 0 broad.mit.edu 37 12 6457129 6457129 + Silent SNP A A G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . SCNN1A NM_001159576 exon12 c.T2097C p.P699P AGGGGGAGGGGCT 247 10 0.04 75 2 0.0266666667 54 121 0 0.00 KRT85 3891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52758951 52758951 + Missense_Mutation SNP G G A rs148274330 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_002283 exon2 c.C424T p.R142C GGAAGCGCACCTG 92 17 0.18 65 0 0 0 0 C12orf52 84934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113629502 113629502 + Silent SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_032848 exon4 c.G690A p.T230T TTCCACGTCAGGG 111 30 0.27 68 0 0 104 43 0.41 GLT1D1 144423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 129467613 129467613 + Missense_Mutation SNP T T C novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_144669 exon8 c.T779C p.L260P GGAAGCTGGAAGG 62 20 0.32 49 0 0 19 1 0.05 ULK1 8408 mdanderson.org 37 12 132401102 132401102 + Missense_Mutation SNP C C T rs147399196 bycluster;byfrequency;by1000genomes TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_003565 exon20 c.C2038T p.R680W GGCCTGCGGCCAG 48 3 0.06 28 0 0 0.001 146 0 0.00 AKAP11 11215 hgsc.bcm.edu 37 13 42876257 42876257 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_016248 exon8 c.G3375T p.K1125N GCTCAAGGGAGAA 91 4 0.04 136 0 0 5 0 0.00 MYCBP2 23077 mdanderson.org 37 13 77672103 77672103 + Silent SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 MYCBP2_ENST00000407578,NS,NS,-1,15 MYCBP2_ENST00000407578 NM_015057 exon56 c.C9186A p.S3062S TTCTTTGGAAAGT 40 4 0.10 55 0 0 -1 15 10 0 0.00 FOS 2353 mdanderson.org 37 14 75748069 75748069 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_005252 exon4 c.G1085T p.S362I AGGGCAGCAGCAG 32 3 0.09 30 0 0 209 0 0.00 PLA2G4D 283748 mdanderson.org 37 15 42362251 42362251 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_178034 exon19 c.C2086T p.P696S GGAAGGGCAGCCC 25 3 0.12 30 0 0 1 0 0.00 PKD1 5310 mdanderson.org 37 16 2153892 2153892 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001009944 exon23 c.C8166A p.D2722E GATGAGGTCTCCT 15 2 0.13 15 0 0 45 0 0.00 ATP6V0D1 9114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67473035 67473035 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_004691 exon6 c.C655T p.R219C AGGCGCGGCGGTC 47 21 0.45 40 0 0 384 172 0.45 PAFAH1B1 5048 bcgsc.ca 37 17 2585079 2585080 + Frame_Shift_Del DEL GT GT - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 GT GT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . PAFAH1B1 NM_000430 exon11 c.1216_1217del p.406_406del GTAAAAGTGTGGG 141 47 0.33 85 0 0 26 224 0 0.00 USP6 9098 broad.mit.edu 37 17 5050419 5050419 + Missense_Mutation SNP C C A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . USP6 NM_004505 exon21 c.C2361A p.S787R AGTGAGCGGATTT 229 5 0.02 156 0 0 213 0 0 KRTAP4-11 653240 hgsc.bcm.edu 37 17 39274343 39274343 + Silent SNP A A G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 KRTAP4-11,NS,malignant_melanoma,0,2 KRTAP4-11 NM_033059 exon1 c.T225C p.C75C GGGGCGACAGCAG 52 3 0.06 48 0 0 0 2 0 0 . 0 broad.mit.edu 37 17 41382161 41382162 + RNA INS - - G rs11428305 bycluster TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . GAGTACCGGGGGC 6 4 0.67 3 0 0 11 0 0.00 MAP3K3 4215 hgsc.bcm.edu;mdanderson.org 37 17 61767648 61767648 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 MAP3K3,NS,carcinoma,0,2 MAP3K3 NM_203351 exon13 c.G1181T p.R394L ACTGGCGCCGGGG 48 3 0.06 44 0 0 0 2 54 0 0.00 LRRC45 201255 mdanderson.org 37 17 79988001 79988001 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_144999 exon15 c.G1555T p.A519S GACGAGGCGCAGG 25 3 0.12 22 0 0 115 0 0.00 RAB12 201475 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 8609900 8609900 + Missense_Mutation SNP A A T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001025300 exon1 c.A175T p.M59L AGCCTGATGGAGC 101 48 0.48 120 0 0 40 16 0.40 OSBPL1A 114876 mdanderson.org 37 18 21914216 21914216 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_080597 exon6 c.C473A p.T158K AGAGCTGTGAGTT 42 3 0.07 65 0 0 6 0 0.00 SAFB 6294 broad.mit.edu 37 19 5667167 5667167 + Silent SNP T T C novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . SAFB NM_002967 exon18 c.T2445C p.P815P GCCTCCTCCCCCC 145 27 0.19 85 12 0.1411764706 74 849 0 0.00 DNM2 1785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10908073 10908073 + Missense_Mutation SNP C C G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001005361 exon10 c.C1214G p.P405R TCACCCCCGACAT 63 17 0.27 36 0 0 80 27 0.34 ANKLE1 126549 broad.mit.edu 37 19 17397492 17397501 + Frame_Shift_Del DEL TGTGTGTGTT TGTGTGTGTT - rs35771129 alternate_allele TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 TGTGTGTGTT TGTGTGTGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . ANKLE1 . . . . TGTGTGTGTGTGT 11 7 0.64 6 0 0 27 5 0 0.00 TMEM161A 54929 mdanderson.org 37 19 19232599 19232599 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_017814 exon7 c.C625T p.P209S GAAGTGGCTCTAA 42 3 0.07 42 0 0 117 0 0.00 ZNF565 147929 broad.mit.edu;bcgsc.ca 37 19 36673726 36673728 + In_Frame_Del DEL TGT TGT - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 TGT TGT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . ZNF565 NM_001042474 exon5 c.1140_1142del p.380_381del CTCTGATGTCGTG 69 17 0.25 58 0 0 46 39 0 0.00 ZNF565 147929 broad.mit.edu;bcgsc.ca 37 19 36673730 36673734 + Frame_Shift_Del DEL GTGTG GTGTG - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 GTGTG GTGTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . ZNF565 NM_001042474 exon5 c.1134_1138del p.378_380del GATGTCGTGTGAG 67 17 0.25 60 0 0 46 32 0 0.00 PNMAL2 57469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 46997528 46997528 + Missense_Mutation SNP C C T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_020709 exon1 c.G1195A p.A399T CCACGGCGTCCAC 35 9 0.26 27 0 0 15 3 0.20 MERTK 10461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 112760766 112760766 + Splice_Site SNP T T C novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_006343 exon12 c.1786+2T>C . TGAAGGTAAGCAA 160 42 0.26 114 0 0 6 0 0.00 . 284958 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 113480334 113480334 + Silent SNP C C T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . TGGCTGCTCCCGT 114 39 0.34 77 0 0 0 0 WASH2P 375260 bcgsc.ca 37 2 114356239 114356239 + RNA SNP T T C rs77485924 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . TGCCCGTGTGTCA 41 39 0.95 41 16 0.3902439024 12 9 0.75 LOC100131320 0 broad.mit.edu 37 2 130726529 130726529 + RNA DEL A A - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . AAGTGCAAAAAAA 8 3 0.38 6 0 0 0 0 NFE2L2 4780 bcgsc.ca 37 2 178129282 178129282 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . NFE2L2 NM_006164 exon1 c.C23A p.P8Q CCCGGCGGCGGCA 65 4 0.06 61 0 0 225 39 0 0.00 NEU4 129807 mdanderson.org 37 2 242757880 242757880 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001167599 exon4 c.G1000A p.A334T GAGGCTGCTGTAG 31 3 0.10 33 0 0 1 0 0.00 LAMA5 3911 broad.mit.edu;mdanderson.org 37 20 60887507 60887507 + Silent SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . LAMA5 NM_005560 exon68 c.C9309T p.L3103L CCGCTTGAGGTCC 8 4 0.50 9 0 0 268 279 131 0.47 MX2 4600 broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 42767524 42767524 + Silent SNP C C A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . MX2 NM_002463 exon7 c.C882A p.T294T CCTGACCAAACCA 243 9 0.04 193 0 0 84 10 0 0.00 SCN10A 6336 mdanderson.org 37 3 38805080 38805080 + Missense_Mutation SNP C C A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_006514 exon5 c.G607T p.G203C CTGTGCCAACATA 22 2 0.09 23 0 0 0 0 GNL3 26354 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 52721395 52721396 + Frame_Shift_Del DEL AG AG - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 .,1 GNL3 NM_014366 exon3 c.205_206del p.69_69del GGAAACAGAGGGT 230 66 0.29 183 0 0 37 291 0 0.00 . 0 broad.mit.edu 37 3 111197863 111197878 + RNA DEL CACACACACACACACA CACACACACACACACA - rs71945922 alternate_allele TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 CACACACACACACACA CACACACACACACACA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . CAGCCTCACACAC 6 3 0.50 4 0 0 0 0 SEMA5B 54437 broad.mit.edu;mdanderson.org 37 3 122631795 122631795 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . SEMA5B NM_001256347 exon18 c.C2782T p.R928C GGACGCGGAAGCC 104 28 0.27 77 0 0 303 57 17 0.30 MUC4 4585 mdanderson.org 37 3 195511417 195511417 + Missense_Mutation SNP G G A rs74839766 bycluster;byfrequency TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_018406 exon2 c.C7034T p.A2345V GTGGATGCTGAGG 98 6 0.06 82 3 0.0365853659 0.008 0 0 ABCA11P 79963 hgsc.bcm.edu 37 4 466474 466474 + RNA SNP C C T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . . . . . ACATCCCTGAATG 119 7 0.06 113 0 0 31 1 0.03 OTUD4 54726 broad.mit.edu 37 4 146059041 146059041 + Silent SNP A A G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 OTUD4,bladder,carcinoma,0,2 OTUD4 NM_001102653 exon21 c.T2691C p.H897H GGGAGGATGAGCC 84 4 0.05 75 2 0.0266666667 120 2 19 0 0.00 ANKH 56172 mdanderson.org 37 5 14746005 14746005 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_054027 exon7 c.C889A p.R297S CAGCACGGATTTC 52 3 0.06 61 0 0 31 0 0.00 FTMT 94033 mdanderson.org 37 5 121187745 121187745 + Silent SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_177478 exon1 c.G87T p.P29P GCTCCCGCTGCGT 17 3 0.18 15 0 0 0 0 TCOF1 6949 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 149767638 149767638 + Silent SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001135243 exon18 c.G3033A p.Q1011Q TACACAGTGCTTG 156 7 0.04 155 0 0 116 10 0.09 DSP 1832 bcgsc.ca 37 6 7583862 7583862 + Missense_Mutation SNP C C T rs372242085 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 DSP,colon,carcinoma,0,1 DSP NM_004415 exon24 c.C6367T p.R2123C GGAATGCGCCTGC 47 4 0.09 42 0 0 306 1 98 0 0.00 CMAHP 0 broad.mit.edu 37 6 25089567 25089568 + RNA INS - - A rs3838674 bycluster;byfrequency;by1000genomes TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . CMAHP . . . . AGTCTGCCCCAGC 11 6 0.55 4 0 0 6 0 0 SPACA1 81833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 88757823 88757823 + Missense_Mutation SNP C C A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_030960 exon1 c.C200A p.T67N CTGAAACCGAGGA 107 31 0.29 96 0 0 0 0 CHST12 55501 broad.mit.edu;ucsc.edu;mdanderson.org 37 7 2472936 2472936 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . CHST12 NM_018641 exon2 c.G662T p.R221L TCTGGCGCCGCTA 42 4 0.10 28 0 0 39 62 0 0.00 GRID2IP 392862 broad.mit.edu 37 7 6547896 6547901 + In_Frame_Del DEL CTGAGC CTGAGC - novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 CTGAGC CTGAGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . GRID2IP NM_001145118 exon13 c.2259_2264del p.753_755del GGGGGGCTGAGCG 44 10 0.23 30 0 0 82 0 0 FAM126A 84668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 23016321 23016321 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_032581 exon6 c.C521T p.A174V TTCTGTGCTGTCA 113 29 0.26 81 0 0 9 4 0.44 KPNA7 402569 broad.mit.edu 37 7 98790654 98790654 + Silent SNP T T G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . KPNA7 NM_001145715 exon5 c.A624C p.S208S GGTGGGTGAAATC 82 14 0.17 60 8 0.1333333333 31 0 0 MUC17 140453 mdanderson.org 37 7 100679429 100679429 + Missense_Mutation SNP T T A rs140211003 alternate_allele TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001040105 exon3 c.T4732A p.L1578M ACAAGTTTGCCTG 119 10 0.08 81 1 0.012345679 0 0 ZNF425 155054 broad.mit.edu;bcgsc.ca 37 7 148801009 148801009 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . ZNF425 NM_001001661 exon4 c.C1954T p.R652W TGAGCCGGTACTG 105 5 0.05 81 0 0 99 21 0 0.00 SSPO 23145 mdanderson.org 37 7 149474749 149474749 + Missense_Mutation SNP A A G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_198455 exon5 c.A548G p.Q183R TGGGCCAGCTCTG 28 3 0.11 21 0 0 4 0 0.00 ASIC3 9311 mdanderson.org 37 7 150746458 150746458 + Silent SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_020322 exon1 c.G486T p.L162L GCTGCTGGACTGT 41 3 0.07 33 0 0 20 0 0.00 FASTK 10922 mdanderson.org 37 7 150774452 150774452 + Silent SNP C C A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_006712 exon7 c.G1236T p.L412L CCCCAGCAGCTGG 32 3 0.09 32 0 0 543 0 0.00 MTERFD1 51001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 97263294 97263294 + Missense_Mutation SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_015942 exon4 c.C517T p.P173S CTTCTGGATGTTT 52 14 0.27 38 0 0 132 39 0.30 CPSF1 29894 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145623257 145623257 + Missense_Mutation SNP T T C novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . CPSF1 NM_013291 exon20 c.A1985G p.E662G TGGCCCTCGGCAC 49 5 0.10 48 0 0 92 201 6 0.03 ARHGAP39 80728 mdanderson.org 37 8 145830968 145830968 + Missense_Mutation SNP C C T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_025251 exon3 c.G32A p.S11N TTATGGCTCCTGC 41 3 0.07 40 0 0 17 0 0.00 KANK1 23189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 745199 745199 + Silent SNP G G A rs148157700 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 KANK1_ENST00000382303,NS,carcinoma,0,2 KANK1_ENST00000382303 NM_001256876 exon16 c.G4023A p.T1341T GAAGACGTCTCCT 124 54 0.44 158 0 0 0 0 2 49 24 0.49 GNAQ 2776 mdanderson.org 37 9 80430537 80430537 + Silent SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_002072 exon3 c.C471A p.T157T CTATTTGGTAGAG 48 3 0.06 62 0 0 17 0 0.00 C9orf47 286223 mdanderson.org 37 9 91606483 91606483 + Silent SNP C C T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001001938 exon2 c.C345T p.D115D GAACGACGTCGCG 15 2 0.13 14 0 0 10 0 0.00 NEK6 10783 broad.mit.edu 37 9 127089658 127089658 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 NEK6,NS,carcinoma,0,1 NEK6 NM_001166171 exon8 c.G658T p.V220L GGCGTCGTGAAGC 62 3 0.05 64 0 0 47 1 78 0 0.00 COL5A1 1289 mdanderson.org 37 9 137593103 137593103 + Missense_Mutation SNP G G A rs142933609 bycluster;by1000genomes TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 COL5A1,bladder,carcinoma,+1,3 COL5A1 NM_000093 exon4 c.G578A p.R193H TCGACCGCAGCGA 68 4 0.06 77 0 0 0 1 3 203 0 0.00 CARD9 64170 mdanderson.org 37 9 139262259 139262259 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_052813 exon8 c.C1099A p.L367M CGTGCAGCTCCTC 24 3 0.13 12 0 0 9 0 0.00 RBM10 8241 broad.mit.edu 37 X 47030582 47030582 + Missense_Mutation SNP G G T novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . RBM10 NM_001204468 exon4 c.G552T p.E184D GGAGGAGGATGAG 77 4 0.05 46 0 0 117 14 0 0.00 NUDT10 170685 broad.mit.edu 37 X 51076024 51076024 + Silent SNP G G A rs2801626 TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . NUDT10 NM_153183 exon2 c.G207A p.E69E CGAAGAGGCGGGA 256 6 0.02 148 2 0.0135135135 28 47 0 0.00 HMGB3 3149 mdanderson.org 37 X 150156360 150156360 + Silent SNP G G A novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_005342 exon5 c.G576A p.E192E AGAAGAGGAGGAG 16 2 0.13 10 0 0 164 2 0.01 FLNA 2316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153583390 153583390 + Missense_Mutation SNP C C G novel TCGA-2G-AAL5-01A-11D-A42Y-10 TCGA-2G-AAL5-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 171689da-01a4-40f0-81f1-2e31c2e22def 89d0a1e3-1b77-413f-aa1f-f31cc665e959 . . NM_001110556 exon31 c.G5020C p.V1674L TGTCCACAGTGAT 118 53 0.45 90 0 0 1418 652 0.46