Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV GLTPD1 80772 mdanderson.org 37 1 1262874 1262874 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001029885 exon3 c.C376T p.R126C GGCCTGCGTACCA 23 3 0.13 21 0 0 22 0 0.00 KIAA1751 85452 mdanderson.org 37 1 1920330 1920330 + Silent SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001080484 exon3 c.C150T p.S50S TTACCTGCTGTGT 19 2 0.11 23 0 0 0 0 KIF1B 23095 broad.mit.edu 37 1 10397530 10397530 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . KIF1B NM_015074 exon29 c.G3223T p.V1075L TTCCGAGTAACAG 197 4 0.02 167 0 0 242 71 0 0.00 MFN2 9927 broad.mit.edu 37 1 12069691 12069691 + Silent SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . MFN2 NM_014874 exon18 c.C2112T p.D704D AGTTGACGTCACC 164 4 0.02 144 1 0.0069444444 83 155 0 0.00 NASP 4678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 46073158 46073158 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_002482 exon6 c.C575T p.A192V AATCTGCAGAGGA 196 47 0.24 179 0 0 531 151 0.28 C1orf173 127254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 75038768 75038768 + Missense_Mutation SNP G G C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 C1orf173,NS,malignant_melanoma,0,1 C1orf173 NM_001002912 exon14 c.C2626G p.P876A TTTCAGGAGCCTC 103 21 0.20 109 0 0 0 1 0 0 ZNF644 84146 broad.mit.edu 37 1 91403170 91403170 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . ZNF644 NM_201269 exon4 c.C3560A p.A1187D GAAATAGCAGAAT 192 4 0.02 172 0 0 120 81 0 0.00 VCAM1 7412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 101186170 101186170 + Missense_Mutation SNP A A T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001078 exon2 c.A203T p.N68I CACTGAATGGGAA 196 50 0.26 189 0 0 12 0 0.00 GPSM2 29899 ucsc.edu 37 1 109461327 109461327 + Silent SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . GPSM2 NM_013296 exon12 c.G1356A p.G452G GAAGGGGAAAAAA 260 2 0.01 221 0 0 56 52 9 0.17 rescued with RNA-seq RPTN 126638 broad.mit.edu 37 1 152127961 152127961 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 RPTN,NS,carcinoma,-1,2 RPTN NM_001122965 exon3 c.G1614A p.M538I TCTGTCCATCTGA 226 6 0.03 178 2 0.0112359551 123 2 0 0 LOR 4014 broad.mit.edu 37 1 153233515 153233515 + Silent SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . LOR NM_000427 exon2 c.C90T p.G30G CAGCGGCGGTGGT 81 3 0.04 74 0 0 19 0 0 NCOA4 8031 broad.mit.edu 37 10 51585536 51585536 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . NCOA4 NM_001145261 exon9 c.G1683T p.K561N AAAGAAGATGGGC 62 5 0.08 65 0 0 58 265 0 0.00 LRRTM3 347731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 68686864 68686864 + Missense_Mutation SNP T T A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_178011 exon2 c.T190A p.L64I GGTTGCTTAGGTT 69 11 0.16 95 0 0 0 0 AP2A2 161 mdanderson.org 37 11 993799 993799 + Silent SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001242837 exon13 c.C1599T p.C533C CCTGTGCAGCGTC 31 3 0.10 27 0 0 133 0 0.00 C11orf42 160298 broad.mit.edu 37 11 6231188 6231188 + Missense_Mutation SNP A A C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . C11orf42 NM_173525 exon2 c.A181C p.T61P GCCCATACCCGCC 71 16 0.23 93 25 0.2688172043 35 1 0 0.00 RAB3IL1 5866 mdanderson.org 37 11 61669973 61669973 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 RAB3IL1,NS,carcinoma,+1,2 RAB3IL1 NM_013401 exon8 c.C940A p.R314R GGATTCGGTGGCG 57 3 0.05 65 0 0 1 2 24 0 0.00 BSCL2 26580 mdanderson.org 37 11 62458260 62458260 + Missense_Mutation SNP T T C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001130702 exon8 c.A818G p.Q273R CATACCTGTCCCT 53 4 0.08 74 0 0 244 0 0.00 CDC42EP2 10435 broad.mit.edu;mdanderson.org 37 11 65088569 65088569 + Missense_Mutation SNP G G T rs377014949 alternate_allele TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . CDC42EP2 NM_006779 exon2 c.G200T p.G67V TGCCGGGGACCAT 149 6 0.04 147 0 0 13 2 0 0.00 IGSF9B 22997 mdanderson.org 37 11 133805639 133805639 + Silent SNP C C G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_014987 exon7 c.G840C p.V280V GATGCGCACCCTC 38 3 0.08 56 0 0 2 0 0.00 CACNA1C 775 broad.mit.edu 37 12 2800309 2800309 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . CACNA1C NM_199460 exon50 c.G6610T p.G2204C GCGCGGGGTCGAC 209 4 0.02 128 0 0 1023 54 0 0.00 SYCP3 50511 mdanderson.org 37 12 102127445 102127445 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_153694 exon6 c.C361A p.L121I GGTTAAGCTTCTG 44 3 0.07 45 0 0 259 0 0.00 PXMP2 5827 mdanderson.org 37 12 133277883 133277883 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_018663 exon4 c.G447A p.W149X CTTCTGGCCGGCG 45 3 0.07 35 0 0 86 2 0.02 ATP8A2 51761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 13 26436476 26436476 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_016529 exon33 c.G3113A p.W1038X TGACCTGGCTGGT 110 42 0.38 115 0 0 1 0 0.00 KBTBD6 89890 mdanderson.org 37 13 41705572 41705572 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_152903 exon1 c.G1076A p.C359Y GGATCACAGCAGA 208 15 0.07 181 2 0.0110497238 48 0 0.00 EMC9 51016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24608338 24608338 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_016049 exon6 c.C508A p.Q170K GGTGCTGGTGGGC 268 47 0.18 196 0 0 56 7 0.13 DDHD1 0 broad.mit.edu 37 14 53513556 53513556 + Missense_Mutation SNP A A G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . DDHD1 NM_001160148 exon13 c.T2633C p.L878P AGAAAAAGGGCAA 443 4 0.01 390 2 0.0051282051 202 86 0 0.00 CDKN3 1033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 54884583 54884583 + Missense_Mutation SNP C C A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_005192 exon7 c.C466A p.L156I CTCCTACTATACC 186 11 0.06 150 0 0 94 13 0.14 YLPM1 56252 broad.mit.edu 37 14 75230979 75230979 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . YLPM1 NM_019589 exon1 c.G787T p.E263X CAGCAAGAGCCTT 125 5 0.04 93 0 0 298 84 1 0.01 BAHD1 22893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40751683 40751684 + Nonsense_Mutation DNP GG GG TT novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 GG GG Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_014952 exon2 c.G1021T p.QE340H* TAAGCAGGAACTG 154 33 0.21 96 0 0 117 0 0.00 VPS13C 54832 broad.mit.edu 37 15 62254066 62254066 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . VPS13C NM_020821 exon35 c.C3630A p.A1210A CTCTTTGGCTGTC 102 4 0.04 86 0 0 506 6 0 0.00 MAN2C1 4123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75656927 75656927 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001256494 exon5 c.G502A p.E168K TCTTCTCAGGGTC 96 16 0.17 86 0 0 64 10 0.16 SLCO3A1 28232 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 92671632 92671632 + Silent SNP T T C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_013272 exon7 c.T1425C p.C475C TAACTGTGAATGC 148 6 0.04 111 0 0 16 2 0.13 DDX11L9 0 broad.mit.edu 37 15 102516768 102516770 + RNA DEL CAA CAA - novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 CAA CAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . . . . . AGAAACCAACAGT 8 2 0.25 9 0 0 14 0 0.00 HMOX2 3163 broad.mit.edu;mdanderson.org 37 16 4559436 4559436 + Silent SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . HMOX2 NM_001127205 exon5 c.C720T p.A240A CCAGGCCGGCTCC 73 4 0.05 78 0 0 22 205 0 0.00 EEF2K 29904 broad.mit.edu 37 16 22291564 22291564 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . EEF2K NM_013302 exon17 c.G1935T p.L645L TGCCCTGGAGATG 87 3 0.03 109 0 0 142 22 0 0.00 EARS2 124454 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23540942 23540942 + Silent SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . EARS2 NM_001083614 exon7 c.C1233T p.C411C CAGGCGGCAAATG 89 24 0.27 126 1 0.0079365079 26 68 24 0.35 ZNF629 23361 mdanderson.org 37 16 30794137 30794137 + Missense_Mutation SNP G G T rs189318984 by1000genomes;alternate_allele TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001080417 exon3 c.C1512A p.H504Q GCGGACGTGGGTA 36 3 0.08 61 1 0.0163934426 0 0 . 0 broad.mit.edu 37 16 32077601 32077601 + RNA SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . . . . . CTCCAGGGACAAC 242 6 0.02 287 1 0.0034843206 8 8 1.00 rescued with RNA-seq MIR548AE2 100616339 hgsc.bcm.edu 37 16 48295639 48295639 + RNA SNP C C G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . . . . . ATATAACTCTTGC 37 16 0.43 39 0 0 0 0 KRTAP4-11 653240 mdanderson.org 37 17 39274238 39274238 + Silent SNP A A G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_033059 exon1 c.T330C p.C110C GGGGCGACAGCAG 24 3 0.13 25 0 0 0 0 PYY 5697 mdanderson.org 37 17 42030492 42030492 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_004160 exon6 c.G254A p.R85H ACGGGGCGGTCCT 121 6 0.05 138 0 0 356 0 0.00 . 0 bcgsc.ca 37 18 13152605 13152605 + RNA SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . . . . . TCTATGCCAAGAA 36 4 0.11 38 0 0 0 0 CCDC178 374864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 30913247 30913247 + Missense_Mutation SNP G G C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001105528 exon9 c.C770G p.A257G ATCTTTGCATTTG 131 38 0.29 167 0 0 0 0 SALL3 27164 bcgsc.ca 37 18 76754583 76754583 + Silent SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 SALL3,NS,carcinoma,0,1 SALL3 NM_171999 exon2 c.C2592T p.S864S CAAGTCCGTGGAG 46 4 0.09 67 0 0 162 1 0 0 ARHGEF1 0 broad.mit.edu 37 19 42410875 42410875 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . ARHGEF1 NM_199002 exon28 c.C2721T p.C907C ATTTTGCCGCCTG 255 6 0.02 155 1 0.0064516129 95 130 0 0.00 ZNF836 162962 mdanderson.org 37 19 52671321 52671321 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001102657 exon3 c.C5A p.A2D GTAAGAGCCATCC 55 3 0.05 46 0 0 14 0 0.00 RAB10 10890 broad.mit.edu 37 2 26257554 26257554 + Missense_Mutation SNP T T C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . RAB10 NM_016131 exon1 c.T77C p.L26P GCGTCCTTTTTCG 254 3 0.01 214 0 0 14 327 0 0.00 SCN9A 6335 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 167055703 167055703 + Missense_Mutation SNP C C T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_002977 exon27 c.G5413A p.A1805T GTTTTGCTATGAG 225 9 0.04 230 0 0 3 0 0.00 VPS16 64601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 2843984 2843984 + Nonsense_Mutation SNP C C G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_022575 exon15 c.C1416G p.Y472X CGAGTACTTGCGC 98 23 0.23 67 0 0 120 9 0.08 KIAA0930 23313 bcgsc.ca 37 22 45607914 45607914 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . KIAA0930 NM_015264 exon2 c.C154A p.R52R CCTGCCGGGGAGC 53 4 0.08 60 1 0.0166666667 43 53 0 0.00 PANX2 56666 broad.mit.edu 37 22 50617594 50617594 + Missense_Mutation SNP G G C rs376326556 alternate_allele TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . PANX2 NM_052839 exon3 c.G1922C p.G641A ACGGGGGCCCCCG 87 20 0.23 115 6 0.052173913 69 7 2 0.29 CCRL1 51554 mdanderson.org 37 3 132321047 132321047 + RNA SNP C C A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . . . . . AAAAAACAAACTA 246 14 0.06 337 7 0.0207715134 1 0 0.00 SHOX2 6474 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 157823772 157823772 + Missense_Mutation SNP C C G rs376757024 TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_003030 exon1 c.G42C p.Q14H CACTTTCTGGTCA 273 14 0.05 354 0 0 0 0 IQCJ 654502 broad.mit.edu 37 3 158983108 158983108 + Silent SNP T T C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . IQCJ NM_001042705 exon5 c.T396C p.L132L CTACCTTGACCAG 142 5 0.04 143 1 0.006993007 28 0 0 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55602664 55602664 + Missense_Mutation SNP G G C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 KIT,caecum,carcinoma,0,3 KIT NM_000222 exon18 c.G2485C p.A829P TTACAGGCTCGAC 77 23 0.30 90 0 0 0 3 603 242 0.40 LRBA 987 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 151837605 151837605 + Missense_Mutation SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_006726 exon7 c.C842T p.S281L CCTTTTGACTTTA 194 12 0.06 232 0 0 14 1 0.07 SNX25 83891 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 186231964 186231964 + Missense_Mutation SNP C C A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . SNX25 NM_031953 exon7 c.C846A p.S282R TCAAAGCCAGAAG 169 41 0.24 208 1 0.0048076923 100 21 2 0.10 UBE2QL1 134111 mdanderson.org 37 5 6449044 6449044 + Missense_Mutation SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001145161 exon1 c.G38A p.R13H GCGACCGCTTCAT 53 3 0.06 50 0 0 2 0 0.00 MAP1B 4131 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 71489724 71489724 + Missense_Mutation SNP C C G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . MAP1B NM_005909 exon5 c.C542G p.A181G ATCCTGCCAACAA 73 17 0.23 82 0 0 243 12 4 0.33 DHFR 1719 hgsc.bcm.edu;broad.mit.edu 37 5 79950296 79950296 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_000791 exon1 c.C13A p.L5I AGTTTAGCGAACC 128 6 0.05 160 0 0 1 0 0.00 SLC23A1 9963 mdanderson.org 37 5 138714360 138714360 + Missense_Mutation SNP C C T rs115023155 by1000genomes TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_152685 exon10 c.G1099A p.E367K TGCCTTCGGTGAA 103 5 0.05 132 0 0 0.006 1 0 0.00 ADAM19 8728 broad.mit.edu 37 5 156936422 156936422 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . ADAM19 NM_033274 exon9 c.C792A p.T264T CCCGTGGGTCCAC 158 4 0.03 162 0 0 216 4 0 0.00 MSX2 4488 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 174156363 174156363 + Missense_Mutation SNP G G C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . MSX2 NM_002449 exon2 c.G581C p.R194T ACCGAAGGGCCAA 174 24 0.14 191 0 0 24 87 23 0.26 POU5F1 5460 broad.mit.edu 37 6 31138067 31138067 + Missense_Mutation SNP A A G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . POU5F1 NM_002701 exon1 c.T331C p.S111P CCGGGGAGGCCCC 118 3 0.03 95 3 0.0315789474 25 5002 4 0.00 LRFN2 57497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 40360629 40360629 + Missense_Mutation SNP C C A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_020737 exon3 c.G1423T p.A475S CGAAGGCCTTGTT 61 16 0.26 69 0 0 0 0 ZNF451 26036 broad.mit.edu 37 6 57013354 57013354 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . ZNF451 NM_001031623 exon10 c.G2471T p.G824V ATTTTGGATCTGA 241 5 0.02 227 1 0.0044052863 181 64 0 0.00 KLHL32 114792 hgsc.bcm.edu 37 6 97424037 97424037 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_052904 exon3 c.G188T p.C63F CAGCATGCAGTGA 77 4 0.05 89 0 0 0 0 PBOV1 59351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 138539259 138539259 + Missense_Mutation SNP C C A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_021635 exon1 c.G274T p.G92C AGGAACCTTTCAT 189 36 0.19 153 0 0 0 0 INHBA-AS1 285954 hgsc.bcm.edu 37 7 41797988 41797988 + RNA SNP A A G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . . . . . TTTTCCATTCATT 13 5 0.38 9 0 0 0 0 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 77755017 77755017 + Missense_Mutation SNP C C G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_012301 exon20 c.G3561C p.R1187S CCTCATCCTCCCA 272 24 0.09 176 0 0 0 0 KPNA7 402569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 98792933 98792933 + Missense_Mutation SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001145715 exon4 c.C313T p.P105S TCAGAGGGGGGTT 110 13 0.12 83 0 0 0 0 KLRG2 346689 mdanderson.org 37 7 139168165 139168165 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_198508 exon1 c.C224A p.P75H GACCCGGGGCGAG 22 2 0.09 14 0 0 88 0 0.00 RP1L1 94137 broad.mit.edu 37 8 10465179 10465179 + Silent SNP A A T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . RP1L1 NM_178857 exon4 c.T6429A p.P2143P TGACTCAGGCTGG 178 8 0.04 148 1 0.0067567568 453 0 0 KIAA1456 57604 broad.mit.edu 37 8 12879537 12879537 + Missense_Mutation SNP A A G novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . KIAA1456 NM_020844 exon5 c.A1349G p.K450R AGAAAAAGAGAGG 181 5 0.03 155 1 0.0064516129 20 3 0 0.00 PHYHIP 9796 broad.mit.edu 37 8 22079280 22079280 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . PHYHIP NM_014759 exon5 c.C579A p.G193G GGGCTGGCCCGTG 147 6 0.04 106 1 0.0094339623 24 3 0 0.00 FAM83H 286077 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 144810755 144810755 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_198488 exon5 c.C876A p.A292A CATGCGGGCCAGG 56 5 0.09 48 0 0 1 0 0.00 EXOSC4 54512 mdanderson.org 37 8 145135472 145135472 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_019037 exon3 c.G706T p.V236L CAGCATGTGCGTG 12 2 0.17 12 0 0 50 0 0.00 MPDZ 8777 broad.mit.edu 37 9 13217201 13217201 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . MPDZ NM_003829 exon9 c.C1179A p.G393G AATGTAGCCAGCA 247 6 0.02 212 1 0.0047169811 324 28 0 0.00 C9orf96 169436 mdanderson.org 37 9 136270539 136270539 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 C9orf96_ENST00000371957,NS,carcinoma,+1,1 C9orf96_ENST00000371957 NM_153710 exon18 c.G2037T p.L679L GGGACTGGAATAG 24 4 0.17 8 0 0 1 1 1 0 0.00 PPEF1 5475 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 18845542 18845542 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . PPEF1 NM_006240 exon19 c.G1899T p.K633N TTTAAAGGCTTTC 251 8 0.03 149 1 0.0067114094 89 5 0 0.00 DDX3X 1654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 41205590 41205590 + Missense_Mutation SNP G G C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001193416 exon13 c.G1424C p.R475P GAGACCGTTCTCA 183 14 0.08 144 0 0 754 57 0.08 TSPYL2 64061 mdanderson.org 37 X 53111842 53111842 + Silent SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_022117 exon1 c.G162T p.A54A GGAGGCGGCACAG 28 3 0.11 17 0 0 7 0 0.00 NLGN3 54413 broad.mit.edu 37 X 70387352 70387352 + Missense_Mutation SNP A A C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . NLGN3 NM_181303 exon7 c.A1405C p.T469P CCTGAGACCCGCC 94 29 0.31 52 14 0.2692307692 159 1 0 0.00 MORC4 79710 broad.mit.edu 37 X 106184800 106184800 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . MORC4 NM_024657 exon17 c.C2723A p.P908H AAGTGAGGGAGGA 259 6 0.02 198 0 0 155 102 0 0.00 TENM1 10178 broad.mit.edu;mdanderson.org 37 X 123556153 123556153 + Silent SNP G G A novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . . NM_001163278 exon24 c.C4440T p.C1480C AATTTTGCAGTCA 102 10 0.10 73 0 0 3 0 0.00 UBE2NL 389898 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 142967560 142967560 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . UBE2NL NM_001012989 exon1 c.G358T p.D120Y CCAGATGATCCAT 177 79 0.45 153 1 0.0065359477 46 0 0 F8 2157 broad.mit.edu 37 X 154157224 154157224 + Missense_Mutation SNP T T C novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . F8 NM_000132 exon14 c.A4841G p.K1614R GTATCCTTTTTCT 164 4 0.02 106 0 0 646 0 0 IL9R 3581 broad.mit.edu 37 X 155234957 155234957 + Missense_Mutation SNP G G T novel TCGA-2G-AAH3-01A-11D-A42Y-10 TCGA-2G-AAH3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 914e1323-9f05-4117-9895-86f2ecd7a395 280dee5e-025a-4514-a742-494dcf4aca01 . IL9R NM_176786 exon7 c.G699T p.R233S GCACAGGGATCAC 186 5 0.03 246 0 0 73 0 0