Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CHD5 26038 mdanderson.org 37 1 6185281 6185281 + Missense_Mutation SNP T T C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_015557 exon29 c.A4273G p.N1425D GGGCATTGAAGCC 51 3 0.06 28 0 0 0 0 VWA5B1 127731 broad.mit.edu 37 1 20669623 20669623 + Missense_Mutation SNP A A C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . VWA5B1 NM_001039500 exon16 c.A2363C p.D788A ACTGGGACCCCCC 165 28 0.17 91 21 0.2307692308 44 0 0 AIM1L 55057 hgsc.bcm.edu 37 1 26671719 26671719 + Missense_Mutation SNP C C T rs201245727 TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001039775 exon2 c.G1430A p.R477Q TCCTTCCGGGTGG 43 7 0.16 23 0 0 0 0 RPS6KA1 6195 broad.mit.edu 37 1 26898009 26898009 + Missense_Mutation SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . RPS6KA1 NM_001006665 exon17 c.C1687T p.R563C TGCCTGCGCATCT 273 6 0.02 185 0 0 65 78 0 0.00 GPATCH3 63906 mdanderson.org 37 1 27226507 27226507 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_022078 exon1 c.C427A p.L143I GCCGAAGTCTGCG 114 5 0.04 69 0 0 47 0 0.00 DNASE2B 58511 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 84880407 84880407 + Silent SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . DNASE2B NM_021233 exon6 c.C942T p.G314G AAAGGGCACCAAA 308 12 0.04 253 0 0 40 0 0 WDR63 126820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 85573731 85573731 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_145172 exon15 c.G1569A p.W523X TTTTTGGGATATT 56 14 0.25 68 0 0 0 0 SEC22B 9554 broad.mit.edu 37 1 145109259 145109260 + RNA INS - - A rs11386827 bycluster;by1000genomes TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . CCAGCCCGGGGGC 12 5 0.42 5 0 0 0 0 NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + Splice_Site SNP G G A rs75226570 TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . NBPF10 . . . . ACAACAGTAAGTT 62 6 0.10 41 1 0.0243902439 221 0 0 ETV3L 440695 broad.mit.edu 37 1 157062558 157062558 + Silent SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . ETV3L NM_001004341 exon5 c.C969A p.G323G ATCCAGGCCTCCC 212 4 0.02 132 0 0 73 1 0 0.00 C1orf114 57821 mdanderson.org 37 1 169390745 169390745 + Silent SNP T T C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_021179 exon3 c.A924G p.S308S TCGATCTGAGTTG 131 5 0.04 93 0 0 2 0 0.00 TBCE 6905 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 235577756 235577756 + Missense_Mutation SNP C C G rs144747353 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_003193 exon4 c.C194G p.T65R ACCCGACAGGAGG 59 7 0.12 70 0 0 40 10 0.25 FANK1 92565 mdanderson.org 37 10 127585221 127585221 + Nonsense_Mutation SNP C C T rs202109621 TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_145235 exon1 c.C10T p.Q4X GAGCCCCAGAGTA 30 4 0.13 36 2 0.0555555556 2 0 0.00 TNNI2 7136 mdanderson.org 37 11 1862339 1862339 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001145841 exon5 c.G355T p.A119S ATGTCGGCCGATG 29 3 0.10 91 0 0 4 0 0.00 NLRP14 338323 broad.mit.edu 37 11 7081206 7081206 + Silent SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . NLRP14 NM_176822 exon9 c.G2715T p.L905L GCATCTGGATCTA 214 5 0.02 231 0 0 187 0 0 KCNK7 10089 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 65363219 65363219 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_005714 exon1 c.C25T p.R9X CGTATCGGGACCA 102 6 0.06 111 0 0 0 0 MARS 4141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 57883073 57883073 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_004990 exon3 c.G224A p.W75X CTGGCTGGGAGCA 125 24 0.19 114 0 0 25 3 0.12 . 0 broad.mit.edu 37 12 66039663 66039664 + RNA INS - - A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . GAAAAAGAAAAAA 40 8 0.20 23 0 0 10 0 0.00 SFSWAP 6433 mdanderson.org 37 12 132241113 132241113 + Silent SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001261411 exon11 c.G1644T p.V548V CGAGGTGGGAGCA 87 4 0.05 56 0 0 63 0 0.00 FAM194B 220081 ucsc.edu 37 13 46170726 46170726 + Missense_Mutation SNP A A G rs28548352 bycluster TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . FAM194B NM_182542 exon3 c.T415C p.Y139H CCAGATACTCTTC 208 34 0.16 218 1 0.004587156 42 0 0 FAM194B 220081 hgsc.bcm.edu 37 13 46170742 46170742 + Silent SNP A A G novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 FAM194B,colon,carcinoma,-2,1 FAM194B NM_182542 exon3 c.T399C p.H133H CTCCAGATGCTCT 196 16 0.08 224 1 0.0044642857 -2 1 0 0 TRIM13 10206 mdanderson.org 37 13 50590789 50590789 + RNA SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . ATAGTTGCTCCTG 144 8 0.06 204 1 0.0049019608 0 0 RASA3 22821 mdanderson.org 37 13 114778651 114778651 + Silent SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 RASA3,colon,carcinoma,-1,1 RASA3 NM_007368 exon15 c.C1479A p.S493S GTTGGGGGAGAGA 40 3 0.08 74 0 0 -1 1 2 0 0.00 IRF2BPL 64207 mdanderson.org 37 14 77493764 77493764 + Silent SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_024496 exon1 c.G372A p.Q124Q TTGTTGCTGCTGC 19 4 0.21 27 0 0 1 0 0.00 GTF2A1 2957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 81670290 81670290 + Silent SNP A A T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_015859 exon3 c.T291A p.P97P TTGCTGAGGTACT 93 31 0.33 111 0 0 0 0 SPESP1 246777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 69238736 69238736 + Missense_Mutation SNP G G A rs142183563 bycluster;by1000genomes;alternate_allele TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_145658 exon2 c.G863A p.R288Q TAGGACGAACAAG 170 14 0.08 165 0 0 8 0 0.00 CYP1A1 1543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 15 75015057 75015057 + Nonsense_Mutation SNP C C A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_000499 exon2 c.G382T p.G128X CTGGTCCAGAGTC 99 26 0.26 88 0 0 0 0 METTL9 51108 mdanderson.org 37 16 21611083 21611083 + Missense_Mutation SNP T T C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_016025 exon1 c.T29C p.L10P TGTGCCTGAGCCT 12 2 0.17 17 0 0 37 0 0.00 MVP 9961 ucsc.edu;bcgsc.ca 37 16 29853393 29853393 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . MVP NM_017458 exon10 c.G1594T p.A532S GAAACGGCGGATC 31 4 0.13 26 0 0 80 58 0 0.00 PRSS36 146547 mdanderson.org 37 16 31154157 31154157 + Missense_Mutation SNP C C A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001258290 exon9 c.G1258T p.V420L GGTTCACGGGCGT 41 3 0.07 34 0 0 0 0 SNX20 124460 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50707354 50707354 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . SNX20 NM_182854 exon4 c.C914A p.T305N TTCAGGGTGATGC 74 17 0.23 71 1 0.014084507 50 1 0 0.00 COG8 84342 mdanderson.org 37 16 69364875 69364875 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_032382 exon5 c.C1706A p.A569E CCCAGCGCCTGGT 93 5 0.05 91 0 0 18 0 0.00 . 0 broad.mit.edu 37 16 90161168 90161168 + RNA SNP T T G rs371109645 alternate_allele TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . CTGTCCTCCGAGT 18 3 0.17 14 0 0 1 1 1.00 TNK1 8711 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 7290430 7290430 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001251902 exon9 c.G1369T p.G457C CACAGAGGCACCC 124 7 0.06 142 0 0 6 0 0.00 . 0 broad.mit.edu 37 17 20459719 20459719 + RNA DEL A A - novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . ATATATATATATA 68 15 0.22 188 1 0.0053191489 0 0 FLJ36000 0 broad.mit.edu 37 17 21906824 21906825 + RNA INS - - TT rs58465113 alternate_allele TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . GTGTGTGTGTGTG 30 11 0.37 16 0 0 0 0 LOC644669 0 broad.mit.edu 37 18 15322956 15322962 + RNA DEL TTTATAC TTTATAC - novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 TTTATAC TTTATAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . TAAAAATTTATAC 7 2 0.29 11 0 0 0 0 MBD1 4152 mdanderson.org 37 18 47806263 47806263 + Missense_Mutation SNP A A G novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_015845 exon2 c.T100C p.Y34H GGTAATAGGTGTC 35 3 0.09 36 0 0 2 0 0.00 ZNF236 7776 mdanderson.org 37 18 74580818 74580818 + Missense_Mutation SNP A A G novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_007345 exon4 c.A535G p.R179G AAAATTAGGTATG 18 2 0.11 28 0 0 0 0 ATP9B 374868 mdanderson.org 37 18 76870489 76870489 + Missense_Mutation SNP T T C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_198531 exon3 c.T428C p.F143S ATGTGTTTACCTT 46 3 0.07 70 0 0 2 0 0.00 GRIN3B 116444 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 1004822 1004822 + Missense_Mutation SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_138690 exon3 c.C1322T p.A441V GCCCAGCGGGGCA 84 4 0.05 77 0 0 0 0 PNPLA6 10908 mdanderson.org 37 19 7615244 7615244 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001166111 exon17 c.G1902T p.M634I CAGGATGTCGCCC 50 3 0.06 51 0 0 13 0 0.00 MAP1S 55201 mdanderson.org 37 19 17838171 17838171 + Missense_Mutation SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_018174 exon5 c.C1978T p.R660W CCACTGCGGGGCG 24 3 0.13 20 0 0 77 0 0.00 ZNF208 7757 mdanderson.org 37 19 22157461 22157461 + Silent SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_007153 exon4 c.G375A p.V125V TTTGTGCACCTTA 114 5 0.04 116 0 0 2 0 0.00 DMKN 93099 mdanderson.org 37 19 35991442 35991442 + Missense_Mutation SNP T T A rs909072 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_033317 exon12 c.A1280T p.D427V TGATCGTCTCTGC 72 3 0.04 112 0 0 69 0 0.00 KLC3 147700 mdanderson.org 37 19 45849918 45849918 + Missense_Mutation SNP G G C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_177417 exon3 c.G375C p.E125D GGAGGAGACGCAG 18 2 0.11 41 0 0 2 0 0.00 AP2A1 160 mdanderson.org 37 19 50295218 50295218 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_130787 exon5 c.G500T p.S167I AGCAGAGTGCGGC 50 3 0.06 30 0 0 31 0 0.00 ZNF525 170958 broad.mit.edu 37 19 53879043 53879043 + Silent SNP T T C rs62115350 TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . ZNF525 . . . . CAGGGATGTGGCC 50 4 0.08 41 2 0.0487804878 35 1 0 0.00 . 400986 ucsc.edu 37 2 96643871 96643871 + Silent SNP T T C rs201215924 TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 ENSG00000174501,NS,carcinoma,0,2 . . . . . CTTACCTGGATTG 89 13 0.15 126 10 0.0793650794 2 0 0 WDR33 55339 mdanderson.org 37 2 128480869 128480869 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_018383 exon12 c.C1249A p.L417I GGTTTAGATTATA 103 5 0.05 108 0 0 4 0 0.00 TLK1 9874 broad.mit.edu 37 2 171911637 171911637 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . TLK1 NM_012290 exon7 c.C595A p.H199N TAGGGTGGTCCCC 568 6 0.01 602 1 0.0016611296 134 6 0 0.00 FAM182B 728882 hgsc.bcm.edu 37 20 25755549 25755549 + RNA SNP C C A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 FAM182B,colon,carcinoma,0,1 FAM182B . . . . CTGCAGCCTTCCT 65 6 0.09 70 2 0.0285714286 0 1 4 0 0.00 ZBTB46 140685 mdanderson.org 37 20 62421958 62421958 + Silent SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_025224 exon2 c.C153A p.G51G GCTGCTGCCCAGC 28 3 0.11 39 0 0 6 0 0.00 . 253143 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 32072978 32072978 + Missense_Mutation SNP G G C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . CTGTCAGTGCTCG 109 18 0.17 109 0 0 0 0 . 253143 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 32072995 32072995 + Missense_Mutation SNP A A C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . GCTAGAATCCAGG 91 16 0.18 103 0 0 0 0 CNTN4 152330 broad.mit.edu 37 3 3067877 3067877 + Silent SNP G G T rs375250470 alternate_allele TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 CNTN4_ENST00000418658,NS,carcinoma,0,2 CNTN4 NM_175607 exon15 c.G1578T p.S526S TCACTCGCTAGAC 216 5 0.02 176 1 0.0056818182 335 2 0 0 DCUN1D4 23142 broad.mit.edu 37 4 52777312 52777312 + Missense_Mutation SNP T T C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . DCUN1D4 NM_001040402 exon9 c.T692C p.L231P GGCCCCTTTTTCC 128 4 0.03 130 1 0.0076923077 26 5 0 0.00 ADH4 127 broad.mit.edu 37 4 100052899 100052899 + Missense_Mutation SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . ADH4 NM_000670 exon6 c.C599A p.T200N GCACAAGTCGAAC 66 3 0.05 70 0 0 35 0 0 PCDH18 54510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 138450831 138450831 + Silent SNP A A G novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_019035 exon1 c.T2412C p.S804S CACCAAACTGTTG 112 55 0.49 123 0 0 1 0 0.00 RBM46 166863 mdanderson.org 37 4 155718042 155718042 + Silent SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_144979 exon2 c.C138T p.G46G ATTTGGCGGTCCT 39 3 0.08 52 0 0 1 0 0.00 CAMK4 814 broad.mit.edu 37 5 110819728 110819728 + Missense_Mutation SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 CAMK4,NS,carcinoma,0,1 CAMK4 NM_001744 exon11 c.C986T p.A329V AGGCAGCGGTGAA 143 4 0.03 130 0 0 77 1 0 0 HLA-H 3136 hgsc.bcm.edu 37 6 29856882 29856882 + RNA SNP C C G novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . CAGCCTCCACTCA 66 5 0.08 42 0 0 2 0 0.00 TNXB 7148 mdanderson.org 37 6 32064279 32064279 + Missense_Mutation SNP C C A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_019105 exon3 c.G1351T p.V451F TGCAAACACACAC 19 2 0.11 17 0 0 0 0 DAAM2 23500 mdanderson.org 37 6 39869697 39869697 + Missense_Mutation SNP C C T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_001201427 exon25 c.C3091T p.R1031C GCCCTGCGCTCTG 47 3 0.06 44 0 0 0 0 . 0 broad.mit.edu 37 6 161326647 161326648 + RNA INS - - T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . TCTATTGTTTTTT 6 2 0.33 9 0 0 0 0 PMS2 5395 broad.mit.edu 37 7 6026444 6026444 + Missense_Mutation SNP T T C rs267608167 TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . PMS2 NM_000535 exon11 c.A1952G p.K651R CAAATCTTTGCCC 503 5 0.01 388 1 0.0025773196 88 15 0 0.00 EZH2 0 broad.mit.edu 37 7 148512600 148512600 + Missense_Mutation SNP T T C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . EZH2 NM_004456 exon13 c.A1544G p.K515R TAACCCTTTTTCA 394 6 0.02 315 0 0 823 87 0 0.00 MLLT3 4300 hgsc.bcm.edu 37 9 20414373 20414373 + Silent SNP G G A novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 MLLT3,NS,carcinoma,0,4 MLLT3 NM_004529 exon5 c.C471T p.S157S GCTGCTGCTACTG 60 5 0.08 49 1 0.0204081633 0 4 1 0 0.00 GRHPR 9380 mdanderson.org 37 9 37428556 37428556 + Silent SNP G G T novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_012203 exon5 c.G480T p.G160G CATCGGGCTGGGG 50 3 0.06 29 0 0 198 1 0.01 . 100289027 bcgsc.ca 37 9 45363836 45363836 + RNA SNP G G A rs199519540 bycluster TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . CAGAGCGGAACGC 33 7 0.21 34 0 0 0 0 PRRC2B 84726 broad.mit.edu 37 9 134305549 134305550 + Missense_Mutation DNP GC GC AG novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 GC GC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . PRRC2B NM_013318 exon1 c.C19G p.Q7E TTTGGGGCAAATT 217 6 0.03 140 0 0 266 4 0 0.00 . 0 bcgsc.ca 37 X 48306759 48306759 + RNA SNP A A C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . . . . . GATGGTAATTGTG 46 19 0.41 36 1 0.0277777778 0 0 SEPT6 23157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 118774680 118774680 + Silent SNP C C G novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_145802 exon6 c.G762C p.R254R ATACTGCCGCGCC 149 12 0.08 78 0 0 126 6 0.05 SAGE1 55511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 134993829 134993829 + Missense_Mutation SNP G G C novel TCGA-2G-AAFN-01A-31D-A42Y-10 TCGA-2G-AAFN-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ef2de696-2f9e-44e8-8445-af7a953aaa56 e4830f6d-72c5-4a5c-badb-a649ae2e82d7 . . NM_018666 exon18 c.G2238C p.E746D ACCAGAGCTGATA 255 49 0.19 141 0 0 0 0