Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
GRAMD2	0	genome.wustl.edu	37	15	72454682	72454682	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	15	72454682	72454682	C	T	SNP	GRAMD2	ENST00000309731	human	ensembl	74_37	-1	known	silent	c.993	p.A331	0.927	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318	tier1	-	-	38	0	0.00	26	12	31.58	124	0	0.00	85	40	31.75
HERC2	0	genome.wustl.edu	37	15	28380835	28380835	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	15	28380835	28380835	A	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.12019	p.Y4007D	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	tier1	-	-	34	0	0.00	13	3	18.75	61	0	0.00	46	7	13.21
ZFR2	0	genome.wustl.edu	37	19	3825349	3825349	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	19	3825349	3825349	C	T	SNP	ZFR2	ENST00000262961	human	ensembl	74_37	-1	known	silent	c.1092	p.L364	0.000	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278	tier1	-	-	56	0	0.00	71	69	49.29	10	0	0.00	10	12	54.55
AGBL2	0	genome.wustl.edu	37	11	47726171	47726171	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	11	47726171	47726171	C	T	SNP	AGBL2	ENST00000357610	human	ensembl	74_37	-1	known	silent	c.510	p.L170	0.001	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923	tier1	-	-	83	0	0.00	47	9	16.07	128	0	0.00	85	19	18.27
CDK20	0	genome.wustl.edu	37	9	90584819	90584819	+	Silent	SNP	G	G	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	9	90584819	90584819	G	A	SNP	CDK20	ENST00000325303	human	ensembl	74_37	-1	known	silent	c.579	p.I193	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK20	HGNC	ENSG00000156345	tier1	-	-	50	0	0.00	39	7	15.22	55	0	0.00	56	12	17.65
TAPBPL	0	genome.wustl.edu	37	12	6562370	6562370	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	12	6562370	6562370	C	T	SNP	TAPBPL	ENST00000266556	human	ensembl	74_37	+1	known	missense	c.202	p.P68S	1.000	NULL	pfam_Ig_C1-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	TAPBPL	HGNC	ENSG00000139192	tier1	-	-	59	0	0.00	131	81	38.21	43	0	0.00	87	49	36.03
ZFAT	0	genome.wustl.edu	37	8	135545136	135545136	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	8	135545136	135545136	T	A	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.3056	p.N1019I	0.050	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	tier1	-	-	71	0	0.00	115	14	10.85	49	0	0.00	102	12	10.53
USP34	0	genome.wustl.edu	37	2	61633120	61633120	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	2	61633120	61633120	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.275	p.S92F	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464	tier1	-	-	56	0	0.00	34	6	15.00	58	0	0.00	61	11	15.28
NRG3	0	genome.wustl.edu	37	10	84744599	84744599	+	Silent	SNP	C	C	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	10	84744599	84744599	C	A	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	silent	c.1644	p.P548	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	tier1	-	-	60	0	0.00	35	7	16.67	88	0	0.00	61	19	23.75
DMXL1	0	genome.wustl.edu	37	5	118451988	118451988	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	5	118451988	118451988	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.700	p.V234I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	tier1	-	-	32	0	0.00	34	105	75.54	136	0	0.00	125	351	73.43
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99017740	99017740	+	Silent	SNP	A	A	G			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	7	99017740	99017740	A	G	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	silent	c.2100	p.I700	0.689	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919	tier1	-	-	42	0	0.00	36	7	16.28	62	0	0.00	63	12	16.00
HERC2	0	genome.wustl.edu	37	15	28478362	28478362	+	Silent	SNP	T	T	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	15	28478362	28478362	T	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.4605	p.K1535	0.986	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	tier1	-	-	187	0	0.00	149	20	11.83	16	0	0.00	24	6	20.00
SOCS6	0	genome.wustl.edu	37	18	67992094	67992094	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	18	67992094	67992094	G	A	SNP	SOCS6	ENST00000397942	human	ensembl	74_37	+1	known	missense	c.190	p.G64R	0.984	NULL	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	tier1	-	-	35	0	0.00	27	4	12.90	85	0	0.00	104	12	10.26
SLC9A2	0	genome.wustl.edu	37	2	103274131	103274131	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	2	103274131	103274131	C	T	SNP	SLC9A2	ENST00000233969	human	ensembl	74_37	+1	known	missense	c.398	p.P133L	1.000	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616	tier1	-	-	152	0	0.00	100	27	21.26	128	0	0.00	115	20	14.81
ZFP69B	0	genome.wustl.edu	37	1	40929111	40929111	+	Silent	SNP	G	G	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	1	40929111	40929111	G	A	SNP	ZFP69B	ENST00000411995	human	ensembl	74_37	+1	known	silent	c.1455	p.R485	0.044	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZFP69B	HGNC	ENSG00000187801	tier1	-	-	34	0	0.00	13	4	23.53	54	0	0.00	62	16	20.51
BRINP2	0	genome.wustl.edu	37	1	177249691	177249691	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	1	177249691	177249691	T	A	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	nonsense	c.1379	p.L460*	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	43	0	0.00	27	13	32.50	39	0	0.00	35	15	30.00
COBL	0	genome.wustl.edu	37	7	51287560	51287560	+	Silent	SNP	G	G	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	7	51287560	51287560	G	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	silent	c.123	p.H41	0.000	pfam_Cordon-bleu_ubiquitin_domain	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	tier1	-	-	41	0	0.00	39	7	15.22	22	0	0.00	16	3	15.79
GRID2	0	genome.wustl.edu	37	4	93225735	93225735	+	R	SNP	A	A	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	4	93225735	93225735	A	T	SNP	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208	tier1	-	-	32	0	0.00	24	4	14.29	51	0	0.00	30	4	11.76
CCL14	0	genome.wustl.edu	37	17	34311580	34311580	+	Silent	SNP	A	A	G			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	17	34311580	34311580	A	G	SNP	CCL14	ENST00000480944	human	ensembl	74_37	-1	putative	silent	c.54	p.P18	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL14	HGNC	ENSG00000213494	tier1	-	-	30	0	0.00	24	4	14.29	78	0	0.00	79	15	15.96
TPPP	0	genome.wustl.edu	37	5	666157	666157	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	5	666157	666157	C	T	SNP	TPPP	ENST00000360578	human	ensembl	74_37	-1	known	silent	c.393	p.K131	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP	HGNC	ENSG00000171368	tier1	-	-	73	0	0.00	83	22	20.95	36	0	0.00	44	7	13.73
CCDC93	0	genome.wustl.edu	37	2	118753041	118753041	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	2	118753041	118753041	T	C	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	missense	c.500	p.K167R	0.996	pfam_DUF2037	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633	tier1	-	-	52	0	0.00	74	12	13.95	103	0	0.00	244	55	18.27
CSMD3	0	genome.wustl.edu	37	8	113651036	113651036	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	8	113651036	113651036	A	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.3415	p.S1139A	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	62	0	0.00	65	12	15.58	68	0	0.00	122	22	15.28
AVIL	0	genome.wustl.edu	37	12	58200182	58200182	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	12	58200182	58200182	C	T	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	silent	c.1632	p.L544	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407	tier1	-	-	26	0	0.00	305	68	18.23	60	0	0.00	951	150	13.60
ANKRD18DP	0	genome.wustl.edu	37	3	197790619	197790619	+	R	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	3	197790619	197790619	C	T	SNP	ANKRD18DP	ENST00000335478	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD18DP	HGNC	ENSG00000226435	tier1	-	-	31	0	0.00	20	8	28.57	51	0	0.00	51	17	25.00
GEMIN4	0	genome.wustl.edu	37	17	651068	651068	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	17	651068	651068	A	T	SNP	GEMIN4	ENST00000319004	human	ensembl	74_37	-1	known	missense	c.215	p.I72N	0.986	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	tier1	-	-	70	0	0.00	38	9	19.15	41	0	0.00	31	12	27.91
EPB41L5	0	genome.wustl.edu	37	2	120918392	120918392	+	R	SNP	C	C	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	2	120918392	120918392	C	A	SNP	EPB41L5	ENST00000488691	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	EPB41L5	HGNC	ENSG00000115109	tier1	-	-	75	0	0.00	41	12	22.64	92	1	1.08	66	28	29.79
OSBPL3	0	genome.wustl.edu	37	7	24902873	24902873	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	7	24902873	24902873	C	T	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	silent	c.816	p.S272	0.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	tier1	-	-	67	0	0.00	35	8	18.60	93	0	0.00	105	24	18.60
MRPS30	0	genome.wustl.edu	37	5	44809252	44809252	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	5	44809252	44809252	T	G	SNP	MRPS30	ENST00000507110	human	ensembl	74_37	+1	known	missense	c.188	p.I63S	0.122	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996	tier1	-	-	48	0	0.00	37	7	15.91	9	0	0.00	7	7	50.00
NT5E	0	genome.wustl.edu	37	6	86160038	86160038	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	6	86160038	86160038	G	C	SNP	NT5E	ENST00000257770	human	ensembl	74_37	+1	known	missense	c.181	p.V61L	1.000	pfam_PEstase_dom	pfam_5'-Nucleotdase_C,pfam_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	tier1	-	-	11	0	0.00	8	6	42.86	11	0	0.00	5	6	54.55
RGPD4	0	genome.wustl.edu	37	2	108487407	108487407	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	2	108487407	108487407	G	C	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.2947	p.G983R	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	tier1	-	-	78	0	0.00	39	25	39.06	5	0	0.00	6	4	40.00
APC2	0	genome.wustl.edu	37	19	1455427	1455427	+	Silent	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	19	1455427	1455427	C	T	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	silent	c.567	p.F189	1.000	pfam_APC_dom	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266	tier1	-	-	47	0	0.00	39	4	9.30	23	0	0.00	4	0	0.00
DNM1P51	0	genome.wustl.edu	37	15	84957462	84957466	+	R	DEL	GTGGC	GTGGC	-			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	GTGGC	GTGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	15	84957462	84957466	GTGGC	-	DEL	DNM1P51	ENST00000558801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.944:0.935:0.925:0.912:0.907	-	-	-	no_errors	DNM1P51	HGNC	ENSG00000235370	tier1			2	0	0.00	2	0	0.00	2	0	0.00	2	0	0.00
ENSG00000259241	0	genome.wustl.edu	37	15	51987959	51987960	+	R	INS	-	-	A			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	15	51987959	51987960	-	A	INS	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.006	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241	tier1			14	0	0.00	10	4	28.57	0	0	0.00	0	0	0.00
ZAP70	0	genome.wustl.edu	37	2	98340753	98340753	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	2	98340753	98340753	A	C	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.254	p.E85A	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085	tier1	-	-	34	0	0.00	15	7	31.82	4	0	0.00	5	3	37.50
COPS4	0	genome.wustl.edu	37	4	83978556	83978556	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	4	83978556	83978556	C	T	SNP	COPS4	ENST00000264389	human	ensembl	74_37	+1	known	missense	c.710	p.S237L	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS4	HGNC	ENSG00000138663	tier1	-	-	38	0	0.00	38	4	9.52	113	0	0.00	152	2	1.29
CCDC126	0	genome.wustl.edu	37	7	23650855	23650855	+	R	DEL	T	T	-			TCGA-DX-A1KZ-01A-11D-A24N-09	TCGA-DX-A1KZ-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	aacfaf58-eb86-443a-a1d0-54c121ca3733	11c93f95-9863-4cb0-a348-f35a54b2071a	7	23650855	23650855	T	-	DEL	CCDC126	ENST00000486109	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.020	-	-	-	no_errors	CCDC126	HGNC	ENSG00000169193	tier1			26	0	0.00	13	4	23.53	52	0	0.00	61	2	3.17