Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DMBT1	1755	broad.mit.edu	36	10	124392847	124392847	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007329	exon53	c.C7185T	p.V2395V	.	.	.
CHST15	51363	broad.mit.edu	36	10	125770794	125770794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015892	exon6	c.G1315A	p.V439I	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20608703	20608703	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032812	exon14	c.A1539C	p.E513D	.	.	.
C10orf113	387638	broad.mit.edu	36	10	21475322	21475322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010896	exon1	c.C122T	p.S41L	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37545298	37545298	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052997	exon32	c.T2885C	p.V962A	.	.	.
RHOBTB1	9886	broad.mit.edu	36	10	62304769	62304769	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014836	exon9	c.G1764A	p.T588T	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102554995	102554995	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001377	exon39	c.A6170C	p.D2057A	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112581545	112581545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001076682	exon4	c.C438T	p.P146P	.	.	.
DLG2	1740	broad.mit.edu	36	11	83552184	83552184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142700	exon2	c.G124A	p.E42K	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122859365	122859365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207437	exon18	c.C2702T	p.T901M	.	.	.
MMP17	4326	broad.mit.edu	36	12	130891242	130891242	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016155	exon4	c.C594T	p.Y198Y	.	.	.
POLE	5426	broad.mit.edu	36	12	131719422	131719422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006231	exon44	c.G6037A	p.D2013N	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	 KRAS,lung,NS,Substitution - Missense,-1 	.	.
ITPR2	3709	broad.mit.edu	36	12	26531282	26531282	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002223	exon40	c.G5540C	p.G1847A	.	.	.
KRT75	9119	broad.mit.edu	36	12	51113906	51113906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004693	exon1	c.C450T	p.R150R	.	.	.
PCID2	55795	broad.mit.edu	36	13	112886680	112886680	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018386	exon9	c.T666G	p.F222L	.	.	.
CCDC70	83446	broad.mit.edu	36	13	51337669	51337669	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031290	exon2	c.C154T	p.R52C	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699644	66699644	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020403	exon2	c.G930A	p.G310G	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104489889	104489889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.G2944A	p.G982R	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44763170	44763170	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018353	exon11	c.A2370T	p.K790N	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46496465	46496465	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182830	exon9	c.T1057G	p.L353V	.	.	.
ZBTB1	22890	broad.mit.edu	36	14	64059926	64059926	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001123329	exon2	c.C1951T	p.R651W	.	.	.
SERPINA3	12	broad.mit.edu	36	14	94150854	94150854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001085	exon2	c.C323T	p.T108M	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23491271	23491271	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024490	exon14	c.C2876A	p.P959Q	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63026679	63026679	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182703	exon13	c.C1164T	p.D388D	.	.	.
CSK	1445	broad.mit.edu	36	15	72881153	72881153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004383	exon11	c.C952T	p.R318C	.	.	.
BNC1	646	broad.mit.edu	36	15	81726708	81726708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001717	exon3	c.C319T	p.R107C	.	.	.
SPATA8	145946	broad.mit.edu	36	15	95128446	95128446	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173499	exon2	c.A149C	p.K50T	.	.	.
TMEM8A	58986	broad.mit.edu	36	16	364064	364064	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021259	exon11	c.G1844T	p.G615V	.	.	.
EDC4	23644	broad.mit.edu	36	16	66474440	66474440	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014329	exon27	c.C3708T	p.A1236A	.	.	.
DHODH	1723	broad.mit.edu	36	16	70614936	70614936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001361	exon8	c.C1036T	p.R346W	.	.	.
C17orf104	284071	broad.mit.edu	36	17	40100864	40100864	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145080	exon5	c.G2059T	p.G687W	.	.	.
DERL2	51009	broad.mit.edu	36	17	5325343	5325343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016041	exon4	c.G324A	p.M108I	.	.	.
GPRC5C	55890	broad.mit.edu	36	17	69948199	69948199	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018653	exon2	c.C725A	p.A242D	.	.	.
USH1G	124590	broad.mit.edu	36	17	70427574	70427574	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173477	exon2	c.C952T	p.R318C	.	.	.
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.
C18orf34	374864	broad.mit.edu	36	18	28926799	28926799	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198995	exon20	c.T2198C	p.L733S	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43648751	43648751	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon4	c.C506G	p.S169C	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54737478	54737478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018181	exon4	c.C979A	p.P327T	.	.	.
DNM2	1785	broad.mit.edu	36	19	10748842	10748842	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190716	exon5	c.G638A	p.G213D	.	.	.
C19orf26	255057	broad.mit.edu	36	19	1185738	1185738	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152769	exon6	c.C441T	p.Y147Y	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13270402	13270402	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174080	exon19	c.G3048T	p.G1016G	.	.	.
SLC1A6	6511	broad.mit.edu	36	19	14940274	14940274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005071	exon3	c.G389A	p.R130Q	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42074778	42074778	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037232	exon6	c.G755T	p.C252F	.	.	.
SIGLEC7	27036	broad.mit.edu	36	19	56337809	56337809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014385	exon1	c.G371A	p.R124H	.	.	.
CACNG7	59284	broad.mit.edu	36	19	59137207	59137207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031896	exon5	c.G676A	p.D226N	.	.	.
RPL28	6158	broad.mit.edu	36	19	60589825	60589825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136137	exon3	c.C157T	p.P53S	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6134076	6134076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030924	exon10	c.G1115A	p.R372H	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61867006	61867006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005850	exon2	c.G1439A	p.R480H	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018182	62018182	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146186	exon7	c.C3440G	p.T1147S	.	.	.
DENND2D	79961	broad.mit.edu	36	1	111538774	111538774	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024901	exon7	c.T743C	p.F248S	.	.	.
SYT6	148281	broad.mit.edu	36	1	114481749	114481749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_205848	exon3	c.G707A	p.R236H	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188334553	188334553	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199051	exon8	c.C1519T	p.R507X	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194704749	194704749	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198503	exon6	c.T457G	p.S153A	.	.	.
F13B	2165	broad.mit.edu	36	1	195276318	195276318	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001994	exon11	c.G1909T	p.D637Y	.	.	.
IGFN1	91156	broad.mit.edu	36	1	199452503	199452503	+	Missense_Mutation	SNP	G	T	T	rs35601315	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164586	exon16	c.G9594T	p.E3198D	.	.	.
ETNK2	55224	broad.mit.edu	36	1	202382420	202382420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018208	exon3	c.C614T	p.T205M	.	.	.
RYR2	6262	broad.mit.edu	36	1	235938937	235938937	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon69	c.T10058C	p.L3353P	.	.	.
FAM54B	56181	broad.mit.edu	36	1	26028895	26028895	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099625	exon6	c.C760T	p.Q254X	.	.	.
MUTYH	4595	broad.mit.edu	36	1	45571731	45571731	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001048173	exon3	c.C205T	p.R69X	.	.	.
CHD6	84181	broad.mit.edu	36	20	39545438	39545438	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032221	exon16	c.G2393A	p.G798D	.	.	.
CASS4	57091	broad.mit.edu	36	20	54445875	54445875	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020356	exon2	c.G285A	p.E95E	.	.	.
XKR3	150165	broad.mit.edu	36	22	15644597	15644597	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175878	exon4	c.A1292G	p.K431R	.	.	.
SLC5A4	6527	broad.mit.edu	36	22	30955241	30955241	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014227	exon11	c.T1220C	p.I407T	.	.	.
ZC3H7B	23264	broad.mit.edu	36	22	40075156	40075156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017590	exon16	c.G1853A	p.R618H	.	.	.
DPP10	57628	broad.mit.edu	36	2	116265353	116265353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178036	exon20	c.C1501T	p.L501F	.	.	.
NEB	4703	broad.mit.edu	36	2	152215040	152215040	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164507	exon54	c.A7327C	p.S2443R	.	.	.
FIGN	55137	broad.mit.edu	36	2	164176173	164176173	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018086	exon3	c.C415A	p.L139I	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166792479	166792479	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002977	exon23	c.G4174T	p.A1392S	.	.	.
TTN	7273	broad.mit.edu	36	2	179171739	179171739	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon119	c.G29748A	p.A9916A	.	.	.
WDR75	84128	broad.mit.edu	36	2	190021438	190021438	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032168	exon2	c.C175T	p.L59L	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197698409	197698409	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153697	exon6	c.C491A	p.A164E	.	.	.
STRADB	55437	broad.mit.edu	36	2	202045980	202045980	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018571	exon5	c.C251T	p.T84I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206870310	206870310	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020923	exon4	c.G156T	p.L52L	.	.	.
C2orf57	165100	broad.mit.edu	36	2	232167075	232167075	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152614	exon1	c.C1169A	p.A390D	.	.	.
ERLEC1	27248	broad.mit.edu	36	2	53882257	53882257	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015701	exon7	c.T745G	p.Y249D	.	.	.
KIAA1841	84542	broad.mit.edu	36	2	61178381	61178381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032506	exon12	c.G1255A	p.E419K	.	.	.
CBLB	868	broad.mit.edu	36	3	106942043	106942043	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170662	exon7	c.G968T	p.G323V	.	.	.
A4GNT	51146	broad.mit.edu	36	3	139332648	139332648	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016161	exon2	c.C141G	p.S47R	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156683010	156683010	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130960	exon23	c.A3523T	p.S1175C	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38728917	38728917	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006514	exon22	c.C3828T	p.G1276G	.	.	.
BSN	8927	broad.mit.edu	36	3	49674690	49674690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003458	exon6	c.C10408T	p.R3470W	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77749400	77749400	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128929	exon21	c.T3281C	p.L1094P	.	.	.
GALNTL6	442117	broad.mit.edu	36	4	174109960	174109960	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034845	exon10	c.G1347T	p.E449D	.	.	.
CORIN	10699	broad.mit.edu	36	4	47371200	47371200	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006587	exon10	c.C1324G	p.L442V	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62441203	62441203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015236	exon7	c.G1511A	p.R504Q	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62457905	62457905	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015236	exon9	c.T1716C	p.A572A	.	.	.
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
GFRA3	2676	broad.mit.edu	36	5	137621503	137621503	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001496	exon4	c.C509T	p.T170I	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533867	140533867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018940	exon1	c.G1267A	p.V423I	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179673427	179673427	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005110	exon14	c.G1417C	p.V473L	.	.	.
GPR98	84059	broad.mit.edu	36	5	90076671	90076671	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032119	exon51	c.G10602A	p.S3534S	.	.	.
SIM1	6492	broad.mit.edu	36	6	100948334	100948334	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005068	exon10	c.G1320A	p.S440S	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102590065	102590065	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021956	exon14	c.C2242T	p.R748W	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152727842	152727842	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033071	exon63	c.A9999G	p.L3333L	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166756791	166756791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021135	exon17	c.C1686T	p.R562R	.	.	.
C6orf70	55780	broad.mit.edu	36	6	169901046	169901046	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018341	exon6	c.T565A	p.L189I	.	.	.
C6orf70	55780	broad.mit.edu	36	6	169910183	169910183	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018341	exon11	c.G1050C	p.E350D	.	.	.
FAM50B	26240	broad.mit.edu	36	6	3795927	3795927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012135	exon2	c.C883T	p.R295C	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88024585	88024585	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015021	exon8	c.G4519A	p.E1507K	.	.	.
MUC17	140453	broad.mit.edu	36	7	100472658	100472658	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040105	exon3	c.G11241T	p.M3747I	.	.	.
AKR1B15	441282	broad.mit.edu	36	7	133906945	133906945	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080538	exon6	c.G485T	p.G162V	.	.	.
AGK	55750	broad.mit.edu	36	7	140980211	140980211	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018238	exon10	c.A630G	p.R210R	.	.	.
SSPO	23145	broad.mit.edu	36	7	149107986	149107986	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198455	exon10	c.C1232T	p.P411L	.	.	.
EPDR1	54749	broad.mit.edu	36	7	37955153	37955153	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017549	exon2	c.G816A	p.S272S	.	.	.
PCLO	27445	broad.mit.edu	36	7	82420300	82420300	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033026	exon5	c.A7905C	p.S2635S	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88802116	88802116	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181646	exon4	c.T1884C	p.P628P	.	.	.
WDR86	349136	broad.mit.edu	36	7	150724073	150724073	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198285	exon3	c.448delG	p.D150fs	.	.	.
TM7SF4	81501	broad.mit.edu	36	8	105430630	105430630	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030788	exon2	c.T674G	p.L225R	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113336794	113336794	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198123	exon62	c.A9901C	p.K3301Q	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142555259	142555259	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207414	exon13	c.C1616T	p.T539M	.	.	.
MYOM2	9172	broad.mit.edu	36	8	1986349	1986349	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003970	exon2	c.G62A	p.R21H	.	.	.
PDLIM2	64236	broad.mit.edu	36	8	22507287	22507287	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021630	exon10	c.C1728G	p.F576L	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2810766	2810766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon59	c.C9219T	p.H3073H	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95574101	95574101	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015496	exon21	c.G4763T	p.G1588V	.	.	.
RALGDS	5900	broad.mit.edu	36	9	134973499	134973499	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006266	exon6	c.A894C	p.T298T	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32625569	32625569	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153809	exon1	c.C9T	p.P3P	.	.	.
TLE4	7091	broad.mit.edu	36	9	81378428	81378428	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007005	exon2	c.C50A	p.P17Q	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94649760	94649760	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007101	exon4	c.T1022A	p.I341N	.	.	.
ZCCHC6	79670	broad.mit.edu	36	9	88128005	88128006	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024617	exon13	c.2479_2480del	p.827_827del	.	.	.
UTP14A	10813	broad.mit.edu	36	X	128887722	128887722	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006649	exon13	c.C1896T	p.G632G	.	.	.
HMGB3	3149	broad.mit.edu	36	X	149906284	149906284	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005342	exon4	c.G316A	p.E106K	.	.	.
MAGEA4	4103	broad.mit.edu	36	X	150843434	150843434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002362	exon3	c.C642T	p.G214G	.	.	.
BMX	660	broad.mit.edu	36	X	15437377	15437377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203281	exon3	c.G143A	p.R48K	.	.	.
ZNF41	7592	broad.mit.edu	36	X	47193222	47193222	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153380	exon5	c.G891A	p.K297K	.	.	.
MAGED2	10916	broad.mit.edu	36	X	54858577	54858577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201222	exon12	c.G1558A	p.E520K	.	.	.
FAM104B	90736	broad.mit.edu	36	X	55204308	55204308	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A01W-01A-21W-A096-10	TCGA-AG-A01W-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166704	exon1	c.G7A	p.G3S	.	.	.