Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
SRGAP1	0	genome.wustl.edu	37	12	64377909	64377909	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	64377909	64377909	C	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.250	p.H84Y	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	tier1	-	-	23	0	0.00	18	66	78.57	98	1	1.01	110	525	82.68
POU1F1	0	genome.wustl.edu	37	3	87322591	87322591	+	Silent	SNP	C	C	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	3	87322591	87322591	C	A	SNP	POU1F1	ENST00000344265	human	ensembl	74_37	-1	known	silent	c.198	p.S66	0.997	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_D-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU1F1	HGNC	ENSG00000064835	tier1	-	-	122	0	0.00	68	28	29.17	51	0	0.00	61	27	30.68
CACNB1	0	genome.wustl.edu	37	17	37351189	37351189	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	17	37351189	37351189	C	G	SNP	CACNB1	ENST00000394303	human	ensembl	74_37	-1	known	missense	c.119	p.R40P	1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	tier1	-	-	85	0	0.00	69	14	16.87	133	0	0.00	99	20	16.81
B4GALNT1	0	genome.wustl.edu	37	12	58025114	58025114	+	Silent	SNP	G	G	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	58025114	58025114	G	A	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	silent	c.252	p.S84	0.981	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	tier1	-	-	24	0	0.00	310	57	15.53	48	0	0.00	706	108	13.25
HTT	0	genome.wustl.edu	37	4	3137957	3137957	+	Nonsense_Mutation	SNP	T	T	G			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	4	3137957	3137957	T	G	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	nonsense	c.2702	p.L901*	0.996	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	tier1	-	-	61	0	0.00	30	4	11.76	91	0	0.00	76	18	19.15
B4GALNT1	0	genome.wustl.edu	37	12	58025075	58025075	+	Silent	SNP	G	G	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	58025075	58025075	G	T	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	silent	c.291	p.V97	0.533	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	tier1	-	-	28	0	0.00	321	65	16.84	61	0	0.00	819	128	13.52
TMPRSS2	0	genome.wustl.edu	37	21	42851103	42851103	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	21	42851103	42851103	G	A	SNP	TMPRSS2	ENST00000398585	human	ensembl	74_37	-1	known	missense	c.790	p.H264Y	0.999	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel	pfam_Peptidase_S1,pfam_SRCR,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS2	HGNC	ENSG00000184012	tier1	-	-	63	0	0.00	56	96	62.75	99	0	0.00	101	147	59.27
KRT121P	0	genome.wustl.edu	37	12	52648120	52648120	+	R	SNP	G	G	C			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	52648120	52648120	G	C	SNP	KRT121P	ENST00000529785	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.195	-	-	-	no_errors	KRT121P	HGNC	ENSG00000135477	tier1	-	-	82	0	0.00	106	60	36.14	63	0	0.00	141	98	41.00
NBPF5P	0	genome.wustl.edu	37	1	108926235	108926235	+	R	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	1	108926235	108926235	C	T	SNP	NBPF5P	ENST00000357046	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NBPF5P	HGNC	ENSG00000243967	tier1	-	-	66	0	0.00	64	14	17.95	66	0	0.00	43	7	14.00
SRGAP1	0	genome.wustl.edu	37	12	64377912	64377912	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	64377912	64377912	C	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	nonsense	c.253	p.Q85*	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	tier1	-	-	22	0	0.00	18	64	78.05	95	0	0.00	107	517	82.85
SMCHD1	0	genome.wustl.edu	37	18	2795948	2795948	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	18	2795948	2795948	T	A	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	missense	c.5721	p.D1907E	0.995	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	tier1	-	-	42	0	0.00	16	8	33.33	82	0	0.00	78	20	20.41
SIPA1L2	0	genome.wustl.edu	37	1	232607223	232607223	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	1	232607223	232607223	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.2137	p.E713K	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	tier1	-	-	82	0	0.00	52	17	24.64	113	0	0.00	105	20	16.00
RFTN2	0	genome.wustl.edu	37	2	198540166	198540166	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	2	198540166	198540166	C	T	SNP	RFTN2	ENST00000295049	human	ensembl	74_37	-1	known	missense	c.17	p.R6K	1.000	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944	tier1	-	-	19	0	0.00	8	6	42.86	84	0	0.00	82	12	12.63
IRS1	0	genome.wustl.edu	37	2	227662435	227662435	+	Silent	SNP	G	G	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	2	227662435	227662435	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.1020	p.A340	0.951	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047	tier1	-	-	73	0	0.00	61	15	19.74	9	0	0.00	21	5	19.23
POTEC	0	genome.wustl.edu	37	18	14542900	14542900	+	Silent	SNP	A	A	G			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	18	14542900	14542900	A	G	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.246	p.T82	0.015	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206	tier1	-	-	435	0	0.00	314	398	55.82	49	0	0.00	50	38	43.18
TAF6L	0	genome.wustl.edu	37	11	62545600	62545600	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	11	62545600	62545600	G	A	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.385	p.V129I	1.000	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227	tier1	-	-	71	0	0.00	75	16	17.58	68	0	0.00	60	16	21.05
EPB41L1	0	genome.wustl.edu	37	20	34797668	34797668	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	20	34797668	34797668	C	T	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	missense	c.1927	p.L643F	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367	tier1	-	-	28	0	0.00	26	9	25.71	54	0	0.00	54	11	16.92
RCOR1	0	genome.wustl.edu	37	14	103173719	103173719	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	14	103173719	103173719	A	G	SNP	RCOR1	ENST00000262241	human	ensembl	74_37	+1	known	missense	c.530	p.N177S	1.000	superfamily_Homeodomain-like,pfscan_ELM2_dom	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom,prints_Antifreeze_1	-	no_errors	RCOR1	HGNC	ENSG00000089902	tier1	-	-	60	0	0.00	32	10	23.81	108	0	0.00	129	25	16.23
KRT121P	0	genome.wustl.edu	37	12	52647544	52647544	+	R	SNP	G	G	A			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	52647544	52647544	G	A	SNP	KRT121P	ENST00000529785	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.182	-	-	-	no_errors	KRT121P	HGNC	ENSG00000135477	tier1	-	-	45	0	0.00	59	52	46.85	73	0	0.00	144	128	47.06
B4GALNT1	0	genome.wustl.edu	37	12	58025099	58025099	+	Silent	SNP	G	G	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	58025099	58025099	G	T	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	silent	c.267	p.L89	0.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	tier1	-	-	24	0	0.00	312	58	15.63	50	1	1.96	765	117	13.25
B4GALNT1	0	genome.wustl.edu	37	12	58024808	58024808	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	12	58024808	58024808	G	C	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	missense	c.445	p.L149V	0.988	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	tier1	-	-	20	0	0.00	260	66	20.18	38	0	0.00	514	139	21.29
GNRH2	0	genome.wustl.edu	37	20	3026346	3026350	+	Frame_Shift_Del	DEL	GCCCC	GCCCC	-			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	GCCCC	GCCCC	GCCCC	-	GCCCC	GCCCC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	20	3026346	3026350	GCCCC	-	DEL	GNRH2	ENST00000245983	human	ensembl	74_37	+1	known	frame_shift_del	c.327_331	p.A113fs	0.024:0.007:0.002:0.001:0.000	NULL	pfam_GnRH	-	no_errors	GNRH2	HGNC	ENSG00000125787	tier1			34	0	0.00	23	7	23.33	34	0	0.00	23	7	23.33
ENPP5	0	genome.wustl.edu	37	6	46129094	46129094	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	6	46129094	46129094	G	C	SNP	ENPP5	ENST00000230565	human	ensembl	74_37	-1	known	missense	c.1403	p.A468G	0.988	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796	tier1	-	-	45	0	0.00	21	4	16.00	118	0	0.00	153	12	7.27
ZFHX2	0	genome.wustl.edu	37	14	23994340	23994340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	14	23994340	23994340	T	-	DEL	ZFHX2	ENST00000419474	human	ensembl	74_37	-1	known	frame_shift_del	c.4811	p.E1604fs	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX2	HGNC	ENSG00000136367	tier1			35	0	0.00	28	4	12.50	60	0	0.00	97	6	5.83
ENSG00000230850	0	genome.wustl.edu	37	1	143156621	143156621	+	R	SNP	C	C	T			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	1	143156621	143156621	C	T	SNP	ENSG00000230850	ENST00000454861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RP11-782C8.1	Clone_based_vega_gene	ENSG00000230850	tier1	rs61786125	-	11	0	0.00	5	4	44.44	2	0	0.00	0	0	0.00
FAM138C	0	genome.wustl.edu	37	9	35199	35199	+	R	SNP	A	A	G			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	9	35199	35199	A	G	SNP	FAM138C	ENST00000305248	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM138C	HGNC	ENSG00000218839	tier1	-	-	15	0	0.00	7	4	36.36	0	0	0.00	0	0	0.00
LOR	0	genome.wustl.edu	37	1	153233991	153233992	+	In_Frame_Ins	INS	-	-	CTCTGGCGGCGT			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	1	153233991	153233992	-	CTCTGGCGGCGT	INS	LOR	ENST00000368742	human	ensembl	74_37	+1	known	in_frame_ins	c.566_567	p.193in_frame_insVSGG	0.014:0.200	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782	tier1			1	0	0.00	0	0	0.00	1	0	0.00	0	0	0.00
AP3B1	0	genome.wustl.edu	37	5	77411983	77412004	+	Frame_Shift_Del	DEL	CTTCCTCAGATTCAGAATAAAA	CTTCCTCAGATTCAGAATAAAA	-			TCGA-DX-A2J4-01A-32D-A21Q-09	TCGA-DX-A2J4-10A-01D-A21Q-09	CTTCCTCAGATTCAGAATAAAA	CTTCCTCAGATTCAGAATAAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	968929b0-6bfb-4a2c-bd4d-570bfcdb8a6a	7beaaff7-e241-4851-8dba-fd0b302c53cf	5	77411983	77412004	CTTCCTCAGATTCAGAATAAAA	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2044_2023	p.F675fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.980:1.000:1.000:0.994:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842	tier1			77	0	0.00	84	2	2.33	77	0	0.00	84	2	2.33