Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
RDH16	0	genome.wustl.edu	37	12	57346713	57346713	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	12	57346713	57346713	C	T	SNP	RDH16	ENST00000398138	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH16	HGNC	ENSG00000139547	tier1	-	-	23	0	0.00	24	10	29.41	91	0	0.00	97	100	50.76
FIBCD1	0	genome.wustl.edu	37	9	133779553	133779553	+	Silent	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	9	133779553	133779553	G	A	SNP	FIBCD1	ENST00000372338	human	ensembl	74_37	-1	known	silent	c.1284	p.H428	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FIBCD1	HGNC	ENSG00000130720	tier1	-	-	46	0	0.00	23	4	14.81	21	0	0.00	18	3	14.29
PRELID1P1	0	genome.wustl.edu	37	6	126964903	126964903	+	R	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	6	126964903	126964903	G	A	SNP	PRELID1P1	ENST00000567272	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRELID1P1	HGNC	ENSG00000217325	tier1	-	-	50	0	0.00	52	13	20.00	12	0	0.00	7	4	36.36
ENSG00000221672	0	genome.wustl.edu	37	22	47243848	47243855	+	R	DEL	GTGTGCGC	GTGTGCGC	-			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	GTGTGCGC	GTGTGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	22	47243848	47243855	GTGTGCGC	-	DEL	ENSG00000221672	ENST00000408745	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.003:0.002:0.002:0.003:0.004:0.001:0.001:0.001	-	-	-	no_errors	Z97351.1	Clone_based_ensembl_gene	ENSG00000221672	tier1			8	0	0.00	4	0	0.00	8	0	0.00	4	0	0.00
ENSG00000221704	0	genome.wustl.edu	37	2	236480576	236480577	+	R	INS	-	-	TGTGTGTGTGTG			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	2	236480576	236480577	-	TGTGTGTGTGTG	INS	ENSG00000221704	ENST00000408777	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.083:0.055	-	-	-	no_errors	AC012305.1	Clone_based_ensembl_gene	ENSG00000221704	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
POTEM	0	genome.wustl.edu	37	14	20012850	20012850	+	Silent	SNP	A	A	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	14	20012850	20012850	A	T	SNP	POTEM	ENST00000547722	human	ensembl	74_37	-1	known	silent	c.906	p.P302	0.030	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	tier1	rs201036322	-	12	0	0.00	11	6	35.29	0	0	0.00	0	0	0.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	R	DEL	C	C	-			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	Y	10037863	10037863	C	-	DEL	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1			40	0	0.00	48	8	14.29	2	0	0.00	3	0	0.00
SMC6	0	genome.wustl.edu	37	2	17927101	17927101	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	2	17927101	17927101	G	A	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.113	p.T38I	0.998	NULL	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029	tier1	-	-	44	0	0.00	37	4	9.76	135	0	0.00	142	3	2.05