Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV AIM1L 55057 bcgsc.ca 37 1 26669776 26669776 + Silent SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . AIM1L NM_001039775 exon3 c.C2922A p.A974A CTTTAAGGCTGGG 107 0 0.00 54 0 0 98 0 0 COL8A2 1296 broad.mit.edu 37 1 36564613 36564613 + Silent SNP A A C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . COL8A2 NM_005202 exon2 c.T669G p.G223G GGGGGCACCCCCC 135 15 0.11 84 1 0.0119047619 41 15 0 0.00 LPHN2 23266 broad.mit.edu;bcgsc.ca 37 1 82436031 82436031 + Missense_Mutation SNP T T A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . LPHN2 NM_012302 exon14 c.T2716A p.F906I CTACACTTTTTCT 153 5 0.03 110 0 0 464 1 0 0.00 NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + Splice_Site SNP G G A rs75226570 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . NBPF10 . . . . ACAACAGTAAGTT 58 7 0.12 26 0 0 221 4 0 0.00 MTX1 4580 mdanderson.org 37 1 155178986 155178986 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_198883 exon1 c.A391G p.R131G GGGCCCAGGCAGG 40 3 0.08 30 0 0 0 0 SH2D2A 9047 mdanderson.org 37 1 156777073 156777073 + Missense_Mutation SNP T T G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c SH2D2A_ENST00000392306,right_upper_lobe,carcinoma,0,2 SH2D2A_ENST00000392306 NM_001161441 exon8 c.A1097C p.H366P GGCTGGTGGGGCA 24 13 0.54 10 5 0.5 0 2 26 0 0.00 OR10J1 26476 bcgsc.ca 37 1 159410279 159410279 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c OR10J1,NS,carcinoma,+1,1 OR10J1 NM_012351 exon1 c.G731A p.R244Q AGGGCCGGAAGAA 151 0 0.00 108 1 0.0092592593 118 1 0 0 PPOX 5498 broad.mit.edu 37 1 161138882 161138882 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . PPOX NM_001122764 exon7 c.C716A p.A239D CTCAGGCCCTTGA 81 5 0.06 46 1 0.0217391304 34 37 0 0.00 EPRS 2058 mdanderson.org 37 1 220178702 220178702 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_004446 exon16 c.C1951A p.H651N CTTCATGCTGTAA 49 3 0.06 21 0 0 79 0 0.00 HLX 3142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 221054636 221054636 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_021958 exon2 c.C693G p.N231K CATTAACGAGGCT 206 24 0.12 147 0 0 13 0 0.00 OBSCN 84033 mdanderson.org 37 1 228462511 228462511 + Silent SNP C C T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001271223 exon24 c.C7047T p.G2349G TGAGGGCGCCTCA 36 3 0.08 28 0 0 0 0 ARID4B 51742 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235345007 235345007 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . ARID4B NM_016374 exon20 c.G3227C p.G1076A AGCTCCCCAGCAA 99 17 0.17 86 1 0.011627907 142 26 5 0.19 . 0 broad.mit.edu 37 10 5325578 5325578 + RNA DEL C C - novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . GTCAAACAACTGC 10 5 0.50 4 0 0 0 0 TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70412305 70412305 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_030625 exon6 c.C4415G p.T1472S TGTACACCGGTAA 112 13 0.12 72 0 0 22 5 0.23 PTDSS2 81490 mdanderson.org 37 11 489457 489457 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_030783 exon9 c.G912T p.E304D CTTCGAGTGGAAG 42 3 0.07 37 0 0 81 0 0.00 ABCC8 6833 hgsc.bcm.edu 37 11 17464362 17464362 + Missense_Mutation SNP T T C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_000352 exon10 c.A1535G p.Y512C CAGGCGTACAGCT 68 4 0.06 56 0 0 0 0 RPLP0P2 0 broad.mit.edu 37 11 61405030 61405030 + RNA SNP T T A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TGCTGCTGCAGCC 131 4 0.03 102 1 0.0098039216 11 0 0.00 ADRBK1 156 mdanderson.org 37 11 67034243 67034243 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001619 exon1 c.G73T p.A25S ACGCCGGCCGCGC 15 3 0.20 13 0 0 46 0 0.00 ADAMTS8 11095 mdanderson.org 37 11 130297477 130297477 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_007037 exon1 c.C705A p.Y235X GGCCCCGTAGAAG 19 2 0.11 12 0 0 0 0 KRT8 3856 bcgsc.ca 37 12 53298699 53298699 + Missense_Mutation SNP G G A rs201807576 byfrequency TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c KRT8,colon,carcinoma,0,2 KRT8 NM_001256282 exon2 c.C151T p.R51C AGGAGCGGCTGCT 44 0 0.00 30 0 0 41 2 22 0 0.00 MARCH9 92979 mdanderson.org 37 12 58152628 58152628 + Missense_Mutation SNP G G T rs146323526 bycluster;by1000genomes;alternate_allele TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_138396 exon4 c.G989T p.R330L ATGCCCGTTCCAG 97 4 0.04 56 0 0 70 0 0.00 NCOR2 9612 mdanderson.org 37 12 124827604 124827604 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_006312 exon35 c.T4883C p.I1628T AGGGGGATGTGGC 56 3 0.05 53 0 0 42 0 0.00 TRIM13 10206 hgsc.bcm.edu 37 13 50588490 50588490 + RNA SNP T T C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TATATATATATAT 32 6 0.19 22 0 0 0 0 TRIM13 10206 hgsc.bcm.edu 37 13 50588492 50588492 + RNA SNP T T C rs200626518 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TATATATATATAC 31 7 0.23 22 0 0 0 0 TRIM13 10206 hgsc.bcm.edu 37 13 50588494 50588494 + RNA SNP T T C rs201280640 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TATATATATACAC 31 8 0.26 26 0 0 0 0 C13orf35 400165 bcgsc.ca 37 13 113333688 113333688 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . C13orf35 . . . . GACCTTGTTAGGA 51 0 0.00 45 0 0 13 2 0 0.00 CUL4A 8451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 13 113898807 113898807 + Missense_Mutation SNP A A T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001008895 exon12 c.A1312T p.I438F ATCATGATCCTGT 265 25 0.09 213 0 0 52 11 0.21 GALC 2581 mdanderson.org 37 14 88459491 88459491 + Silent SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_000153 exon1 c.C18A p.L6L AGCCGAGAGTAGC 52 3 0.06 30 1 0.0333333333 0 0 . 0 broad.mit.edu 37 14 106691798 106691800 + RNA DEL AAC AAC - novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 AAC AAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . ATATGTAACTACT 237 23 0.10 157 0 0 219 0 0.00 . 56476 bcgsc.ca 37 15 22692049 22692049 + RNA SNP G G A rs9630507 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . AAGCCAGCCTGAG 73 19 0.26 48 4 0.0833333333 0 0 TPSB2 64499 mdanderson.org 37 16 1278707 1278707 + Nonsense_Mutation SNP G G T rs369177468 alternate_allele TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_024164 exon7 c.C771A p.Y257X ACGGGTGTAGATG 174 5 0.03 145 0 0 10 0 0.00 PKMYT1 9088 broad.mit.edu 37 16 3026798 3026798 + Missense_Mutation SNP A A C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . PKMYT1 NM_182687 exon3 c.T245G p.V82G AATGACACCCGCC 83 19 0.23 79 8 0.1012658228 23 75 4 0.05 MAZ 4150 mdanderson.org 37 16 29820974 29820974 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001042539 exon5 c.G1393T p.A465S ACCCCTGCCCAGC 29 3 0.10 39 0 0 159 0 0.00 ATP2A3 489 mdanderson.org 37 17 3851124 3851124 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_174958 exon8 c.C656T p.A219V CCCACCGCTTTGC 12 2 0.17 13 0 0 46 0 0.00 C1QBP 708 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 5336638 5336638 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . C1QBP NM_001212 exon5 c.C674T p.T225I TTGAGTGTATAAT 210 7 0.03 136 0 0 12 1426 42 0.03 AIPL1 23746 mdanderson.org 37 17 6329080 6329080 + Silent SNP C C T rs371635123 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_014336 exon6 c.G855A p.A285A GAGGTCCGCCTTG 35 3 0.09 38 0 0 6 0 0.00 FXR2 9513 broad.mit.edu 37 17 7496130 7496130 + Missense_Mutation SNP T T G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . FXR2 NM_004860 exon14 c.A1611C p.E537D GGGGGGTTCCCCA 110 11 0.10 111 9 0.0810810811 44 56 0 0.00 DNAH9 1770 mdanderson.org 37 17 11797775 11797775 + Missense_Mutation SNP G G A rs139641473 byfrequency TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001372 exon59 c.G11368A p.V3790M AGCCCCGTGGAGT 57 3 0.05 57 0 0 0 0 0 KIAA0100 9703 broad.mit.edu;mdanderson.org 37 17 26970628 26970628 + Splice_Site SNP G G T rs150640676 alternate_allele TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . KIAA0100 NM_014680 exon3 c.C248A p.P83Q ACTCACGGAAGAT 102 4 0.04 58 0 0 175 24 0 0.00 RHOT1 55288 bcgsc.ca 37 17 30536465 30536465 + Splice_Site SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . RHOT1 NM_001033568 exon19 c.1835+1G>T . TGCTTTGTAAGTT 52 0 0.00 31 0 0 69 1 0 0.00 FMNL1 752 mdanderson.org 37 17 43318982 43318982 + Silent SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_005892 exon14 c.G1566A p.P522P GGTGCCGACCGGC 44 3 0.07 18 0 0 70 0 0.00 LUC7L3 51747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48821082 48821082 + Missense_Mutation SNP T T A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_006107 exon6 c.T442A p.S148T TTAGGGTCTGAAG 209 24 0.11 139 0 0 277 76 0.27 DSC1 1823 broad.mit.edu 37 18 28710564 28710564 + Silent SNP G G A rs140362700 bycluster;byfrequency;by1000genomes TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . DSC1 NM_024421 exon16 c.C2598T p.S866S CCGATCGCTGCAG 209 5 0.02 149 0 0 240 0 0 SAFB 6294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 5667118 5667118 + Missense_Mutation SNP G G T rs201604799 by1000genomes;alternate_allele TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_002967 exon18 c.G2396T p.G799V GCTGGGGGGGCTA 178 27 0.15 124 0 0 459 130 0.28 MAST3 23031 broad.mit.edu 37 19 18260116 18260116 + Silent SNP A A C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . MAST3 NM_015016 exon27 c.A3510C p.P1170P TGGGCCACCCCGC 70 14 0.20 47 6 0.1276595745 83 11 1 0.09 SIX5 147912 bcgsc.ca 37 19 46268979 46268979 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . SIX5 NM_175875 exon3 c.C2000T p.A667V AGCCCTGCTGACC 68 0 0.00 32 0 0 35 56 0 0.00 ZNF765 91661 mdanderson.org 37 19 53905414 53905414 + Missense_Mutation SNP C C A rs375081702 alternate_allele TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001040185 exon3 c.C112A p.L38M GTGATGCTGGAGA 60 3 0.05 47 0 0 2 0 0.00 . 0 broad.mit.edu 37 2 38709548 38709548 + RNA DEL G G - novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TCCTTTGGGCTGG 196 20 0.10 148 0 0 3247 0 0.00 EPAS1 2034 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 46583327 46583327 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001430 exon3 c.G255T p.Q85H TGACCAGCAGATG 115 5 0.04 76 0 0 22 0 0.00 FAHD2CP 729234 hgsc.bcm.edu 37 2 96685052 96685052 + RNA SNP T T G rs372044509 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . GCAGAGTCCCCAG 56 8 0.14 46 0 0 23 3 0.13 LRP2 4036 broad.mit.edu 37 2 169993970 169993970 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . LRP2 NM_004525 exon76 c.C13552A p.P4518T TTATGGGCTGCTT 135 6 0.04 81 1 0.012345679 751 0 0 PTPRN 5798 broad.mit.edu 37 2 220162683 220162683 + Missense_Mutation SNP G G T rs375078153 alternate_allele TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . PTPRN NM_002846 exon13 c.C1811A p.A604E TGCCGCGCATGCT 162 4 0.02 129 0 0 138 1 0 0.00 MAVS 57506 mdanderson.org 37 20 3846444 3846444 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_020746 exon7 c.G1273A p.A425T GTGCTGGCATCCC 95 4 0.04 59 0 0 8 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29623214 29623214 + Missense_Mutation SNP C C T rs367590609 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . FRG1B . . . . TGCACTCGACAAT 511 21 0.04 325 9 0.0276923077 181 124 2 0.02 GADL1 339896 broad.mit.edu 37 3 30875385 30875385 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . GADL1 NM_207359 exon11 c.C1010A p.A337D ATCCCAGCCATCA 215 4 0.02 158 0 0 91 0 0 SLC22A14 9389 mdanderson.org 37 3 38354566 38354566 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c SLC22A14,rectum,carcinoma,0,1 SLC22A14 NM_004803 exon5 c.G1021A p.A341T TACGCCGCAAGTG 102 5 0.05 89 1 0.0112359551 0 1 0 0 ACVR2B 93 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 38518867 38518867 + Missense_Mutation SNP C C T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001106 exon2 c.C142T p.R48C CTGGAGCGCTGCG 87 11 0.13 80 0 0 3 1 0.33 ARIH2 10425 broad.mit.edu;mdanderson.org 37 3 49020649 49020649 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . ARIH2 NM_006321 exon16 c.G1428T p.M476I CCAGATGCATATA 51 4 0.08 56 0 0 32 241 0 0.00 MED12L 116931 broad.mit.edu;mdanderson.org 37 3 151093929 151093929 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . MED12L NM_053002 exon26 c.G3875A p.C1292Y TTATCTGTTATCC 112 10 0.09 66 1 0.0151515152 271 4 0 0.00 MUC4 4585 broad.mit.edu 37 3 195517978 195517978 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c MUC4_ENST00000463781,NS,carcinoma,0,2 MUC4 NM_018406 exon2 c.G473C p.G158A TCAGTTCCTGCTG 136 3 0.02 109 1 0.0091743119 1505 2 0 0 STK32B 55351 mdanderson.org 37 4 5418660 5418660 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_018401 exon6 c.G561T p.M187I CTACATGGGTGAG 35 3 0.09 28 0 0 0 0 SEPT11 55752 mdanderson.org 37 4 77926924 77926924 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_018243 exon3 c.G313T p.G105X GGATTTGGAGACC 91 5 0.05 89 0 0 24 0 0.00 SEMA5A 9037 mdanderson.org 37 5 9054225 9054225 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_003966 exon19 c.C2663A p.A888E CAGAGTGCCTCTT 40 3 0.08 26 0 0 0 0 . 0 bcgsc.ca 37 5 51227580 51227580 + RNA SNP C C T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . AGTTTACAGGGAG 38 1 0.03 30 0 0 0 0 MAP1B 4131 broad.mit.edu 37 5 71495566 71495566 + Silent SNP A A G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . MAP1B NM_005909 exon5 c.A6384G p.G2128G AGGGGGAGCCCCA 148 3 0.02 146 0 0 243 8 0 0.00 MCC 4163 mdanderson.org 37 5 112824069 112824069 + Missense_Mutation SNP T T C rs201571604 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001085377 exon1 c.A43G p.S15G CGCCGCTGCTGGA 8 3 0.38 11 0 0 0 0 PROB1 389333 mdanderson.org 37 5 138728419 138728419 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001161546 exon1 c.C2352A p.S784R GGATGAGCTGCGG 28 3 0.11 46 0 0 2 0 0.00 ARAP3 64411 bcgsc.ca 37 5 141059566 141059566 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . ARAP3 NM_022481 exon2 c.T488C p.L163P GAGTCCAGGCCGA 81 0 0.00 76 0 0 139 2 0 0.00 SLC34A1 6569 mdanderson.org 37 5 176824902 176824902 + Missense_Mutation SNP G G A rs141898673 TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c SLC34A1,middle_lobe,carcinoma,+1,1 SLC34A1 NM_003052 exon13 c.G1535A p.R512H AGTACCGCTGGTT 53 3 0.06 62 0 0 0 1 1 0 0 DEK 7913 hgsc.bcm.edu;mdanderson.org 37 6 18264096 18264096 + Missense_Mutation SNP C C G rs147127829 bycluster;byfrequency;by1000genomes TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_003472 exon2 c.G123C p.E41D CTCCTCCTCGTCG 145 8 0.06 113 0 0 0.001 58 1 0.02 HIST1H2AI 8329 broad.mit.edu 37 6 27776148 27776148 + Missense_Mutation SNP C C T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . HIST1H2AI NM_003509 exon1 c.C161T p.A54V TGGCGGCGGTGCT 186 10 0.05 131 0 0 9 84 11 0.13 GPX5 2880 bcgsc.ca 37 6 28500116 28500116 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c GPX5,NS,carcinoma,0,1 GPX5 NM_003996 exon3 c.A260G p.E87G AGGGGGAGGATTT 166 6 0.04 85 1 0.0117647059 42 1 0 0 B3GALT4 8705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 33245604 33245604 + Silent SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_003782 exon1 c.G408T p.G136G CCAGGGGGATATC 85 10 0.12 44 0 0 13 0 0.00 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33652420 33652420 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_002224 exon38 c.C5092G p.R1698G CAGAACCGGAAGT 158 24 0.15 121 0 0 42 11 0.26 RUNX2 860 hgsc.bcm.edu 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c RUNX2_ENST00000352853,NS,carcinoma,0,2 RUNX2_ENST00000352853 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG 23 2 0.09 21 1 0.0476190476 0 2 1 0 0.00 PMS2CL 0 broad.mit.edu 37 7 6786128 6786128 + RNA DEL A A - novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TGTCTCAAAAAAA 8 3 0.38 7 0 0 1 0 0.00 GLI3 2737 mdanderson.org 37 7 42005903 42005903 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c GLI3,NS,carcinoma,+1,1 GLI3 NM_000168 exon15 c.C2768A p.P923H TGGGCGGGCGTGA 51 3 0.06 27 0 0 1 1 0 0 INTS4L2 0 broad.mit.edu 37 7 65139108 65139109 + RNA INS - - A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . CAGGAAGAAAAAA 9 3 0.33 4 0 0 0 0 RAB19 401409 broad.mit.edu 37 7 140125883 140125883 + Missense_Mutation SNP T T C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . RAB19 NM_001008749 exon4 c.T587C p.L196P ACGGCCTCCCCCT 180 4 0.02 99 1 0.0101010101 21 5 0 0.00 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 103277378 103277378 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_015902 exon53 c.G7551T p.R2517S GCCAGGCCTTGGA 176 16 0.09 115 0 0 96 27 0.28 SPATA31D4 0 broad.mit.edu 37 9 84545116 84545116 + RNA DEL C C - novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . CGCCTTCTTTTTT 104 6 0.06 68 0 0 0 0 ZNF782 158431 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 99581871 99581871 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001001662 exon6 c.G434T p.C145F CCCTGGCAAGCAG 108 8 0.07 64 0 0 3 1 0.33 TTF1 7270 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 135275424 135275424 + Missense_Mutation SNP T T C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_007344 exon3 c.A1589G p.Q530R TCACCTTGTGCTT 243 21 0.09 149 0 0 21 7 0.33 NDOR1 27158 mdanderson.org 37 9 140110832 140110832 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001144026 exon14 c.G1785T p.Q595H GCTCCAGCAGACA 33 3 0.09 27 0 0 48 0 0.00 MAP7D2 256714 mdanderson.org 37 X 20074871 20074871 + Silent SNP G G T novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001168466 exon4 c.C411A p.R137R CTGTGTGCGCTCC 46 3 0.07 30 0 0 34 0 0.00 NAP1L3 4675 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 92927246 92927246 + Missense_Mutation SNP G G C novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . NAP1L3 NM_004538 exon1 c.C1058G p.P353R CTTACAGGCTGGC 149 34 0.23 98 1 0.0102040816 81 21 9 0.43 ABCD1 215 bcgsc.ca 37 X 152991228 152991228 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . ABCD1 NM_000033 exon1 c.C507A p.H169Q GGCCCACGCCTAC 72 3 0.04 58 0 0 59 10 0 0.00 PLXNB3 5365 mdanderson.org 37 X 153039024 153039024 + Silent SNP G G A novel TCGA-2G-AAFG-05A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 207b80ef-28bf-4aa9-9a50-448ae72536f2 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001163257 exon20 c.G3204A p.R1068R GCAGCGGCCCCTA 54 3 0.06 44 0 0 0 0