Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PLCH2 9651 broad.mit.edu 37 1 2436149 2436149 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PLCH2 NM_014638 exon22 c.G3748T p.V1250L TGCCCCGTGGCTG 90 3 0.03 76 0 0 131 3 0 0.00 ZBTB48 3104 broad.mit.edu;mdanderson.org 37 1 6647661 6647661 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . ZBTB48 NM_005341 exon7 c.G1348T p.G450C CGGAATGGCCTGC 66 4 0.06 71 0 0 33 57 0 0.00 SDC3 9672 hgsc.bcm.edu 37 1 31347395 31347395 + Missense_Mutation SNP T T C novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_014654 exon4 c.A911G p.E304G TCTGGCTCATCCC 88 4 0.05 113 0 0 23 0 0.00 SH3D21 79729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 36775175 36775175 + Silent SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001162530 exon10 c.G753A p.V251V GAAAGTGGTATCT 65 10 0.15 60 0 0 17 7 0.41 HCN3 57657 broad.mit.edu;mdanderson.org 37 1 155258014 155258014 + Silent SNP T T C novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . HCN3 NM_020897 exon8 c.T2085C p.G695G GCTGGGTCCCCCT 32 3 0.09 35 1 0.0285714286 74 0 0 GON4L 54856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155733205 155733205 + Missense_Mutation SNP C C A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001037533 exon22 c.G4624T p.D1542Y TTTCATCCTCTTT 101 6 0.06 80 0 0 47 13 0.28 PAPPA2 60676 broad.mit.edu 37 1 176671868 176671868 + Nonsense_Mutation SNP C C G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PAPPA2 NM_020318 exon9 c.C3362G p.S1121X AGGTGTCAGAGTG 43 9 0.21 52 3 0.0576923077 665 0 0 OBSCN 84033 mdanderson.org 37 1 228559278 228559278 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001271223 exon105 c.G23670T p.Q7890H GGAGCAGGCCACC 35 3 0.09 27 0 0 2 0 0.00 RYR2 6262 mdanderson.org 37 1 237789089 237789089 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001035 exon40 c.G6151T p.D2051Y GAGAGTGACTCCA 46 3 0.07 60 0 0 0 0 . 646309 bcgsc.ca;mdanderson.org 37 10 36812187 36812187 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . AAGGTGGCAGCAA 425 24 0.06 453 0 0 89 0 0.00 . 0 bcgsc.ca 37 10 65929122 65929122 + RNA SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . GCTCTTGTGAACT 218 12 0.06 231 0 0 17 0 0.00 CNNM1 26507 mdanderson.org 37 10 101089340 101089340 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 CNNM1_ENST00000356713,right_upper_lobe,carcinoma,0,1 CNNM1_ENST00000356713 NM_020348 exon1 c.G196T p.E66X GCCGCCGAAGGCA 21 3 0.14 22 0 0 0 1 0 0 HPS6 79803 mdanderson.org 37 10 103826173 103826173 + Silent SNP T T C novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_024747 exon1 c.T942C p.S314S GGGGTCTGCAGCC 45 3 0.07 37 0 0 22 0 0.00 PPRC1 23082 mdanderson.org 37 10 103892852 103892852 + Silent SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_015062 exon1 c.C27T p.D9D GAGAGACGGAGTC 19 3 0.16 22 0 0 7 0 0.00 FAM160A2 84067 mdanderson.org 37 11 6245294 6245294 + Missense_Mutation SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_032127 exon3 c.G323A p.R108H AACACACGGGTCA 75 4 0.05 81 0 0 12 0 0.00 HNRNPUL2 221092 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 62490079 62490079 + Silent SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 HNRNPUL2,NS,carcinoma,-1,1 HNRNPUL2 NM_001079559 exon6 c.C1089T p.C363C AGCAAAGCAGCCA 148 15 0.10 180 0 0 -1 1 121 29 0.24 C11orf68 83638 mdanderson.org 37 11 65685142 65685142 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001135635 exon2 c.C670T p.R224C CCAAGCGGTCCGT 55 3 0.05 68 0 0 106 0 0.00 CST6 1474 mdanderson.org 37 11 65779678 65779678 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001323 exon1 c.G163A p.A55T CAGGCGGCCGTGG 40 3 0.08 42 0 0 0 0 C11orf73 51501 broad.mit.edu;mdanderson.org 37 11 86013506 86013506 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . C11orf73 NM_016401 exon1 c.G16T p.V6L TGCTTGGTGGCGG 58 4 0.07 53 0 0 9 162 0 0.00 FOLH1B 219595 broad.mit.edu 37 11 89403957 89403958 + RNA INS - - T rs36065337 bycluster;by1000genomes TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . FOLH1B . . . . TTCTGAATTTTTT 6 3 0.50 7 0 0 93 0 0 ZC3H12C 85463 mdanderson.org 37 11 110035632 110035632 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_033390 exon6 c.G1822A p.E608K AGCCCTGAAAGGC 84 4 0.05 98 0 0 1 0 0.00 KCNJ5 3762 broad.mit.edu 37 11 128781827 128781827 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 KCNJ5,NS,carcinoma,+1,1 KCNJ5 NM_000890 exon2 c.G659T p.R220L TGTTCCGGGTGGG 116 4 0.03 137 0 0 560 1 7 0 0.00 PRB3 5544 broad.mit.edu 37 12 11420652 11420652 + RNA SNP C C T rs74786167 bycluster;byfrequency TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PRB3 NM_006249 exon3 c.G531A p.P177P ATGAGGCGGGGGA 343 13 0.04 251 3 0.0119521912 84 6 0 0.00 DDX11 1663 broad.mit.edu 37 12 31237980 31237980 + Silent SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . DDX11 NM_030653 exon5 c.G558A p.R186R TGAGCGGCTGGAG 531 6 0.01 414 2 0.0048309179 188 60 0 0.00 MRPS31P5 100887750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52741936 52741936 + RNA SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . TTCTTCCTTGTGA 65 8 0.12 71 0 0 4 0 0.00 SAMD4A 23034 mdanderson.org 37 14 55034821 55034821 + Missense_Mutation SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001161576 exon1 c.A187G p.N63D GAGGCCAACAGCC 11 2 0.18 13 0 0 5 0 0.00 RBM25 58517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 73577750 73577750 + Missense_Mutation SNP C C G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_021239 exon15 c.C1904G p.P635R CAACACCTAACAC 90 6 0.07 60 0 0 116 30 0.26 ATXN3 4287 hgsc.bcm.edu 37 14 92537354 92537355 + In_Frame_Ins INS - - CTGCTGCTGCTGCTGCTG rs76478261 alternate_allele TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 ATXN3,NS,carcinoma,0,7 ATXN3 NM_004993 exon10 c.916_917insCAGCAGCAGCAGCAGCAG p.G306delinsQQQQQQG GGTCCCCCTGCTG 59 0 0.00 79 0 0 46 107 0 0.00 HERC1 8925 hgsc.bcm.edu;broad.mit.edu 37 15 63904544 63904545 + Frame_Shift_Del DEL CG CG - novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 CG CG Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . HERC1 NM_003922 exon77 c.14306_14307del p.4769_4769del AGCACCCGCTCCT 172 16 0.09 177 0 0 624 73 0 0.00 WHAMM 123720 mdanderson.org 37 15 83478717 83478717 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001080435 exon1 c.G239A p.G80D GGGCCGGCCTGCT 10 2 0.20 12 0 0 0 0 PRSS33 260429 mdanderson.org 37 16 2835065 2835065 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_152891 exon5 c.C622A p.R208S CAATGCGCTCAGC 29 3 0.10 30 0 0 27 0 0.00 SMG1 23049 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 18844390 18844390 + Silent SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . SMG1 NM_015092 exon51 c.C8664T p.D2888D AAGACCGTCCAGT 205 7 0.03 196 0 0 401 4 0 0.00 CD19 930 broad.mit.edu 37 16 28944670 28944670 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . CD19 NM_001178098 exon4 c.G675T p.L225F GTCATTGCTGAGC 109 4 0.04 114 0 0 65 1 0 0.00 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 30734457 30734457 + Missense_Mutation SNP C C G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_006662 exon24 c.C4066G p.P1356A CCCACACCTACTC 129 9 0.07 120 0 0 9 1 0.11 FBXL19 54620 mdanderson.org 37 16 30953750 30953750 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001099784 exon9 c.G1580A p.G527D CCCTGGGCTCAGC 44 3 0.07 50 0 0 62 0 0.00 CES2 8824 hgsc.bcm.edu;broad.mit.edu 37 16 66977848 66977848 + Missense_Mutation SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_003869 exon12 c.A1792G p.R598G GCCCACAGGCTCC 98 4 0.04 104 0 0 42 0 0.00 KRT37 8688 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 39578411 39578411 + Silent SNP G G A rs147477673 TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . KRT37 NM_003770 exon5 c.C930T p.S310S CTCCTCGGAGCAG 136 11 0.08 116 1 0.0086206897 61 0 0 PTGES3L-AARSD1 100885850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 41108298 41108298 + Missense_Mutation SNP T T G rs199585384 alternate_allele TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001136042 exon11 c.A1108C p.I370L CCCGAATGGGCCC 112 5 0.04 118 0 0 236 60 0.25 COG1 9382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 71204453 71204453 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_018714 exon14 c.G2806T p.V936F TGGCAGGTTGTCC 65 7 0.11 77 0 0 178 32 0.18 ZNF236 7776 mdanderson.org 37 18 74580747 74580747 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_007345 exon4 c.G464A p.C155Y ATGCCTGCAAGGC 33 3 0.09 33 0 0 1 0 0.00 HNRNPM 4670 mdanderson.org 37 19 8550553 8550553 + Missense_Mutation SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_005968 exon14 c.C1241T p.A414V GGGGTGCCGGCAT 13 3 0.23 27 0 0 509 1 0.00 LRP3 4037 mdanderson.org 37 19 33696438 33696438 + Silent SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_002333 exon5 c.C762T p.C254C GGCGTGCGGCCGG 31 2 0.06 33 0 0 17 0 0.00 WDR87 83889 hgsc.bcm.edu;broad.mit.edu 37 19 38377122 38377124 + In_Frame_Del DEL TTC TTC - novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 TTC TTC Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . WDR87 NM_031951 exon6 c.7071_7073del p.2357_2358del GGCTCTTTCTTCT 232 15 0.06 257 0 0 191 0 0 ZNF880 400713 hgsc.bcm.edu 37 19 52887146 52887146 + Nonsense_Mutation SNP A A T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 ZNF880,colon,carcinoma,-1,1 ZNF880 NM_001145434 exon4 c.A313T p.K105X TCTCTTAAAAATC 242 11 0.05 276 0 0 -1 1 27 0 0.00 TTC27 55622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 33012134 33012134 + Missense_Mutation SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_017735 exon16 c.G1916A p.S639N TCACCAGCACTGA 135 7 0.05 131 0 0 77 23 0.30 HK2 3099 mdanderson.org 37 2 75113795 75113795 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_000189 exon15 c.G2214T p.K738N CGGCAAGCAGAGG 41 3 0.07 42 0 0 63 0 0.00 CTNNA2 1496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 80772149 80772149 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001164883 exon10 c.G1333T p.V445L GAAGGGGTGAAAT 76 8 0.11 78 0 0 0 0 PGAP1 80055 broad.mit.edu 37 2 197711758 197711758 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PGAP1 NM_024989 exon22 c.C2119A p.L707I AAAGAAGTCTCAC 292 6 0.02 299 0 0 84 1 0 0.00 AOX1 316 broad.mit.edu 37 2 201485446 201485446 + Missense_Mutation SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . AOX1 NM_001159 exon17 c.C1778T p.A593V AGCATGCCACGGG 230 5 0.02 222 0 0 152 1 0 0.00 DEFB125 245938 mdanderson.org 37 20 77023 77023 + Missense_Mutation SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_153325 exon2 c.C436T p.P146S ACTATGCCACCAC 47 3 0.06 51 0 0 0 0 . 0 broad.mit.edu 37 20 29572402 29572403 + RNA INS - - AC rs200824028 alternate_allele TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . GAACGGGACACAC 7 3 0.43 5 0 0 0 0 TRPC4AP 26133 mdanderson.org 37 20 33609143 33609143 + Silent SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_015638 exon9 c.T1068C p.P356P TGGAGGAGGGAAC 48 3 0.06 53 0 0 41 0 0.00 MIR3648 0 broad.mit.edu 37 21 9825838 9825839 + RNA INS - - GCG rs372061766 bycluster TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . CGCGACTGCGGCG 8 6 0.75 6 0 0 0 0 GGT1 2678 broad.mit.edu 37 22 25016921 25016921 + Missense_Mutation SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . GGT1 NM_013430 exon9 c.A617G p.E206G AGGGGGAGAGACT 277 6 0.02 319 1 0.0031347962 68 33 1 0.03 TPST2 8459 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 26936904 26936906 + In_Frame_Del DEL CTC CTC - novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 CTC CTC Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . TPST2 NM_003595 exon3 c.692_694del p.231_232del GCACTTCTCCTTG 102 10 0.10 105 0 0 23 589 0 0.00 AP1B1 162 mdanderson.org 37 22 29730383 29730383 + Missense_Mutation SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001127 exon17 c.T2180C p.M727T GCCTTCATGGCTG 54 3 0.06 58 0 0 97 0 0.00 MTFP1 51537 mdanderson.org 37 22 30822783 30822783 + Missense_Mutation SNP G G T rs373693838 TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_016498 exon2 c.G146T p.S49I TGGCCAGCTCCTA 44 3 0.07 32 0 0 68 0 0.00 PLA2G6 8398 broad.mit.edu 37 22 38565263 38565263 + Silent SNP G G A rs150718378 bycluster;byfrequency;by1000genomes TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PLA2G6 NM_003560 exon2 c.C171T p.C57C CAGGACGCAGTCC 223 6 0.03 242 1 0.0041322314 54 13 0 0.00 EP300 2033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41573417 41573417 + Missense_Mutation SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001429 exon31 c.C5702T p.A1901V GTAAGGCAGCAGG 215 23 0.11 172 0 0 59 22 0.37 SBF1 6305 broad.mit.edu;mdanderson.org 37 22 50906112 50906112 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 SBF1_ENST00000380817,NS,carcinoma,0,2 SBF1 NM_002972 exon4 c.C287A p.T96K ACGCGCGTCGTTT 78 4 0.05 83 0 0 211 2 12 0 0.00 NEK10 152110 broad.mit.edu 37 3 27350472 27350472 + Silent SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . NEK10 NM_199347 exon11 c.C661A p.R221R TATCTCGGGCACC 463 4 0.01 379 0 0 271 0 0 ARHGAP31 57514 broad.mit.edu 37 3 119120673 119120673 + Silent SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . ARHGAP31 NM_020754 exon10 c.A1074G p.K358K AGGAAAAGAAACC 170 5 0.03 184 0 0 175 4 0 0.00 CASR 846 mdanderson.org 37 3 121981253 121981253 + Silent SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001178065 exon4 c.G1371T p.A457A TGAGGCGTGGCAG 28 3 0.11 34 0 0 0 0 IFT122 55764 mdanderson.org 37 3 129239065 129239065 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_052985 exon31 c.G3836T p.C1279F ATGGCTGCTGCCC 47 3 0.06 38 0 0 68 0 0.00 LRRC66 339977 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 4 52861139 52861139 + Silent SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001024611 exon4 c.C2049T p.N683N TTCCTTGTTAGCA 80 7 0.09 80 0 0 0 0 CNOT6L 246175 mdanderson.org 37 4 78678099 78678099 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_144571 exon5 c.C407A p.P136H GATAAAGGATTGC 49 3 0.06 56 0 0 0 0 CDS1 1040 broad.mit.edu;mdanderson.org 37 4 85560085 85560085 + Silent SNP T T C novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . CDS1 NM_001263 exon9 c.T819C p.P273P GTCTCCTAAAAAG 97 4 0.04 87 0 0 58 0 0 DAB2 1601 bcgsc.ca;mdanderson.org 37 5 39376964 39376964 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . DAB2 NM_001343 exon12 c.C1925A p.P642Q CCAAGTGGGTCTA 82 5 0.06 130 0 0 124 20 0 0.00 PCDHGB1 0 broad.mit.edu 37 5 140729996 140729996 + Missense_Mutation SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PCDHGB1 NM_018922 exon1 c.C169T p.R57W AGTGTCCGGGAGT 149 4 0.03 165 0 0 198 1 0 0.00 RUNX2 860 hgsc.bcm.edu;mdanderson.org 37 6 45390457 45390457 + Silent SNP G G A novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001024630 exon3 c.G186A p.Q62Q GCAGCAGCAGCAG 48 8 0.17 45 0 0 0 0 MMS22L 253714 broad.mit.edu 37 6 97609923 97609923 + Missense_Mutation SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . MMS22L NM_198468 exon22 c.C3340A p.L1114I CAGGGAGGAGTAG 109 3 0.03 151 0 0 102 6 0 0.00 EIF3B 8662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 2404052 2404052 + Silent SNP C C T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001037283 exon6 c.C1045T p.L349L ACCTACCTGGCTA 100 4 0.04 111 0 0 706 126 0.18 COBL 23242 broad.mit.edu;mdanderson.org 37 7 51095412 51095412 + Silent SNP G G C novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . COBL NM_015198 exon10 c.C3381G p.R1127R CACCTTGCGTAGT 141 5 0.04 138 0 0 167 21 3 0.14 rescued with RNA-seq . 340221 bcgsc.ca 37 7 57076653 57076653 + RNA SNP T T C rs111384738 bycluster;byfrequency;by1000genomes TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . CCGCAGTGCGCGC 105 9 0.09 92 0 0 0 0 CCT6P3 0 broad.mit.edu 37 7 64530103 64530103 + RNA SNP G G A rs369683052 bycluster TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . TGCTTGGGACATG 37 3 0.08 44 0 0 13 0 0.00 CACNA2D1 781 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 81693631 81693631 + Silent SNP A A T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . CACNA2D1 NM_000722 exon9 c.T768A p.I256I CACCAGAATAAGC 368 17 0.05 381 1 0.0026246719 191 0 0 CAV1 857 ucsc.edu 37 7 116166628 116166628 + Missense_Mutation SNP C C G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . CAV1 NM_001753 exon2 c.C80G p.P27R ACAAGCCCAACAA 84 6 0.07 115 0 0 13 301 89 0.30 GRM8 2918 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 126086148 126086148 + Missense_Mutation SNP C C G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_001127323 exon10 c.G2709C p.K903N CCCGCTCTTGACC 66 5 0.08 97 0 0 0 0 PYCRL 65263 broad.mit.edu;bcgsc.ca 37 8 144689164 144689175 + In_Frame_Del DEL CCAAGATGTGTT CCAAGATGTGTT - novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 CCAAGATGTGTT CCAAGATGTGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PYCRL NM_023078 exon3 c.320_331del p.107_111del CGGACACCAAGAT 277 11 0.04 269 0 0 14 11 0 0.00 OPLAH 26873 mdanderson.org 37 8 145114512 145114512 + Missense_Mutation SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_017570 exon3 c.T353C p.L118P TCAAAGAGGTCCC 53 3 0.06 55 0 0 4 0 0.00 MFSD3 113655 mdanderson.org 37 8 145735026 145735026 + Missense_Mutation SNP T T G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_138431 exon1 c.T310G p.L104V GCGGGGTTGCTGC 14 6 0.43 10 6 0.6 11 5 0.45 PRSS3 5646 broad.mit.edu;bcgsc.ca 37 9 33797853 33797855 + In_Frame_Del DEL ACA ACA - novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 ACA ACA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . PRSS3 NM_007343 exon3 c.398_400del p.133_134del GAGAGCACAACAT 101 10 0.10 142 0 0 79 0 0 . 0 broad.mit.edu 37 9 66461548 66461549 + RNA INS - - C rs112610171 bycluster TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . TAAGGAGTTTTGG 7 3 0.43 5 0 0 0 0 COL27A1 85301 broad.mit.edu 37 9 117037945 117037945 + Missense_Mutation SNP A A G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . COL27A1 NM_032888 exon37 c.A3614G p.D1205G AGGGGGACAGGGG 105 5 0.05 83 1 0.0120481928 200 20 0 0.00 RAPGEF1 2889 mdanderson.org 37 9 134497191 134497191 + Silent SNP G G T novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . NM_198679 exon11 c.C1900A p.R634R GCTGCCGCTGCTT 55 3 0.05 63 0 0 32 0 0.00 MIR223 407008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 65238810 65238810 + RNA SNP C C G novel TCGA-2G-AAGZ-01A-11D-A42Y-10 TCGA-2G-AAGZ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b9e36af2-c8cd-436c-9de1-408317d4f0a0 3de3355b-52d4-4275-a1e4-991e15876ae6 . . . . . . GCGGCACATGCTT 166 28 0.17 168 0 0 1 0 0.00