Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AJAP1 55966 mdanderson.org 37 1 4772463 4772463 + Missense_Mutation SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_018836 exon2 c.C533T p.T178I CAGAGACTGAGTT 44 3 0.07 53 0 0 4 0 0.00 GRHL3 57822 broad.mit.edu 37 1 24666205 24666205 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d GRHL3,NS,carcinoma,-2,1 GRHL3 NM_021180 exon8 c.G1015T p.A339S GAGGTGGCCTATA 117 4 0.03 125 0 0 69 1 0 0 TMEM57 55219 broad.mit.edu 37 1 25812258 25812258 + Missense_Mutation SNP C C T rs142677711 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d TMEM57,colon,carcinoma,-1,1 TMEM57 NM_018202 exon8 c.C1468T p.R490W GCTGCCCGGGCTG 85 3 0.04 92 0 0 72 1 63 0 0.00 UBXN11 91544 bcgsc.ca 37 1 26608904 26608904 + Silent SNP A A G rs201519763 by1000genomes TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . UBXN11 NM_183008 exon16 c.T1449C p.P483P GGGACCAGGACTG 43 5 0.12 41 0 0 54 26 0 0.00 BAI2 576 broad.mit.edu 37 1 32203076 32203076 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . BAI2 NM_001703 exon20 c.C2933A p.A978E TTGGATGCCAAGA 199 6 0.03 264 0 0 128 3 0 0.00 MIR137HG 400765 hgsc.bcm.edu 37 1 98511786 98511786 + RNA SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . TGCCGCCGCCGCC 71 5 0.07 80 0 0 0 0 IGSF3 3321 ucsc.edu 37 1 117142613 117142613 + Missense_Mutation SNP C C T rs76151115 bycluster;byfrequency TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . IGSF3 NM_001542 exon8 c.G2039A p.R680Q GCCAGTCGCGTCC 60 10 0.17 62 6 0.0967741935 294 59 0 0.00 FLJ39739 0 broad.mit.edu 37 1 143743290 143743291 + RNA INS - - A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . GTATCTGAATCTG 11 4 0.36 18 0 0 5 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145116193 145116193 + RNA DEL G G - novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . CTGGCTGGGGCAT 7 2 0.29 4 0 0 102 0 0.00 RUSC1-AS1 284618 mdanderson.org 37 1 155290690 155290690 + Missense_Mutation SNP A A G novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001039517 exon2 c.T590C p.L197P TGTGCTAGTGCCC 36 4 0.11 43 0 0 0 0 . 0 broad.mit.edu 37 1 160905270 160905270 + RNA DEL A A - novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . CAAAACAAAAAAA 6 2 0.33 6 0 0 0 0 AXDND1 126859 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 179504046 179504046 + Missense_Mutation SNP G G C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d AXDND1,caecum,carcinoma,0,2 AXDND1 NM_144696 exon25 c.G2980C p.E994Q CAACAAGAAGAAG 230 7 0.03 280 1 0.0035714286 142 2 0 0 C1orf116 79098 broad.mit.edu 37 1 207196070 207196070 + Missense_Mutation SNP G G T rs200569642 alternate_allele TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . C1orf116 NM_023938 exon4 c.C1039A p.R347S CTTTACGTGCTTT 72 3 0.04 103 0 0 64 0 0 ARID5B 84159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 63700112 63700118 + Frame_Shift_Del DEL AACCCTA AACCCTA - novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 AACCCTA AACCCTA Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . ARID5B NM_032199 exon3 c.446_452del p.149_151del GCAGTCAACCCTA 83 36 0.43 141 0 0 125 2 0 0.00 NRAP 4892 mdanderson.org 37 10 115423606 115423606 + Silent SNP C C A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001261463 exon1 c.G36T p.G12G ATAAACCCCATAC 49 3 0.06 73 0 0 0 0 WDR11 55717 broad.mit.edu 37 10 122643308 122643308 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . WDR11 NM_018117 exon14 c.G1756T p.V586L GCAGTCGTATTCA 95 3 0.03 131 0 0 95 41 0 0.00 FANK1 92565 mdanderson.org 37 10 127585221 127585221 + Nonsense_Mutation SNP C C T rs202109621 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_145235 exon1 c.C10T p.Q4X GAGCCCCAGAGTA 17 5 0.29 16 0 0 4 0 0.00 DYNC2H1 79659 broad.mit.edu 37 11 103022865 103022865 + Splice_Site SNP A A T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . DYNC2H1 NM_001377 exon21 c.A2947T p.I983F CTTTAGATTTTGC 86 13 0.15 102 5 0.0490196078 246 0 0 CKAP4 10970 mdanderson.org 37 12 106633037 106633037 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_006825 exon2 c.C1574A p.P525H TGAGGAGGCAGAC 52 3 0.06 46 0 0 188 0 0.00 KNTC1 9735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 123057483 123057483 + Splice_Site SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_014708 exon25 c.2020-1G>A . GTTTTAGAAAGAT 85 26 0.31 81 0 0 2 0 0.00 MIPEP 4285 broad.mit.edu 37 13 24436484 24436484 + Missense_Mutation SNP T T C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . MIPEP NM_005932 exon9 c.A1010G p.E337G ATCATCTCAAAAT 426 5 0.01 510 0 0 53 27 0 0.00 . 0 broad.mit.edu 37 14 19857036 19857036 + RNA SNP A A G rs374719458 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . ATAATAAAGTTCA 54 4 0.07 67 0 0 0 0 PPP1R36 145376 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 65054073 65054073 + Missense_Mutation SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_172365 exon10 c.G873A p.M291I ACGCATGACTTTT 101 26 0.26 68 0 0 4 2 0.50 VRTN 55237 mdanderson.org 37 14 74823869 74823869 + Missense_Mutation SNP T T C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_018228 exon2 c.T383C p.V128A CCAAAGTGATGCT 45 3 0.07 37 0 0 16 0 0.00 HERC2P2 0 broad.mit.edu 37 15 23283044 23283044 + RNA SNP T T C rs373395896 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . CTGTGCTCATCTT 2 2 1.00 11 0 0 60 0 0.00 SKOR1 390598 mdanderson.org 37 15 68125019 68125019 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001258024 exon13 c.G2446T p.D816Y GTCAGAGGTAAGA 36 3 0.08 43 0 0 0 0 CSPG4 1464 mdanderson.org 37 15 75968620 75968620 + Silent SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001897 exon10 c.G6240A p.V2080V GCGCGGCACACTG 12 2 0.17 30 0 0 3 0 0.00 CHRNB4 1143 mdanderson.org 37 15 78922241 78922241 + Silent SNP G G T rs141876090 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_000750 exon5 c.C406A p.R136R TGGACCGGACTAT 21 2 0.10 28 0 0 16 0 0.00 ZNF785 146540 broad.mit.edu 37 16 30594036 30594036 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . ZNF785 NM_152458 exon3 c.C1063A p.L355M CTTCCAGGGCGGT 44 3 0.07 53 0 0 30 8 0 0.00 TMEM231 79583 mdanderson.org 37 16 75590079 75590079 + Silent SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001077416 exon1 c.C91A p.R31R TCGACCGGGTGAG 16 2 0.13 25 1 0.04 4 0 0.00 RAI1 10743 mdanderson.org 37 17 17697105 17697105 + Silent SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_030665 exon3 c.G843A p.Q281Q GCAGCAGCAGCAG 78 4 0.05 90 2 0.0222222222 0 0 TBC1D3P1-DHX40P1 0 broad.mit.edu 37 17 58054437 58054438 + RNA INS - - A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . CTTACAGAAAAAA 10 2 0.20 16 0 0 0 0 TJP3 27134 mdanderson.org 37 19 3746030 3746030 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001267561 exon16 c.G1988T p.S663I CCGACAGCCCCTC 77 4 0.05 103 0 0 43 0 0.00 ADAMTS10 81794 mdanderson.org 37 19 8665878 8665878 + Silent SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_030957 exon6 c.C744T p.D248D CATCTTGTCAGCC 67 4 0.06 64 0 0 0 0 ILVBL 10994 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 15230298 15230298 + Missense_Mutation SNP C C T rs149721143 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_006844 exon8 c.G845A p.R282Q TTGGCCCGGCTCA 209 11 0.05 237 0 0 0 70 2 0.03 HSH2D 84941 broad.mit.edu 37 19 16268133 16268133 + Silent SNP T T G novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . HSH2D NM_032855 exon8 c.T588G p.L196L CCCTCTTGGAGAG 104 6 0.06 137 7 0.0510948905 16 10 0 0.00 ZNF676 163223 ucsc.edu 37 19 22363172 22363172 + Silent SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . ZNF676 NM_001001411 exon3 c.C1347T p.Y449Y ACATTTGTAGGGT 62 5 0.08 78 5 0.0641025641 146 58 9 0.16 RHPN2 85415 mdanderson.org 37 19 33517507 33517507 + Missense_Mutation SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d RHPN2,face,carcinoma,0,2 RHPN2 NM_033103 exon3 c.G217A p.V73M GCCGCACTTGCTC 21 2 0.10 29 0 0 0 2 34 0 0.00 CIC 23152 broad.mit.edu 37 19 42795827 42795828 + Frame_Shift_Ins INS - - C rs374527943 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . CIC NM_015125 exon11 c.2816_2817insC p.G939fs GGGCCGGCCAGCC 87 10 0.11 123 0 0 249 28 0 0.00 APOC1P1 0 broad.mit.edu 37 19 45431267 45431268 + RNA INS - - A rs200256644 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . CAGATTGAAAAAA 6 2 0.33 7 0 0 0 0 MARK4 57787 broad.mit.edu 37 19 45801078 45801078 + Silent SNP T T G novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d MARK4_ENST00000262891,NS,carcinoma,+2,2 MARK4 NM_001199867 exon15 c.T1743G p.G581G AGGGGGTGGGGGT 28 7 0.25 40 7 0.175 132 2 3 2 0.67 KCNJ14 3770 broad.mit.edu 37 19 48967637 48967637 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . KCNJ14 NM_013348 exon3 c.C914T p.P305L TCGAGGGGATGGT 94 4 0.04 122 0 0 28 2 0 0.00 PLEKHA4 57664 mdanderson.org 37 19 49362295 49362295 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001161354 exon8 c.C794A p.P265H GCAGGGGGTGCTG 36 3 0.08 33 2 0.0606060606 11 0 0.00 KCNC3 3748 mdanderson.org 37 19 50831677 50831677 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_004977 exon1 c.C663A p.D221E GCCTCCGTCGTGG 10 2 0.20 13 0 0 0 0 MYCN 4613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 16085979 16085979 + Missense_Mutation SNP C C A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_005378 exon3 c.C1155A p.N385K CAGAAACCACAAC 126 31 0.25 125 0 0 662 204 0.31 SPRED2 200734 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 65571938 65571938 + Missense_Mutation SNP C C T rs201064965 TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d SPRED2,NS,carcinoma,+1,1 SPRED2 NM_181784 exon2 c.G119A p.R40H CCGACGCGACTGA 151 8 0.05 127 0 0 1 1 203 17 0.08 RGPD8 727851 hgsc.bcm.edu 37 2 113147115 113147115 + Missense_Mutation SNP A A C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d RGPD8_ENST00000302558,NS,carcinoma,+1,2 RGPD8_ENST00000302558 NM_001164463 exon20 c.T3407G p.F1136C TCAGAGAAATCAC 40 6 0.15 33 0 0 1 2 21 8 0.38 DBI 1622 mdanderson.org 37 2 120129857 120129857 + Missense_Mutation SNP A A G novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001178017 exon4 c.A410G p.N137S ACATCAACAAAGT 51 3 0.06 37 0 0 707 0 0.00 DLX2 1746 broad.mit.edu 37 2 172967030 172967030 + Silent SNP G G C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . DLX2 NM_004405 exon1 c.C237G p.G79G GCCCCCGCCGCCG 108 13 0.12 98 12 0.1224489796 29 1 0 0.00 IHH 3549 mdanderson.org 37 2 219925070 219925070 + Silent SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_002181 exon1 c.G120A p.P40P GCGTGGCGGTCGC 48 3 0.06 55 0 0 2 0 0.00 CHD6 84181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 40033237 40033237 + Missense_Mutation SNP T T C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_032221 exon37 c.A8144G p.N2715S TTCTAATTGGTGT 154 37 0.24 139 0 0 19 4 0.21 ADNP 23394 broad.mit.edu 37 20 49508788 49508788 + Silent SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . ADNP NM_015339 exon5 c.C2463T p.G821G CAACACGCCAGGC 248 4 0.02 194 0 0 106 122 0 0.00 KCNG1 3755 bcgsc.ca 37 20 49621194 49621194 + Silent SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . KCNG1 NM_002237 exon3 c.C924A p.A308A CAGGATGGCCACC 80 5 0.06 74 0 0 86 9 0 0.00 ZNRF3 84133 mdanderson.org 37 22 29446448 29446448 + Missense_Mutation SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001206998 exon8 c.G2279A p.G760D TGTACGGCCTTCA 41 3 0.07 37 0 0 101 0 0.00 PLA2G6 8398 mdanderson.org 37 22 38528898 38528898 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001004426 exon7 c.C1017A p.H339Q GGCCCCGTGGGTC 39 3 0.08 59 0 0 15 0 0.00 TCF20 6942 bcgsc.ca;mdanderson.org 37 22 42606966 42606966 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . TCF20 NM_181492 exon1 c.C4346A p.T1449K GCATGTGTCTCTG 71 5 0.07 90 1 0.0111111111 164 33 0 0.00 NAT6 24142 mdanderson.org 37 3 50334945 50334945 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_012191 exon2 c.C16A p.L6M GGCTCAGAGTCAG 44 3 0.07 73 0 0 30 0 0.00 CHST2 9435 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 142839860 142839860 + Missense_Mutation SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_004267 exon2 c.C202T p.L68F CTGGTGCTCACTA 95 16 0.17 76 0 0 11 2 0.18 BMP2K 55589 mdanderson.org 37 4 79792166 79792166 + Missense_Mutation SNP C C G rs200441916 bycluster TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d BMP2K_ENST00000502871,caecum,carcinoma,0,4 BMP2K_ENST00000502871 NM_017593 exon11 c.C1461G p.H487Q GCAGCACCACCAC 11 2 0.18 24 0 0 0 4 10 0 0.00 LRBA 987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 151829586 151829586 + Missense_Mutation SNP T T G novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_006726 exon11 c.A1393C p.S465R TTGCACTTTGGAT 219 73 0.33 245 0 0 5 3 0.60 TENM3 55714 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 183609373 183609373 + Missense_Mutation SNP G G A rs147392905 bycluster;by1000genomes TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001080477 exon11 c.G2090A p.R697H CGTGTCGCTGTGA 70 23 0.33 84 0 0 0.001 6 6 1.00 PCDHB4 0 broad.mit.edu 37 5 140502496 140502496 + Missense_Mutation SNP T T A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d PCDHB4,colon,carcinoma,-1,2 PCDHB4 NM_018938 exon1 c.T916A p.L306M AAAAAATTGGATT 103 4 0.04 125 0 0 177 2 0 0 ECI2 10455 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 4133832 4133832 + Missense_Mutation SNP T T C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d ECI2_ENST00000380118,NS,malignant_melanoma,0,2 ECI2 NM_206836 exon2 c.A164G p.K55R GGATCCTTTTTCA 184 7 0.04 134 0 0 59 2 60 0 0.00 VWA7 80737 broad.mit.edu 37 6 31733784 31733784 + Missense_Mutation SNP A A C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_025258 exon16 c.T2375G p.V792G TCTGGGACCTCCA 121 33 0.27 84 32 0.380952381 2 1 0.50 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32023843 32023843 + Missense_Mutation SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_019105 exon24 c.C8252T p.S2751L CTCAGCGAGTCAG 77 19 0.25 67 0 0 5 3 0.60 FNDC1 84624 mdanderson.org 37 6 159653813 159653813 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d FNDC1,NS,carcinoma,-2,1 FNDC1 NM_032532 exon11 c.G2269T p.A757S TCCAATGCGCCAT 62 4 0.06 87 0 0 -2 1 8 0 0.00 SCIN 85477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 12644158 12644158 + Missense_Mutation SNP G G C novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001112706 exon4 c.G536C p.G179A GGTGTGGTTCCTC 138 22 0.16 97 0 0 0 0 YKT6 10652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44240804 44240804 + Missense_Mutation SNP G G A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_006555 exon1 c.G70A p.D24N GCATACGATGTGT 230 54 0.23 167 0 0 186 48 0.26 . 0 broad.mit.edu 37 7 45573979 45573979 + RNA DEL A A - novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . CAAAGCAAAAAAA 6 2 0.33 7 0 0 0 0 OR2A2 442361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 143806941 143806941 + Missense_Mutation SNP G G C rs139387901 alternate_allele TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d OR2A2,upper_arm,malignant_melanoma,0,1 OR2A2 NM_001005480 exon1 c.G266C p.R89T AGAAAAGAACCAT 245 42 0.17 226 0 0 0 1 0 0 CSMD1 64478 broad.mit.edu 37 8 3015436 3015436 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d CSMD1_ENST00000537824,NS,carcinoma,0,2 CSMD1 NM_033225 exon39 c.C5897A p.P1966Q GGAGACGGATAGT 315 5 0.02 329 0 0 1469 2 1 0 0.00 RP1L1 94137 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 10464479 10464479 + Missense_Mutation SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . RP1L1 NM_178857 exon4 c.G7129A p.A2377T CGAGTGCCTGGTC 79 13 0.16 94 1 0.0106382979 453 0 0 STC1 6781 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 23702390 23702398 + In_Frame_Del DEL TGTTGAAGT TGTTGAAGT - novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 TGTTGAAGT TGTTGAAGT Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . STC1 NM_003155 exon4 c.630_638del p.210_213del GTCTCCTGTTGAA 183 0 0.00 230 0 0 49 11 0 0.00 STC1 6781 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 23702401 23702406 + In_Frame_Del DEL GCTCGT GCTCGT - novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 GCTCGT GCTCGT Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . STC1 NM_003155 exon4 c.622_627del p.208_209del AAGTCAGCTCGTG 182 21 0.12 228 0 0 49 12 0 0.00 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 100479794 100479794 + Missense_Mutation SNP C C G rs140353201 alternate_allele TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_152564 exon24 c.C3598G p.R1200G GATACACGACATT 190 29 0.15 168 0 0 3 1 0.33 SLC52A2 79581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 145583775 145583775 + Missense_Mutation SNP C C A novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_024531 exon3 c.C623A p.A208D CTTCAGCTGCTGC 115 29 0.25 63 0 0 184 51 0.28 KIAA2026 158358 mdanderson.org 37 9 6007725 6007725 + Silent SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001017969 exon1 c.G63A p.P21P GGCCGCCGGTGGC 58 3 0.05 50 0 0 2 0 0.00 PRSS3 5646 hgsc.bcm.edu 37 9 33797828 33797828 + Missense_Mutation SNP C C T rs143209949 bycluster;byfrequency TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d PRSS3_ENST00000361005,NS,carcinoma,-1,2 PRSS3_ENST00000361005 NM_007343 exon3 c.C373T p.R125C ATCAGCCGCATCC 103 6 0.06 121 1 0.0082644628 0.001 -1 2 0 0 RECK 8434 bcgsc.ca 37 9 36037093 36037093 + Missense_Mutation SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . RECK NM_021111 exon1 c.C98T p.A33V GCAGTGCGGGTGA 22 4 0.18 24 0 0 73 18 0 0.00 TOR1B 27348 mdanderson.org 37 9 132565665 132565665 + Silent SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_014506 exon1 c.C174T p.R58R CTGCCGCGAGGAG 20 3 0.15 25 0 0 20 0 0.00 ABL1 25 mdanderson.org 37 9 133759942 133759942 + Silent SNP C C T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_007313 exon11 c.C2322T p.H774H AGGGCACAAAAGT 39 3 0.08 72 0 0 35 0 0.00 KIAA1984 84960 mdanderson.org 37 9 139700593 139700593 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001039374 exon10 c.G1012T p.D338Y ATGGAGGACTGTG 42 3 0.07 52 0 0 2 0 0.00 FAM104B 90736 mdanderson.org 37 X 55172630 55172630 + Nonsense_Mutation SNP G G A rs113263757 bycluster TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001166700 exon3 c.C238T p.Q80X AGAACTGGGGAAA 32 4 0.13 35 0 0 58 0 0.00 FAM104B 90736 mdanderson.org 37 X 55172645 55172645 + Missense_Mutation SNP C C G rs1047042 bycluster;byfrequency;alternate_allele TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . NM_001166700 exon3 c.G223C p.D75H TTGCATCGGGTTC 33 4 0.12 36 0 0 65 0 0.00 ZNF274 10782 mdanderson.org 37 19 58723675 58723675 + Missense_Mutation SNP G G T novel TCGA-2G-AAKL-01A-11D-A42Y-10 TCGA-2G-AAKL-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 613a20f3-ec26-4a16-95ef-e8781f91b5ff f69d3441-7b55-4b9a-9d83-cf6a8f2c656d . . . . . . GGTCCAGGAAGTC 48 3 0.06 59 0 0 30 0 0.00