Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CLCNKB	1188	broad.mit.edu	37	1	16383402	16383402	+	Silent	SNP	C	C	T	rs6698427	bycluster	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	CLCNKB	NM_000085	exon20	c.C2055T	p.A685A	GCCAGCCCCAAAG		372	5	0.01	512	1	0.001953125		50		2	0	0.00			
ESPNP	0	broad.mit.edu	37	1	17019432	17019433	+	RNA	INS	-	-	GC	rs138548890	bycluster;by1000genomes	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	ACGCCGTGCGCCA		6	2	0.33	5	0	0				1	0	0.00			
SERINC2	347735	broad.mit.edu	37	1	31897662	31897662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SERINC2	NM_001199038	exon4	c.A361C	p.T121P	TTTTTCACCCTGC		99	20	0.20	161	36	0.2236024845		44		11	1	0.09			
SFPQ	6421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	35656135	35656135	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SFPQ	NM_005066	exon4	c.1380delT	p.P460fs	TTTTCAGGAAGAC		356	43	0.12	395	0	0		51		456	0	0.00			
ARTN	9048	mdanderson.org	37	1	44401810	44401810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001136215	exon3	c.G130A	p.V44I	AGCAGCGTCGCAG		17	3	0.18	16	0	0				1	0	0.00			
SLC6A17	388662	mdanderson.org	37	1	110740797	110740797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001010898	exon12	c.C1915T	p.R639W	GTCCTGCGGCACT		60	4	0.07	90	0	0				3	0	0.00			
CSDE1	7812	hgsc.bcm.edu;bcgsc.ca	37	1	115262299	115262299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	CSDE1,face,carcinoma,-1,1	CSDE1	NM_001242891	exon19	c.A2255G	p.Q752R	CCATCCTGAACTT		106	6	0.06	152	0	0		-1	1	1130	0	0.00			
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	151679178	151679178	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007185	exon9	c.C955T	p.Q319X	CCTGCTGCAGGGG		94	12	0.13	126	0	0				0	0				
VANGL2	57216	mdanderson.org	37	1	160388802	160388802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_020335	exon4	c.G203T	p.W68L	ACAACTGGGGGGA		86	4	0.05	114	0	0				2	0	0.00			
ADCK3	56997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	227171330	227171332	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	AGA	AGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	ADCK3	NM_020247	exon9	c.1157_1159del	p.386_387del	GCTTCCAGAAGGT		141	18	0.13	183	0	0		77		52	0	0.00			
FMN2	56776	mdanderson.org	37	1	240256436	240256436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_020066	exon1	c.G1027T	p.G343W	GGGGCTGGGGACA		15	2	0.13	29	0	0				7	0	0.00			
RET	5979	ucsc.edu	37	10	43600502	43600502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	RET	NM_020975	exon4	c.G728A	p.C243Y	CCGTGTGCACCGT		35	4	0.11	50	0	0		916		5	0	0.00			
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56077049	56077049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001142763	exon9	c.A873G	p.I291M	CTCAGGTATGGCA		75	10	0.13	118	0	0				0	0				
ZSWIM8	23053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75558169	75558169	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIAA0913_ENST00000412131,NS,carcinoma,+2,3	KIAA0913_ENST00000412131	NM_015037	exon20	c.C4134T	p.N1378N	ATTGAACCCTAAT		64	10	0.16	88	0	0		2	3	32	6	0.19			
MUC6	4588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1027502	1027502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MUC6	NM_005961	exon17	c.G1997A	p.G666D	GTGTTACCCGTGC		66	13	0.20	118	1	0.0084745763		408		0	0				
MUC2	4583	mdanderson.org	37	11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		33	3	0.09	50	1	0.02		0	1	0	0				
KRTAP5-5	439915	bcgsc.ca	37	11	1651203	1651210	+	Frame_Shift_Del	DEL	TGTGGGGG	TGTGGGGG	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	TGTGGGGG	TGTGGGGG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	KRTAP5-5	NM_001001480	exon1	c.133_140del	p.45_47del	GGAGGCTGTGGGG		38	4	0.11	76	1	0.0131578947		86		0	0				
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1775040	1775040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001909	exon8	c.C1064A	p.T355K	TTGAGCGTGTAGT		77	10	0.13	111	0	0				4897	237	0.05			
.	159770	bcgsc.ca	37	11	27828350	27828350	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	GAGGTCGTGATCC		72	17	0.24	73	0	0				0	0				
DAK	26007	mdanderson.org	37	11	61109960	61109960	+	Missense_Mutation	SNP	G	G	T	rs200763152	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015533	exon8	c.G683T	p.R228L	TGCGCCGGATAAA		45	3	0.07	66	0	0				46	0	0.00			
THYN1	29087	broad.mit.edu	37	11	134118345	134118345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	THYN1	NM_014174	exon7	c.A665G	p.K222R	GGTTCCTTTTCCT		208	4	0.02	324	1	0.0030864198		21		188	0	0.00			
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	51685422	51685422	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_016293	exon10	c.C1468T	p.Q490X	GGTTCTGATTGTG		199	20	0.10	239	0	0				164	5	0.03			
.	0	broad.mit.edu	37	14	19850732	19850733	+	RNA	INS	-	-	A	rs369218058		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	TAGACATAAAAGT		12	6	0.50	16	3	0.1875				0	0				
DHRS2	10202	broad.mit.edu	37	14	24108495	24108495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	DHRS2	NM_182908	exon3	c.A248G	p.E83G	AGGGGGAGGGGCT		115	5	0.04	122	1	0.0081967213		78		0	0				
.	283685	broad.mit.edu	37	15	23685464	23685465	+	In_Frame_Ins	INS	-	-	TCT	rs373462853	alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	CTCCTGATCTCCT		7	3	0.43	3	0	0				0	0				
TYRO3	7301	hgsc.bcm.edu	37	15	41870083	41870083	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	TYRO3_ENST00000263798,colon,carcinoma,0,4	TYRO3_ENST00000263798	NM_006293	exon19	c.2283-1G>T	.	ACCCCAGGTATGA		73	7	0.10	63	1	0.0158730159		0	4	14	0	0.00			
SPATA5L1	79029	mdanderson.org	37	15	45694836	45694836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_024063	exon1	c.G209A	p.G70D	CGGACGGCTTTGT		17	2	0.12	24	0	0				8	0	0.00			
SRRM2	23524	ucsc.edu	37	16	2817298	2817298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SRRM2	NM_016333	exon11	c.G6769T	p.A2257S	AACCTGGCTGACT		50	5	0.10	59	0	0		263		352	13	0.04			
POLR3E	55718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	22326410	22326410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001258033	exon9	c.G523A	p.V175M	CCGCAGGTGCGGT		101	7	0.07	115	0	0				15	8	0.53			
PIEZO1	9780	mdanderson.org	37	16	88788681	88788681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001142864	exon36	c.G4900T	p.G1634C	AGGCACCAGCCTC		40	3	0.08	46	0	0				20	0	0.00			
ZNF778	197320	hgsc.bcm.edu	37	16	89294051	89294051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001201407	exon7	c.A1355G	p.K452R	CGTGTAAGGACTG		84	4	0.05	128	0	0				1	0	0.00			
ZNF276	92822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89789049	89789049	+	Missense_Mutation	SNP	C	C	A	rs202152544	by1000genomes;alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	ZNF276	NM_001113525	exon2	c.C316A	p.P106T	GAGAGGCCATCCG		49	10	0.20	76	1	0.0131578947		70		9	0	0.00			
KIF1C	10749	hgsc.bcm.edu;broad.mit.edu	37	17	4925727	4925727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIF1C,NS,carcinoma,0,1	KIF1C	NM_006612	exon22	c.G2351T	p.R784L	TGTGTCGCACCTA		69	3	0.04	87	0	0		0	1	462	0	0.00			
LLGL1	3996	mdanderson.org	37	17	18140236	18140236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004140	exon13	c.G1594A	p.A532T	GTGGTGGCTGGCA		50	3	0.06	60	0	0				50	0	0.00			
.	0	broad.mit.edu	37	17	20319971	20319971	+	RNA	SNP	G	G	A	rs71263795		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	CATTACGCTTGAT		29	3	0.10	43	0	0				0	0				
DNAH17	8632	mdanderson.org	37	17	76457693	76457693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_173628	exon58	c.C9272A	p.A3091D	TTCTCGGCCTCGA		42	3	0.07	72	0	0				1	0	0.00			
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54424172	54424172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_052834	exon15	c.G2348A	p.S783N	GGTCCAGCAAATC		102	15	0.15	167	0	0				0	0				
C19orf24	55009	mdanderson.org	37	19	1277209	1277209	+	Silent	SNP	C	C	T	rs138739305	bycluster;by1000genomes	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_017914	exon2	c.C309T	p.Y103Y	GCGATACGGCCTC		44	3	0.07	74	0	0	0.001			260	0	0.00			
MAG	4099	mdanderson.org	37	19	35786622	35786622	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	MAG_ENST00000392213,caecum,carcinoma,+1,4	MAG_ENST00000392213	NM_080600	exon4	c.G153T	p.R51R	GCTGCGGCCCGCT		37	3	0.08	59	0	0		1	4	0	0				
MLL4	0	broad.mit.edu;bcgsc.ca	37	19	36213928	36213928	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MLL4	NM_014727	exon6	c.2754delC	p.V918fs	GAGTGTCCCGTCA		68	8	0.12	90	0	0		229		11	0	0.00			
DPF1	8193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38709684	38709684	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001135155	exon4	c.C394T	p.L132L	TCTTCAGGGGTGC		67	8	0.12	68	0	0				43	8	0.19			
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	38976839	38976839	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001042723	exon34	c.G5544T	p.L1848L	CACCCTGCTGGTA		124	5	0.04	153	0	0				0	0				
EGLN2	112398	mdanderson.org	37	19	41306775	41306775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_080732	exon2	c.G298T	p.V100F	GCGCTGGTCACCA		44	3	0.07	64	0	0				157	0	0.00			
FAM110C	642273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	45630	45630	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001077710	exon1	c.C756T	p.S252S	GGCGACGCTCACG		66	11	0.17	101	0	0				0	0				
GDF7	151449	broad.mit.edu	37	2	20870840	20870840	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	GDF7	NM_182828	exon2	c.C1008G	p.G336G	CGGGGGCGCGGGC		31	8	0.26	27	3	0.1111111111		21		0	0				
CCDC164	92749	mdanderson.org	37	2	26672887	26672887	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_145038	exon12	c.G1533A	p.L511L	CAAGCTGCTGAGC		45	3	0.07	65	0	0				3	0	0.00			
GPAT2	150763	mdanderson.org	37	2	96690240	96690240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_207328	exon15	c.G1604A	p.G535D	GTGAGGCCTGGGC		41	3	0.07	63	0	0				12	0	0.00			
SCN7A	6332	broad.mit.edu	37	2	167328934	167328934	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SCN7A	NM_002976	exon5	c.C465T	p.Y155Y	AAATGTGTAAATT		449	10	0.02	626	3	0.0047923323		410		0	0				
SMARCAL1	50485	broad.mit.edu	37	2	217297481	217297481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SMARCAL1	NM_014140	exon8	c.G1375T	p.D459Y	GCTGACGACATGG		172	5	0.03	239	0	0		93		69	0	0.00			
VIL1	7429	mdanderson.org	37	2	219289058	219289058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007127	exon3	c.G134A	p.C45Y	GTGACTGCTACAT		54	3	0.06	57	0	0				0	0				
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31827688	31827688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_016583	exon4	c.C400G	p.P134A	ACCATCCCTCTCG		92	11	0.12	125	0	0				0	0				
TGM2	7052	ucsc.edu;mdanderson.org	37	20	36775125	36775125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	TGM2	NM_198951	exon6	c.T853C	p.C285R	CTGTGCAGGCCAC		45	4	0.09	78	0	0		88		27	0	0.00			
PTPN1	5770	bcgsc.ca;mdanderson.org	37	20	49177939	49177939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	PTPN1	NM_002827	exon2	c.G103A	p.A35T	AGAGTGGCCAAGC		99	5	0.05	156	0	0		36		30	0	0.00			
FAM65C	140876	mdanderson.org	37	20	49226132	49226132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_080829	exon7	c.G542A	p.R181H	AGGCTGCGGCCCA		16	2	0.13	19	0	0				1	0	0.00			
KCNQ2	3785	mdanderson.org	37	20	62038606	62038606	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_172107	exon17	c.C2010A	p.Y670X	GCTGTGGTACGGC		23	3	0.13	17	0	0				1	0	0.00			
.	0	broad.mit.edu	37	22	18846113	18846113	+	RNA	SNP	C	C	T	rs75891150		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	CCTCCACGCACTG		93	4	0.04	108	0	0				3	0	0.00			
RAB36	9609	mdanderson.org	37	22	23503703	23503703	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004914	exon11	c.G954T	p.P318P	GAGTCCGCCCGAG		24	2	0.08	38	0	0				9	0	0.00			
FAM211B	388886	mdanderson.org	37	22	24981891	24981891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_207644	exon4	c.G911T	p.G304V	CCCAGCCCAGCAG		23	3	0.13	14	0	0				21	0	0.00			
RPL3	6122	mdanderson.org	37	22	39709644	39709644	+	Missense_Mutation	SNP	G	G	T	rs375229574	alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_000967	exon8	c.C1042A	p.R348S	CCTTGCGGAGGGT		55	3	0.05	66	0	0				2419	1	0.00			
STAC	6769	mdanderson.org	37	3	36587768	36587768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_003149	exon11	c.T1196C	p.L399P	ATGTACTAGAAAA		58	3	0.05	108	0	0				1	0	0.00			
MIR26A1	407015	mdanderson.org	37	3	38010898	38010898	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	.	.	.	.	GCCGTGGCCTCGT		52	3	0.06	75	0	0				0	0				
TWF2	11344	mdanderson.org	37	3	52264021	52264021	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007284	exon7	c.G675A	p.L225L	GGAGGGCAGCTGG		18	2	0.11	49	0	0				343	0	0.00			
FLNB	2317	ucsc.edu	37	3	58145363	58145363	+	Missense_Mutation	SNP	A	A	C	rs202222289		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	FLNB,NS,carcinoma,0,1	FLNB	NM_001164317	exon43	c.A7064C	p.H2355P	AGGTGCACAGCCC		26	3	0.12	31	3	0.0967741935		430	1	116	18	0.16			
LRRC66	339977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	52883329	52883329	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001024611	exon1	c.A451T	p.K151X	GCACCTTCAGCAA		157	44	0.28	270	0	0				0	0				
KIT	3815	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599338	55599338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIT,NS,malignant_melanoma,0,44	KIT	NM_000222	exon17	c.A2464T	p.N822Y	GATTCTAATTATG		83	19	0.23	107	0	0		7396	44	83	58	0.70			
PHF15	23338	mdanderson.org	37	5	133914249	133914249	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015288	exon11	c.C1615T	p.Q539X	TCGGTGCAGATCA		42	3	0.07	77	0	0				77	0	0.00			
CD14	929	mdanderson.org	37	5	140011945	140011945	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001174105	exon3	c.C624T	p.G208G	GCGTTCGCCCAGT		38	3	0.08	86	0	0				830	0	0.00			
TULP1	7287	mdanderson.org	37	6	35471611	35471611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_003322	exon12	c.G1127T	p.G376V	CGGTTCCCCAGGA		37	3	0.08	40	0	0				0	0				
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46661672	46661672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001168359	exon1	c.G5807A	p.C1936Y	CCATGTGTACTGA		184	19	0.10	258	0	0				7	1	0.14			
RADIL	55698	mdanderson.org	37	7	4845284	4845284	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_018059	exon10	c.C2203T	p.L735L	GAGTCAGCAGCCG		49	3	0.06	66	0	0				14	0	0.00			
HOXA11	0	broad.mit.edu	37	7	27224964	27224964	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	HOXA11	.	.	.	.	CCTTTTCCCCCCC		6	2	0.33	10	0	0		29		0	0				
DDC	1644	broad.mit.edu	37	7	50611732	50611732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	DDC	NM_001082971	exon2	c.G52A	p.A18T	AGTTGGCCATGTA		272	5	0.02	345	1	0.0028985507		100		0	0				
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51096848	51096848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015198	exon10	c.G1945C	p.D649H	CTTTGTCTTTCAC		197	43	0.22	248	0	0				0	0				
MAGI2	9863	broad.mit.edu	37	7	77797419	77797419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MAGI2	NM_012301	exon15	c.A2410T	p.I804F	CTCCAATCAAAAT		172	12	0.07	206	13	0.0631067961		246		0	0				
PPAPDC1B	84513	hgsc.bcm.edu;mdanderson.org	37	8	38124886	38124886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_032483	exon5	c.G362A	p.R121H	AAGCAGCGGTAGA		122	5	0.04	188	0	0				54	0	0.00			
MAFA	389692	broad.mit.edu	37	8	144511954	144511959	+	In_Frame_Del	DEL	TGGTGG	TGGTGG	-	rs141816879	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	TGGTGG	TGGTGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MAFA	NM_201589	exon1	c.618_623del	p.206_208del	CCGCCATGGTGGT		6	2	0.33	6	0	0		9		1	0	0.00			
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414230	20414230	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004529	exon5	c.A614T	p.E205V	GGTTTTTCCTTGT		185	36	0.19	271	0	0				3	3	1.00			
FAM205B	0	broad.mit.edu	37	9	34834814	34834814	+	RNA	SNP	C	C	G	rs525378	by2hit2allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	FAM205B	.	.	.	.	ATTTGGCGAAAGT		100	5	0.05	132	1	0.0075757576		10		0	0				
COL27A1	85301	mdanderson.org	37	9	117002739	117002739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_032888	exon21	c.C2807T	p.P936L	GCCTGCCGGGACC		40	3	0.08	45	0	0				2	0	0.00			
PIP5KL1	138429	mdanderson.org	37	9	130689596	130689596	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001135219	exon6	c.C574A	p.R192R	CCACCCGCAGACT		49	3	0.06	68	0	0				0	0				
OTUD5	55593	mdanderson.org	37	X	48781269	48781269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_017602	exon7	c.G1339A	p.E447K	TCCACTCCTCCAG		43	3	0.07	80	0	0				121	0	0.00			
SLC25A5	292	mdanderson.org	37	X	118603654	118603654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001152	exon2	c.G142T	p.D48Y	ACTGCAGATAAGC		45	3	0.07	89	0	0				301	0	0.00			
ATP6AP1	537	mdanderson.org	37	X	153661316	153661316	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001183	exon5	c.C597T	p.N199N	AGGCAACGGTGAG		50	3	0.06	60	0	0				274	0	0.00