Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MMP23A 8511 hgsc.bcm.edu 37 1 1569784 1569784 + RNA SNP C C G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . AGGCAGCGGGGGG 62 4 0.06 52 0 0 0 0 NBPF1 55672 broad.mit.edu;mdanderson.org 37 1 16890591 16890591 + Silent SNP T T C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . AGGTAGTTCAAAG 1011 19 0.02 752 1 0.0013297872 85 0 0.00 . 100421113 bcgsc.ca 37 1 17077186 17077186 + RNA SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . AGCCAAGACCTGG 119 9 0.08 92 0 0 0 0 FNBP1L 54874 broad.mit.edu;ucsc.edu;mdanderson.org 37 1 93996313 93996313 + Splice_Site SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . FNBP1L NM_001164473 exon7 c.C512T p.A171V CCTAGGCCAAACA 871 97 0.11 591 1 0.0016920474 56 140 40 0.29 NAV1 89796 hgsc.bcm.edu 37 1 201786261 201786261 + Missense_Mutation SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_020443 exon29 c.C5386T p.R1796W TGGGTCCGGGACA 96 4 0.04 84 0 0 61 0 0.00 TRIM11 81559 ucsc.edu 37 1 228582736 228582736 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . TRIM11 NM_145214 exon6 c.C1077A p.C359X CTCCCTGCACACC 42 4 0.10 45 0 0 38 113 0 0.00 PRR26 414235 mdanderson.org 37 10 696311 696311 + RNA SNP C C T rs187635206 by1000genomes TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . GGATAACGCCAGC 51 4 0.08 43 0 0 0 1 0 0.00 SKIDA1 387640 broad.mit.edu;mdanderson.org 37 10 21806056 21806056 + Silent SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_207371 exon4 c.C696T p.A232A AGCAGCGGCGGCG 16 4 0.25 23 0 0 0 0 KIAA1217 56243 hgsc.bcm.edu;mdanderson.org 37 10 24810770 24810770 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 KIAA1217,colon,carcinoma,0,1 KIAA1217 NM_019590 exon12 c.G2368T p.V790L GAGGCCGTGCGGT 58 3 0.05 48 0 0 0 1 3 0 0.00 ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 61844468 61844468 + Missense_Mutation SNP A A T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001204404 exon33 c.T3969A p.D1323E TACGGGATCATTC 176 23 0.13 135 0 0 24 9 0.38 TET1 80312 bcgsc.ca 37 10 70332383 70332383 + Silent SNP C C G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . TET1 NM_030625 exon2 c.C288G p.S96S AGAGTCCTTAACC 148 0 0.00 104 0 0 255 17 0 0.00 GRID1 2894 broad.mit.edu;mdanderson.org 37 10 87373227 87373227 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . GRID1 NM_017551 exon15 c.C2538A p.C846X CACCAGGCAGGCC 121 10 0.08 135 1 0.0074074074 204 1 0 0.00 STAMBPL1 57559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 90672864 90672864 + Missense_Mutation SNP T T C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_020799 exon6 c.T427C p.Y143H AACAAATATAAAG 51 6 0.12 38 0 0 19 0 0.00 MMS19 64210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 99218609 99218609 + Missense_Mutation SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_022362 exon30 c.G3013A p.D1005N TGTCATCCAGGGG 206 22 0.11 150 0 0 488 100 0.20 SEC31B 25956 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 10 102250017 102250017 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_015490 exon21 c.C2713T p.P905S TCCCAGGGAATCC 177 18 0.10 137 0 0 11 1 0.09 RASSF7 8045 mdanderson.org 37 11 562658 562658 + Missense_Mutation SNP C C A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001143994 exon3 c.C704A p.A235E CTATGGCATCTGC 19 3 0.16 14 0 0 42 0 0.00 CDHR5 53841 broad.mit.edu 37 11 617401 617401 + Missense_Mutation SNP T T C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . CDHR5 NM_021924 exon15 c.A2488G p.R830G CACCCCTCCCCGC 114 22 0.19 143 12 0.0839160839 77 1 0 0.00 STIM1 6786 mdanderson.org 37 11 4107735 4107735 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_003156 exon11 c.G1503T p.Q501H TCGGCAGCGCCTG 134 5 0.04 131 0 0 91 0 0.00 CKAP5 9793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 46812057 46812057 + Missense_Mutation SNP C C G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001008938 exon14 c.G1727C p.G576A TCCAGTCCTTTCT 146 9 0.06 165 0 0 137 49 0.36 FTH1 2495 mdanderson.org 37 11 61732885 61732885 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_002032 exon2 c.C217A p.L73M TCTGCAGCTTCAT 51 3 0.06 54 0 0 3467 0 0.00 CEP164 22897 broad.mit.edu 37 11 117268013 117268013 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . CEP164 NM_001271933 exon26 c.G3494A p.R1165H ATATGCGCAAGAA 111 4 0.04 133 0 0 121 37 0 0.00 WNT5B 81029 bcgsc.ca 37 12 1755317 1755317 + Missense_Mutation SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . WNT5B NM_032642 exon5 c.A979G p.K327E CAGTTCAAGAGCG 90 0 0.00 61 0 0 27 36 0 0.00 RBP5 0 broad.mit.edu 37 12 7281645 7281674 + RNA DEL TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC - novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . RBP5 . . . . TGGCTTTTCCTGA 8 3 0.38 5 0 0 20 12 0 0.00 ZFC3H1 196441 mdanderson.org 37 12 72057209 72057209 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_144982 exon1 c.C182T p.A61V CCCCGGGCCGAGT 51 3 0.06 33 0 0 13 0 0.00 HECTD4 283450 bcgsc.ca 37 12 112641514 112641514 + Missense_Mutation SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001109662 exon54 c.G7930A p.A2644T GCAGAGCAGTTCC 243 0 0.00 175 0 0 29 0 0.00 KDM2B 84678 mdanderson.org 37 12 121881564 121881564 + Silent SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_032590 exon17 c.C2484A p.S828S GTGAGAGGAGGAA 24 2 0.08 26 0 0 167 0 0.00 TPTE2 93492 broad.mit.edu 37 13 20025336 20025336 + Silent SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . TPTE2 NM_199254 exon12 c.T771C p.H257H GTTTCGATGTTTC 94 9 0.10 86 1 0.011627907 225 2 0 0.00 RNF113B 140432 mdanderson.org 37 13 98829406 98829406 + Missense_Mutation SNP C C A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_178861 exon1 c.G85T p.G29W CAGCCCCTTTCCG 24 3 0.13 30 0 0 2 0 0.00 . 0 broad.mit.edu 37 14 20138373 20138374 + RNA INS - - AAG novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . CAAAAGAAAGAAA 29 9 0.31 31 0 0 0 0 . 0 bcgsc.ca 37 14 22054477 22054477 + RNA SNP C C T rs11847952 bycluster;byfrequency;byhapmap;by1000genomes TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . CTTCATCGCCAGT 46 0 0.00 34 0 0 0 0 EFS 0 broad.mit.edu 37 14 23828820 23828820 + Silent SNP T T G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . EFS NM_005864 exon4 c.A867C p.P289P TGGGGGTGGGGGG 54 12 0.22 40 1 0.025 37 1 0 0.00 KLHDC2 23588 bcgsc.ca 37 14 50249093 50249093 + Missense_Mutation SNP G G C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . KLHDC2 NM_014315 exon11 c.G962C p.W321S GGTTATGGCACAC 220 1 0.00 119 0 0 33 286 0 0.00 ATG2B 55102 broad.mit.edu 37 14 96752258 96752258 + Missense_Mutation SNP A A C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . ATG2B NM_018036 exon42 c.T6071G p.V2024G CCAGTCACCCCTC 214 34 0.16 158 14 0.0886075949 169 75 3 0.04 EVL 51466 broad.mit.edu 37 14 100594980 100594980 + Silent SNP A A C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . EVL NM_016337 exon6 c.A612C p.P204P TCCCCCACCCCCA 75 26 0.35 58 9 0.1551724138 42 96 1 0.01 TNFRSF12A 51330 mdanderson.org 37 16 3071298 3071298 + Silent SNP G G A rs2232797 bycluster;by1000genomes TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_016639 exon2 c.G177A p.P59P GCGACCGCACAGC 22 2 0.09 22 0 0 0.002 16 0 0.00 ZNF205 7755 bcgsc.ca 37 16 3169402 3169402 + Silent SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . ZNF205 NM_003456 exon7 c.G741T p.P247P AGGGCCGGCCAAA 44 0 0.00 57 0 0 42 50 0 0.00 SMG1 23049 bcgsc.ca 37 16 18846457 18846457 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . SMG1 NM_015092 exon49 c.C8087A p.P2696H GTTGGGGGTGGCT 81 0 0.00 74 0 0 401 42 0 0.00 MNT 4335 broad.mit.edu;mdanderson.org 37 17 2298498 2298498 + Silent SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . MNT NM_020310 exon2 c.C324T p.P108P TGCCGCGGGCAAG 17 4 0.24 23 0 0 35 12 6 0.50 . 0 broad.mit.edu 37 17 18334177 18334177 + RNA DEL T T - rs72001069 TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . TCTCTGTTTTTTT 150 8 0.05 155 0 0 0 0 SLC47A2 146802 mdanderson.org 37 17 19618501 19618501 + Silent SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001099646 exon2 c.C153A p.I51I GATGTAGATCATA 33 3 0.09 22 0 0 1 0 0.00 PLEKHM1 9842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 43522989 43522989 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_014798 exon9 c.C2684T p.A895V GGCTGGGCCCGGA 166 32 0.19 118 0 0 18 0 0.00 ACE 1636 mdanderson.org 37 17 61574523 61574523 + Missense_Mutation SNP C C A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_000789 exon25 c.C3717A p.D1239E CCCAGACAGCGGC 39 3 0.08 31 0 0 270 0 0.00 BIRC5 0 broad.mit.edu 37 17 76219856 76219857 + Frame_Shift_Del DEL TC TC - novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 TC TC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . BIRC5 . . . . GCTGCTTCTCTCT 56 7 0.13 12 0 0 32 304 0 0.00 DNAH17 8632 broad.mit.edu 37 17 76488820 76488820 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . DNAH17 NM_173628 exon42 c.C6436A p.Q2146K GGTTCTGATAGGT 147 5 0.03 98 0 0 347 1 0 0.00 AATK 9625 mdanderson.org 37 17 79104942 79104942 + Missense_Mutation SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001080395 exon3 c.G253A p.A85T GTGCTGCCGTGGC 48 3 0.06 33 0 0 2 0 0.00 DSG2 1829 bcgsc.ca 37 18 29122743 29122743 + Silent SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 DSG2,NS,malignant_melanoma,+1,2 DSG2 NM_001943 exon14 c.C2262T p.S754S GGCTTCCAGAGAC 127 0 0.00 115 0 0 115 2 251 0 0.00 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 38948767 38948767 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001042723 exon18 c.G2002T p.D668Y ATGGTGGACGAGG 128 16 0.13 91 0 0 2 0 0.00 . 0 broad.mit.edu 37 19 50578553 50578554 + RNA INS - - GG novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . AGGGGCTGGGCCT 228 7 0.03 208 0 0 0 0 . 0 broad.mit.edu 37 19 50578560 50578560 + RNA DEL G G - novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . GGGCCTGGGACTC 213 9 0.04 190 0 0 0 0 ZNF28 7576 ucsc.edu 37 19 53304632 53304632 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . ZNF28 NM_006969 exon4 c.C466T p.P156S CTTCAGGCTGAAA 201 7 0.03 122 6 0.0491803279 191 66 8 0.12 rescued with RNA-seq BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 32626436 32626436 + Missense_Mutation SNP G G C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_016252 exon7 c.G1240C p.V414L TGGGATGTTTCCA 200 26 0.13 131 0 0 5 2 0.40 MSH6 2956 bcgsc.ca 37 2 48026849 48026849 + Missense_Mutation SNP A A C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . MSH6 NM_000179 exon4 c.A1727C p.D576A CAGATGATCGCCA 217 0 0.00 153 0 0 341 350 0 0.00 STON1 11037 bcgsc.ca 37 2 48809124 48809124 + Missense_Mutation SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . STON1 NM_001198595 exon3 c.A1352G p.N451S ATGGGAACCTGGA 179 0 0.00 148 0 0 100 2 0 0.00 PSME4 23198 bcgsc.ca 37 2 54155274 54155274 + Missense_Mutation SNP T T C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . PSME4 NM_014614 exon11 c.A1483G p.N495D AGTCATTTGGATC 170 1 0.01 169 0 0 247 46 0 0.00 . 0 broad.mit.edu 37 2 89185535 89185535 + RNA SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . TACTGGGCATCTA 225 5 0.02 246 0 0 12435 55 0.00 BUB1 699 broad.mit.edu 37 2 111406949 111406949 + Missense_Mutation SNP T T A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . BUB1 NM_004336 exon19 c.A2209T p.I737F CAACAATGAAGTC 316 23 0.07 223 10 0.0448430493 91 298 0 0.00 EEF1B2 1933 broad.mit.edu 37 2 207025358 207025358 + Missense_Mutation SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 EEF1B2,NS,carcinoma,0,19 EEF1B2 NM_021121 exon3 c.A127G p.S43G GTGTCCAGCCCAC 219 4 0.02 201 1 0.0049751244 58 19 3352 5 0.00 EEF1B2 1933 broad.mit.edu 37 2 207025366 207025366 + Silent SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 EEF1B2,NS,carcinoma,0,19 EEF1B2 NM_021121 exon3 c.G135A p.P45P CCCACCGCCTGCC 216 4 0.02 194 1 0.0051546392 58 19 3453 1 0.00 HDAC4 9759 broad.mit.edu 37 2 240048208 240048208 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . HDAC4 NM_006037 exon12 c.C1462A p.Q488K GAAACTGCTGATG 100 3 0.03 87 0 0 127 7 0 0.00 PRR21 643905 broad.mit.edu 37 2 240982060 240982060 + Missense_Mutation SNP C C A rs201132375 bycluster TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . PRR21 NM_001080835 exon1 c.G340T p.G114C AAGGGCCGTGGGT 85 6 0.07 71 2 0.0281690141 53 0 0 ANGPT4 51378 mdanderson.org 37 20 865968 865968 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_015985 exon4 c.C588A p.S196R GAGCGCGCTGCGG 23 2 0.09 20 0 0 0 0 TMX4 56255 broad.mit.edu 37 20 8000252 8000252 + Silent SNP A A C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . TMX4 NM_021156 exon1 c.T9G p.G3G GCGCCCACCCGCC 50 27 0.54 47 14 0.2978723404 39 5 0 0.00 BAGE2 85319 broad.mit.edu 37 21 11057305 11057306 + RNA INS - - G rs150202290 bycluster TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . GAAGATAGGAAAA 7 3 0.43 6 0 0 0 0 . 54099 bcgsc.ca 37 21 33000644 33000644 + RNA SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . AACCAGGTACAAA 155 0 0.00 89 0 0 1 0 0.00 UMODL1 89766 bcgsc.ca 37 21 43531009 43531009 + Missense_Mutation SNP G G A rs200274014 TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . UMODL1 NM_173568 exon11 c.G1677A p.M559I CCCCATGGGCGGT 215 0 0.00 182 0 0 186 0 0 SLC37A1 54020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 21 43999906 43999906 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_018964 exon20 c.G1582A p.V528I GACCAAGTTCCGT 95 11 0.12 42 0 0 77 17 0.22 LRP5L 91355 bcgsc.ca 37 22 25755835 25755835 + Silent SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . LRP5L NM_001135772 exon3 c.C225T p.D75D GTCCATGTCCTCT 151 0 0.00 163 0 0 23 9 0 0.00 ITPR1 3708 bcgsc.ca 37 3 4747945 4747945 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . ITPR1 NM_001099952 exon37 c.G4725T p.M1575I AGCCATGAACTGG 110 0 0.00 73 0 0 659 4 0 0.00 SLC4A7 9497 broad.mit.edu 37 3 27473139 27473140 + Frame_Shift_Ins INS - - G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 SLC4A7,NS,carcinoma,-1,1 SLC4A7 NM_003615 exon7 c.773_774insC p.R258fs GAGTGGCGGGAGG 149 11 0.07 97 0 0 119 1 0 0 TNIK 23043 broad.mit.edu 37 3 170875321 170875321 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . TNIK NM_001161562 exon12 c.C1149A p.H383Q CCGCTTGTGCTCC 216 5 0.02 197 2 0.0101522843 313 2 0 0.00 FGFRL1 53834 broad.mit.edu 37 4 1016078 1016078 + Missense_Mutation SNP A A C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . FGFRL1 NM_001004356 exon3 c.A167C p.D56A AGGGGGACCCGCC 90 11 0.12 78 7 0.0897435897 77 21 0 0.00 FGFRL1 53834 hgsc.bcm.edu 37 4 1019078 1019078 + Silent SNP T T A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 FGFRL1,colon,carcinoma,+2,1 FGFRL1 NM_001004356 exon7 c.T1458A p.S486S ACACTCTCACACA 224 9 0.04 264 2 0.0075757576 2 1 98 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 55599338 55599338 + Missense_Mutation SNP A A T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 KIT,NS,malignant_melanoma,0,44 KIT NM_000222 exon17 c.A2464T p.N822Y GATTCTAATTATG 159 15 0.09 90 0 0 0 44 976 198 0.20 UGT2B11 10720 mdanderson.org 37 4 70066408 70066408 + Missense_Mutation SNP C C A rs200919649 TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001073 exon6 c.G1340T p.R447I TGAATTCTTGATA 188 11 0.06 80 3 0.0375 0 0 MIR1305 0 broad.mit.edu 37 4 183090233 183090234 + RNA INS - - ACAT rs147460271 bycluster;by1000genomes TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . TACACACACACAC 20 9 0.45 7 0 0 0 0 RANBP17 64901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 170669748 170669748 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_022897 exon24 c.G2700T p.M900I CCATATGAGCTTC 193 20 0.10 152 0 0 26 4 0.15 . 0 broad.mit.edu 37 6 29478153 29478156 + RNA DEL AGAG AGAG - novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 AGAG AGAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . GGGGGCAGAGAGA 6 2 0.33 5 0 0 0 0 PRRC2A 7916 broad.mit.edu 37 6 31593349 31593349 + Silent SNP A A C rs200705973 TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 PRRC2A,NS,carcinoma,0,1 PRRC2A NM_004638 exon7 c.A720C p.P240P AGGCCCACCCCAG 148 20 0.14 134 8 0.0597014925 152 1 214 3 0.01 ARMC12 221481 mdanderson.org 37 6 35705924 35705924 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_145028 exon2 c.G365A p.R122H TCACTCGCTGTGT 42 3 0.07 40 0 0 0 0 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 7 4304811 4304811 + Missense_Mutation SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_152744 exon45 c.A6437G p.Y2146C ACCACTACATGAG 116 8 0.07 82 0 0 3 0 0.00 INHBA 3624 broad.mit.edu 37 7 41729988 41729988 + Missense_Mutation SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . INHBA NM_002192 exon3 c.C541A p.H181N GCGGGTGCTTCTG 167 5 0.03 131 1 0.0076335878 118 2 0 0.00 CCT6P3 0 broad.mit.edu;ucsc.edu 37 7 64528850 64528850 + RNA SNP T T G rs2949472 by1000genomes TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . TCTGGCTTTTTTT 37 6 0.16 22 0 0 9 0 0.00 . 378108 broad.mit.edu 37 7 72436665 72436666 + Missense_Mutation DNP CA CA TG novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 CA CA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 TRIM74,NS,carcinoma,0,1 . . . . p.L8P CAGCTCCAGCAGG 192 7 0.04 138 1 0.0072463768 1 0 0 MUC17 140453 hgsc.bcm.edu 37 7 100681533 100681533 + Missense_Mutation SNP C C A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001040105 exon3 c.C6836A p.T2279N GAACGACTCCATT 175 8 0.05 102 0 0 0 0 MLL5 55904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 104703808 104703808 + Missense_Mutation SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_018682 exon4 c.A197G p.Y66C ATAATTATGGTGC 241 30 0.12 134 0 0 29 2 0.07 HYAL4 23553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 123508991 123508991 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_012269 exon3 c.G664A p.D222N TATCCTGATTGCC 178 22 0.12 103 0 0 89 9 0.10 SLC37A3 84255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 140064288 140064288 + Silent SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_207113 exon5 c.C295T p.L99L TGAATAGGCCCTA 207 18 0.09 110 0 0 210 30 0.14 EPHB6 2051 bcgsc.ca;mdanderson.org 37 7 142562074 142562074 + Silent SNP C C T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . EPHB6 NM_004445 exon7 c.C516T p.S172S CTCCTCCTCTTCT 151 9 0.06 95 1 0.0105263158 168 8 0 0.00 ZFHX4 79776 bcgsc.ca 37 8 77775451 77775451 + Silent SNP T T A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 ZFHX4,colon,carcinoma,0,3 ZFHX4 NM_024721 exon11 c.T9501A p.P3167P ACCACCTCCTCCT 143 1 0.01 118 0 0 878 3 2 0 0.00 KLF10 7071 broad.mit.edu 37 8 103663762 103663762 + Silent SNP T T C novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . KLF10 NM_005655 exon3 c.A798G p.G266G TGGCACTCCCCCT 96 4 0.04 70 1 0.0142857143 44 121 0 0.00 LRP12 29967 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 8 105509852 105509852 + Missense_Mutation SNP C C A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_013437 exon5 c.G928T p.G310C CATAACCAGTACC 401 37 0.09 255 0 0 11 2 0.18 . 0 bcgsc.ca 37 9 40500069 40500069 + RNA SNP A A T rs2774142 by2hit2allele TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . AACCCAACTTTTT 207 12 0.06 189 3 0.0158730159 1 0 0.00 . 0 broad.mit.edu 37 9 66458656 66458657 + RNA DEL TT TT - novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . CTTAACTTTTTAA 8 3 0.38 4 0 0 1 0 0.00 RBM10 8241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 47039331 47039331 + Silent SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_001204468 exon10 c.G1149T p.G383G CCTGGGGGCCCTG 136 28 0.21 134 0 0 94 42 0.45 FOXP3 50943 broad.mit.edu;mdanderson.org 37 X 49108105 49108105 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . FOXP3 . . . . GTCACCGCCACCT 56 4 0.07 29 0 0 26 0 0 PPP1R3F 89801 mdanderson.org 37 X 49143522 49143522 + Silent SNP G G T novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_033215 exon4 c.G2370T p.A790A GCTTGCGCTGTGC 59 3 0.05 39 0 0 2 0 0.00 TRO 7216 broad.mit.edu 37 X 54949634 54949634 + Silent SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . TRO NM_016157 exon3 c.G669A p.S223S GGTCTCGCTGGCT 230 5 0.02 166 1 0.0060240964 246 86 0 0.00 PDZD4 57595 mdanderson.org 37 X 153069413 153069413 + Missense_Mutation SNP G G A novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . NM_032512 exon8 c.C1705T p.R569W GGCGCCGCGAGAG 43 3 0.07 29 1 0.0344827586 7 0 0.00 . 352905 bcgsc.ca 37 Y 59001457 59001457 + RNA SNP A A G novel TCGA-2G-AAGI-05A-11D-A42Y-10 TCGA-2G-AAGI-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 459ea529-76c5-4fde-9e29-b455607c9d96 30b85f09-03f5-4f99-9b77-03a51c118dc8 . . . . . . CAAGCAATTCATC 42 2 0.05 35 0 0 1 0 0.00