Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV C1orf127 148345 broad.mit.edu 37 1 11014129 11014129 + Missense_Mutation SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . C1orf127 NM_001170754 exon10 c.C1046T p.A349V ATCTCGGCAAATT 406 8 0.02 347 0 0 134 2 0 0.00 . 0 bcgsc.ca 37 1 11940212 11940212 + RNA SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . ATGAAGCCTTGGA 61 15 0.25 43 0 0 0 0 PRAMEF1 65121 broad.mit.edu 37 1 12856083 12856084 + Frame_Shift_Ins INS - - C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . PRAMEF1 NM_023013 exon4 c.1363_1364insC p.T455fs GGCCCCACCCCCT 1405 0 0.00 1067 0 0 78 0 0 ALDH4A1 8659 mdanderson.org 37 1 19216599 19216599 + Silent SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_003748 exon2 c.C63A p.G21G CCGCAGGCTGGAA 60 5 0.08 28 0 0 17 0 0.00 LDLRAD2 401944 broad.mit.edu 37 1 22141108 22141108 + Silent SNP G G C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . LDLRAD2 NM_001013693 exon2 c.G303C p.P101P CTCCCCGGCCCCG 200 17 0.09 171 10 0.0584795322 17 0 0 FAAH 2166 mdanderson.org 37 1 46874212 46874212 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea FAAH,NS,carcinoma,-1,2 FAAH NM_001441 exon8 c.G1033T p.A345S AGGCGGGCCGTGC 115 5 0.04 134 0 0 -1 2 24 0 0.00 RCSD1 92241 hgsc.bcm.edu 37 1 167653179 167653179 + Missense_Mutation SNP T T C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_052862 exon2 c.T49C p.S17P TCGGCGTCCCCCT 102 6 0.06 83 0 0 19 0 0.00 MIR548F1 100302192 hgsc.bcm.edu 37 1 186287470 186287471 + RNA DNP AC AC CA novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 AC AC Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . AAAAAAACAAAAA 64 10 0.16 38 0 0 3 0 0.00 KIF21B 23046 mdanderson.org 37 1 200974466 200974466 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_017596 exon5 c.C702A p.C234X CATCTGGCACAGG 35 3 0.09 23 0 0 3 0 0.00 OBSCN 84033 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 228557931 228557931 + Missense_Mutation SNP T T A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . OBSCN NM_001271223 exon103 c.T23029A p.W7677R CACCCCTGGTTCC 190 7 0.04 181 0 0 2142 5 0 0.00 GNPAT 8443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 231403537 231403537 + Silent SNP A A T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_014236 exon9 c.A1167T p.I389I CCTAATAGTTGCT 138 35 0.25 149 0 0 135 42 0.31 HSD17B7P2 0 broad.mit.edu 37 10 38647315 38647315 + RNA SNP T T C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . CAGGAATATGAGC 148 3 0.02 146 0 0 13 0 0.00 CCAR1 55749 broad.mit.edu 37 10 70516152 70516152 + Missense_Mutation SNP G G A rs142459122 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CCAR1 NM_018237 exon14 c.G1748A p.R583H CCACCCGCTCAGA 155 4 0.03 157 0 0 118 98 0 0.00 ZNF503 84858 broad.mit.edu 37 10 77159836 77159836 + Silent SNP A A C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . ZNF503 NM_032772 exon2 c.T612G p.G204G CGAAACACCCCCG 50 11 0.22 60 14 0.2333333333 25 6 0 0.00 PIPSL 0 broad.mit.edu 37 10 95718362 95718365 + RNA DEL TTTC TTTC - novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 TTTC TTTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . TTTTCTTTTCTTT 18 11 0.61 22 0 0 1 0 0.00 CWF19L1 55280 broad.mit.edu 37 10 101997853 101997853 + Silent SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CWF19L1 NM_018294 exon11 c.C1180A p.R394R AGAACCGTCTCAG 226 5 0.02 206 0 0 39 75 0 0.00 PKD2L1 9033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 102052770 102052770 + Silent SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_016112 exon11 c.G1815A p.V605V CTTCTGCACATCC 223 61 0.27 227 0 0 0 0 BAG3 9531 broad.mit.edu 37 10 121432017 121432017 + Missense_Mutation SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . BAG3 NM_004281 exon3 c.A758G p.D253G AGGGGGATGACTG 165 4 0.02 114 1 0.0087719298 42 77 0 0.00 MUC6 4588 bcgsc.ca 37 11 1016801 1016801 + Missense_Mutation SNP G G C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . MUC6 NM_005961 exon31 c.C6000G p.H2000Q CTGAGGGTGTGAT 393 19 0.05 453 9 0.0198675497 408 11 0 0.00 MUC6 4588 bcgsc.ca 37 11 1017824 1017824 + Silent SNP G G C rs201767599 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . MUC6 NM_005961 exon31 c.C4977G p.L1659L GGCCTTGAGCGTT 311 20 0.06 317 5 0.0157728707 408 3 0 0.00 MUC2 4583 mdanderson.org 37 11 1093293 1093293 + Silent SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_002457 exon30 c.C5112G p.T1704T CACCACCACTACG 26 3 0.12 31 0 0 9 1 0.11 CTSD 1509 mdanderson.org 37 11 1775285 1775285 + Missense_Mutation SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_001909 exon7 c.C911T p.P304L TCCACCGGGCCCA 43 4 0.09 52 0 0 549 0 0.00 PACS1 55690 broad.mit.edu;mdanderson.org 37 11 66001320 66001320 + Missense_Mutation SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . PACS1 NM_018026 exon16 c.C1903G p.L635V AGCTACCTGAGCT 75 4 0.05 117 0 0 71 48 2 0.04 TAF1D 79101 broad.mit.edu 37 11 93469897 93469897 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . TAF1D NM_024116 exon5 c.C656A p.T219K AGATGTGTTGCAT 317 6 0.02 377 0 0 18 98 0 0.00 SCN4B 6330 broad.mit.edu 37 11 118015783 118015783 + Missense_Mutation SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . SCN4B NM_174934 exon2 c.G223A p.A75T TGAATGCGTCACT 129 4 0.03 164 0 0 18 5 0 0.00 DCP1B 196513 hgsc.bcm.edu 37 12 2062350 2062350 + Missense_Mutation SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea DCP1B,bladder,carcinoma,0,13 DCP1B NM_152640 exon7 c.G756C p.Q252H CTGCTGCTGGTGG 87 5 0.06 20 1 0.05 0 13 142 1 0.01 CD69 969 broad.mit.edu 37 12 9907234 9907234 + Missense_Mutation SNP T T C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CD69 NM_001781 exon4 c.A440G p.K147R GGTTCCTTTTTCA 610 4 0.01 236 0 0 23 3 0 0.00 C12orf36 283422 broad.mit.edu 37 12 13526327 13526327 + Silent SNP C C G rs146660868 alternate_allele TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . C12orf36 . . . . TACGAGCGCTCTG 556 8 0.01 180 0 0 17 0 0 GYS2 2998 broad.mit.edu 37 12 21693436 21693436 + Missense_Mutation SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . GYS2 NM_021957 exon14 c.G1717A p.G573R AAAATCCATAGAG 321 7 0.02 127 0 0 110 2 0 0.00 YARS2 51067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 32908276 32908276 + Missense_Mutation SNP T T C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_001040436 exon1 c.A533G p.Q178R TGCTTCTGGTACC 396 54 0.14 172 0 0 88 7 0.08 KRT3 3850 mdanderson.org 37 12 53189775 53189775 + Missense_Mutation SNP C C A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_057088 exon1 c.G52T p.G18C AGCGGCCGGAGAA 41 3 0.07 53 0 0 0 0 N4BP2L1 90634 mdanderson.org 37 13 32981884 32981884 + Missense_Mutation SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_052818 exon2 c.G205A p.A69T TCAGGGCCCTGGG 43 3 0.07 73 0 0 10 0 0.00 DCLK1 9201 mdanderson.org 37 13 36700232 36700232 + Missense_Mutation SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_004734 exon2 c.C43T p.R15W TATCCCGCTCGTC 35 3 0.09 45 0 0 5 0 0.00 CARS2 79587 mdanderson.org 37 13 111299558 111299558 + Silent SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_024537 exon11 c.C1083A p.L361L AGCTTGGAGCATG 37 3 0.08 58 0 0 70 0 0.00 ACIN1 22985 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 14 23549896 23549896 + Silent SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_001164814 exon6 c.G822A p.E274E CTCCTCCTCTTCT 156 8 0.05 109 0 0 83 1 0.01 MLH3 27030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 75508402 75508402 + Silent SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_014381 exon4 c.T3381C p.D1127D CACAGTATCTAGG 112 25 0.22 84 0 0 38 10 0.26 . 0 broad.mit.edu 37 15 52388055 52388056 + RNA DEL AG AG - rs74749622 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 AG AG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . TTAAACAGAGTTA 17 14 0.82 5 0 0 0 0 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 16 30748508 30748508 + Nonsense_Mutation SNP A A T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_006662 exon34 c.A7147T p.K2383X CGCAGTAAAAAGG 89 12 0.13 104 0 0 78 10 0.13 FAM101B 359845 broad.mit.edu 37 17 295717 295717 + Missense_Mutation SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . FAM101B . . . . AGGGGGAGAGACG 618 6 0.01 470 1 0.0021276596 19 10 0 0.00 SHISA6 388336 broad.mit.edu;mdanderson.org 37 17 11145253 11145253 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . SHISA6 NM_207386 exon1 c.G514T p.D172Y GAGAAGGACAAGA 39 4 0.10 47 0 0 44 2 0 0.00 BTBD17 388419 mdanderson.org 37 17 72353826 72353826 + Missense_Mutation SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_001080466 exon3 c.T407C p.I136T AGGGGGATGGCCT 50 3 0.06 44 0 0 2 0 0.00 CASKIN2 57513 broad.mit.edu 37 17 73498806 73498806 + Silent SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CASKIN2 NM_020753 exon18 c.C2349C p.S783S AGGGGGCCCGGCC 54 5 0.09 52 6 0.1153846154 66 43 8 0.19 QRICH2 84074 mdanderson.org 37 17 74274126 74274126 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_032134 exon15 c.C4563A p.S1521R TATCTGGCTGCTG 37 3 0.08 27 0 0 14 0 0.00 CCDC40 55036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 78023947 78023947 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_017950 exon7 c.C1024T p.Q342X CACCTGCAGAAGC 86 18 0.21 104 0 0 9 3 0.33 MED16 10025 broad.mit.edu;mdanderson.org 37 19 889725 889725 + Missense_Mutation SNP G G C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . MED16 NM_005481 exon4 c.C360G p.S120R CACTGAGCTCTCC 114 5 0.04 147 0 0 61 125 0 0.00 PCSK4 54760 hgsc.bcm.edu 37 19 1482012 1482012 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_017573 exon15 c.C2014A p.P672T AGGATGGGGGACA 26 4 0.15 27 0 0 3 0 0.00 ZFR2 23217 broad.mit.edu;mdanderson.org 37 19 3822136 3822136 + Missense_Mutation SNP G G C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . ZFR2 NM_015174 exon9 c.C1434G p.N478K AAGGTCGTTGAAA 68 4 0.06 64 0 0 63 1 0 0.00 SYCE2 256126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13011447 13011447 + Missense_Mutation SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_001105578 exon4 c.G322C p.E108Q ATTTCTCTGTCAG 103 17 0.17 119 0 0 10 2 0.20 FAM32A 26017 broad.mit.edu 37 19 16296279 16296279 + Missense_Mutation SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . FAM32A NM_014077 exon1 c.A26G p.K9R TCCAAAAGGGACC 127 4 0.03 181 1 0.0055248619 6 289 0 0.00 ANKLE1 126549 broad.mit.edu 37 19 17397498 17397501 + Frame_Shift_Del DEL TGTT TGTT - rs35771129 alternate_allele TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 TGTT TGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . ANKLE1 . . . . TGTGTGTGTTTGT 14 11 0.79 19 0 0 27 3 0 0.00 FAM187B 148109 mdanderson.org 37 19 35716025 35716025 + Silent SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_152481 exon2 c.C813A p.T271T GCCGCCGGTGGAG 49 3 0.06 46 0 0 0 0 CAPNS1 826 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CAPNS1 NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 115 8 0.07 65 1 0.0153846154 19 2 0 0.00 ARHGEF1 9138 mdanderson.org 37 19 42409964 42409964 + Missense_Mutation SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea ARHGEF1,NS,carcinoma,-2,1 ARHGEF1 NM_199002 exon25 c.A2434G p.T812A CGAGAGACGTCTC 46 3 0.07 73 1 0.0136986301 -2 1 157 1 0.01 YWHAQ 10971 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 9725475 9725475 + Splice_Site SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . YWHAQ NM_006826 exon7 c.679-1G>C . CCAAAGCTAGAAA 414 13 0.03 231 0 0 14 4 0 0.00 NT5C1B 93034 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 18765887 18765887 + Missense_Mutation SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea NT5C1B,NS,carcinoma,0,1 NT5C1B NM_001199087 exon5 c.G847C p.E283Q GCTGCTCGGACAG 141 10 0.07 79 0 0 0 1 1 0 0.00 SOS1 6654 broad.mit.edu 37 2 39213243 39213243 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . SOS1 NM_005633 exon23 c.3724delA p.S1242fs GGTCACTTTTTTT 589 9 0.02 259 0 0 134 185 0 0.00 SOS1 6654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 39224171 39224171 + Missense_Mutation SNP A A T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_005633 exon19 c.T2973A p.F991L GTTTTCAAAGAAC 235 23 0.10 87 0 0 114 14 0.12 RNF103-CHMP3 100526767 mdanderson.org 37 2 86737587 86737587 + Missense_Mutation SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_001198954 exon6 c.C389T p.A130V GAACCAGCCACTC 50 3 0.06 59 0 0 180 0 0.00 ANKRD20A8P 0 broad.mit.edu 37 2 95518674 95518674 + RNA DEL G G - novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . AAAAAAGAATAAC 7 3 0.43 7 0 0 0 0 CDK15 65061 broad.mit.edu 37 2 202688417 202688417 + Missense_Mutation SNP G G C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CDK15 NM_001261435 exon6 c.G573C p.Q191H GTCTCAGCATCCA 149 4 0.03 120 0 0 66 3 0 0.00 SLC4A3 6508 broad.mit.edu 37 2 220503458 220503458 + Missense_Mutation SNP T T C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . SLC4A3 NM_201574 exon19 c.T2971C p.S991P GTGACCTCTCCCG 107 3 0.03 81 1 0.012345679 144 47 0 0.00 CDH22 64405 broad.mit.edu 37 20 44879773 44879773 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CDH22 NM_021248 exon2 c.C161A p.A54E CCCAGCGCGCCGT 120 3 0.03 75 0 0 112 0 0 GNAS 2778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57485046 57485046 + Missense_Mutation SNP C C G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_080425 exon11 c.C2809G p.Q937E AACAAGCAAGATC 104 25 0.24 107 0 0 4628 1556 0.34 BAGE 85319 broad.mit.edu 37 21 11081137 11081137 + RNA DEL C C - novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . AAAAAACAAAACT 7 7 1.00 5 0 0 0 0 TFF3 7033 broad.mit.edu 37 21 43733726 43733726 + Missense_Mutation SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . TFF3 NM_003226 exon2 c.C140T p.A47V GGCACGGCACACT 91 4 0.04 71 0 0 9 229 0 0.00 GGT3P 0 broad.mit.edu 37 22 18770143 18770144 + RNA INS - - T rs112524868 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . TTAATTGTTTTTT 9 3 0.33 6 0 0 0 0 TRABD 80305 mdanderson.org 37 22 50633425 50633425 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_025204 exon5 c.G376T p.A126S CGGGAGGCCCAGG 37 3 0.08 39 0 0 33 0 0.00 ITPR1 3708 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 4774832 4774832 + Silent SNP C C A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea ITPR1_ENST00000357086,NS,carcinoma,0,3 ITPR1_ENST00000357086 NM_001168272 exon42 c.C5236A p.R1746R TCGGGACGAAGAG 127 7 0.06 109 0 0 0 3 20 0 0.00 SPCS1 28972 mdanderson.org 37 3 52740155 52740155 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_014041 exon1 c.G94T p.A32S GGCCCGGCTACTG 53 3 0.06 32 0 0 290 0 0.00 C3orf49 132200 hgsc.bcm.edu 37 3 63823517 63823517 + RNA SNP T T G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . TAGTTTTAAGGAA 56 16 0.29 38 0 0 0 0 EBLN2 55096 hgsc.bcm.edu 37 3 73111480 73111480 + Missense_Mutation SNP A A C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_018029 exon1 c.A248C p.N83T GGAAAAACAGACA 225 9 0.04 158 0 0 4 0 0.00 SENP7 57337 broad.mit.edu 37 3 101066800 101066800 + Missense_Mutation SNP G G A rs201608850 by1000genomes;alternate_allele TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . SENP7 NM_020654 exon13 c.C1753T p.H585Y TAGCATGACTCCT 413 8 0.02 238 0 0 170 38 1 0.03 PDS5A 23244 mdanderson.org 37 4 39875970 39875970 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea PDS5A,NS,carcinoma,0,1 PDS5A NM_001100399 exon20 c.C2216A p.A739D TGCACAGCCTGTT 140 5 0.04 173 0 0 0 1 83 0 0.00 NAA15 80155 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 140270698 140270698 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . NAA15 NM_057175 exon7 c.G774T p.W258C AAACTGGGCCTAT 292 16 0.05 378 1 0.0026455026 88 27 0 0.00 . 0 broad.mit.edu 37 4 159198730 159198732 + RNA DEL AAG AAG - novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 AAG AAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . AGAGTCAAGAAAC 7 5 0.71 4 0 0 0 0 TNPO1 3842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 72168496 72168496 + Missense_Mutation SNP T T A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_002270 exon7 c.T627A p.F209L TCAGTTTATCATC 97 79 0.81 129 0 0 68 62 0.91 PCDHA6 56142 mdanderson.org 37 5 140209305 140209305 + Silent SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea PCDHA6_ENST00000529310,rectum,carcinoma,0,6 PCDHA6_ENST00000529310 NM_018909 exon1 c.G1629A p.P543P CGTGCCGCCTCTG 39 3 0.08 45 0 0 0 6 8 0 0.00 FAM193B 54540 broad.mit.edu;mdanderson.org 37 5 176963683 176963683 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . FAM193B NM_001190946 exon4 c.C752A p.P251H CCGGTGGGGCTGT 32 3 0.09 53 0 0 28 54 0 0.00 BTN2A3P 0 broad.mit.edu;ucsc.edu;mdanderson.org 37 6 26431466 26431466 + RNA SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . TCTTATGACAGCC 161 57 0.35 160 1 0.00625 8 0 0.00 HTR1E 3354 broad.mit.edu 37 6 87725556 87725556 + Silent SNP T T C novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . HTR1E NM_000865 exon2 c.T504C p.P168P AAGCCCTCCCCCT 140 5 0.04 156 3 0.0192307692 89 1 0 0.00 ENPP3 5169 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 131971271 131971271 + Missense_Mutation SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . ENPP3 NM_005021 exon3 c.G259T p.D87Y TTTGAAGACACCT 250 63 0.25 198 2 0.0101010101 117 1 1 1.00 ZNF12 7559 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 6730638 6730638 + Missense_Mutation SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_016265 exon5 c.G1935A p.M645I GTATGACATCCGA 137 7 0.05 114 0 0 82 6 0.07 . 0 bcgsc.ca 37 7 64559077 64559077 + RNA SNP G G A rs79621273 bycluster TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . AAATTTGAAGGCC 26 7 0.27 18 1 0.0555555556 1 0 0.00 . 0 bcgsc.ca 37 7 64559088 64559088 + RNA SNP G G A rs73369160 bycluster TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . CCATGCGAATGAT 31 9 0.29 28 4 0.1428571429 1 0 0.00 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . TCTTGCGCAGAAT 188 6 0.03 127 1 0.0078740157 18 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . CCGGGGTCCTTGA 183 6 0.03 127 1 0.0078740157 0 0 MUC17 140453 hgsc.bcm.edu 37 7 100678866 100678866 + Missense_Mutation SNP A A C rs77700763 bycluster TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea MUC17,trunk,malignant_melanoma,0,1 MUC17 NM_001040105 exon3 c.A4169C p.N1390T ACTCAAATCCTAG 128 8 0.06 100 1 0.01 0 1 13 0 0.00 MUC17 140453 hgsc.bcm.edu 37 7 100678918 100678918 + Silent SNP G G A rs200627718 byfrequency TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea MUC17,colon,carcinoma,+1,1 MUC17 NM_001040105 exon3 c.G4221A p.P1407P CACGCCGGTAGTC 148 7 0.05 109 2 0.0183486239 0.002 1 1 13 1 0.08 MUC17 140453 broad.mit.edu 37 7 100678988 100678988 + Missense_Mutation SNP G G A novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea MUC17,NS,carcinoma,0,2 MUC17 NM_001040105 exon3 c.G4291A p.A1431T ACTTCTGCTGAAG 144 6 0.04 94 0 0 804 2 13 0 0.00 CUX1 1523 broad.mit.edu 37 7 101843351 101843351 + Splice_Site SNP G G T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . CUX1 NM_001202543 exon17 c.G1994T p.G665V CCACAGGTAACAT 176 6 0.03 161 0 0 253 16 0 0.00 SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 149513025 149513025 + Missense_Mutation SNP C C A rs369846479 alternate_allele TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_198455 exon77 c.C10928A p.P3643Q ACTGCCCGGACCC 140 15 0.11 164 0 0 2 0 0.00 TUSC3 7991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 15517060 15517060 + Silent SNP A A G novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . NM_178234 exon4 c.A471G p.K157K TCCAAAAGGCAGA 87 29 0.33 72 0 0 387 103 0.27 DCAF13 25879 broad.mit.edu 37 8 104439486 104439487 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . DCAF13 . . . . GGTAATGTTTTTT 272 0 0.00 173 0 0 66 2 0 0.00 RRAGA 10670 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 19050445 19050453 + In_Frame_Del DEL TCGACATCT TCGACATCT - novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 TCGACATCT TCGACATCT Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . RRAGA NM_006570 exon1 c.787_795del p.263_265del CTTTCATCGACAT 104 53 0.51 109 0 0 17 168 0 0.00 . 441420 bcgsc.ca 37 9 45376198 45376198 + RNA SNP G G A rs146422224 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . CGGCTCGCGGACC 31 8 0.26 59 0 0 0 0 FBXW5 54461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139835465 139835465 + Missense_Mutation SNP C C T rs140846203 TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea FBXW5,NS,carcinoma,-1,1 FBXW5 NM_018998 exon9 c.G1616A p.R539H GGGGAGCGCCAGG 92 28 0.30 66 0 0 0 -1 1 298 94 0.32 tRNA-Trp 0 hgsc.bcm.edu 37 MT 5552 5552 + RNA SNP C C T novel TCGA-2G-AAFJ-01A-11D-A42Y-10 TCGA-2G-AAFJ-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq c7ec7db5-2a0a-4300-aedc-f26b90255648 5bc449b5-fc22-49d0-9145-887f4c16e2ea . . . . . . AAAGCCCTCAGTA 112 101 0.90 101 0 0 0 0