Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV DNAJC16 23341 mdanderson.org 37 1 15892415 15892415 + Missense_Mutation SNP A A T rs2236215 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_015291 exon12 c.A1600T p.R534W TTTAGGAGGGAAA 99 3 0.03 193 0 0 21 0 0.00 . 0 broad.mit.edu 37 1 16958545 16958546 + RNA INS - - C rs113787707 bycluster TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . TCAGTTTCCCATC 12 3 0.25 23 0 0 2 0 0.00 L1TD1 54596 mdanderson.org 37 1 62676994 62676994 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001164835 exon5 c.G2548T p.V850F GATTATGTTTTGC 86 6 0.07 197 0 0 999 0 0.00 CD53 963 mdanderson.org 37 1 111440512 111440512 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_000560 exon7 c.G586T p.E196X GTGATTGAGGTAA 24 3 0.13 35 0 0 179 0 0.00 DUSP27 92235 mdanderson.org 37 1 167097040 167097040 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001080426 exon5 c.G2672T p.S891I CTGACAGTGCCAT 22 2 0.09 47 1 0.0212765957 0 0 RBBP5 5929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205084037 205084037 + Missense_Mutation SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_005057 exon3 c.A98G p.N33S CACCTGTTAAAGG 200 28 0.14 375 0 0 23 8 0.35 LARP4B 23185 mdanderson.org 37 10 861005 861005 + Silent SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_015155 exon16 c.C1701A p.L567L TGCACTGAGGGTC 52 3 0.06 63 0 0 66 0 0.00 IPMK 253430 mdanderson.org 37 10 59997522 59997522 + Missense_Mutation SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_152230 exon2 c.A244G p.R82G GGCCCCTTGGAGG 58 3 0.05 80 0 0 9 0 0.00 MKI67 4288 mdanderson.org 37 10 129914216 129914216 + Silent SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_002417 exon7 c.A456G p.S152S ATTTCCTGAAACT 35 3 0.09 78 1 0.0128205128 12 0 0.00 SLC43A1 8501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 57254608 57254608 + Missense_Mutation SNP A A G novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001198810 exon14 c.T1493C p.F498S GCCATGAAAAGTG 49 4 0.08 81 0 0 471 101 0.21 OR4D10 390197 mdanderson.org 37 11 59245149 59245149 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001004705 exon1 c.G247T p.V83L GTTCTGGTGGACC 61 3 0.05 157 0 0 0 0 ZP1 22917 mdanderson.org 37 11 60642677 60642677 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_207341 exon11 c.G1730T p.G577V CAGTGGGCTTTGA 39 3 0.08 53 0 0 0 0 PITPNM1 9600 mdanderson.org 37 11 67267769 67267769 + Missense_Mutation SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001130848 exon6 c.G764A p.R255H GCCATGCGCTGGG 49 3 0.06 61 0 0 38 0 0.00 CNTN5 53942 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 100211902 100211902 + Missense_Mutation SNP C C A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 CNTN5_ENST00000524871,bladder,carcinoma,-2,2 CNTN5_ENST00000524871 NM_001243270 exon22 c.C2995A p.P999T GTCATACCATTAG 114 10 0.09 272 0 0 -2 2 0 0 ARHGEF12 23365 mdanderson.org 37 11 120302598 120302598 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_015313 exon11 c.G902T p.R301L CTTCTCGGCCCAG 47 3 0.06 116 0 0 11 0 0.00 PPFIA2 8499 mdanderson.org 37 12 81671111 81671111 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_003625 exon28 c.C3295A p.Q1099K CATGTTGGCTTGC 45 3 0.07 81 0 0 0 0 . 0 broad.mit.edu 37 12 110868215 110868216 + RNA DEL GT GT - rs113592903 bycluster;by1000genomes;alternate_allele TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 GT GT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . GTGTGCGTGTGTG 9 3 0.33 5 0 0 0 0 DDX24 57062 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 94545823 94545823 + Missense_Mutation SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . DDX24 NM_020414 exon2 c.A266G p.E89G TTTCCCTCCTCCT 119 7 0.06 148 1 0.0067567568 82 325 0 0.00 SV2B 9899 mdanderson.org 37 15 91809917 91809917 + Missense_Mutation SNP A A G novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_014848 exon8 c.A1114G p.K372E ATTTTCAAGCAGG 46 3 0.07 66 0 0 1 0 0.00 TTC23 64927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 99740253 99740253 + Silent SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001040657 exon7 c.A630G p.Q210Q AGCTGCTTGATAG 74 18 0.24 147 0 0 5 2 0.40 PPL 5493 mdanderson.org 37 16 4949240 4949240 + Missense_Mutation SNP C C T rs61734749 bycluster;byfrequency;by1000genomes TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_002705 exon7 c.G752A p.R251H CGCCGGCGGCTGG 51 3 0.06 49 0 0 0.009 2 0 0.00 DNAH3 55567 mdanderson.org 37 16 21132080 21132080 + Silent SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 DNAH3_ENST00000261383,bladder,carcinoma,-2,4 DNAH3_ENST00000261383 NM_017539 exon11 c.G1680A p.A560A GGCAGCCGCGTGC 30 2 0.07 74 0 0 -2 4 0 0 ARMC5 79798 mdanderson.org 37 16 31470916 31470916 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001105247 exon1 c.G71T p.G24V CGGCCGGGGAGGC 22 2 0.09 23 0 0 3 0 0.00 LOC643802 0 broad.mit.edu 37 16 53404542 53404543 + RNA INS - - A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . CTTTCTCAAACTT 6 2 0.33 16 1 0.0625 0 0 HSF4 3299 mdanderson.org 37 16 67201672 67201672 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 HSF4,NS,carcinoma,-2,1 HSF4 NM_001040667 exon11 c.G904T p.D302Y GGGGGGGATGGCG 29 3 0.10 52 0 0 -2 1 0 0 PLSCR3 57048 mdanderson.org 37 17 7296551 7296551 + Missense_Mutation SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_020360 exon5 c.G419A p.R140H GCCAGGCGGACAC 20 3 0.15 20 0 0 34 0 0.00 CUEDC1 404093 broad.mit.edu 37 17 55962851 55962851 + Silent SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . CUEDC1 NM_001271875 exon2 c.A75G p.G25G CGTGCCTCCCCCG 34 10 0.29 25 7 0.28 37 2 0 0.00 MIER2 54531 broad.mit.edu 37 19 327235 327235 + Missense_Mutation SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . MIER2 NM_017550 exon5 c.C391T p.L131F CTGAAAGCAAATC 95 11 0.12 101 6 0.0594059406 51 202 0 0.00 SEMA6B 10501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 4546434 4546434 + Missense_Mutation SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_032108 exon15 c.G1649A p.G550D CAGGAGCCGTCGG 122 7 0.06 98 0 0 130 19 0.15 TIMM44 10469 broad.mit.edu 37 19 7998441 7998441 + Missense_Mutation SNP A A C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . TIMM44 NM_006351 exon7 c.T698G p.V233G AGCACGACCCCCA 226 25 0.11 159 11 0.0691823899 47 220 1 0.00 RFX1 5989 mdanderson.org 37 19 14091461 14091461 + Missense_Mutation SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_002918 exon6 c.C662T p.A221V GCCCCGGCTGTCT 26 3 0.12 25 0 0 17 0 0.00 ARHGAP33 115703 broad.mit.edu 37 19 36268760 36268760 + Translation_Start_Site SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . ARHGAP33 NM_052948 exon3 c.G139A p.A47T CGGCTGGCTGACT 156 4 0.03 170 0 0 102 29 0 0.00 SYMPK 8189 broad.mit.edu 37 19 46319285 46319285 + Missense_Mutation SNP A A G novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . SYMPK NM_004819 exon26 c.T3511C p.S1171P AGGGGGAGGAAGA 125 5 0.04 115 3 0.0260869565 104 339 3 0.01 WDR43 23160 mdanderson.org 37 2 29158442 29158442 + Missense_Mutation SNP C C A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_015131 exon12 c.C1493A p.P498H GGATGCCCCTGCA 44 3 0.07 117 0 0 116 0 0.00 SIRPA 140885 mdanderson.org 37 20 1876144 1876144 + Silent SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001040022 exon2 c.G51T p.L17L CTGCCTGCTGCTC 27 2 0.07 30 0 0 8 0 0.00 PANK2 80025 mdanderson.org 37 20 3888898 3888898 + Silent SNP G G A rs78631398 bycluster;by1000genomes TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_153638 exon2 c.G954A p.A318A TGGAGCGTACAAA 33 3 0.09 43 0 0 0.001 46 0 0.00 PAX1 5075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 21687362 21687362 + Silent SNP C C A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 PAX1_ENST00000398485,NS,carcinoma,0,2 PAX1_ENST00000398485 NM_006192 exon2 c.C573A p.I191I TGGCATCTTTGCC 87 21 0.24 59 0 0 0 2 0 0 BAGE 85319 broad.mit.edu 37 21 11072388 11072389 + RNA INS - - T rs140345115 bycluster TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . TCACGCCGTGATT 7 2 0.29 4 0 0 0 0 SLC37A1 54020 mdanderson.org 37 21 43959638 43959638 + Missense_Mutation SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_018964 exon7 c.C367T p.R123C GGGGAGCGCCTGC 143 6 0.04 163 0 0 32 0 0.00 CECR1 51816 broad.mit.edu 37 22 17684613 17684613 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . CECR1 NM_017424 exon3 c.C593A p.T198K TGGTTTGTGTAAA 151 5 0.03 153 0 0 77 67 0 0.00 CDC45 8318 mdanderson.org 37 22 19484956 19484956 + Silent SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001178010 exon9 c.G735T p.L245L GGACCTGAATGAC 54 3 0.06 64 0 0 119 1 0.01 PIWIL3 440822 broad.mit.edu 37 22 25145722 25145722 + Missense_Mutation SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . PIWIL3 NM_001008496 exon10 c.A1154G p.K385R AGGCCCTTTTTCC 128 4 0.03 252 1 0.003968254 115 0 0 HSCB 150274 broad.mit.edu 37 22 29138096 29138096 + Missense_Mutation SNP A A G rs200681712 TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . HSCB NM_172002 exon1 c.A13G p.R5G CGGGGGAGAGCCG 62 20 0.32 64 19 0.296875 16 8 1 0.13 CDC42EP1 11135 broad.mit.edu 37 22 37962631 37962631 + Missense_Mutation SNP T T G novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . CDC42EP1 NM_152243 exon2 c.T275G p.V92G GGAGGGTGGGGGC 183 27 0.15 227 12 0.0528634361 53 38 2 0.05 FBLN2 2199 broad.mit.edu;mdanderson.org 37 3 13612701 13612701 + Silent SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . FBLN2 NM_001998 exon2 c.G846A p.E282E AGAAGAGGAGGAG 70 5 0.07 71 1 0.014084507 137 12 0 0.00 GPD1L 23171 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 32201135 32201135 + Missense_Mutation SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_015141 exon7 c.C928T p.R310C GTGTACCGCATCC 160 11 0.07 382 0 0 11 1 0.09 ITIH4 3700 mdanderson.org 37 3 52863240 52863240 + Missense_Mutation SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_002218 exon2 c.C146T p.A49V GTGTGGGCAAATC 86 5 0.06 120 0 0 5 0 0.00 C3orf55 152078 mdanderson.org 37 3 157271080 157271080 + Missense_Mutation SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001130002 exon2 c.G34A p.A12T AACACTGCAAACT 51 3 0.06 103 0 0 0 0 MTTP 4547 broad.mit.edu;ucsc.edu;mdanderson.org 37 4 100529976 100529976 + Missense_Mutation SNP G G C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . MTTP NM_000253 exon13 c.G1611C p.K537N TGAAAAGACTGTG 46 4 0.09 122 0 0 127 0 0 METTL14 57721 mdanderson.org 37 4 119621782 119621782 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_020961 exon8 c.G723T p.L241F GGGGTTGGACCTT 50 3 0.06 144 0 0 15 0 0.00 KLHL2 11275 bcgsc.ca;mdanderson.org 37 4 166231709 166231709 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . KLHL2 NM_001161521 exon10 c.G1056T p.M352I AGGCATGGTCTAC 83 5 0.06 147 0 0 42 8 0 0.00 RHOBTB3 22836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 95067647 95067647 + Silent SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 RHOBTB3,caecum,carcinoma,0,1 RHOBTB3 NM_014899 exon2 c.G87A p.L29L TTACCTGGGGAGA 315 25 0.08 292 0 0 0 1 26 4 0.15 SRP19 7310 broad.mit.edu 37 5 112228537 112228537 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 ZRSR1_ENST00000391338,NS,carcinoma,-2,2 SRP19 . . . . GAATCCGAGAGAA 148 3 0.02 254 0 0 12 2 8 0 0.00 ARSI 340075 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 5 149677844 149677844 + Missense_Mutation SNP G G A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 ARSI,NS,carcinoma,+2,2 ARSI NM_001012301 exon2 c.C643T p.R215C TGGCGCGCTGGGC 62 5 0.08 94 0 0 2 2 9 2 0.22 DNAH8 1769 mdanderson.org 37 6 38899770 38899770 + Splice_Site SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001206927 exon76 c.11457+1G>T . AAACAGGTAATCT 54 3 0.06 113 0 0 0 0 SENP6 26054 mdanderson.org 37 6 76343405 76343405 + Missense_Mutation SNP A A G rs200483413 TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001100409 exon4 c.A316G p.I106V AACCCAATTGGAC 50 3 0.06 105 0 0 52 0 0.00 SAMD5 389432 broad.mit.edu 37 6 147830216 147830216 + Missense_Mutation SNP A A C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . SAMD5 NM_001030060 exon1 c.A152C p.H51P CCGCGCACCGCCG 60 20 0.33 73 19 0.2602739726 4 0 0 WIPI2 26100 mdanderson.org 37 7 5266967 5266967 + Silent SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001033518 exon10 c.G1005T p.S335S CTGCTCGCTAGCC 59 3 0.05 56 0 0 301 1 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72669801 72669802 + RNA INS - - A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . AATCTTGAAAAAA 478 0 0.00 738 0 0 0 0 CROT 54677 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 87004971 87004971 + Missense_Mutation SNP A A G novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001143935 exon9 c.A764G p.K255R ACAAGAAGTGCCA 86 5 0.06 190 0 0 6 0 0.00 . 26495 bcgsc.ca 37 7 141587600 141587600 + RNA SNP A A G novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . TCTCCTACACCTA 32 4 0.13 42 0 0 0 0 CLU 1191 mdanderson.org 37 8 27461858 27461858 + Missense_Mutation SNP C C A novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001831 exon6 c.G884T p.C295F CGCAGGCAGCCCG 48 3 0.06 66 0 0 109 1 0.01 . 0 broad.mit.edu 37 9 68405348 68405349 + RNA INS - - T rs140647636 bycluster TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . . . . . TTCTCAATAAATG 7 3 0.43 6 0 0 0 0 SLC44A1 23446 mdanderson.org 37 9 108072110 108072110 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_080546 exon3 c.G232T p.A78S TTGGAAGCAATAC 46 3 0.07 108 0 0 63 0 0.00 AKNA 80709 mdanderson.org 37 9 117124711 117124711 + Missense_Mutation SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_030767 exon8 c.A1891G p.T631A CAGGCGTCCCCTT 56 3 0.05 78 0 0 62 0 0.00 COX1 4512 broad.mit.edu 37 MT 6164 6164 + Missense_Mutation SNP C C T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . ENST00000361624 exon1 c.C261T p.I87I AATAATCGGTGCC 29 6 0.21 11 0 0 0 0 CTPS2 56474 broad.mit.edu 37 X 16685816 16685816 + Missense_Mutation SNP T T C novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . CTPS2 NM_001144002 exon12 c.A1221G p.I407M AAACTCTATCACT 134 4 0.03 225 0 0 49 6 0 0.00 PHF16 0 broad.mit.edu;bcgsc.ca 37 X 46857586 46857586 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . PHF16 NM_001077445 exon4 c.G191T p.S64I CTGATAGCTATTA 55 5 0.09 87 0 0 72 1 0 0.00 RBM10 8241 hgsc.bcm.edu 37 X 47030582 47030582 + Missense_Mutation SNP G G T novel TCGA-2G-AAH0-01A-11D-A42Y-10 TCGA-2G-AAH0-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 68054b73-f4e7-4235-bff9-06ddf450b59c 861dd19e-9942-47a4-b167-198541df4754 . . NM_001204468 exon4 c.G552T p.E184D GGAGGAGGATGAG 60 4 0.07 70 0 0 3 0 0.00