Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SPEN 23013 bcgsc.ca 37 1 16199321 16199321 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf SPEN,NS,carcinoma,0,1 SPEN NM_015001 exon2 c.G94T p.V32L GGCCGCGTGGAAA 55 0 0.00 52 0 0 374 1 74 0 0.00 SPEN 23013 mdanderson.org 37 1 16258924 16258924 + Silent SNP A A G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_015001 exon11 c.A6189G p.V2063V AGTTGTAGAGAAA 59 3 0.05 88 0 0 255 0 0.00 . 0 broad.mit.edu 37 1 16959834 16959834 + RNA SNP G G T rs201123694 bycluster;byfrequency TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf Q6ZWC0_HUMAN,NS,carcinoma,0,1 . . . . . GCTGCAGCGGGTC 52 10 0.19 41 1 0.0243902439 1 16 3 0.19 ECE1 1889 mdanderson.org 37 1 21560084 21560084 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001397 exon14 c.C1637T p.A546V TGATCGGCAGTGA 59 4 0.07 51 0 0 119 0 0.00 ZMYM4 9202 bcgsc.ca 37 1 35836147 35836147 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . ZMYM4 NM_005095 exon7 c.C1100T p.T367I GCTCCACACTGTG 76 0 0.00 97 0 0 143 31 0 0.00 NRAS 4893 bcgsc.ca 37 1 115256529 115256529 + Missense_Mutation SNP T T C rs11554290 bycluster;byfrequency;byhapmap TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf NRAS,NS,haematopoietic_neoplasm,-1,2068 NRAS NM_002524 exon3 c.A182G p.Q61R TCTTCTTGTCCAG 124 0 0.00 103 0 0 3766 2068 68 0 0.00 . 0 broad.mit.edu 37 1 143195473 143195473 + RNA DEL A A - novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . AAAAGCAAAAAAA 11 6 0.55 6 1 0.1666666667 0 0 CR1 1378 broad.mit.edu 37 1 207749012 207749012 + Silent SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CR1 NM_000651 exon28 c.G4524A p.P1508P GAAGCCGCCAATT 286 4 0.01 287 0 0 354 6 0 0.00 ARMC3 219681 bcgsc.ca 37 10 23290962 23290962 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . ARMC3 NM_173081 exon12 c.G1540A p.A514T CTGACGGCCAATG 109 0 0.00 113 0 0 102 2 0 0.00 UNC5B 219699 mdanderson.org 37 10 73056412 73056412 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_170744 exon15 c.G2403T p.L801F CAGCTTGGCCTCC 41 3 0.07 67 0 0 2 0 0.00 SMC3 9126 bcgsc.ca 37 10 112361739 112361739 + Missense_Mutation SNP G G C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . SMC3 NM_005445 exon25 c.G2908C p.E970Q AAACTTGAGCAGT 144 0 0.00 140 0 0 103 483 1 0.00 MTG1 92170 mdanderson.org 37 10 135207793 135207793 + Silent SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_138384 exon1 c.C69T p.C23C CCTGTGCGGTCGC 14 2 0.14 12 0 0 72 0 0.00 KRTAP5-5 439915 mdanderson.org 37 11 1651442 1651442 + Silent SNP G G C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf KRTAP5-5,bladder,carcinoma,0,4 KRTAP5-5 NM_001001480 exon1 c.G372C p.G124G TGGGGGGTCCAAG 35 4 0.11 48 4 0.0833333333 0 4 0 0 FOLH1 2346 bcgsc.ca 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . FOLH1 NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 153 8 0.05 182 2 0.010989011 141 0 0 C11orf92 399948 mdanderson.org 37 11 111168758 111168758 + RNA SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GGGAATCAGTCTG 41 3 0.07 63 0 0 0 0 NCAM1 4684 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 113076296 113076296 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001242608 exon5 c.A398G p.E133G AGGGGGAAGATGC 115 5 0.04 137 0 0 3 0 0.00 PHLDB1 23187 mdanderson.org 37 11 118498701 118498701 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001144758 exon6 c.G1162T p.V388F CCTCCAGTCCCTG 39 3 0.08 70 0 0 22 0 0.00 KDM5A 5927 bcgsc.ca 37 12 459828 459828 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf KDM5A_ENST00000399788,NS,carcinoma,+1,4 KDM5A NM_001042603 exon10 c.C1267T p.P423S TCACCGGAAATCC 219 0 0.00 183 0 0 307 4 39 0 0.00 ASIC1 41 mdanderson.org 37 12 50452708 50452708 + Silent SNP C C A rs653576 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_020039 exon2 c.C159A p.S53S GGGCTCCCTGGCT 73 2 0.03 60 0 0 4 0 0.00 PTPRB 5787 bcgsc.ca 37 12 70970172 70970172 + Missense_Mutation SNP T T A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . PTPRB NM_001109754 exon11 c.A2832T p.Q944H CCGCTCTTGGCTG 110 0 0.00 108 0 0 676 8 0 0.00 CCDC60 160777 mdanderson.org 37 12 119866560 119866560 + Nonsense_Mutation SNP C C T rs373119369 TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf CCDC60,NS,malignant_melanoma,-1,3 CCDC60 NM_178499 exon2 c.C163T p.R55X CTTATACGAAGCC 52 3 0.06 48 0 0 -1 3 0 0 TMEM132C 92293 mdanderson.org 37 12 129190080 129190080 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001136103 exon9 c.C2567T p.A856V GAAGAGCCACTAC 33 3 0.09 44 0 0 27 0 0.00 . 0 broad.mit.edu;ucsc.edu 37 13 52035085 52035085 + RNA SNP C C A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTGACTCATGATG 41 4 0.10 46 0 0 8 0 0.00 . 0 broad.mit.edu 37 14 20136847 20136848 + RNA INS - - GAGGGGAGCGCGGC rs372682945 bycluster TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . CGGGAGGGAGGGG 23 5 0.22 34 0 0 0 0 KIAA0391 0 bcgsc.ca 37 14 35593060 35593060 + Silent SNP C C G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . KIAA0391 NM_014672 exon2 c.C609G p.A203A GAAAGCCAGATAT 103 0 0.00 114 0 0 35 37 0 0.00 KCNH5 27133 mdanderson.org 37 14 63417243 63417243 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_172375 exon7 c.T977C p.V326A AGACGCACCACTT 14 2 0.14 21 0 0 1 0 0.00 CYP19A1 1588 bcgsc.ca 37 15 51504564 51504564 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CYP19A1 NM_031226 exon10 c.T1216C p.F406L GGAAAAACTCGAG 136 0 0.00 138 1 0.0072463768 75 0 0 CCDC154 645811 mdanderson.org 37 16 1486047 1486047 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001143980 exon14 c.C1528A p.L510I ATAGTAGCGTGGC 44 3 0.07 40 0 0 6 0 0.00 ATF7IP2 80063 mdanderson.org 37 16 10531989 10531989 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001256160 exon6 c.G992T p.S331I TCTATAGCATAAA 53 3 0.06 42 0 0 8 0 0.00 IL27 246778 broad.mit.edu 37 16 28511197 28511197 + Silent SNP T T C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . IL27 NM_145659 exon5 c.A507G p.E169E CTCCTCTTCCTCC 41 5 0.12 53 0 0 27 1 0 0.00 PITPNM3 83394 mdanderson.org 37 17 6358778 6358778 + Silent SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_031220 exon20 c.C2805A p.P935P GGCGGCGGGCGGG 23 3 0.13 31 0 0 0 0 TBC1D26 353149 broad.mit.edu;mdanderson.org 37 17 15641610 15641610 + Missense_Mutation SNP A A G rs202131240 TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . TBC1D26 NM_178571 exon7 c.A296G p.Y99C GAGTATACAAAGT 89 5 0.06 89 0 0 16 0 0 MED9 55090 mdanderson.org 37 17 17380478 17380478 + Silent SNP T T C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_018019 exon1 c.T123C p.P41P TGCGCCTCAACCG 52 3 0.06 74 0 0 40 0 0.00 ERAL1 26284 broad.mit.edu 37 17 27182148 27182148 + Silent SNP T T C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf ERAL1,NS,carcinoma,+1,1 ERAL1 NM_005702 exon1 c.T96C p.P32P GATCCCTTTTTCC 145 4 0.03 157 0 0 28 1 72 0 0.00 ATAD5 79915 bcgsc.ca 37 17 29162012 29162012 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf ATAD5,NS,carcinoma,-2,1 ATAD5 NM_024857 exon2 c.A913G p.I305V GGTTATATAAGTG 230 0 0.00 226 0 0 150 1 8 0 0.00 HNF1B 6928 mdanderson.org 37 17 36104627 36104627 + Silent SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001165923 exon1 c.C249A p.G83G GTCGTCGCCGTCC 31 3 0.10 41 0 0 4 0 0.00 FAM104A 84923 bcgsc.ca 37 17 71228444 71228444 + Translation_Start_Site SNP A A C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf FAM104A,NS,carcinoma,+1,1 FAM104A NM_032837 exon1 c.T2G p.M1R CCCCCCATGTCGC 37 0 0.00 34 0 0 15 1 1 0 0.00 C2CD4C 126567 mdanderson.org 37 19 407125 407125 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001136263 exon2 c.C1237T p.P413S TCAGGGGCAGCTC 37 3 0.08 27 0 0 27 0 0.00 PRAM1 84106 broad.mit.edu 37 19 8555089 8555089 + Missense_Mutation SNP A A G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . PRAM1 NM_032152 exon10 c.T1997C p.L666P AGGGGGAGTGGTT 118 6 0.05 113 3 0.0265486726 53 9 0 0.00 SLC35E1 79939 mdanderson.org 37 19 16682776 16682776 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_024881 exon1 c.C400T p.P134S ACACGGGCACCTT 50 3 0.06 56 0 0 18 0 0.00 CILP2 148113 ucsc.edu 37 19 19655587 19655587 + Missense_Mutation SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CILP2 NM_153221 exon8 c.G2233A p.A745T GCCTACGCCAACG 19 4 0.21 12 0 0 84 53 0 0.00 . 0 broad.mit.edu 37 19 20262850 20262850 + RNA DEL T T - rs58259738 bycluster TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TTTTTCTTTTTTT 6 3 0.50 7 0 0 0 0 MEGF8 1954 mdanderson.org 37 19 42847747 42847747 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001271938 exon9 c.G1632T p.K544N GTACAAGGTGCCC 23 3 0.13 35 0 0 11 0 0.00 PSG3 5671 hgsc.bcm.edu 37 19 43236936 43236936 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf PSG3,bladder,carcinoma,0,1 PSG3 NM_021016 exon3 c.C709A p.P237T ACTCACGGAGGAG 47 2 0.04 39 0 0 0 1 0 0 SCAF1 58506 bcgsc.ca 37 19 50154180 50154202 + Frame_Shift_Del DEL CACGGGAGACGGGGGCCCTGCCC CACGGGAGACGGGGGCCCTGCCC - novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 CACGGGAGACGGGGGCCCTGCCC CACGGGAGACGGGGGCCCTGCCC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . SCAF1 NM_021228 exon7 c.534_556del p.178_186del CTTGGGCACGGGA 92 0 0.00 93 0 0 78 63 0 0.00 ZNF816 125893 mdanderson.org 37 19 53456016 53456016 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001202456 exon3 c.C178A p.L60M ACTCCAGGTTCCT 40 3 0.08 30 0 0 15 0 0.00 UBE2M 9040 bcgsc.ca 37 19 59067702 59067702 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . UBE2M NM_003969 exon5 c.G392A p.G131D TGCAGGCCATAAA 93 0 0.00 115 0 0 14 254 0 0.00 AGBL5 60509 mdanderson.org 37 2 27291584 27291584 + Missense_Mutation SNP G G T rs145155050 alternate_allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_021831 exon13 c.G2327T p.R776L GAGCTCGGATGCC 72 4 0.06 100 0 0 30 0 0.00 LOC1720 0 bcgsc.ca 37 2 83084363 83084363 + RNA SNP A A G rs376641495 alternate_allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . ACAAGGATCATAC 64 0 0.00 65 0 0 0 0 ANKRD20A8P 0 broad.mit.edu 37 2 95490975 95490977 + RNA DEL TGT TGT - rs376152132 TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 TGT TGT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TGCTGCTGTTGTT 6 2 0.33 6 0 0 0 0 WASH2P 0 broad.mit.edu 37 2 114355774 114355784 + RNA DEL GAGGTGGCTGG GAGGTGGCTGG - novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 GAGGTGGCTGG GAGGTGGCTGG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTCCCCGAGGTGG 9 4 0.44 4 0 0 9 0 0.00 LRP2 4036 mdanderson.org 37 2 169997025 169997025 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_004525 exon72 c.C13139A p.P4380Q CTGCATGGGGGGG 43 3 0.07 45 0 0 0 0 FRG1B 0 broad.mit.edu 37 20 29628299 29628300 + Missense_Mutation DNP AG AG GA novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 AG AG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf FRG1B,bladder,carcinoma,0,16 FRG1B . . . p.S101D GCAAAAAGTAAAA 237 5 0.02 217 1 0.0046082949 181 16 272 0 0.00 ANKRD30BP2 0 broad.mit.edu 37 21 14415122 14415122 + RNA SNP C C T rs373171837 bycluster TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GGGAGGCTTGTGC 24 5 0.21 24 0 0 0 0 KRTAP10-10 353333 mdanderson.org 37 21 46058034 46058034 + Missense_Mutation SNP G G A rs1785472 by2hit2allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_181688 exon1 c.G700A p.V234M CGCCCCGTGTGCT 51 4 0.08 56 0 0 0 0 DGCR2 9993 mdanderson.org 37 22 19052402 19052402 + Missense_Mutation SNP C C A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_005137 exon4 c.G507T p.W169C CTGGTCCCATTCC 46 3 0.07 45 0 0 65 0 0.00 CLDN5 7122 mdanderson.org 37 22 19511708 19511708 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001130861 exon1 c.C326A p.A109E CCGCACGCCAGGA 26 2 0.08 23 0 0 18 0 0.00 TMPRSS6 164656 mdanderson.org 37 22 37480838 37480838 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_153609 exon9 c.C1042A p.Q348K CGCCCTGGGAGTC 25 2 0.08 40 1 0.025 1 0 0.00 SH3BP1 23616 mdanderson.org 37 22 38044407 38044407 + Silent SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_018957 exon14 c.G1281T p.L427L AGTCCTGGGACCC 33 3 0.09 49 0 0 282 0 0.00 SI 6476 bcgsc.ca 37 3 164709207 164709207 + Missense_Mutation SNP A A T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . SI NM_001041 exon44 c.T5042A p.I1681K AGGTTTATTGTGT 147 0 0.00 135 0 0 500 0 0 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 55593603 55593603 + Missense_Mutation SNP T T G rs121913235 bycluster TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf KIT,NS,germ_cell_tumour,0,64 KIT NM_000222 exon11 c.T1669G p.W557G GTACAGTGGAAGG 115 11 0.10 123 0 0 0 64 174 52 0.30 DSPP 1834 broad.mit.edu 37 4 88536079 88536079 + Silent SNP T T C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . DSPP NM_014208 exon5 c.T2265C p.S755S TGACAGTAGCGAT 92 10 0.11 78 1 0.0128205128 174 0 0 DCHS2 54798 mdanderson.org 37 4 155411422 155411422 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001142552 exon1 c.C1086A p.S362R CACGCCGCTCAGC 36 3 0.08 62 0 0 0 0 . 10934 bcgsc.ca 37 4 174537281 174537281 + RNA SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . GTGGCACTCCATA 208 0 0.00 210 0 0 0 0 PLEKHG4B 153478 mdanderson.org 37 5 144949 144949 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_052909 exon4 c.G751T p.V251F AAAGAGGTCCGGG 51 4 0.08 51 0 0 29 0 0.00 MBOAT1 154141 mdanderson.org 37 6 20151480 20151480 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001080480 exon3 c.C259A p.L87I CAAAAAGATGCAC 43 3 0.07 34 0 0 15 0 0.00 COL11A2 1302 mdanderson.org 37 6 33133977 33133977 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_080680 exon61 c.G4399A p.A1467T GGCCAGCAGGTCC 29 3 0.10 29 0 0 1 0 0.00 BAK1 578 mdanderson.org 37 6 33543581 33543581 + Silent SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001188 exon3 c.G195A p.L65L AGGTTGCAGAGGT 39 3 0.08 53 0 0 55 0 0.00 KLC4 89953 broad.mit.edu 37 6 43039101 43039101 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . KLC4 NM_201523 exon9 c.G1298T p.G433V AGTTTGGGTCTGT 155 4 0.03 154 0 0 89 22 0 0.00 C6orf70 55780 hgsc.bcm.edu;mdanderson.org 37 6 170175417 170175417 + Nonsense_Mutation SNP G G T rs376417698 alternate_allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf C6orf70,NS,carcinoma,0,1 C6orf70 NM_018341 exon14 c.G1369T p.E457X TTCCCCGAAGAAC 52 3 0.06 58 0 0 0 1 106 0 0.00 NT5C3A 51251 bcgsc.ca 37 7 33102326 33102326 + Missense_Mutation SNP C C G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_001002010 exon1 c.G7C p.A3P ACGGGGCCCTCAT 126 1 0.01 107 0 0 7 0 0.00 CAMK2B 816 broad.mit.edu 37 7 44268438 44268439 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . CAMK2B NM_001220 exon19 c.1425_1426insC p.P475fs GCAGGGCGGGGGC 51 8 0.16 53 0 0 56 0 0 GTF2IRD2P1 0 broad.mit.edu 37 7 72685060 72685061 + RNA INS - - A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . AGACTCCTCTCAG 7 3 0.43 3 0 0 1 0 0.00 PHTF2 57157 broad.mit.edu 37 7 77531162 77531162 + Missense_Mutation SNP T T C novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . PHTF2 NM_001127359 exon5 c.T268C p.F90L TTCCCCTTTTTCT 308 5 0.02 336 0 0 104 199 0 0.00 MUC17 140453 hgsc.bcm.edu 37 7 100678918 100678918 + Silent SNP G G A rs200627718 byfrequency TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf MUC17,colon,carcinoma,+1,1 MUC17 NM_001040105 exon3 c.G4221A p.P1407P CACGCCGGTAGTC 86 5 0.06 85 1 0.0117647059 0.002 1 1 0 0 LAMB1 3912 mdanderson.org 37 7 107570055 107570055 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_002291 exon30 c.C4547A p.A1516D AAATCAGCACTAT 89 4 0.04 89 0 0 65 0 0.00 SSPO 23145 mdanderson.org 37 7 149474940 149474940 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_198455 exon5 c.C739T p.R247W TGTCAGCGGGTGA 20 2 0.10 30 0 0 0 0 KCNH2 3757 hgsc.bcm.edu 37 7 150671831 150671831 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_000238 exon2 c.G275A p.R92H ACTTTGCGCTCCT 121 5 0.04 123 0 0 17 0 0.00 ASIC3 9311 broad.mit.edu 37 7 150746098 150746098 + Silent SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_020322 exon1 c.G126T p.R42R GCGCCGGGGGATG 68 3 0.04 98 0 0 41 0 0.00 ERICH1 157697 bcgsc.ca 37 8 623373 623373 + Missense_Mutation SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf ERICH1,NS,carcinoma,+1,1 ERICH1 NM_207332 exon4 c.G979A p.E327K CTTCCTCGCTGGC 115 0 0.00 134 0 0 50 1 64 0 0.00 CHRNA2 1135 mdanderson.org 37 8 27327404 27327404 + Silent SNP G G T rs200729883 by1000genomes;alternate_allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_000742 exon3 c.C168A p.T56T AGTCTCGGTATGC 73 5 0.07 70 0 0 0 0 PURG 29942 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 8 30889696 30889696 + Silent SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf PURG_ENST00000475541,colon,carcinoma,-2,2 PURG_ENST00000475541 NM_013357 exon1 c.C603A p.T201T CATCATGGTTTGT 114 8 0.07 117 0 0 -2 2 0 0 GDAP1 54332 bcgsc.ca 37 8 75262792 75262792 + Silent SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . GDAP1 NM_018972 exon1 c.G96T p.T32T TTGGACGCATTCG 41 0 0.00 60 0 0 36 8 0 0.00 tRNA-Glu 0 hgsc.bcm.edu 37 MT 14698 14698 + RNA SNP G G A novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . AACCACGACCAAT 65 6 0.09 186 0 0 0 0 ZFX 7543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 24228773 24228773 + Silent SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_003410 exon10 c.C1698T p.H566H AAAGCACATGAGA 151 20 0.13 166 0 0 25 6 0.24 DDX3X 1654 hgsc.bcm.edu;broad.mit.edu 37 X 41204800 41204801 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . DDX3X NM_001356 exon12 c.1314_1315insG p.T438fs TGCAACAGGTAAC 214 30 0.14 226 0 0 138 196 0 0.00 TEX13A 56157 mdanderson.org 37 X 104464815 104464815 + Silent SNP C C T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_031274 exon2 c.G267A p.R89R CCGCACCCTGTGC 39 3 0.08 37 0 0 0 0 HCFC1 3054 mdanderson.org 37 X 153223524 153223524 + Silent SNP G G T rs370251100 alternate_allele TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . NM_005334 exon11 c.C1980A p.T660T GGTGATGGTCTTG 53 3 0.06 57 1 0.0175438596 64 0 0.00 DNM1 1759 mdanderson.org 37 9 130996383 130996383 + Missense_Mutation SNP G G T novel TCGA-2G-AAKO-01A-11D-A42Y-10 TCGA-2G-AAKO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6f5020af-426f-498a-8b86-56a7cbd58bc9 ca26dacd-984e-46b3-ad5e-671c3c639fbf . . . . . . TAAGGAGCAGGTG 48 3 0.06 48 0 0 24 0 0.00